0.028804 0.000000 0.005344 0.000000 0.013946 0.000000 0.000000 0.000000 0.015327 0.00000 0.00000 0.00000 Sooriyaarachchi, S. Ubhayasekera, W. Mowbray, S.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 100.51 90.00 34.718 71.706 66.356 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C5 H10 O5 150.130 beta-D-xylopyranose beta-D-xylose; D-xylose; xylose D-saccharide, beta linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 R C N 295 N O N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N N Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N C N 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N O N 378 R C N 379 R C N 380 S C N 381 R C N 382 N C N 383 N O N 384 N O N 385 N O N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N sing Y 313 N doub N 314 N sing Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 402 657 668 10.1016/j.jmb.2010.07.038 20678502 Conformational changes and ligand recognition of Escherichia coli D-xylose binding protein revealed 2010 10.2210/pdb3m9x/pdb pdb_00003m9x 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2008-06-29 ADSC QUANTUM 210 SINGLE WAVELENGTH M x-ray 1 0.9334 1.0 ID14-1 ESRF 0.9334 SYNCHROTRON ESRF BEAMLINE ID14-1 34134.734 D-xylose-binding periplasmic protein 1 man polymer 150.130 beta-D-xylopyranose 1 man non-polymer 18.015 water 89 nat water xylose binding protein no no KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK QEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKV VGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTV YKPITLLANTAAEIAVELGNGQEPKADTTLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESELHHHHHH KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK QEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKV VGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTV YKPITLLANTAAEIAVELGNGQEPKADTTLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESELHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n K-12 substr. MG1655 sample 511145 Escherichia coli 562 Escherichia coli BL21(AI) plasmid pEXP-5-CT/TOPO 1 2.44 49.56 VAPOR DIFFUSION, HANGING DROP 7.5 21%(w/v) polyethylene glycol 3350, 0.2M ammonium dihydrogen phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 296K 296 atom_site chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_ref_seq_dif struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Database references Atomic model Data collection Database references Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2010-08-18 1 1 2011-07-13 1 2 2014-03-05 2 0 2020-07-29 2 1 2023-11-01 _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession DXylpb b-D-xylopyranose b-D-Xylp Xyl Open ligand-free crystal structure of xylose binding protein from Escherichia coli Close liganded xylose binding protein structure from Escherichia coli RCSB Y PDBJ 2010-03-22 REL REL XYP beta-D-xylopyranose HOH water 3M9W PDB entry 3M9W PDB experimental model XYP 400 2 XYP XYP 400 A HOH 1 3 HOH HOH 314 A HOH 2 3 HOH HOH 315 A HOH 3 3 HOH HOH 316 A HOH 4 3 HOH HOH 317 A HOH 5 3 HOH HOH 318 A HOH 6 3 HOH HOH 319 A HOH 7 3 HOH HOH 320 A HOH 8 3 HOH HOH 321 A HOH 9 3 HOH HOH 322 A HOH 10 3 HOH HOH 323 A HOH 11 3 HOH HOH 324 A HOH 12 3 HOH HOH 325 A HOH 13 3 HOH HOH 326 A HOH 14 3 HOH HOH 327 A HOH 15 3 HOH HOH 328 A HOH 16 3 HOH HOH 329 A HOH 17 3 HOH HOH 330 A HOH 18 3 HOH HOH 331 A HOH 19 3 HOH HOH 332 A HOH 20 3 HOH HOH 333 A HOH 21 3 HOH HOH 334 A HOH 22 3 HOH HOH 335 A HOH 23 3 HOH HOH 336 A HOH 24 3 HOH HOH 337 A HOH 25 3 HOH HOH 338 A HOH 26 3 HOH HOH 339 A HOH 27 3 HOH HOH 340 A HOH 28 3 HOH HOH 341 A HOH 29 3 HOH HOH 342 A HOH 30 3 HOH HOH 343 A HOH 31 3 HOH HOH 344 A HOH 32 3 HOH HOH 345 A HOH 33 3 HOH HOH 346 A HOH 34 3 HOH HOH 347 A HOH 35 3 HOH HOH 348 A HOH 36 3 HOH HOH 349 A HOH 37 3 HOH HOH 350 A HOH 38 3 HOH HOH 351 A HOH 39 3 HOH HOH 352 A HOH 40 3 HOH HOH 353 A HOH 41 3 HOH HOH 354 A HOH 42 3 HOH HOH 355 A HOH 43 3 HOH HOH 356 A HOH 44 3 HOH HOH 357 A HOH 45 3 HOH HOH 358 A HOH 46 3 HOH HOH 359 A HOH 47 3 HOH HOH 360 A HOH 48 3 HOH HOH 361 A HOH 49 3 HOH HOH 362 A HOH 50 3 HOH HOH 363 A HOH 51 3 HOH HOH 364 A HOH 52 3 HOH HOH 365 A HOH 53 3 HOH HOH 366 A HOH 54 3 HOH HOH 367 A HOH 55 3 HOH HOH 368 A HOH 56 3 HOH HOH 369 A HOH 57 3 HOH HOH 370 A HOH 58 3 HOH HOH 371 A HOH 59 3 HOH HOH 372 A HOH 60 3 HOH HOH 373 A HOH 61 3 HOH HOH 374 A HOH 62 3 HOH HOH 375 A HOH 63 3 HOH HOH 376 A HOH 64 3 HOH HOH 377 A HOH 65 3 HOH HOH 378 A HOH 66 3 HOH HOH 379 A HOH 67 3 HOH HOH 380 A HOH 68 3 HOH HOH 381 A HOH 69 3 HOH HOH 382 A HOH 70 3 HOH HOH 383 A HOH 71 3 HOH HOH 384 A HOH 72 3 HOH HOH 385 A HOH 73 3 HOH HOH 386 A HOH 74 3 HOH HOH 387 A HOH 75 3 HOH HOH 388 A HOH 76 3 HOH HOH 389 A HOH 77 3 HOH HOH 390 A HOH 78 3 HOH HOH 391 A HOH 79 3 HOH HOH 392 A HOH 80 3 HOH HOH 393 A HOH 81 3 HOH HOH 394 A HOH 82 3 HOH HOH 395 A HOH 83 3 HOH HOH 396 A HOH 84 3 HOH HOH 397 A HOH 85 3 HOH HOH 398 A HOH 86 3 HOH HOH 399 A HOH 87 3 HOH HOH 401 A HOH 88 3 HOH HOH 402 A HOH 89 3 HOH HOH 403 A n 1 1 A n 2 2 A VAL 3 n 3 VAL 3 A LYS 4 n 4 LYS 4 A ILE 5 n 5 ILE 5 A GLY 6 n 6 GLY 6 A MET 7 n 7 MET 7 A ALA 8 n 8 ALA 8 A ILE 9 n 9 ILE 9 A ASP 10 n 10 ASP 10 A ASP 11 n 11 ASP 11 A LEU 12 n 12 LEU 12 A ARG 13 n 13 ARG 13 A LEU 14 n 14 LEU 14 A GLU 15 n 15 GLU 15 A ARG 16 n 16 ARG 16 A TRP 17 n 17 TRP 17 A GLN 18 n 18 GLN 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A ARG 21 n 21 ARG 21 A ASP 22 n 22 ASP 22 A ILE 23 n 23 ILE 23 A PHE 24 n 24 PHE 24 A VAL 25 n 25 VAL 25 A LYS 26 n 26 LYS 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A GLU 29 n 29 GLU 29 A SER 30 n 30 SER 30 A LEU 31 n 31 LEU 31 A GLY 32 n 32 GLY 32 A ALA 33 n 33 ALA 33 A LYS 34 n 34 LYS 34 A VAL 35 n 35 VAL 35 A PHE 36 n 36 PHE 36 A VAL 37 n 37 VAL 37 A GLN 38 n 38 GLN 38 A SER 39 n 39 SER 39 A ALA 40 n 40 ALA 40 A ASN 41 n 41 ASN 41 A GLY 42 n 42 GLY 42 A ASN 43 n 43 ASN 43 A GLU 44 n 44 GLU 44 A GLU 45 n 45 GLU 45 A THR 46 n 46 THR 46 A GLN 47 n 47 GLN 47 A MET 48 n 48 MET 48 A SER 49 n 49 SER 49 A GLN 50 n 50 GLN 50 A ILE 51 n 51 ILE 51 A GLU 52 n 52 GLU 52 A ASN 53 n 53 ASN 53 A MET 54 n 54 MET 54 A ILE 55 n 55 ILE 55 A ASN 56 n 56 ASN 56 A ARG 57 n 57 ARG 57 A GLY 58 n 58 GLY 58 A VAL 59 n 59 VAL 59 A ASP 60 n 60 ASP 60 A VAL 61 n 61 VAL 61 A LEU 62 n 62 LEU 62 A VAL 63 n 63 VAL 63 A ILE 64 n 64 ILE 64 A ILE 65 n 65 ILE 65 A PRO 66 n 66 PRO 66 A TYR 67 n 67 TYR 67 A ASN 68 n 68 ASN 68 A GLY 69 n 69 GLY 69 A GLN 70 n 70 GLN 70 A VAL 71 n 71 VAL 71 A LEU 72 n 72 LEU 72 A SER 73 n 73 SER 73 A ASN 74 n 74 ASN 74 A VAL 75 n 75 VAL 75 A VAL 76 n 76 VAL 76 A LYS 77 n 77 LYS 77 A GLU 78 n 78 GLU 78 A ALA 79 n 79 ALA 79 A LYS 80 n 80 LYS 80 A GLN 81 n 81 GLN 81 A GLU 82 n 82 GLU 82 A GLY 83 n 83 GLY 83 A ILE 84 n 84 ILE 84 A LYS 85 n 85 LYS 85 A VAL 86 n 86 VAL 86 A LEU 87 n 87 LEU 87 A ALA 88 n 88 ALA 88 A TYR 89 n 89 TYR 89 A ASP 90 n 90 ASP 90 A ARG 91 n 91 ARG 91 A MET 92 n 92 MET 92 A ILE 93 n 93 ILE 93 A ASN 94 n 94 ASN 94 A ASP 95 n 95 ASP 95 A ALA 96 n 96 ALA 96 A ASP 97 n 97 ASP 97 A ILE 98 n 98 ILE 98 A ASP 99 n 99 ASP 99 A PHE 100 n 100 PHE 100 A TYR 101 n 101 TYR 101 A ILE 102 n 102 ILE 102 A SER 103 n 103 SER 103 A PHE 104 n 104 PHE 104 A ASP 105 n 105 ASP 105 A ASN 106 n 106 ASN 106 A GLU 107 n 107 GLU 107 A LYS 108 n 108 LYS 108 A VAL 109 n 109 VAL 109 A GLY 110 n 110 GLY 110 A GLU 111 n 111 GLU 111 A LEU 112 n 112 LEU 112 A GLN 113 n 113 GLN 113 A ALA 114 n 114 ALA 114 A LYS 115 n 115 LYS 115 A ALA 116 n 116 ALA 116 A LEU 117 n 117 LEU 117 A VAL 118 n 118 VAL 118 A ASP 119 n 119 ASP 119 A ILE 120 n 120 ILE 120 A VAL 121 n 121 VAL 121 A PRO 122 n 122 PRO 122 A GLN 123 n 123 GLN 123 A GLY 124 n 124 GLY 124 A ASN 125 n 125 ASN 125 A TYR 126 n 126 TYR 126 A PHE 127 n 127 PHE 127 A LEU 128 n 128 LEU 128 A MET 129 n 129 MET 129 A GLY 130 n 130 GLY 130 A GLY 131 n 131 GLY 131 A SER 132 n 132 SER 132 A PRO 133 n 133 PRO 133 A VAL 134 n 134 VAL 134 A ASP 135 n 135 ASP 135 A ASN 136 n 136 ASN 136 A ASN 137 n 137 ASN 137 A ALA 138 n 138 ALA 138 A LYS 139 n 139 LYS 139 A LEU 140 n 140 LEU 140 A PHE 141 n 141 PHE 141 A ARG 142 n 142 ARG 142 A ALA 143 n 143 ALA 143 A GLY 144 n 144 GLY 144 A GLN 145 n 145 GLN 145 A MET 146 n 146 MET 146 A LYS 147 n 147 LYS 147 A VAL 148 n 148 VAL 148 A LEU 149 n 149 LEU 149 A LYS 150 n 150 LYS 150 A PRO 151 n 151 PRO 151 A TYR 152 n 152 TYR 152 A VAL 153 n 153 VAL 153 A ASP 154 n 154 ASP 154 A SER 155 n 155 SER 155 A GLY 156 n 156 GLY 156 A LYS 157 n 157 LYS 157 A ILE 158 n 158 ILE 158 A LYS 159 n 159 LYS 159 A VAL 160 n 160 VAL 160 A VAL 161 n 161 VAL 161 A GLY 162 n 162 GLY 162 A ASP 163 n 163 ASP 163 A GLN 164 n 164 GLN 164 A TRP 165 n 165 TRP 165 A VAL 166 n 166 VAL 166 A ASP 167 n 167 ASP 167 A GLY 168 n 168 GLY 168 A TRP 169 n 169 TRP 169 A LEU 170 n 170 LEU 170 A PRO 171 n 171 PRO 171 A GLU 172 n 172 GLU 172 A ASN 173 n 173 ASN 173 A ALA 174 n 174 ALA 174 A LEU 175 n 175 LEU 175 A LYS 176 n 176 LYS 176 A ILE 177 n 177 ILE 177 A MET 178 n 178 MET 178 A GLU 179 n 179 GLU 179 A ASN 180 n 180 ASN 180 A ALA 181 n 181 ALA 181 A LEU 182 n 182 LEU 182 A THR 183 n 183 THR 183 A ALA 184 n 184 ALA 184 A ASN 185 n 185 ASN 185 A ASN 186 n 186 ASN 186 A ASN 187 n 187 ASN 187 A LYS 188 n 188 LYS 188 A ILE 189 n 189 ILE 189 A ASP 190 n 190 ASP 190 A ALA 191 n 191 ALA 191 A VAL 192 n 192 VAL 192 A VAL 193 n 193 VAL 193 A ALA 194 n 194 ALA 194 A SER 195 n 195 SER 195 A ASN 196 n 196 ASN 196 A ASP 197 n 197 ASP 197 A ALA 198 n 198 ALA 198 A THR 199 n 199 THR 199 A ALA 200 n 200 ALA 200 A GLY 201 n 201 GLY 201 A GLY 202 n 202 GLY 202 A ALA 203 n 203 ALA 203 A ILE 204 n 204 ILE 204 A GLN 205 n 205 GLN 205 A ALA 206 n 206 ALA 206 A LEU 207 n 207 LEU 207 A SER 208 n 208 SER 208 A ALA 209 n 209 ALA 209 A GLN 210 n 210 GLN 210 A GLY 211 n 211 GLY 211 A LEU 212 n 212 LEU 212 A SER 213 n 213 SER 213 A GLY 214 n 214 GLY 214 A LYS 215 n 215 LYS 215 A VAL 216 n 216 VAL 216 A ALA 217 n 217 ALA 217 A ILE 218 n 218 ILE 218 A SER 219 n 219 SER 219 A GLY 220 n 220 GLY 220 A GLN 221 n 221 GLN 221 A ASP 222 n 222 ASP 222 A ALA 223 n 223 ALA 223 A ASP 224 n 224 ASP 224 A LEU 225 n 225 LEU 225 A ALA 226 n 226 ALA 226 A GLY 227 n 227 GLY 227 A ILE 228 n 228 ILE 228 A LYS 229 n 229 LYS 229 A ARG 230 n 230 ARG 230 A ILE 231 n 231 ILE 231 A ALA 232 n 232 ALA 232 A ALA 233 n 233 ALA 233 A GLY 234 n 234 GLY 234 A THR 235 n 235 THR 235 A GLN 236 n 236 GLN 236 A THR 237 n 237 THR 237 A MET 238 n 238 MET 238 A THR 239 n 239 THR 239 A VAL 240 n 240 VAL 240 A TYR 241 n 241 TYR 241 A LYS 242 n 242 LYS 242 A PRO 243 n 243 PRO 243 A ILE 244 n 244 ILE 244 A THR 245 n 245 THR 245 A LEU 246 n 246 LEU 246 A LEU 247 n 247 LEU 247 A ALA 248 n 248 ALA 248 A ASN 249 n 249 ASN 249 A THR 250 n 250 THR 250 A ALA 251 n 251 ALA 251 A ALA 252 n 252 ALA 252 A GLU 253 n 253 GLU 253 A ILE 254 n 254 ILE 254 A ALA 255 n 255 ALA 255 A VAL 256 n 256 VAL 256 A GLU 257 n 257 GLU 257 A LEU 258 n 258 LEU 258 A GLY 259 n 259 GLY 259 A ASN 260 n 260 ASN 260 A GLY 261 n 261 GLY 261 A GLN 262 n 262 GLN 262 A GLU 263 n 263 GLU 263 A PRO 264 n 264 PRO 264 A LYS 265 n 265 LYS 265 A ALA 266 n 266 ALA 266 A ASP 267 n 267 ASP 267 A THR 268 n 268 THR 268 A THR 269 n 269 THR 269 A LEU 270 n 270 LEU 270 A ASN 271 n 271 ASN 271 A ASN 272 n 272 ASN 272 A GLY 273 n 273 GLY 273 A LEU 274 n 274 LEU 274 A LYS 275 n 275 LYS 275 A ASP 276 n 276 ASP 276 A VAL 277 n 277 VAL 277 A PRO 278 n 278 PRO 278 A SER 279 n 279 SER 279 A ARG 280 n 280 ARG 280 A LEU 281 n 281 LEU 281 A LEU 282 n 282 LEU 282 A THR 283 n 283 THR 283 A PRO 284 n 284 PRO 284 A ILE 285 n 285 ILE 285 A ASP 286 n 286 ASP 286 A VAL 287 n 287 VAL 287 A ASN 288 n 288 ASN 288 A LYS 289 n 289 LYS 289 A ASN 290 n 290 ASN 290 A ASN 291 n 291 ASN 291 A ILE 292 n 292 ILE 292 A LYS 293 n 293 LYS 293 A ASP 294 n 294 ASP 294 A THR 295 n 295 THR 295 A VAL 296 n 296 VAL 296 A ILE 297 n 297 ILE 297 A LYS 298 n 298 LYS 298 A ASP 299 n 299 ASP 299 A GLY 300 n 300 GLY 300 A PHE 301 n 301 PHE 301 A HIS 302 n 302 HIS 302 A LYS 303 n 303 LYS 303 A GLU 304 n 304 GLU 304 A SER 305 n 305 SER 305 A GLU 306 n 306 GLU 306 A LEU 307 n 307 LEU 307 A n 308 308 A n 309 309 A n 310 310 A n 311 311 A n 312 312 A n 313 313 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 34 A O LYS 34 A N ILE 5 A N ILE 5 A N GLY 6 A N GLY 6 A O VAL 63 A O VAL 63 A N LEU 62 A N LEU 62 A O LYS 85 A O LYS 85 A N ALA 88 A N ALA 88 A O PHE 100 A O PHE 100 A N SER 103 A N SER 103 A O LEU 282 A O LEU 282 A O VAL 277 A O VAL 277 A N LEU 270 A N LEU 270 A O VAL 161 A O VAL 161 A N TYR 126 A N TYR 126 A N PHE 127 A N PHE 127 A O VAL 193 A O VAL 193 A N VAL 192 A N VAL 192 A O ALA 217 A O ALA 217 A N TYR 241 A N TYR 241 A O ILE 285 A O ILE 285 1 A LYS 1 A LYS 1 1 Y 1 A GLU 2 A GLU 2 1 Y 1 A HIS 308 A HIS 308 1 Y 1 A HIS 309 A HIS 309 1 Y 1 A HIS 310 A HIS 310 1 Y 1 A HIS 311 A HIS 311 1 Y 1 A HIS 312 A HIS 312 1 Y 1 A HIS 313 A HIS 313 1 Y 1 A VAL 71 -147.08 39.96 1 A ASP 90 68.58 -46.17 1 A ASP 97 -92.66 55.84 1 A ASP 222 105.38 -30.05 1 A ASN 260 -96.74 31.68 1 A LEU 274 -161.91 -32.76 1 A THR 295 -108.75 -81.49 26.790 0.10 0.00 0.61 -0.67 0.00 0.80 0.934 0.901 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.25573 0.19679 0.19979 2.20 30.00 696 13126 5.0 84.46 6.795 0.172 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.390 0.260 0.80 0.80 1.40 PDB entry 3M9W MAXIMUM LIKELIHOOD MASK 2.20 30.00 89 2417 10 0 2318 0.017 0.022 2356 1.633 1.970 3186 5.560 5.000 304 38.298 26.827 104 18.183 15.000 430 18.410 15.000 8 0.114 0.200 373 0.007 0.021 1741 0.914 1.500 1508 1.686 2.000 2422 2.513 3.000 848 4.143 4.500 764 0.337 0.269 2.257 38 623 20 54.58 2.1 30 3M9X 14880 0.079 1 0.363 2.1 2.21 2.2 1 data collection MxCuBE phasing MOLREP refinement REFMAC 5.5.0072 data reduction MOSFLM data scaling SCALA Open liganded crystal structure of xylose binding protein from Escherichia coli 1 N N 2 N N 3 N N A TRP 17 A TRP 17 HELX_P A LEU 31 A LEU 31 1 1 15 A ASN 43 A ASN 43 HELX_P A GLY 58 A GLY 58 1 2 16 A LEU 72 A LEU 72 HELX_P A GLU 82 A GLU 82 1 3 11 A ASP 105 A ASP 105 HELX_P A ASP 119 A ASP 119 1 4 15 A ASP 135 A ASP 135 HELX_P A SER 155 A SER 155 1 5 21 A ASP 167 A ASP 167 HELX_P A TRP 169 A TRP 169 5 6 3 A LEU 170 A LEU 170 HELX_P A ASN 185 A ASN 185 1 7 16 A ASN 196 A ASN 196 HELX_P A ALA 209 A ALA 209 1 8 14 A ASP 224 A ASP 224 HELX_P A ALA 233 A ALA 233 1 9 10 A PRO 243 A PRO 243 HELX_P A ASN 260 A ASN 260 1 10 18 A LYS 303 A LYS 303 HELX_P A LEU 307 A LEU 307 5 11 5 SUGAR BINDING PROTEIN xylose binding protein, xylose, conformational changes, SUGAR BINDING PROTEIN XYLF_ECOLI UNP 1 24 P37387 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK QEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKV VGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTV YKPITLLANTAAEIAVELGNGQEPKADTTLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESEL 24 330 3M9X 1 307 P37387 A 1 1 307 1 expression tag HIS 308 3M9X A P37387 UNP 308 1 expression tag HIS 309 3M9X A P37387 UNP 309 1 expression tag HIS 310 3M9X A P37387 UNP 310 1 expression tag HIS 311 3M9X A P37387 UNP 311 1 expression tag HIS 312 3M9X A P37387 UNP 312 1 expression tag HIS 313 3M9X A P37387 UNP 313 7 4 2 parallel parallel parallel parallel parallel anti-parallel parallel parallel parallel anti-parallel A LYS 34 A LYS 34 A SER 39 A SER 39 A LYS 4 A LYS 4 A ILE 9 A ILE 9 A VAL 61 A VAL 61 A ILE 65 A ILE 65 A LYS 85 A LYS 85 A TYR 89 A TYR 89 A PHE 100 A PHE 100 A PHE 104 A PHE 104 A ASP 276 A ASP 276 A LEU 282 A LEU 282 A THR 268 A THR 268 A ASN 271 A ASN 271 A ILE 158 A ILE 158 A TRP 165 A TRP 165 A GLY 124 A GLY 124 A GLY 130 A GLY 130 A ALA 191 A ALA 191 A ALA 194 A ALA 194 A ALA 217 A ALA 217 A ILE 218 A ILE 218 A THR 239 A THR 239 A TYR 241 A TYR 241 A ILE 285 A ILE 285 A VAL 287 A VAL 287 4 P 1 21 1