.028850 .000000 .005337 .000000 .013853 .000000 .000000 .000000 .015334 .00000 .00000 .00000 Sooriyaarachchi, S. Ubhayasekera, W. Mowbray, S.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 100.48 90.00 34.663 72.188 66.322 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N P N 260 N O N 261 N O N 262 N O N 263 N O N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C N 269 N C N 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C N 286 N O N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 R C N 300 N O N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N N Y 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N C N 350 N O N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C N 368 N C N 369 N C N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N doub Y 313 N sing Y 314 N sing N 315 N sing Y 316 N sing Y 317 N doub N 318 N sing Y 319 N doub N 320 N sing Y 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing Y 336 N doub Y 337 N sing Y 338 N sing N 339 N sing Y 340 N doub N 341 N sing Y 342 N doub N 343 N sing Y 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N doub N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 402 657 668 10.1016/j.jmb.2010.07.038 20678502 Conformational changes and ligand recognition of Escherichia coli D-xylose binding protein revealed 2010 10.2210/pdb3m9w/pdb pdb_00003m9w 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2008-03-12 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 0.955 1.0 ID14-4 ESRF 0.955 SYNCHROTRON ESRF BEAMLINE ID14-4 34134.734 D-xylose-binding periplasmic protein 1 man polymer 94.971 PHOSPHATE ION 1 syn non-polymer 18.015 water 94 nat water Xylose binding protein no no KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK QEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKV VGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTV YKPITLLANTAAEIAVELGNGQEPKADTTLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESELHHHHHH KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK QEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKV VGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTV YKPITLLANTAAEIAVELGNGQEPKADTTLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESELHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n K-12 substr. MG1655 sample 511145 Escherichia coli 562 Escherichia coli BL21(AI) plasmid pEXP-5-CT/TOPO 1 2.45 49.79 VAPOR DIFFUSION, HANGING DROP 7.5 21%(w/v) polyethylene glycol 3350, 0.2M ammonium dihydrogen phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 296K 296 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Version format compliance Database references Data collection Database references Derived calculations Refinement description 1 0 2010-08-18 1 1 2011-07-13 1 2 2014-03-05 1 3 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Open liganded xylose binding protein structure from Escherichia coli Close liganded xylose binding protein structure from Escherichia coli RCSB Y PDBJ 2010-03-22 REL REL PO4 PHOSPHATE ION HOH water 2IOY PDB entry 2IOY PDB experimental model PO4 500 2 PO4 PO4 500 A HOH 7 3 HOH HOH 314 A HOH 8 3 HOH HOH 315 A HOH 9 3 HOH HOH 316 A HOH 10 3 HOH HOH 317 A HOH 11 3 HOH HOH 318 A HOH 12 3 HOH HOH 319 A HOH 13 3 HOH HOH 320 A HOH 14 3 HOH HOH 321 A HOH 15 3 HOH HOH 322 A HOH 16 3 HOH HOH 323 A HOH 17 3 HOH HOH 324 A HOH 18 3 HOH HOH 325 A HOH 19 3 HOH HOH 326 A HOH 20 3 HOH HOH 327 A HOH 21 3 HOH HOH 328 A HOH 22 3 HOH HOH 329 A HOH 23 3 HOH HOH 330 A HOH 24 3 HOH HOH 331 A HOH 25 3 HOH HOH 332 A HOH 26 3 HOH HOH 333 A HOH 27 3 HOH HOH 334 A HOH 28 3 HOH HOH 335 A HOH 29 3 HOH HOH 336 A HOH 30 3 HOH HOH 337 A HOH 31 3 HOH HOH 338 A HOH 32 3 HOH HOH 339 A HOH 33 3 HOH HOH 340 A HOH 34 3 HOH HOH 341 A HOH 35 3 HOH HOH 342 A HOH 36 3 HOH HOH 343 A HOH 37 3 HOH HOH 344 A HOH 38 3 HOH HOH 345 A HOH 39 3 HOH HOH 346 A HOH 40 3 HOH HOH 347 A HOH 41 3 HOH HOH 348 A HOH 42 3 HOH HOH 349 A HOH 43 3 HOH HOH 350 A HOH 44 3 HOH HOH 351 A HOH 45 3 HOH HOH 352 A HOH 46 3 HOH HOH 353 A HOH 47 3 HOH HOH 354 A HOH 48 3 HOH HOH 355 A HOH 49 3 HOH HOH 356 A HOH 50 3 HOH HOH 357 A HOH 51 3 HOH HOH 358 A HOH 52 3 HOH HOH 359 A HOH 53 3 HOH HOH 360 A HOH 54 3 HOH HOH 361 A HOH 55 3 HOH HOH 362 A HOH 56 3 HOH HOH 363 A HOH 57 3 HOH HOH 364 A HOH 58 3 HOH HOH 365 A HOH 59 3 HOH HOH 366 A HOH 60 3 HOH HOH 367 A HOH 61 3 HOH HOH 368 A HOH 62 3 HOH HOH 369 A HOH 63 3 HOH HOH 370 A HOH 64 3 HOH HOH 371 A HOH 65 3 HOH HOH 372 A HOH 66 3 HOH HOH 373 A HOH 67 3 HOH HOH 374 A HOH 68 3 HOH HOH 375 A HOH 69 3 HOH HOH 376 A HOH 70 3 HOH HOH 377 A HOH 71 3 HOH HOH 378 A HOH 72 3 HOH HOH 379 A HOH 73 3 HOH HOH 380 A HOH 74 3 HOH HOH 381 A HOH 75 3 HOH HOH 382 A HOH 76 3 HOH HOH 383 A HOH 77 3 HOH HOH 384 A HOH 78 3 HOH HOH 385 A HOH 79 3 HOH HOH 386 A HOH 80 3 HOH HOH 387 A HOH 81 3 HOH HOH 388 A HOH 82 3 HOH HOH 389 A HOH 83 3 HOH HOH 390 A HOH 84 3 HOH HOH 391 A HOH 85 3 HOH HOH 392 A HOH 86 3 HOH HOH 393 A HOH 87 3 HOH HOH 394 A HOH 88 3 HOH HOH 395 A HOH 89 3 HOH HOH 396 A HOH 90 3 HOH HOH 397 A HOH 91 3 HOH HOH 398 A HOH 92 3 HOH HOH 399 A HOH 93 3 HOH HOH 400 A HOH 94 3 HOH HOH 401 A HOH 1 3 HOH HOH 402 A HOH 2 3 HOH HOH 403 A HOH 3 3 HOH HOH 404 A HOH 4 3 HOH HOH 405 A HOH 5 3 HOH HOH 406 A HOH 6 3 HOH HOH 407 A n 1 1 A n 2 2 A VAL 3 n 3 VAL 3 A LYS 4 n 4 LYS 4 A ILE 5 n 5 ILE 5 A GLY 6 n 6 GLY 6 A MET 7 n 7 MET 7 A ALA 8 n 8 ALA 8 A ILE 9 n 9 ILE 9 A ASP 10 n 10 ASP 10 A ASP 11 n 11 ASP 11 A LEU 12 n 12 LEU 12 A ARG 13 n 13 ARG 13 A LEU 14 n 14 LEU 14 A GLU 15 n 15 GLU 15 A ARG 16 n 16 ARG 16 A TRP 17 n 17 TRP 17 A GLN 18 n 18 GLN 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A ARG 21 n 21 ARG 21 A ASP 22 n 22 ASP 22 A ILE 23 n 23 ILE 23 A PHE 24 n 24 PHE 24 A VAL 25 n 25 VAL 25 A LYS 26 n 26 LYS 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A GLU 29 n 29 GLU 29 A SER 30 n 30 SER 30 A LEU 31 n 31 LEU 31 A GLY 32 n 32 GLY 32 A ALA 33 n 33 ALA 33 A LYS 34 n 34 LYS 34 A VAL 35 n 35 VAL 35 A PHE 36 n 36 PHE 36 A VAL 37 n 37 VAL 37 A GLN 38 n 38 GLN 38 A SER 39 n 39 SER 39 A ALA 40 n 40 ALA 40 A ASN 41 n 41 ASN 41 A GLY 42 n 42 GLY 42 A ASN 43 n 43 ASN 43 A GLU 44 n 44 GLU 44 A GLU 45 n 45 GLU 45 A THR 46 n 46 THR 46 A GLN 47 n 47 GLN 47 A MET 48 n 48 MET 48 A SER 49 n 49 SER 49 A GLN 50 n 50 GLN 50 A ILE 51 n 51 ILE 51 A GLU 52 n 52 GLU 52 A ASN 53 n 53 ASN 53 A MET 54 n 54 MET 54 A ILE 55 n 55 ILE 55 A ASN 56 n 56 ASN 56 A ARG 57 n 57 ARG 57 A GLY 58 n 58 GLY 58 A VAL 59 n 59 VAL 59 A ASP 60 n 60 ASP 60 A VAL 61 n 61 VAL 61 A LEU 62 n 62 LEU 62 A VAL 63 n 63 VAL 63 A ILE 64 n 64 ILE 64 A ILE 65 n 65 ILE 65 A PRO 66 n 66 PRO 66 A TYR 67 n 67 TYR 67 A ASN 68 n 68 ASN 68 A GLY 69 n 69 GLY 69 A GLN 70 n 70 GLN 70 A VAL 71 n 71 VAL 71 A LEU 72 n 72 LEU 72 A SER 73 n 73 SER 73 A ASN 74 n 74 ASN 74 A VAL 75 n 75 VAL 75 A VAL 76 n 76 VAL 76 A LYS 77 n 77 LYS 77 A GLU 78 n 78 GLU 78 A ALA 79 n 79 ALA 79 A LYS 80 n 80 LYS 80 A GLN 81 n 81 GLN 81 A GLU 82 n 82 GLU 82 A GLY 83 n 83 GLY 83 A ILE 84 n 84 ILE 84 A LYS 85 n 85 LYS 85 A VAL 86 n 86 VAL 86 A LEU 87 n 87 LEU 87 A ALA 88 n 88 ALA 88 A TYR 89 n 89 TYR 89 A ASP 90 n 90 ASP 90 A ARG 91 n 91 ARG 91 A MET 92 n 92 MET 92 A ILE 93 n 93 ILE 93 A ASN 94 n 94 ASN 94 A ASP 95 n 95 ASP 95 A ALA 96 n 96 ALA 96 A ASP 97 n 97 ASP 97 A ILE 98 n 98 ILE 98 A ASP 99 n 99 ASP 99 A PHE 100 n 100 PHE 100 A TYR 101 n 101 TYR 101 A ILE 102 n 102 ILE 102 A SER 103 n 103 SER 103 A PHE 104 n 104 PHE 104 A ASP 105 n 105 ASP 105 A ASN 106 n 106 ASN 106 A GLU 107 n 107 GLU 107 A LYS 108 n 108 LYS 108 A VAL 109 n 109 VAL 109 A GLY 110 n 110 GLY 110 A GLU 111 n 111 GLU 111 A LEU 112 n 112 LEU 112 A GLN 113 n 113 GLN 113 A ALA 114 n 114 ALA 114 A LYS 115 n 115 LYS 115 A ALA 116 n 116 ALA 116 A LEU 117 n 117 LEU 117 A VAL 118 n 118 VAL 118 A ASP 119 n 119 ASP 119 A ILE 120 n 120 ILE 120 A VAL 121 n 121 VAL 121 A PRO 122 n 122 PRO 122 A GLN 123 n 123 GLN 123 A GLY 124 n 124 GLY 124 A ASN 125 n 125 ASN 125 A TYR 126 n 126 TYR 126 A PHE 127 n 127 PHE 127 A LEU 128 n 128 LEU 128 A MET 129 n 129 MET 129 A GLY 130 n 130 GLY 130 A GLY 131 n 131 GLY 131 A SER 132 n 132 SER 132 A PRO 133 n 133 PRO 133 A VAL 134 n 134 VAL 134 A ASP 135 n 135 ASP 135 A ASN 136 n 136 ASN 136 A ASN 137 n 137 ASN 137 A ALA 138 n 138 ALA 138 A LYS 139 n 139 LYS 139 A LEU 140 n 140 LEU 140 A PHE 141 n 141 PHE 141 A ARG 142 n 142 ARG 142 A ALA 143 n 143 ALA 143 A GLY 144 n 144 GLY 144 A GLN 145 n 145 GLN 145 A MET 146 n 146 MET 146 A LYS 147 n 147 LYS 147 A VAL 148 n 148 VAL 148 A LEU 149 n 149 LEU 149 A LYS 150 n 150 LYS 150 A PRO 151 n 151 PRO 151 A TYR 152 n 152 TYR 152 A VAL 153 n 153 VAL 153 A ASP 154 n 154 ASP 154 A SER 155 n 155 SER 155 A GLY 156 n 156 GLY 156 A LYS 157 n 157 LYS 157 A ILE 158 n 158 ILE 158 A LYS 159 n 159 LYS 159 A VAL 160 n 160 VAL 160 A VAL 161 n 161 VAL 161 A GLY 162 n 162 GLY 162 A ASP 163 n 163 ASP 163 A GLN 164 n 164 GLN 164 A TRP 165 n 165 TRP 165 A VAL 166 n 166 VAL 166 A ASP 167 n 167 ASP 167 A GLY 168 n 168 GLY 168 A TRP 169 n 169 TRP 169 A LEU 170 n 170 LEU 170 A PRO 171 n 171 PRO 171 A GLU 172 n 172 GLU 172 A ASN 173 n 173 ASN 173 A ALA 174 n 174 ALA 174 A LEU 175 n 175 LEU 175 A LYS 176 n 176 LYS 176 A ILE 177 n 177 ILE 177 A MET 178 n 178 MET 178 A GLU 179 n 179 GLU 179 A ASN 180 n 180 ASN 180 A ALA 181 n 181 ALA 181 A LEU 182 n 182 LEU 182 A THR 183 n 183 THR 183 A ALA 184 n 184 ALA 184 A ASN 185 n 185 ASN 185 A ASN 186 n 186 ASN 186 A ASN 187 n 187 ASN 187 A LYS 188 n 188 LYS 188 A ILE 189 n 189 ILE 189 A ASP 190 n 190 ASP 190 A ALA 191 n 191 ALA 191 A VAL 192 n 192 VAL 192 A VAL 193 n 193 VAL 193 A ALA 194 n 194 ALA 194 A SER 195 n 195 SER 195 A ASN 196 n 196 ASN 196 A ASP 197 n 197 ASP 197 A ALA 198 n 198 ALA 198 A THR 199 n 199 THR 199 A ALA 200 n 200 ALA 200 A GLY 201 n 201 GLY 201 A GLY 202 n 202 GLY 202 A ALA 203 n 203 ALA 203 A ILE 204 n 204 ILE 204 A GLN 205 n 205 GLN 205 A ALA 206 n 206 ALA 206 A LEU 207 n 207 LEU 207 A SER 208 n 208 SER 208 A ALA 209 n 209 ALA 209 A GLN 210 n 210 GLN 210 A GLY 211 n 211 GLY 211 A LEU 212 n 212 LEU 212 A SER 213 n 213 SER 213 A GLY 214 n 214 GLY 214 A LYS 215 n 215 LYS 215 A VAL 216 n 216 VAL 216 A ALA 217 n 217 ALA 217 A ILE 218 n 218 ILE 218 A SER 219 n 219 SER 219 A GLY 220 n 220 GLY 220 A GLN 221 n 221 GLN 221 A ASP 222 n 222 ASP 222 A ALA 223 n 223 ALA 223 A ASP 224 n 224 ASP 224 A LEU 225 n 225 LEU 225 A ALA 226 n 226 ALA 226 A GLY 227 n 227 GLY 227 A ILE 228 n 228 ILE 228 A LYS 229 n 229 LYS 229 A ARG 230 n 230 ARG 230 A ILE 231 n 231 ILE 231 A ALA 232 n 232 ALA 232 A ALA 233 n 233 ALA 233 A GLY 234 n 234 GLY 234 A THR 235 n 235 THR 235 A GLN 236 n 236 GLN 236 A THR 237 n 237 THR 237 A MET 238 n 238 MET 238 A THR 239 n 239 THR 239 A VAL 240 n 240 VAL 240 A TYR 241 n 241 TYR 241 A LYS 242 n 242 LYS 242 A PRO 243 n 243 PRO 243 A ILE 244 n 244 ILE 244 A THR 245 n 245 THR 245 A LEU 246 n 246 LEU 246 A LEU 247 n 247 LEU 247 A ALA 248 n 248 ALA 248 A ASN 249 n 249 ASN 249 A THR 250 n 250 THR 250 A ALA 251 n 251 ALA 251 A ALA 252 n 252 ALA 252 A GLU 253 n 253 GLU 253 A ILE 254 n 254 ILE 254 A ALA 255 n 255 ALA 255 A VAL 256 n 256 VAL 256 A GLU 257 n 257 GLU 257 A LEU 258 n 258 LEU 258 A GLY 259 n 259 GLY 259 A ASN 260 n 260 ASN 260 A GLY 261 n 261 GLY 261 A GLN 262 n 262 GLN 262 A GLU 263 n 263 GLU 263 A PRO 264 n 264 PRO 264 A LYS 265 n 265 LYS 265 A ALA 266 n 266 ALA 266 A ASP 267 n 267 ASP 267 A THR 268 n 268 THR 268 A THR 269 n 269 THR 269 A LEU 270 n 270 LEU 270 A ASN 271 n 271 ASN 271 A ASN 272 n 272 ASN 272 A GLY 273 n 273 GLY 273 A LEU 274 n 274 LEU 274 A LYS 275 n 275 LYS 275 A ASP 276 n 276 ASP 276 A VAL 277 n 277 VAL 277 A PRO 278 n 278 PRO 278 A SER 279 n 279 SER 279 A ARG 280 n 280 ARG 280 A LEU 281 n 281 LEU 281 A LEU 282 n 282 LEU 282 A THR 283 n 283 THR 283 A PRO 284 n 284 PRO 284 A ILE 285 n 285 ILE 285 A ASP 286 n 286 ASP 286 A VAL 287 n 287 VAL 287 A ASN 288 n 288 ASN 288 A LYS 289 n 289 LYS 289 A ASN 290 n 290 ASN 290 A ASN 291 n 291 ASN 291 A ILE 292 n 292 ILE 292 A LYS 293 n 293 LYS 293 A ASP 294 n 294 ASP 294 A THR 295 n 295 THR 295 A VAL 296 n 296 VAL 296 A ILE 297 n 297 ILE 297 A LYS 298 n 298 LYS 298 A ASP 299 n 299 ASP 299 A GLY 300 n 300 GLY 300 A PHE 301 n 301 PHE 301 A HIS 302 n 302 HIS 302 A LYS 303 n 303 LYS 303 A GLU 304 n 304 GLU 304 A SER 305 n 305 SER 305 A GLU 306 n 306 GLU 306 A LEU 307 n 307 LEU 307 A n 308 308 A n 309 309 A n 310 310 A n 311 311 A n 312 312 A n 313 313 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 36 A O PHE 36 A N MET 7 A N MET 7 A N GLY 6 A N GLY 6 A O VAL 63 A O VAL 63 A N LEU 62 A N LEU 62 A O LYS 85 A O LYS 85 A N ALA 88 A N ALA 88 A O PHE 100 A O PHE 100 A N SER 103 A N SER 103 A O LEU 282 A O LEU 282 A O VAL 277 A O VAL 277 A N LEU 270 A N LEU 270 A O VAL 161 A O VAL 161 A N TYR 126 A N TYR 126 A N PHE 127 A N PHE 127 A O VAL 193 A O VAL 193 A N VAL 192 A N VAL 192 A O ALA 217 A O ALA 217 A N THR 239 A N THR 239 A O VAL 287 A O VAL 287 1 A LYS 1 A LYS 1 1 Y 1 A GLU 2 A GLU 2 1 Y 1 A HIS 308 A HIS 308 1 Y 1 A HIS 309 A HIS 309 1 Y 1 A HIS 310 A HIS 310 1 Y 1 A HIS 311 A HIS 311 1 Y 1 A HIS 312 A HIS 312 1 Y 1 A HIS 313 A HIS 313 1 Y 1 A ASP 90 67.83 -36.57 1 A ASP 163 -168.24 114.71 1 A TRP 169 56.55 15.04 1 A ASP 222 109.51 -28.77 1 A LEU 274 -178.94 -45.44 1 A THR 295 -117.46 -87.76 29.469 -.31 .00 2.27 -1.08 .00 2.21 .938 .904 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS .26429 .20762 .21032 2.15 20.00 862 16242 5.0 97.41 6.035 .158 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT .278 .225 .80 .80 1.40 PDB entry 2IOY MAXIMUM LIKELIHOOD MASK 2.15 20.00 94 2417 5 0 2318 .010 .022 2350 1.223 1.967 3178 4.909 5.000 304 34.602 26.827 104 16.163 15.000 430 21.834 15.000 8 .079 .200 369 .005 .021 1741 .613 1.500 1508 1.139 2.000 2422 1.698 3.000 842 2.835 4.500 756 .300 .250 2.205 71 1181 20 98.82 2.15 20 3M9W 17127 0.084 1 0.372 2.15 2.27 3.4 2518 1 data collection MxCuBE phasing MOLREP refinement REFMAC 5.4.0073 data reduction MOSFLM data scaling SCALA Open ligand-free crystal structure of xylose binding protein from Escherichia coli 1 N N 2 N N 3 N N A TRP 17 A TRP 17 HELX_P A LEU 31 A LEU 31 1 1 15 A ASN 43 A ASN 43 HELX_P A ARG 57 A ARG 57 1 2 15 A LEU 72 A LEU 72 HELX_P A GLN 81 A GLN 81 1 3 10 A ASP 105 A ASP 105 HELX_P A VAL 121 A VAL 121 1 4 17 A ASP 135 A ASP 135 HELX_P A SER 155 A SER 155 1 5 21 A ASP 167 A ASP 167 HELX_P A TRP 169 A TRP 169 5 6 3 A LEU 170 A LEU 170 HELX_P A ASN 185 A ASN 185 1 7 16 A ASN 196 A ASN 196 HELX_P A ALA 209 A ALA 209 1 8 14 A ASP 224 A ASP 224 HELX_P A GLY 234 A GLY 234 1 9 11 A PRO 243 A PRO 243 HELX_P A ASN 260 A ASN 260 1 10 18 A LYS 303 A LYS 303 HELX_P A LEU 307 A LEU 307 5 11 5 SUGAR BINDING PROTEIN xylose binding protein, xylose, conformational changes, SUGAR BINDING PROTEIN XYLF_ECOLI UNP 1 24 P37387 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK QEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKV VGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTV YKPITLLANTAAEIAVELGNGQEPKADTTLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESEL 24 330 3M9W 1 307 P37387 A 1 1 307 1 expression tag HIS 308 3M9W A P37387 UNP 308 1 expression tag HIS 309 3M9W A P37387 UNP 309 1 expression tag HIS 310 3M9W A P37387 UNP 310 1 expression tag HIS 311 3M9W A P37387 UNP 311 1 expression tag HIS 312 3M9W A P37387 UNP 312 1 expression tag HIS 313 3M9W A P37387 UNP 313 7 4 2 parallel parallel parallel parallel parallel anti-parallel parallel parallel parallel anti-parallel A LYS 34 A LYS 34 A SER 39 A SER 39 A LYS 4 A LYS 4 A ILE 9 A ILE 9 A VAL 61 A VAL 61 A ILE 65 A ILE 65 A LYS 85 A LYS 85 A TYR 89 A TYR 89 A PHE 100 A PHE 100 A PHE 104 A PHE 104 A ASP 276 A ASP 276 A LEU 282 A LEU 282 A THR 268 A THR 268 A ASN 271 A ASN 271 A ILE 158 A ILE 158 A TRP 165 A TRP 165 A GLY 124 A GLY 124 A GLY 130 A GLY 130 A ALA 191 A ALA 191 A ALA 194 A ALA 194 A ALA 217 A ALA 217 A ILE 218 A ILE 218 A THR 239 A THR 239 A TYR 241 A TYR 241 A ILE 285 A ILE 285 A VAL 287 A VAL 287 BINDING SITE FOR RESIDUE PO4 A 500 A PO4 500 Software 4 A TRP 169 A TRP 169 4 1_555 A ASN 196 A ASN 196 4 1_555 A GLN 221 A GLN 221 4 1_555 A ASP 222 A ASP 222 4 1_555 4 P 1 21 1