0.013708
0.000000
0.000000
0.000000
0.012123
0.000000
0.000000
0.000000
0.006527
0.00000
0.00000
0.00000
Bruender, N.A.
Thoden, J.B.
Holden, H.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
72.948
82.487
153.220
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C10 H16 N2 O11 P2
402.188
THYMIDINE-5'-DIPHOSPHATE
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
S
P
N
349
N
O
N
350
N
O
N
351
N
O
N
352
N
P
N
353
N
O
N
354
N
O
N
355
N
O
N
356
N
O
N
357
N
C
N
358
R
C
N
359
N
O
N
360
S
C
N
361
N
O
N
362
N
C
N
363
R
C
Y
364
N
N
Y
365
N
C
N
366
N
O
Y
367
N
N
Y
368
N
C
N
369
N
O
Y
370
N
C
N
371
N
C
Y
372
N
C
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
N
400
N
O
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
sing
Y
363
N
sing
N
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
doub
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
Y
387
N
doub
Y
388
N
sing
Y
389
N
sing
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
49
3517
3524
10.1021/bi100318v
20334431
X-ray structure of kijd3, a key enzyme involved in the biosynthesis of D-kijanose.
2010
10.2210/pdb3m9v/pdb
pdb_00003m9v
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277
1
Supper Mirrors
AREA DETECTOR
2010-02-05
SIEMENS HI-STAR
Nickel filter
SINGLE WAVELENGTH
M
x-ray
1
1.54178
1.0
1.54178
ROTATING ANODE
RIGAKU RU200
46490.551
FAD-dependent oxidoreductase
1
man
polymer
402.188
THYMIDINE-5'-DIPHOSPHATE
1
syn
non-polymer
18.015
water
108
nat
water
no
no
GHMPPWTARQDSTTGLYAPVTPAGRVLLDRLAAHLPRIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDR
LYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGA
GGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVL
MRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADA
LSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSA
QALGIERDNNYMSTWAKRSGGNGKSADAAGPRRPTPTSR
GHMPPWTARQDSTTGLYAPVTPAGRVLLDRLAAHLPRIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDR
LYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGA
GGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVL
MRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADA
LSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSA
QALGIERDNNYMSTWAKRSGGNGKSADAAGPRRPTPTSR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
KijD3
46161
Actinomadura kijaniata
562
Escherichia coli
Rosetta2 DE3
plasmid
pET28
1
2.48
50.38
VAPOR DIFFUSION, HANGING DROP
5.5
1.3-1.6 M Ammonium Sulfate
10 mM dTDP-phenol, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-04-07
1
1
2011-07-13
1
2
2017-11-08
1
3
2024-02-21
1
4
2024-04-03
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2010-03-22
REL
REL
TYD
THYMIDINE-5'-DIPHOSPHATE
HOH
water
In-house MIR model
Other
experimental model
TYD
901
2
TYD
TYD
901
A
HOH
1
3
HOH
HOH
438
A
HOH
2
3
HOH
HOH
439
A
HOH
3
3
HOH
HOH
440
A
HOH
4
3
HOH
HOH
441
A
HOH
5
3
HOH
HOH
442
A
HOH
6
3
HOH
HOH
443
A
HOH
7
3
HOH
HOH
444
A
HOH
8
3
HOH
HOH
445
A
HOH
9
3
HOH
HOH
446
A
HOH
10
3
HOH
HOH
447
A
HOH
11
3
HOH
HOH
448
A
HOH
12
3
HOH
HOH
449
A
HOH
13
3
HOH
HOH
450
A
HOH
14
3
HOH
HOH
451
A
HOH
15
3
HOH
HOH
452
A
HOH
16
3
HOH
HOH
453
A
HOH
17
3
HOH
HOH
454
A
HOH
19
3
HOH
HOH
455
A
HOH
20
3
HOH
HOH
456
A
HOH
21
3
HOH
HOH
457
A
HOH
22
3
HOH
HOH
458
A
HOH
23
3
HOH
HOH
459
A
HOH
24
3
HOH
HOH
460
A
HOH
25
3
HOH
HOH
461
A
HOH
26
3
HOH
HOH
462
A
HOH
27
3
HOH
HOH
463
A
HOH
28
3
HOH
HOH
464
A
HOH
29
3
HOH
HOH
465
A
HOH
30
3
HOH
HOH
466
A
HOH
31
3
HOH
HOH
467
A
HOH
32
3
HOH
HOH
468
A
HOH
33
3
HOH
HOH
469
A
HOH
34
3
HOH
HOH
470
A
HOH
35
3
HOH
HOH
471
A
HOH
36
3
HOH
HOH
472
A
HOH
37
3
HOH
HOH
473
A
HOH
39
3
HOH
HOH
474
A
HOH
40
3
HOH
HOH
475
A
HOH
41
3
HOH
HOH
476
A
HOH
42
3
HOH
HOH
477
A
HOH
43
3
HOH
HOH
478
A
HOH
44
3
HOH
HOH
479
A
HOH
45
3
HOH
HOH
480
A
HOH
46
3
HOH
HOH
481
A
HOH
48
3
HOH
HOH
482
A
HOH
49
3
HOH
HOH
483
A
HOH
50
3
HOH
HOH
484
A
HOH
51
3
HOH
HOH
485
A
HOH
53
3
HOH
HOH
486
A
HOH
54
3
HOH
HOH
487
A
HOH
55
3
HOH
HOH
488
A
HOH
57
3
HOH
HOH
489
A
HOH
58
3
HOH
HOH
490
A
HOH
59
3
HOH
HOH
491
A
HOH
60
3
HOH
HOH
492
A
HOH
61
3
HOH
HOH
493
A
HOH
64
3
HOH
HOH
494
A
HOH
65
3
HOH
HOH
495
A
HOH
66
3
HOH
HOH
496
A
HOH
67
3
HOH
HOH
497
A
HOH
68
3
HOH
HOH
498
A
HOH
70
3
HOH
HOH
499
A
HOH
73
3
HOH
HOH
500
A
HOH
75
3
HOH
HOH
501
A
HOH
76
3
HOH
HOH
502
A
HOH
77
3
HOH
HOH
503
A
HOH
78
3
HOH
HOH
504
A
HOH
79
3
HOH
HOH
505
A
HOH
80
3
HOH
HOH
506
A
HOH
83
3
HOH
HOH
507
A
HOH
84
3
HOH
HOH
508
A
HOH
85
3
HOH
HOH
509
A
HOH
86
3
HOH
HOH
510
A
HOH
91
3
HOH
HOH
511
A
HOH
92
3
HOH
HOH
512
A
HOH
93
3
HOH
HOH
513
A
HOH
95
3
HOH
HOH
514
A
HOH
96
3
HOH
HOH
515
A
HOH
99
3
HOH
HOH
516
A
HOH
101
3
HOH
HOH
517
A
HOH
102
3
HOH
HOH
518
A
HOH
103
3
HOH
HOH
519
A
HOH
104
3
HOH
HOH
520
A
HOH
105
3
HOH
HOH
521
A
HOH
106
3
HOH
HOH
522
A
HOH
107
3
HOH
HOH
523
A
HOH
108
3
HOH
HOH
524
A
HOH
110
3
HOH
HOH
525
A
HOH
111
3
HOH
HOH
526
A
HOH
113
3
HOH
HOH
527
A
HOH
114
3
HOH
HOH
528
A
HOH
115
3
HOH
HOH
529
A
HOH
116
3
HOH
HOH
530
A
HOH
119
3
HOH
HOH
531
A
HOH
120
3
HOH
HOH
532
A
HOH
122
3
HOH
HOH
533
A
HOH
125
3
HOH
HOH
534
A
HOH
130
3
HOH
HOH
535
A
HOH
132
3
HOH
HOH
536
A
HOH
135
3
HOH
HOH
537
A
HOH
140
3
HOH
HOH
538
A
HOH
141
3
HOH
HOH
539
A
HOH
145
3
HOH
HOH
540
A
HOH
146
3
HOH
HOH
541
A
HOH
150
3
HOH
HOH
542
A
HOH
151
3
HOH
HOH
543
A
HOH
152
3
HOH
HOH
544
A
HOH
153
3
HOH
HOH
545
A
n
1
-1
A
n
2
0
A
n
3
1
A
n
4
2
A
n
5
3
A
n
6
4
A
n
7
5
A
n
8
6
A
n
9
7
A
n
10
8
A
n
11
9
A
SER
10
n
12
SER
10
A
THR
11
n
13
THR
11
A
THR
12
n
14
THR
12
A
GLY
13
n
15
GLY
13
A
LEU
14
n
16
LEU
14
A
TYR
15
n
17
TYR
15
A
ALA
16
n
18
ALA
16
A
PRO
17
n
19
PRO
17
A
VAL
18
n
20
VAL
18
A
THR
19
n
21
THR
19
A
PRO
20
n
22
PRO
20
A
ALA
21
n
23
ALA
21
A
GLY
22
n
24
GLY
22
A
ARG
23
n
25
ARG
23
A
VAL
24
n
26
VAL
24
A
LEU
25
n
27
LEU
25
A
LEU
26
n
28
LEU
26
A
ASP
27
n
29
ASP
27
A
ARG
28
n
30
ARG
28
A
LEU
29
n
31
LEU
29
A
ALA
30
n
32
ALA
30
A
ALA
31
n
33
ALA
31
A
HIS
32
n
34
HIS
32
A
LEU
33
n
35
LEU
33
A
PRO
34
n
36
PRO
34
A
ARG
35
n
37
ARG
35
A
ILE
36
n
38
ILE
36
A
ARG
37
n
39
ARG
37
A
SER
38
n
40
SER
38
A
THR
39
n
41
THR
39
A
ALA
40
n
42
ALA
40
A
ALA
41
n
43
ALA
41
A
GLU
42
n
44
GLU
42
A
HIS
43
n
45
HIS
43
A
ASP
44
n
46
ASP
44
A
ARG
45
n
47
ARG
45
A
ASP
46
n
48
ASP
46
A
GLY
47
n
49
GLY
47
A
THR
48
n
50
THR
48
A
PHE
49
n
51
PHE
49
A
PRO
50
n
52
PRO
50
A
THR
51
n
53
THR
51
A
ASP
52
n
54
ASP
52
A
THR
53
n
55
THR
53
A
PHE
54
n
56
PHE
54
A
ASP
55
n
57
ASP
55
A
ALA
56
n
58
ALA
56
A
LEU
57
n
59
LEU
57
A
ARG
58
n
60
ARG
58
A
LYS
59
n
61
LYS
59
A
ASP
60
n
62
ASP
60
A
GLY
61
n
63
GLY
61
A
LEU
62
n
64
LEU
62
A
MET
63
n
65
MET
63
A
GLY
64
n
66
GLY
64
A
ALA
65
n
67
ALA
65
A
THR
66
n
68
THR
66
A
VAL
67
n
69
VAL
67
A
PRO
68
n
70
PRO
68
A
ALA
69
n
71
ALA
69
A
GLU
70
n
72
GLU
70
A
LEU
71
n
73
LEU
71
A
GLY
72
n
74
GLY
72
A
GLY
73
n
75
GLY
73
A
LEU
74
n
76
LEU
74
A
GLY
75
n
77
GLY
75
A
VAL
76
n
78
VAL
76
A
ASP
77
n
79
ASP
77
A
ARG
78
n
80
ARG
78
A
LEU
79
n
81
LEU
79
A
TYR
80
n
82
TYR
80
A
ASP
81
n
83
ASP
81
A
VAL
82
n
84
VAL
82
A
ALA
83
n
85
ALA
83
A
VAL
84
n
86
VAL
84
A
ALA
85
n
87
ALA
85
A
LEU
86
n
88
LEU
86
A
LEU
87
n
89
LEU
87
A
ALA
88
n
90
ALA
88
A
VAL
89
n
91
VAL
89
A
ALA
90
n
92
ALA
90
A
ARG
91
n
93
ARG
91
A
ALA
92
n
94
ALA
92
A
ASP
93
n
95
ASP
93
A
ALA
94
n
96
ALA
94
A
SER
95
n
97
SER
95
A
THR
96
n
98
THR
96
A
ALA
97
n
99
ALA
97
A
LEU
98
n
100
LEU
98
A
ALA
99
n
101
ALA
99
A
LEU
100
n
102
LEU
100
A
HIS
101
n
103
HIS
101
A
MET
102
n
104
MET
102
A
GLN
103
n
105
GLN
103
A
LEU
104
n
106
LEU
104
A
SER
105
n
107
SER
105
A
ARG
106
n
108
ARG
106
A
GLY
107
n
109
GLY
107
A
LEU
108
n
110
LEU
108
A
THR
109
n
111
THR
109
A
LEU
110
n
112
LEU
110
A
GLY
111
n
113
GLY
111
A
TYR
112
n
114
TYR
112
A
GLU
113
n
115
GLU
113
A
TRP
114
n
116
TRP
114
A
ARG
115
n
117
ARG
115
A
HIS
116
n
118
HIS
116
A
GLY
117
n
119
GLY
117
A
ASP
118
n
120
ASP
118
A
GLU
119
n
121
GLU
119
A
ARG
120
n
122
ARG
120
A
ALA
121
n
123
ALA
121
A
ARG
122
n
124
ARG
122
A
THR
123
n
125
THR
123
A
LEU
124
n
126
LEU
124
A
ALA
125
n
127
ALA
125
A
GLU
126
n
128
GLU
126
A
ARG
127
n
129
ARG
127
A
ILE
128
n
130
ILE
128
A
LEU
129
n
131
LEU
129
A
ARG
130
n
132
ARG
130
A
GLY
131
n
133
GLY
131
A
MET
132
n
134
MET
132
A
VAL
133
n
135
VAL
133
A
ALA
134
n
136
ALA
134
A
GLY
135
n
137
GLY
135
A
ASP
136
n
138
ASP
136
A
ALA
137
n
139
ALA
137
A
VAL
138
n
140
VAL
138
A
VAL
139
n
141
VAL
139
A
CYS
140
n
142
CYS
140
A
SER
141
n
143
SER
141
A
GLY
142
n
144
GLY
142
A
ILE
143
n
145
ILE
143
A
LYS
144
n
146
LYS
144
A
ASP
145
n
147
ASP
145
A
HIS
146
n
148
HIS
146
A
HIS
147
n
149
HIS
147
A
THR
148
n
150
THR
148
A
ALA
149
n
151
ALA
149
A
VAL
150
n
152
VAL
150
A
THR
151
n
153
THR
151
A
THR
152
n
154
THR
152
A
LEU
153
n
155
LEU
153
A
ARG
154
n
156
ARG
154
A
PRO
155
n
157
PRO
155
A
ASP
156
n
158
ASP
156
A
GLY
157
n
159
GLY
157
A
ALA
158
n
160
ALA
158
A
GLY
159
n
161
GLY
159
A
GLY
160
n
162
GLY
160
A
TRP
161
n
163
TRP
161
A
LEU
162
n
164
LEU
162
A
LEU
163
n
165
LEU
163
A
SER
164
n
166
SER
164
A
GLY
165
n
167
GLY
165
A
ARG
166
n
168
ARG
166
A
LYS
167
n
169
LYS
167
A
THR
168
n
170
THR
168
A
LEU
169
n
171
LEU
169
A
VAL
170
n
172
VAL
170
A
SER
171
n
173
SER
171
A
MET
172
n
174
MET
172
A
ALA
173
n
175
ALA
173
A
PRO
174
n
176
PRO
174
A
VAL
175
n
177
VAL
175
A
GLY
176
n
178
GLY
176
A
THR
177
n
179
THR
177
A
HIS
178
n
180
HIS
178
A
PHE
179
n
181
PHE
179
A
VAL
180
n
182
VAL
180
A
ILE
181
n
183
ILE
181
A
ASN
182
n
184
ASN
182
A
ALA
183
n
185
ALA
183
A
ARG
184
n
186
ARG
184
A
THR
185
n
187
THR
185
A
ASP
186
n
188
ASP
186
A
GLY
187
n
189
GLY
187
A
n
190
188
A
n
191
189
A
GLY
190
n
192
GLY
190
A
PRO
191
n
193
PRO
191
A
PRO
192
n
194
PRO
192
A
ARG
193
n
195
ARG
193
A
LEU
194
n
196
LEU
194
A
ALA
195
n
197
ALA
195
A
SER
196
n
198
SER
196
A
PRO
197
n
199
PRO
197
A
VAL
198
n
200
VAL
198
A
VAL
199
n
201
VAL
199
A
THR
200
n
202
THR
200
A
ARG
201
n
203
ARG
201
A
ASP
202
n
204
ASP
202
A
THR
203
n
205
THR
203
A
PRO
204
n
206
PRO
204
A
GLY
205
n
207
GLY
205
A
PHE
206
n
208
PHE
206
A
THR
207
n
209
THR
207
A
VAL
208
n
210
VAL
208
A
LEU
209
n
211
LEU
209
A
ASP
210
n
212
ASP
210
A
ASN
211
n
213
ASN
211
A
TRP
212
n
214
TRP
212
A
ASP
213
n
215
ASP
213
A
GLY
214
n
216
GLY
214
A
LEU
215
n
217
LEU
215
A
GLY
216
n
218
GLY
216
A
MET
217
n
219
MET
217
A
ARG
218
n
220
ARG
218
A
ALA
219
n
221
ALA
219
A
SER
220
n
222
SER
220
A
GLY
221
n
223
GLY
221
A
THR
222
n
224
THR
222
A
VAL
223
n
225
VAL
223
A
ASP
224
n
226
ASP
224
A
ILE
225
n
227
ILE
225
A
VAL
226
n
228
VAL
226
A
PHE
227
n
229
PHE
227
A
ASP
228
n
230
ASP
228
A
ASP
229
n
231
ASP
229
A
CYS
230
n
232
CYS
230
A
PRO
231
n
233
PRO
231
A
ILE
232
n
234
ILE
232
A
PRO
233
n
235
PRO
233
A
ALA
234
n
236
ALA
234
A
ASP
235
n
237
ASP
235
A
HIS
236
n
238
HIS
236
A
VAL
237
n
239
VAL
237
A
LEU
238
n
240
LEU
238
A
MET
239
n
241
MET
239
A
ARG
240
n
242
ARG
240
A
ASP
241
n
243
ASP
241
A
PRO
242
n
244
PRO
242
A
n
245
243
A
n
246
244
A
ALA
245
n
247
ALA
245
A
ARG
246
n
248
ARG
246
A
ASN
247
n
249
ASN
247
A
ASP
248
n
250
ASP
248
A
ALA
249
n
251
ALA
249
A
VAL
250
n
252
VAL
250
A
LEU
251
n
253
LEU
251
A
ALA
252
n
254
ALA
252
A
GLY
253
n
255
GLY
253
A
GLN
254
n
256
GLN
254
A
THR
255
n
257
THR
255
A
VAL
256
n
258
VAL
256
A
SER
257
n
259
SER
257
A
SER
258
n
260
SER
258
A
VAL
259
n
261
VAL
259
A
SER
260
n
262
SER
260
A
VAL
261
n
263
VAL
261
A
LEU
262
n
264
LEU
262
A
GLY
263
n
265
GLY
263
A
VAL
264
n
266
VAL
264
A
TYR
265
n
267
TYR
265
A
VAL
266
n
268
VAL
266
A
GLY
267
n
269
GLY
267
A
VAL
268
n
270
VAL
268
A
ALA
269
n
271
ALA
269
A
GLN
270
n
272
GLN
270
A
ALA
271
n
273
ALA
271
A
ALA
272
n
274
ALA
272
A
TYR
273
n
275
TYR
273
A
ASP
274
n
276
ASP
274
A
THR
275
n
277
THR
275
A
ALA
276
n
278
ALA
276
A
VAL
277
n
279
VAL
277
A
ALA
278
n
280
ALA
278
A
ALA
279
n
281
ALA
279
A
LEU
280
n
282
LEU
280
A
GLU
281
n
283
GLU
281
A
ARG
282
n
284
ARG
282
A
ARG
283
n
285
ARG
283
A
PRO
284
n
286
PRO
284
A
GLU
285
n
287
GLU
285
A
PRO
286
n
288
PRO
286
A
PRO
287
n
289
PRO
287
A
GLN
288
n
290
GLN
288
A
ALA
289
n
291
ALA
289
A
ALA
290
n
292
ALA
290
A
ALA
291
n
293
ALA
291
A
LEU
292
n
294
LEU
292
A
THR
293
n
295
THR
293
A
LEU
294
n
296
LEU
294
A
VAL
295
n
297
VAL
295
A
ALA
296
n
298
ALA
296
A
GLU
297
n
299
GLU
297
A
ILE
298
n
300
ILE
298
A
ASP
299
n
301
ASP
299
A
SER
300
n
302
SER
300
A
ARG
301
n
303
ARG
301
A
LEU
302
n
304
LEU
302
A
TYR
303
n
305
TYR
303
A
ALA
304
n
306
ALA
304
A
LEU
305
n
307
LEU
305
A
ARG
306
n
308
ARG
306
A
ALA
307
n
309
ALA
307
A
THR
308
n
310
THR
308
A
ALA
309
n
311
ALA
309
A
GLY
310
n
312
GLY
310
A
SER
311
n
313
SER
311
A
ALA
312
n
314
ALA
312
A
LEU
313
n
315
LEU
313
A
THR
314
n
316
THR
314
A
ALA
315
n
317
ALA
315
A
ALA
316
n
318
ALA
316
A
ASP
317
n
319
ASP
317
A
ALA
318
n
320
ALA
318
A
LEU
319
n
321
LEU
319
A
SER
320
n
322
SER
320
A
ALA
321
n
323
ALA
321
A
ASP
322
n
324
ASP
322
A
LEU
323
n
325
LEU
323
A
SER
324
n
326
SER
324
A
GLY
325
n
327
GLY
325
A
ASP
326
n
328
ASP
326
A
MET
327
n
329
MET
327
A
ASP
328
n
330
ASP
328
A
GLU
329
n
331
GLU
329
A
ARG
330
n
332
ARG
330
A
GLY
331
n
333
GLY
331
A
ARG
332
n
334
ARG
332
A
GLN
333
n
335
GLN
333
A
MET
334
n
336
MET
334
A
MET
335
n
337
MET
335
A
ARG
336
n
338
ARG
336
A
HIS
337
n
339
HIS
337
A
PHE
338
n
340
PHE
338
A
GLN
339
n
341
GLN
339
A
CYS
340
n
342
CYS
340
A
ALA
341
n
343
ALA
341
A
LYS
342
n
344
LYS
342
A
LEU
343
n
345
LEU
343
A
ALA
344
n
346
ALA
344
A
VAL
345
n
347
VAL
345
A
ASN
346
n
348
ASN
346
A
ARG
347
n
349
ARG
347
A
LEU
348
n
350
LEU
348
A
ALA
349
n
351
ALA
349
A
PRO
350
n
352
PRO
350
A
GLU
351
n
353
GLU
351
A
ILE
352
n
354
ILE
352
A
VAL
353
n
355
VAL
353
A
SER
354
n
356
SER
354
A
ASP
355
n
357
ASP
355
A
CYS
356
n
358
CYS
356
A
LEU
357
n
359
LEU
357
A
SER
358
n
360
SER
358
A
LEU
359
n
361
LEU
359
A
VAL
360
n
362
VAL
360
A
GLY
361
n
363
GLY
361
A
GLY
362
n
364
GLY
362
A
ALA
363
n
365
ALA
363
A
SER
364
n
366
SER
364
A
TYR
365
n
367
TYR
365
A
THR
366
n
368
THR
366
A
ALA
367
n
369
ALA
367
A
GLY
368
n
370
GLY
368
A
HIS
369
n
371
HIS
369
A
PRO
370
n
372
PRO
370
A
LEU
371
n
373
LEU
371
A
ALA
372
n
374
ALA
372
A
ARG
373
n
375
ARG
373
A
LEU
374
n
376
LEU
374
A
LEU
375
n
377
LEU
375
A
ARG
376
n
378
ARG
376
A
ASP
377
n
379
ASP
377
A
VAL
378
n
380
VAL
378
A
GLN
379
n
381
GLN
379
A
ALA
380
n
382
ALA
380
A
GLY
381
n
383
GLY
381
A
ARG
382
n
384
ARG
382
A
PHE
383
n
385
PHE
383
A
MET
384
n
386
MET
384
A
GLN
385
n
387
GLN
385
A
PRO
386
n
388
PRO
386
A
TYR
387
n
389
TYR
387
A
ALA
388
n
390
ALA
388
A
TYR
389
n
391
TYR
389
A
VAL
390
n
392
VAL
390
A
ASP
391
n
393
ASP
391
A
ALA
392
n
394
ALA
392
A
VAL
393
n
395
VAL
393
A
ASP
394
n
396
ASP
394
A
PHE
395
n
397
PHE
395
A
LEU
396
n
398
LEU
396
A
SER
397
n
399
SER
397
A
ALA
398
n
400
ALA
398
A
GLN
399
n
401
GLN
399
A
ALA
400
n
402
ALA
400
A
LEU
401
n
403
LEU
401
A
GLY
402
n
404
GLY
402
A
ILE
403
n
405
ILE
403
A
n
406
404
A
n
407
405
A
n
408
406
A
n
409
407
A
n
410
408
A
n
411
409
A
n
412
410
A
n
413
411
A
n
414
412
A
n
415
413
A
n
416
414
A
n
417
415
A
n
418
416
A
n
419
417
A
n
420
418
A
n
421
419
A
n
422
420
A
n
423
421
A
n
424
422
A
n
425
423
A
n
426
424
A
n
427
425
A
n
428
426
A
n
429
427
A
n
430
428
A
n
431
429
A
n
432
430
A
n
433
431
A
n
434
432
A
n
435
433
A
n
436
434
A
n
437
435
A
n
438
436
A
n
439
437
A
author_and_software_defined_assembly
PISA
4
tetrameric
15270
-130
56120
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
x,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
142
A
N
GLY
144
A
O
VAL
180
A
O
VAL
182
A
N
PHE
179
A
N
PHE
181
A
O
VAL
199
A
O
VAL
201
A
O
ALA
195
A
O
ALA
197
A
N
ALA
183
A
N
ALA
185
A
O
ARG
184
A
O
ARG
186
A
N
LEU
153
A
N
LEU
155
A
N
ARG
154
A
N
ARG
156
A
O
LEU
162
A
O
LEU
164
A
N
VAL
170
A
N
VAL
172
A
O
VAL
223
A
O
VAL
225
A
O
VAL
226
A
O
VAL
228
A
N
THR
207
A
N
THR
209
A
N
LYS
144
A
N
LYS
146
A
O
THR
168
A
O
THR
170
A
O
LEU
162
A
O
LEU
164
A
N
ARG
154
A
N
ARG
156
A
N
LEU
153
A
N
LEU
155
A
O
ARG
184
A
O
ARG
186
A
N
ALA
183
A
N
ALA
185
A
O
ALA
195
A
O
ALA
197
A
N
SER
196
A
N
SER
198
A
O
LEU
238
A
O
LEU
240
1
A
GLY
-1
A
GLY
1
1
Y
1
A
HIS
0
A
HIS
2
1
Y
1
A
MET
1
A
MET
3
1
Y
1
A
PRO
2
A
PRO
4
1
Y
1
A
PRO
3
A
PRO
5
1
Y
1
A
TRP
4
A
TRP
6
1
Y
1
A
THR
5
A
THR
7
1
Y
1
A
ALA
6
A
ALA
8
1
Y
1
A
ARG
7
A
ARG
9
1
Y
1
A
GLN
8
A
GLN
10
1
Y
1
A
ASP
9
A
ASP
11
1
Y
1
A
THR
188
A
THR
190
1
Y
1
A
ASP
189
A
ASP
191
1
Y
1
A
VAL
243
A
VAL
245
1
Y
1
A
GLY
244
A
GLY
246
1
Y
1
A
GLU
404
A
GLU
406
1
Y
1
A
ARG
405
A
ARG
407
1
Y
1
A
ASP
406
A
ASP
408
1
Y
1
A
ASN
407
A
ASN
409
1
Y
1
A
ASN
408
A
ASN
410
1
Y
1
A
TYR
409
A
TYR
411
1
Y
1
A
MET
410
A
MET
412
1
Y
1
A
SER
411
A
SER
413
1
Y
1
A
THR
412
A
THR
414
1
Y
1
A
TRP
413
A
TRP
415
1
Y
1
A
ALA
414
A
ALA
416
1
Y
1
A
LYS
415
A
LYS
417
1
Y
1
A
ARG
416
A
ARG
418
1
Y
1
A
SER
417
A
SER
419
1
Y
1
A
GLY
418
A
GLY
420
1
Y
1
A
GLY
419
A
GLY
421
1
Y
1
A
ASN
420
A
ASN
422
1
Y
1
A
GLY
421
A
GLY
423
1
Y
1
A
LYS
422
A
LYS
424
1
Y
1
A
SER
423
A
SER
425
1
Y
1
A
ALA
424
A
ALA
426
1
Y
1
A
ASP
425
A
ASP
427
1
Y
1
A
ALA
426
A
ALA
428
1
Y
1
A
ALA
427
A
ALA
429
1
Y
1
A
GLY
428
A
GLY
430
1
Y
1
A
PRO
429
A
PRO
431
1
Y
1
A
ARG
430
A
ARG
432
1
Y
1
A
ARG
431
A
ARG
433
1
Y
1
A
PRO
432
A
PRO
434
1
Y
1
A
THR
433
A
THR
435
1
Y
1
A
PRO
434
A
PRO
436
1
Y
1
A
THR
435
A
THR
437
1
Y
1
A
SER
436
A
SER
438
1
Y
1
A
ARG
437
A
ARG
439
1
Y
1
6.24
0.90
118.30
124.54
A
A
A
CB
CG
OD1
ASP
ASP
ASP
93
93
93
N
1
9.27
1.50
119.30
128.57
A
A
A
C
N
CA
ASP
PRO
PRO
241
242
242
Y
1
A
MET
172
73.99
-3.30
1
A
ASP
186
-170.29
59.24
1
A
ARG
240
-96.98
-141.99
27.914
1.08
0.00
0.00
-0.12
0.00
-0.96
0.956
0.925
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.22107
0.16840
0.17108
2.05
50
1420
27721
26300
5.1
94.22
3.574
0.098
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.166
0.160
0.80
0.80
1.40
In-house MIR model
MAXIMUM LIKELIHOOD
MASK
2.05
50
108
3019
25
0
2886
0.009
0.021
2984
1.995
1.981
4074
6.338
5.000
395
29.216
21.833
120
15.898
15.000
452
18.061
15.000
34
0.137
0.200
479
0.008
0.021
2266
1.697
1.500
1943
2.601
2.000
3099
4.327
3.000
1041
6.828
4.500
971
0.236
0.198
2.103
89
1579
20
78.09
2.05
50
3M9V
29420
27721
0
0
.081
.081
1
10.73
3.49
94.2
.196
2.05
2.15
3.5
.196
1.5
80.7
data collection
FRAMBO
phasing
PHASER
refinement
REFMAC
5.5.0066
data reduction
SAINT
data scaling
SADABS
N
X-ray Structure of a KijD3 in Complex with dTDP
1
N
N
2
N
N
3
N
N
A
THR
19
A
THR
21
HELX_P
A
ALA
31
A
ALA
33
1
1
13
A
HIS
32
A
HIS
34
HELX_P
A
GLY
47
A
GLY
49
1
2
16
A
PRO
50
A
PRO
52
HELX_P
A
ASP
60
A
ASP
62
1
3
11
A
GLY
61
A
GLY
63
HELX_P
A
ALA
65
A
ALA
67
5
4
5
A
PRO
68
A
PRO
70
HELX_P
A
GLY
72
A
GLY
74
5
5
5
A
ARG
78
A
ARG
80
HELX_P
A
ASP
93
A
ASP
95
1
6
16
A
ASP
93
A
ASP
95
HELX_P
A
GLY
117
A
GLY
119
1
7
25
A
ASP
118
A
ASP
120
HELX_P
A
ALA
134
A
ALA
136
1
8
17
A
MET
172
A
MET
174
HELX_P
A
GLY
176
A
GLY
178
5
9
5
A
PRO
233
A
PRO
235
HELX_P
A
ASP
235
A
ASP
237
5
10
3
A
ASN
247
A
ASN
249
HELX_P
A
ALA
249
A
ALA
251
5
11
3
A
VAL
250
A
VAL
252
HELX_P
A
VAL
259
A
VAL
261
1
12
10
A
VAL
261
A
VAL
263
HELX_P
A
ARG
282
A
ARG
284
1
13
22
A
GLN
288
A
GLN
290
HELX_P
A
ASP
322
A
ASP
324
1
14
35
A
ASP
326
A
ASP
328
HELX_P
A
GLY
361
A
GLY
363
1
15
36
A
GLY
362
A
GLY
364
HELX_P
A
THR
366
A
THR
368
5
16
5
A
HIS
369
A
HIS
371
HELX_P
A
VAL
378
A
VAL
380
1
17
10
A
GLN
379
A
GLN
381
HELX_P
A
PHE
383
A
PHE
385
5
18
5
A
ALA
388
A
ALA
390
HELX_P
A
LEU
401
A
LEU
403
1
19
14
OXIDOREDUCTASE
KijD3, fatty acyl-CoA dehydrogenase family, kijanose, kijanimicin, FAD, Flavoprotein, Oxidoreductase
A
GLN
385
A
GLN
387
1
A
PRO
386
A
PRO
388
-1.91
A
PRO
386
A
PRO
388
1
A
TYR
387
A
TYR
389
-23.30
B3TMR1_9ACTO
UNP
1
1
B3TMR1
MPPWTARQDSTTGLYAPVTPAGRVLLDRLAAHLPRIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLY
DVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGG
WLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMR
DPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADALS
ADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQA
LGIERDNNYMSTWAKRSGGNGKSADAAGPRRPTPTSR
1
437
3M9V
1
437
B3TMR1
A
1
3
439
1
expression tag
GLY
-1
3M9V
A
B3TMR1
UNP
1
1
expression tag
HIS
0
3M9V
A
B3TMR1
UNP
2
8
6
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
VAL
139
A
VAL
141
A
GLY
142
A
GLY
144
A
HIS
178
A
HIS
180
A
ILE
181
A
ILE
183
A
LEU
194
A
LEU
196
A
THR
200
A
THR
202
A
ALA
183
A
ALA
185
A
THR
185
A
THR
187
A
THR
152
A
THR
154
A
PRO
155
A
PRO
157
A
TRP
161
A
TRP
163
A
VAL
170
A
VAL
172
A
VAL
223
A
VAL
225
A
ILE
232
A
ILE
234
A
PHE
206
A
PHE
208
A
VAL
208
A
VAL
210
A
LYS
144
A
LYS
146
A
ASP
145
A
ASP
147
A
TRP
161
A
TRP
163
A
VAL
170
A
VAL
172
A
THR
152
A
THR
154
A
PRO
155
A
PRO
157
A
ALA
183
A
ALA
185
A
THR
185
A
THR
187
A
LEU
194
A
LEU
196
A
THR
200
A
THR
202
A
VAL
237
A
VAL
239
A
MET
239
A
MET
241
BINDING SITE FOR RESIDUE TYD A 901
A
TYD
901
Software
12
A
THR
109
A
THR
111
12
1_555
A
TYR
112
A
TYR
114
12
1_555
A
GLU
113
A
GLU
115
12
1_555
A
ASN
182
A
ASN
184
12
1_555
A
ARG
240
A
ARG
242
12
1_555
A
VAL
250
A
VAL
252
12
1_555
A
ALA
252
A
ALA
254
12
1_555
A
GLY
253
A
GLY
255
12
1_555
A
GLN
254
A
GLN
256
12
1_555
A
SER
257
A
SER
259
12
1_555
A
ARG
330
A
ARG
332
12
1_555
A
HOH
519
C
HOH
12
1_555
23
I 2 2 2