0.010014 0.005782 0.000000 0.000000 0.011563 0.000000 0.000000 0.000000 0.003075 0.00000 0.00000 0.00000 O'Gara, M. Klimasauskas, S. Roberts, R.J. Cheng, X. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 99.860 99.860 325.200 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C14 H20 N6 O5 S 384.411 n S-ADENOSYL-L-HOMOCYSTEINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N C N 437 N S N 438 N C N 439 N O N 440 N O N 441 N C N 442 S C N 443 N O N 444 S C N 445 N O N 446 R C N 447 N O N 448 R C Y 449 N N Y 450 N C Y 451 N N Y 452 N C Y 453 N C N 454 N N Y 455 N N Y 456 N C Y 457 N N Y 458 N C N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N N N 480 S C N 481 N C N 482 N O N 483 N C N 484 N O N 485 N O N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N N N 494 S C N 495 N C N 496 N O N 497 R C N 498 N O N 499 N C N 500 N O N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N N N 511 S C N 512 N C N 513 N O N 514 N C Y 515 N C Y 516 N C Y 517 N C Y 518 N N Y 519 N C Y 520 N C Y 521 N C Y 522 N C Y 523 N C N 524 N O N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N N N 538 S C N 539 N C N 540 N O N 541 N C Y 542 N C Y 543 N C Y 544 N C Y 545 N C Y 546 N C Y 547 N C N 548 N O N 549 N O N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N H N 560 N H N 561 N N N 562 S C N 563 N C N 564 N O N 565 N C N 566 N C N 567 N C N 568 N O N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N doub N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing Y 459 N sing Y 460 N sing Y 461 N doub N 462 N sing Y 463 N sing Y 464 N sing Y 465 N doub N 466 N sing Y 467 N doub N 468 N sing N 469 N sing Y 470 N sing Y 471 N doub N 472 N sing Y 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N doub N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N doub N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N doub N 510 N sing N 511 N sing N 512 N sing N 513 N sing Y 514 N doub Y 515 N sing Y 516 N sing N 517 N sing Y 518 N doub Y 519 N sing Y 520 N sing N 521 N sing Y 522 N sing Y 523 N doub N 524 N sing Y 525 N doub N 526 N sing Y 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N doub N 538 N sing N 539 N sing N 540 N sing N 541 N sing Y 542 N doub Y 543 N sing Y 544 N sing N 545 N sing Y 546 N doub N 547 N sing Y 548 N doub N 549 N sing Y 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N doub N 562 N sing N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N sing N 571 N sing N 572 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 261 634 645 10.1006/jmbi.1996.0489 8800212 Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures for HhaL methyltransferase-DNA-AdoHcy complexes. 1996 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 76 357 HhaI Methyltransferase Flips its Target Base Out of the DNA Helix 1994 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 74 299 Crystal Structure of the HhaI DNA Methyltransferase Complexed with S-Adenosyl- L-Methionine 1993 10.2210/pdb3mht/pdb pdb_00003mht 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 IMAGE PLATE MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.0 X12C NSLS SYNCHROTRON NSLS BEAMLINE X12C 3662.404 DNA (5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3') 1 syn polymer 3966.597 DNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3') 1 syn polymer 37042.207 PROTEIN (HHAI METHYLTRANSFERASE (E.C.2.1.1.73)) 1 nat polymer 384.411 S-ADENOSYL-L-HOMOCYSTEINE 1 syn non-polymer 18.015 water 70 nat water no no (DG)(DA)(DT)(DA)(DG)(DC)(DG)(DC)(DT)(DA)(DT)(DC) GATAGCGCTATC C polydeoxyribonucleotide no no (DT)(DG)(DA)(DT)(DA)(DG)(DC)(DG)(DC)(DT)(DA)(DT)(DC) TGATAGCGCTATC D polydeoxyribonucleotide no no MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP QKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER IYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGS SLNFKPY MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP QKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER IYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGS SLNFKPY A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Haemophilus sample 726 Haemophilus haemolyticus 3.47 64.55 5.688 C 402 D 433 -8.181 C_DG402:DC433_D 1 -6.153 0.826 0.278 0.169 -2.368 1 20 C 403 D 432 1.423 C_DA403:DT432_D 2 -6.970 0.120 0.279 -0.177 -4.351 1 20 C 404 D 431 -6.751 C_DT404:DA431_D 3 -8.167 -0.008 0.383 -0.206 7.184 1 20 C 405 D 430 -2.766 C_DA405:DT430_D 4 -9.603 0.879 0.004 -0.133 9.123 1 19 C 406 D 429 -7.437 C_DG406:DC429_D 5 -2.219 -0.121 -0.299 -0.099 3.607 1 19 C 407 D 428 -11.031 C_DC407:DG428_D 6 -7.878 -0.369 -0.107 -0.217 -1.247 1 19 C 409 D 426 3.574 C_DC409:DG426_D 7 -23.123 0.295 0.176 -0.044 17.912 1 20 C 410 D 425 3.321 C_DT410:DA425_D 8 -11.428 -0.650 -0.402 -0.373 -3.651 1 20 C 411 D 424 1.748 C_DA411:DT424_D 9 -7.817 0.379 -0.393 -0.186 4.062 1 20 C 412 D 423 -0.256 C_DT412:DA423_D 10 -5.932 0.132 -0.341 0.038 19.932 1 19 C 413 D 422 -4.482 C_DC413:DG422_D 11 -8.497 -0.911 -0.641 -0.285 3.204 32.310 C C 402 403 16.519 D D 433 432 3.462 9.069 -0.154 -0.468 CC_DG402DA403:DT432DC433_DD 1 -2.024 3.687 30.979 -2.515 -0.096 3.446 29.298 C C 403 404 -0.698 D D 432 431 3.396 -0.353 -0.554 -0.933 CC_DA403DT404:DA431DT432_DD 2 -3.028 5.996 29.142 -1.765 0.409 3.317 41.597 C C 404 405 -1.235 D D 431 430 3.242 -0.875 0.875 0.422 CC_DT404DA405:DT430DA431_DD 3 5.493 -7.756 41.240 0.687 -0.646 3.380 26.944 C C 405 406 7.896 D D 430 429 3.371 3.668 -1.098 0.066 CC_DA405DG406:DC429DT430_DD 4 -0.804 1.732 26.686 -0.832 2.143 3.788 34.476 C C 406 407 -13.097 D D 429 428 3.719 -7.696 0.829 -0.987 CC_DG406DC407:DG428DC429_DD 5 -2.125 3.617 33.566 -0.274 -1.782 7.289 56.121 C C 407 409 -2.799 D D 428 426 7.379 -2.624 0.013 0.240 CC_DC407DC409:DG426DG428_DD 6 8.655 -9.234 55.446 0.592 1.099 2.861 28.669 C C 409 410 16.641 D D 426 425 2.973 8.081 0.035 0.191 CC_DC409DT410:DA425DG426_DD 7 5.516 -11.359 26.980 -1.292 1.074 4.117 46.905 C C 410 411 14.568 D D 425 424 4.106 11.490 -0.315 0.557 CC_DT410DA411:DT424DA425_DD 8 0.873 -1.107 45.545 -0.514 0.488 3.023 28.124 C C 411 412 9.531 D D 424 423 3.130 4.610 0.304 -0.322 CC_DA411DT412:DA423DT424_DD 9 -1.131 2.337 27.729 -1.688 -0.877 2.850 20.094 C C 412 413 25.069 D D 423 422 3.009 8.353 0.506 0.244 CC_DT412DC413:DG422DA423_DD 10 5.736 -17.214 17.375 -3.013 1.098 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1997-01-27 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y NDB 1996-07-24 REL SAH S-ADENOSYL-L-HOMOCYSTEINE HOH water SAH 328 4 SAH SAH 328 A HOH 341 5 HOH HOH 341 C HOH 362 5 HOH HOH 362 C HOH 334 5 HOH HOH 334 D HOH 339 5 HOH HOH 339 D HOH 346 5 HOH HOH 346 D HOH 375 5 HOH HOH 375 D HOH 379 5 HOH HOH 379 D HOH 380 5 HOH HOH 380 D HOH 391 5 HOH HOH 391 D HOH 395 5 HOH HOH 395 D HOH 410 5 HOH HOH 410 D HOH 411 5 HOH HOH 411 D HOH 329 5 HOH HOH 329 A HOH 330 5 HOH HOH 330 A HOH 331 5 HOH HOH 331 A HOH 332 5 HOH HOH 332 A HOH 333 5 HOH HOH 333 A HOH 335 5 HOH HOH 335 A HOH 336 5 HOH HOH 336 A HOH 337 5 HOH HOH 337 A HOH 338 5 HOH HOH 338 A HOH 340 5 HOH HOH 340 A HOH 342 5 HOH HOH 342 A HOH 344 5 HOH HOH 344 A HOH 345 5 HOH HOH 345 A HOH 349 5 HOH HOH 349 A HOH 350 5 HOH HOH 350 A HOH 351 5 HOH HOH 351 A HOH 352 5 HOH HOH 352 A HOH 353 5 HOH HOH 353 A HOH 355 5 HOH HOH 355 A HOH 356 5 HOH HOH 356 A HOH 358 5 HOH HOH 358 A HOH 359 5 HOH HOH 359 A HOH 361 5 HOH HOH 361 A HOH 363 5 HOH HOH 363 A HOH 364 5 HOH HOH 364 A HOH 365 5 HOH HOH 365 A HOH 366 5 HOH HOH 366 A HOH 367 5 HOH HOH 367 A HOH 370 5 HOH HOH 370 A HOH 371 5 HOH HOH 371 A HOH 372 5 HOH HOH 372 A HOH 374 5 HOH HOH 374 A HOH 376 5 HOH HOH 376 A HOH 377 5 HOH HOH 377 A HOH 381 5 HOH HOH 381 A HOH 382 5 HOH HOH 382 A HOH 385 5 HOH HOH 385 A HOH 386 5 HOH HOH 386 A HOH 387 5 HOH HOH 387 A HOH 388 5 HOH HOH 388 A HOH 389 5 HOH HOH 389 A HOH 392 5 HOH HOH 392 A HOH 393 5 HOH HOH 393 A HOH 394 5 HOH HOH 394 A HOH 396 5 HOH HOH 396 A HOH 397 5 HOH HOH 397 A HOH 398 5 HOH HOH 398 A HOH 399 5 HOH HOH 399 A HOH 400 5 HOH HOH 400 A HOH 401 5 HOH HOH 401 A HOH 402 5 HOH HOH 402 A HOH 404 5 HOH HOH 404 A HOH 405 5 HOH HOH 405 A HOH 406 5 HOH HOH 406 A HOH 407 5 HOH HOH 407 A HOH 409 5 HOH HOH 409 A HOH 413 5 HOH HOH 413 A HOH 414 5 HOH HOH 414 A G 402 n 1 DG 402 C A 403 n 2 DA 403 C T 404 n 3 DT 404 C A 405 n 4 DA 405 C G 406 n 5 DG 406 C C 407 n 6 DC 407 C G 408 n 7 DG 408 C C 409 n 8 DC 409 C T 410 n 9 DT 410 C A 411 n 10 DA 411 C T 412 n 11 DT 412 C C 413 n 12 DC 413 C T 421 n 1 DT 421 D G 422 n 2 DG 422 D A 423 n 3 DA 423 D T 424 n 4 DT 424 D A 425 n 5 DA 425 D G 426 n 6 DG 426 D C 427 n 7 DC 427 D G 428 n 8 DG 428 D C 429 n 9 DC 429 D T 430 n 10 DT 430 D A 431 n 11 DA 431 D T 432 n 12 DT 432 D C 433 n 13 DC 433 D MET 1 n 1 MET 1 A ILE 2 n 2 ILE 2 A GLU 3 n 3 GLU 3 A ILE 4 n 4 ILE 4 A LYS 5 n 5 LYS 5 A ASP 6 n 6 ASP 6 A LYS 7 n 7 LYS 7 A GLN 8 n 8 GLN 8 A LEU 9 n 9 LEU 9 A THR 10 n 10 THR 10 A GLY 11 n 11 GLY 11 A LEU 12 n 12 LEU 12 A ARG 13 n 13 ARG 13 A PHE 14 n 14 PHE 14 A ILE 15 n 15 ILE 15 A ASP 16 n 16 ASP 16 A LEU 17 n 17 LEU 17 A PHE 18 n 18 PHE 18 A ALA 19 n 19 ALA 19 A GLY 20 n 20 GLY 20 A LEU 21 n 21 LEU 21 A GLY 22 n 22 GLY 22 A GLY 23 n 23 GLY 23 A PHE 24 n 24 PHE 24 A ARG 25 n 25 ARG 25 A LEU 26 n 26 LEU 26 A ALA 27 n 27 ALA 27 A LEU 28 n 28 LEU 28 A GLU 29 n 29 GLU 29 A SER 30 n 30 SER 30 A CYS 31 n 31 CYS 31 A GLY 32 n 32 GLY 32 A ALA 33 n 33 ALA 33 A GLU 34 n 34 GLU 34 A CYS 35 n 35 CYS 35 A VAL 36 n 36 VAL 36 A TYR 37 n 37 TYR 37 A SER 38 n 38 SER 38 A ASN 39 n 39 ASN 39 A GLU 40 n 40 GLU 40 A TRP 41 n 41 TRP 41 A ASP 42 n 42 ASP 42 A LYS 43 n 43 LYS 43 A TYR 44 n 44 TYR 44 A ALA 45 n 45 ALA 45 A GLN 46 n 46 GLN 46 A GLU 47 n 47 GLU 47 A VAL 48 n 48 VAL 48 A TYR 49 n 49 TYR 49 A GLU 50 n 50 GLU 50 A MET 51 n 51 MET 51 A ASN 52 n 52 ASN 52 A PHE 53 n 53 PHE 53 A GLY 54 n 54 GLY 54 A GLU 55 n 55 GLU 55 A LYS 56 n 56 LYS 56 A PRO 57 n 57 PRO 57 A GLU 58 n 58 GLU 58 A GLY 59 n 59 GLY 59 A ASP 60 n 60 ASP 60 A ILE 61 n 61 ILE 61 A THR 62 n 62 THR 62 A GLN 63 n 63 GLN 63 A VAL 64 n 64 VAL 64 A ASN 65 n 65 ASN 65 A GLU 66 n 66 GLU 66 A LYS 67 n 67 LYS 67 A THR 68 n 68 THR 68 A ILE 69 n 69 ILE 69 A PRO 70 n 70 PRO 70 A ASP 71 n 71 ASP 71 A HIS 72 n 72 HIS 72 A ASP 73 n 73 ASP 73 A ILE 74 n 74 ILE 74 A LEU 75 n 75 LEU 75 A CYS 76 n 76 CYS 76 A ALA 77 n 77 ALA 77 A GLY 78 n 78 GLY 78 A PHE 79 n 79 PHE 79 A PRO 80 n 80 PRO 80 A CYS 81 n 81 CYS 81 A GLN 82 n 82 GLN 82 A ALA 83 n 83 ALA 83 A PHE 84 n 84 PHE 84 A SER 85 n 85 SER 85 A ILE 86 n 86 ILE 86 A SER 87 n 87 SER 87 A GLY 88 n 88 GLY 88 A LYS 89 n 89 LYS 89 A GLN 90 n 90 GLN 90 A LYS 91 n 91 LYS 91 A GLY 92 n 92 GLY 92 A PHE 93 n 93 PHE 93 A GLU 94 n 94 GLU 94 A ASP 95 n 95 ASP 95 A SER 96 n 96 SER 96 A ARG 97 n 97 ARG 97 A GLY 98 n 98 GLY 98 A THR 99 n 99 THR 99 A LEU 100 n 100 LEU 100 A PHE 101 n 101 PHE 101 A PHE 102 n 102 PHE 102 A ASP 103 n 103 ASP 103 A ILE 104 n 104 ILE 104 A ALA 105 n 105 ALA 105 A ARG 106 n 106 ARG 106 A ILE 107 n 107 ILE 107 A VAL 108 n 108 VAL 108 A ARG 109 n 109 ARG 109 A GLU 110 n 110 GLU 110 A LYS 111 n 111 LYS 111 A LYS 112 n 112 LYS 112 A PRO 113 n 113 PRO 113 A LYS 114 n 114 LYS 114 A VAL 115 n 115 VAL 115 A VAL 116 n 116 VAL 116 A PHE 117 n 117 PHE 117 A MET 118 n 118 MET 118 A GLU 119 n 119 GLU 119 A ASN 120 n 120 ASN 120 A VAL 121 n 121 VAL 121 A LYS 122 n 122 LYS 122 A ASN 123 n 123 ASN 123 A PHE 124 n 124 PHE 124 A ALA 125 n 125 ALA 125 A SER 126 n 126 SER 126 A HIS 127 n 127 HIS 127 A ASP 128 n 128 ASP 128 A ASN 129 n 129 ASN 129 A GLY 130 n 130 GLY 130 A ASN 131 n 131 ASN 131 A THR 132 n 132 THR 132 A LEU 133 n 133 LEU 133 A GLU 134 n 134 GLU 134 A VAL 135 n 135 VAL 135 A VAL 136 n 136 VAL 136 A LYS 137 n 137 LYS 137 A ASN 138 n 138 ASN 138 A THR 139 n 139 THR 139 A MET 140 n 140 MET 140 A ASN 141 n 141 ASN 141 A GLU 142 n 142 GLU 142 A LEU 143 n 143 LEU 143 A ASP 144 n 144 ASP 144 A TYR 145 n 145 TYR 145 A SER 146 n 146 SER 146 A PHE 147 n 147 PHE 147 A HIS 148 n 148 HIS 148 A ALA 149 n 149 ALA 149 A LYS 150 n 150 LYS 150 A VAL 151 n 151 VAL 151 A LEU 152 n 152 LEU 152 A ASN 153 n 153 ASN 153 A ALA 154 n 154 ALA 154 A LEU 155 n 155 LEU 155 A ASP 156 n 156 ASP 156 A TYR 157 n 157 TYR 157 A GLY 158 n 158 GLY 158 A ILE 159 n 159 ILE 159 A PRO 160 n 160 PRO 160 A GLN 161 n 161 GLN 161 A LYS 162 n 162 LYS 162 A ARG 163 n 163 ARG 163 A GLU 164 n 164 GLU 164 A ARG 165 n 165 ARG 165 A ILE 166 n 166 ILE 166 A TYR 167 n 167 TYR 167 A MET 168 n 168 MET 168 A ILE 169 n 169 ILE 169 A CYS 170 n 170 CYS 170 A PHE 171 n 171 PHE 171 A ARG 172 n 172 ARG 172 A ASN 173 n 173 ASN 173 A ASP 174 n 174 ASP 174 A LEU 175 n 175 LEU 175 A ASN 176 n 176 ASN 176 A ILE 177 n 177 ILE 177 A GLN 178 n 178 GLN 178 A ASN 179 n 179 ASN 179 A PHE 180 n 180 PHE 180 A GLN 181 n 181 GLN 181 A PHE 182 n 182 PHE 182 A PRO 183 n 183 PRO 183 A LYS 184 n 184 LYS 184 A PRO 185 n 185 PRO 185 A PHE 186 n 186 PHE 186 A GLU 187 n 187 GLU 187 A LEU 188 n 188 LEU 188 A ASN 189 n 189 ASN 189 A THR 190 n 190 THR 190 A PHE 191 n 191 PHE 191 A VAL 192 n 192 VAL 192 A LYS 193 n 193 LYS 193 A ASP 194 n 194 ASP 194 A LEU 195 n 195 LEU 195 A LEU 196 n 196 LEU 196 A LEU 197 n 197 LEU 197 A PRO 198 n 198 PRO 198 A ASP 199 n 199 ASP 199 A SER 200 n 200 SER 200 A GLU 201 n 201 GLU 201 A VAL 202 n 202 VAL 202 A GLU 203 n 203 GLU 203 A HIS 204 n 204 HIS 204 A LEU 205 n 205 LEU 205 A VAL 206 n 206 VAL 206 A ILE 207 n 207 ILE 207 A ASP 208 n 208 ASP 208 A ARG 209 n 209 ARG 209 A LYS 210 n 210 LYS 210 A ASP 211 n 211 ASP 211 A LEU 212 n 212 LEU 212 A VAL 213 n 213 VAL 213 A MET 214 n 214 MET 214 A THR 215 n 215 THR 215 A ASN 216 n 216 ASN 216 A GLN 217 n 217 GLN 217 A GLU 218 n 218 GLU 218 A ILE 219 n 219 ILE 219 A GLU 220 n 220 GLU 220 A GLN 221 n 221 GLN 221 A THR 222 n 222 THR 222 A THR 223 n 223 THR 223 A PRO 224 n 224 PRO 224 A LYS 225 n 225 LYS 225 A THR 226 n 226 THR 226 A VAL 227 n 227 VAL 227 A ARG 228 n 228 ARG 228 A LEU 229 n 229 LEU 229 A GLY 230 n 230 GLY 230 A ILE 231 n 231 ILE 231 A VAL 232 n 232 VAL 232 A GLY 233 n 233 GLY 233 A LYS 234 n 234 LYS 234 A GLY 235 n 235 GLY 235 A GLY 236 n 236 GLY 236 A GLN 237 n 237 GLN 237 A GLY 238 n 238 GLY 238 A GLU 239 n 239 GLU 239 A ARG 240 n 240 ARG 240 A ILE 241 n 241 ILE 241 A TYR 242 n 242 TYR 242 A SER 243 n 243 SER 243 A THR 244 n 244 THR 244 A ARG 245 n 245 ARG 245 A GLY 246 n 246 GLY 246 A ILE 247 n 247 ILE 247 A ALA 248 n 248 ALA 248 A ILE 249 n 249 ILE 249 A THR 250 n 250 THR 250 A LEU 251 n 251 LEU 251 A SER 252 n 252 SER 252 A ALA 253 n 253 ALA 253 A TYR 254 n 254 TYR 254 A GLY 255 n 255 GLY 255 A GLY 256 n 256 GLY 256 A GLY 257 n 257 GLY 257 A ILE 258 n 258 ILE 258 A PHE 259 n 259 PHE 259 A ALA 260 n 260 ALA 260 A LYS 261 n 261 LYS 261 A THR 262 n 262 THR 262 A GLY 263 n 263 GLY 263 A GLY 264 n 264 GLY 264 A TYR 265 n 265 TYR 265 A LEU 266 n 266 LEU 266 A VAL 267 n 267 VAL 267 A ASN 268 n 268 ASN 268 A GLY 269 n 269 GLY 269 A LYS 270 n 270 LYS 270 A THR 271 n 271 THR 271 A ARG 272 n 272 ARG 272 A LYS 273 n 273 LYS 273 A LEU 274 n 274 LEU 274 A HIS 275 n 275 HIS 275 A PRO 276 n 276 PRO 276 A ARG 277 n 277 ARG 277 A GLU 278 n 278 GLU 278 A CYS 279 n 279 CYS 279 A ALA 280 n 280 ALA 280 A ARG 281 n 281 ARG 281 A VAL 282 n 282 VAL 282 A MET 283 n 283 MET 283 A GLY 284 n 284 GLY 284 A TYR 285 n 285 TYR 285 A PRO 286 n 286 PRO 286 A ASP 287 n 287 ASP 287 A SER 288 n 288 SER 288 A TYR 289 n 289 TYR 289 A LYS 290 n 290 LYS 290 A VAL 291 n 291 VAL 291 A HIS 292 n 292 HIS 292 A PRO 293 n 293 PRO 293 A SER 294 n 294 SER 294 A THR 295 n 295 THR 295 A SER 296 n 296 SER 296 A GLN 297 n 297 GLN 297 A ALA 298 n 298 ALA 298 A TYR 299 n 299 TYR 299 A LYS 300 n 300 LYS 300 A GLN 301 n 301 GLN 301 A PHE 302 n 302 PHE 302 A GLY 303 n 303 GLY 303 A ASN 304 n 304 ASN 304 A SER 305 n 305 SER 305 A VAL 306 n 306 VAL 306 A VAL 307 n 307 VAL 307 A ILE 308 n 308 ILE 308 A ASN 309 n 309 ASN 309 A VAL 310 n 310 VAL 310 A LEU 311 n 311 LEU 311 A GLN 312 n 312 GLN 312 A TYR 313 n 313 TYR 313 A ILE 314 n 314 ILE 314 A ALA 315 n 315 ALA 315 A TYR 316 n 316 TYR 316 A ASN 317 n 317 ASN 317 A ILE 318 n 318 ILE 318 A GLY 319 n 319 GLY 319 A SER 320 n 320 SER 320 A SER 321 n 321 SER 321 A LEU 322 n 322 LEU 322 A ASN 323 n 323 ASN 323 A PHE 324 n 324 PHE 324 A LYS 325 n 325 LYS 325 A PRO 326 n 326 PRO 326 A TYR 327 n 327 TYR 327 A author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O SER 146 C O SER 146 A N PHE 171 C N PHE 171 A O ILE 166 C O ILE 166 A N ASN 120 C N ASN 120 A O VAL 115 C O VAL 115 A N LEU 75 C N LEU 75 A O ILE 74 C O ILE 74 A N ILE 15 C N ILE 15 A O PHE 14 C O PHE 14 A N GLU 34 C N GLU 34 A O VAL 213 C O VAL 213 A N ILE 231 C N ILE 231 A O LEU 229 C O LEU 229 A N ILE 241 C N ILE 241 A O TYR 242 C O TYR 242 A N GLY 264 C N GLY 264 A O TYR 265 C O TYR 265 A N ARG 272 C N ARG 272 1 A A NE2 O GLN HOH 82 376 1.82 1 C DA 403 0.051 SIDE CHAIN 1 C DC 409 0.067 SIDE CHAIN 1 C DC 413 0.069 SIDE CHAIN 1 D DT 421 0.080 SIDE CHAIN 1 D DG 428 0.068 SIDE CHAIN 1 D DT 430 0.078 SIDE CHAIN 1 -7.42 0.40 104.50 97.08 C C C O4' C4' C3' DG DG DG 402 402 402 N 1 7.71 0.70 110.30 118.01 C C C C1' O4' C4' DG DG DG 402 402 402 N 1 -5.90 0.80 105.90 100.00 C C C O4' C1' C2' DG DG DG 402 402 402 N 1 -2.71 0.40 106.40 103.69 C C C C8 N9 C4 DG DG DG 402 402 402 N 1 -5.96 0.70 119.90 113.94 C C C N3 C2 N2 DG DG DG 402 402 402 N 1 4.22 0.60 119.90 124.12 C C C N1 C6 O6 DG DG DG 402 402 402 N 1 -4.60 0.60 128.60 124.00 C C C C5 C6 O6 DG DG DG 402 402 402 N 1 7.43 1.20 119.70 127.13 C C C C3' O3' P DG DG DA 402 402 403 Y 1 -11.37 1.80 114.10 102.73 C C C C5' C4' C3' DA DA DA 403 403 403 N 1 -4.96 0.80 105.90 100.94 C C C O4' C1' C2' DA DA DA 403 403 403 N 1 -7.06 1.00 110.10 103.04 C C C C1' O4' C4' DT DT DT 404 404 404 N 1 -5.02 0.70 102.20 97.18 C C C C4' C3' C2' DT DT DT 404 404 404 N 1 -7.08 0.80 105.90 98.82 C C C O4' C1' C2' DT DT DT 404 404 404 N 1 2.35 0.30 108.30 110.65 C C C O4' C1' N1 DT DT DT 404 404 404 N 1 4.55 0.60 118.00 122.55 C C C C4 C5 C6 DT DT DT 404 404 404 N 1 -6.69 0.60 122.90 116.21 C C C C6 C5 C7 DT DT DT 404 404 404 N 1 -19.05 1.90 104.00 84.95 C C C O3' P O5' DT DA DA 404 405 405 Y 1 -13.61 0.80 105.90 92.29 C C C O4' C1' C2' DA DA DA 405 405 405 N 1 -16.12 1.90 104.00 87.88 C C C O3' P O5' DA DG DG 405 406 406 Y 1 10.90 1.10 110.50 121.40 C C C O3' P OP2 DA DG DG 405 406 406 Y 1 9.74 1.60 120.90 130.64 C C C P O5' C5' DG DG DG 406 406 406 N 1 -10.69 0.70 102.20 91.51 C C C C4' C3' C2' DG DG DG 406 406 406 N 1 -8.68 0.80 105.90 97.22 C C C O4' C1' C2' DG DG DG 406 406 406 N 1 2.76 0.30 108.30 111.06 C C C O4' C1' N9 DG DG DG 406 406 406 N 1 4.45 0.50 111.90 116.35 C C C C2 N3 C4 DG DG DG 406 406 406 N 1 -3.26 0.50 128.60 125.34 C C C N3 C4 C5 DG DG DG 406 406 406 N 1 3.61 0.50 111.50 115.11 C C C C5 C6 N1 DG DG DG 406 406 406 N 1 6.21 0.70 119.90 126.11 C C C N3 C2 N2 DG DG DG 406 406 406 N 1 7.37 1.20 119.70 127.07 C C C C3' O3' P DG DG DC 406 406 407 Y 1 -16.98 0.40 104.50 87.52 C C C O4' C4' C3' DC DC DC 407 407 407 N 1 -23.60 1.00 110.10 86.50 C C C C1' O4' C4' DC DC DC 407 407 407 N 1 -8.74 0.80 102.40 93.66 C C C C3' C2' C1' DC DC DC 407 407 407 N 1 -10.75 0.80 105.90 95.15 C C C O4' C1' C2' DC DC DC 407 407 407 N 1 4.32 0.50 119.90 124.22 C C C C2 N3 C4 DC DC DC 407 407 407 N 1 -4.39 0.40 121.90 117.51 C C C N3 C4 C5 DC DC DC 407 407 407 N 1 3.29 0.50 121.00 124.29 C C C C5 C6 N1 DC DC DC 407 407 407 N 1 9.06 0.70 118.00 127.06 C C C N3 C4 N4 DC DC DC 407 407 407 N 1 -4.81 0.70 120.20 115.39 C C C C5 C4 N4 DC DC DC 407 407 407 N 1 -8.34 1.20 119.70 111.36 C C C C3' O3' P DC DC DG 407 407 408 Y 1 3.30 0.50 111.90 115.20 C C C C2 N3 C4 DG DG DG 408 408 408 N 1 -5.76 0.90 105.70 99.94 C C C O5' P OP2 DC DC DC 409 409 409 N 1 -3.77 0.40 104.50 100.73 C C C O4' C4' C3' DC DC DC 409 409 409 N 1 -13.20 1.00 110.10 96.90 C C C C1' O4' C4' DC DC DC 409 409 409 N 1 -4.79 0.70 102.20 97.41 C C C C4' C3' C2' DC DC DC 409 409 409 N 1 4.23 0.30 108.30 112.53 C C C O4' C1' N1 DC DC DC 409 409 409 N 1 -2.89 0.40 121.90 119.01 C C C N3 C4 C5 DC DC DC 409 409 409 N 1 14.39 1.20 119.70 134.09 C C C C3' O3' P DC DC DT 409 409 410 Y 1 -11.99 1.80 114.10 102.11 C C C C5' C4' C3' DT DT DT 410 410 410 N 1 8.11 1.10 109.80 117.91 C C C C5' C4' O4' DT DT DT 410 410 410 N 1 -4.03 0.50 121.30 117.27 C C C C6 N1 C2 DT DT DT 410 410 410 N 1 4.24 0.60 114.60 118.84 C C C N1 C2 N3 DT DT DT 410 410 410 N 1 4.00 0.60 118.00 122.00 C C C C4 C5 C6 DT DT DT 410 410 410 N 1 4.20 0.70 124.90 129.10 C C C C5 C4 O4 DT DT DT 410 410 410 N 1 -7.36 0.60 119.00 111.64 C C C C4 C5 C7 DT DT DT 410 410 410 N 1 10.90 1.50 120.40 131.30 C C C C6 N1 C1' DT DT DT 410 410 410 N 1 4.46 0.70 110.30 114.76 C C C C1' O4' C4' DA DA DA 411 411 411 N 1 -7.20 0.80 105.90 98.70 C C C O4' C1' C2' DT DT DT 412 412 412 N 1 5.27 0.30 108.30 113.57 C C C O4' C1' N1 DT DT DT 412 412 412 N 1 4.19 0.60 118.00 122.19 C C C C4 C5 C6 DT DT DT 412 412 412 N 1 -4.88 0.60 122.30 117.42 C C C N3 C2 O2 DT DT DT 412 412 412 N 1 -7.92 1.00 110.10 102.18 C C C C1' O4' C4' DC DC DC 413 413 413 N 1 -7.86 0.80 102.40 94.54 C C C C3' C2' C1' DC DC DC 413 413 413 N 1 8.12 0.30 108.30 116.42 C C C O4' C1' N1 DC DC DC 413 413 413 N 1 -13.90 0.40 104.50 90.60 D D D O4' C4' C3' DT DT DT 421 421 421 N 1 9.59 0.90 103.10 112.69 D D D C4' C3' C2' DT DT DT 421 421 421 N 1 -6.49 0.80 102.40 95.91 D D D C3' C2' C1' DT DT DT 421 421 421 N 1 3.87 0.50 106.80 110.67 D D D O4' C1' C2' DT DT DT 421 421 421 N 1 -3.81 0.60 114.60 110.79 D D D N1 C2 N3 DT DT DT 421 421 421 N 1 8.59 0.80 123.10 131.69 D D D N1 C2 O2 DT DT DT 421 421 421 N 1 -4.96 0.60 122.30 117.34 D D D N3 C2 O2 DT DT DT 421 421 421 N 1 -4.69 0.60 122.90 118.21 D D D C6 C5 C7 DT DT DT 421 421 421 N 1 -10.57 1.50 120.40 109.83 D D D C6 N1 C1' DT DT DT 421 421 421 N 1 11.53 1.90 104.00 115.53 D D D O3' P O5' DT DG DG 421 422 422 Y 1 -2.93 0.40 104.50 101.57 D D D O4' C4' C3' DG DG DG 422 422 422 N 1 3.06 0.30 108.30 111.36 D D D O4' C1' N9 DG DG DG 422 422 422 N 1 -3.17 0.50 111.90 108.73 D D D C2 N3 C4 DG DG DG 422 422 422 N 1 -3.12 0.50 104.30 101.18 D D D C5 N7 C8 DG DG DG 422 422 422 N 1 3.43 0.50 113.10 116.53 D D D N7 C8 N9 DG DG DG 422 422 422 N 1 -2.44 0.40 106.40 103.96 D D D C8 N9 C4 DG DG DG 422 422 422 N 1 -4.25 0.60 130.40 126.15 D D D C6 C5 N7 DG DG DG 422 422 422 N 1 -4.48 0.70 102.20 97.72 D D D C4' C3' C2' DA DA DA 423 423 423 N 1 -6.35 0.80 105.90 99.55 D D D O4' C1' C2' DA DA DA 423 423 423 N 1 -12.77 1.90 104.00 91.23 D D D O3' P O5' DA DT DT 423 424 424 Y 1 -5.20 0.80 105.90 100.70 D D D O4' C1' C2' DT DT DT 424 424 424 N 1 4.48 0.60 118.00 122.48 D D D C4 C5 C6 DT DT DT 424 424 424 N 1 -3.95 0.60 122.30 118.35 D D D N3 C2 O2 DT DT DT 424 424 424 N 1 -4.44 0.60 119.00 114.56 D D D C4 C5 C7 DT DT DT 424 424 424 N 1 -10.74 1.60 120.90 110.16 D D D P O5' C5' DA DA DA 425 425 425 N 1 -6.24 0.80 105.90 99.66 D D D O4' C1' C2' DA DA DA 425 425 425 N 1 7.87 0.60 118.60 126.47 D D D N1 C6 N6 DA DA DA 425 425 425 N 1 -9.08 0.80 123.70 114.62 D D D C5 C6 N6 DA DA DA 425 425 425 N 1 -9.86 0.70 102.20 92.34 D D D C4' C3' C2' DG DG DG 426 426 426 N 1 6.01 0.30 108.30 114.31 D D D O4' C1' N9 DG DG DG 426 426 426 N 1 3.36 0.50 111.90 115.26 D D D C2 N3 C4 DG DG DG 426 426 426 N 1 -2.49 0.40 106.40 103.91 D D D C8 N9 C4 DG DG DG 426 426 426 N 1 4.64 0.70 119.90 124.54 D D D N3 C2 N2 DG DG DG 426 426 426 N 1 -3.17 0.40 104.50 101.33 D D D O4' C4' C3' DC DC DC 427 427 427 N 1 -13.50 0.70 102.20 88.70 D D D C4' C3' C2' DC DC DC 427 427 427 N 1 -5.39 0.80 105.90 100.51 D D D O4' C1' C2' DC DC DC 427 427 427 N 1 -7.42 0.70 108.00 100.58 D D D O4' C1' N1 DC DC DC 427 427 427 N 1 -2.49 0.40 121.90 119.41 D D D N3 C4 C5 DC DC DC 427 427 427 N 1 4.15 0.50 117.40 121.55 D D D C4 C5 C6 DC DC DC 427 427 427 N 1 -5.43 0.70 121.90 116.47 D D D N3 C2 O2 DC DC DC 427 427 427 N 1 15.69 1.20 119.70 135.39 D D D C3' O3' P DC DC DG 427 427 428 Y 1 5.58 0.50 106.80 112.38 D D D O4' C1' C2' DG DG DG 428 428 428 N 1 3.16 0.30 108.30 111.46 D D D O4' C1' N9 DG DG DG 428 428 428 N 1 -4.13 0.50 111.90 107.77 D D D C2 N3 C4 DG DG DG 428 428 428 N 1 8.26 0.60 118.90 127.16 D D D N1 C2 O2 DC DC DC 429 429 429 N 1 -7.91 0.70 121.90 113.99 D D D N3 C2 O2 DC DC DC 429 429 429 N 1 -4.79 0.40 104.50 99.71 D D D O4' C4' C3' DT DT DT 430 430 430 N 1 -10.84 0.80 102.40 91.56 D D D C3' C2' C1' DT DT DT 430 430 430 N 1 -3.86 0.60 123.70 119.84 D D D C5 C6 N1 DT DT DT 430 430 430 N 1 -15.88 1.90 104.00 88.12 D D D O3' P O5' DT DA DA 430 431 431 Y 1 -9.63 1.60 120.90 111.27 D D D P O5' C5' DA DA DA 431 431 431 N 1 -5.24 0.70 102.20 96.96 D D D C4' C3' C2' DA DA DA 431 431 431 N 1 -3.40 0.50 129.30 125.90 D D D N1 C2 N3 DA DA DA 431 431 431 N 1 -9.81 1.60 120.90 111.09 D D D P O5' C5' DT DT DT 432 432 432 N 1 -8.15 0.80 105.90 97.75 D D D O4' C1' C2' DT DT DT 432 432 432 N 1 6.27 0.30 108.30 114.57 D D D O4' C1' N1 DT DT DT 432 432 432 N 1 -3.67 0.50 121.30 117.63 D D D C6 N1 C2 DT DT DT 432 432 432 N 1 6.45 0.60 118.00 124.45 D D D C4 C5 C6 DT DT DT 432 432 432 N 1 3.68 0.60 119.90 123.58 D D D N3 C4 O4 DT DT DT 432 432 432 N 1 -6.18 0.60 122.90 116.72 D D D C6 C5 C7 DT DT DT 432 432 432 N 1 -9.96 0.40 104.50 94.54 D D D O4' C4' C3' DC DC DC 433 433 433 N 1 -10.03 1.00 110.10 100.07 D D D C1' O4' C4' DC DC DC 433 433 433 N 1 -7.17 0.80 105.90 98.73 D D D O4' C1' C2' DC DC DC 433 433 433 N 1 C C C5' C4' DG DG 402 402 0.057 0.007 1.512 1.569 N 1 C C C6 N1 DA DA 403 403 -0.056 0.007 1.351 1.295 N 1 C C C3' C2' DT DT 404 404 -0.053 0.008 1.516 1.463 N 1 C C C4' C3' DA DA 405 405 -0.071 0.010 1.521 1.450 N 1 C C N9 C4 DA DA 405 405 -0.062 0.006 1.374 1.312 N 1 C C C5' C4' DC DC 407 407 0.060 0.007 1.512 1.572 N 1 C C O4' C4' DC DC 407 407 -0.090 0.010 1.446 1.356 N 1 C C O3' C3' DC DC 407 407 -0.044 0.006 1.419 1.375 N 1 C C N1 C2 DC DC 407 407 -0.066 0.010 1.397 1.331 N 1 C C N9 C4 DG DG 408 408 0.102 0.008 1.375 1.477 N 1 C C C5' C4' DC DC 409 409 0.056 0.007 1.512 1.568 N 1 C C C5' C4' DT DT 410 410 0.044 0.007 1.512 1.556 N 1 C C C5 C6 DT DT 410 410 0.051 0.007 1.339 1.390 N 1 C C C5 C7 DT DT 410 410 0.058 0.006 1.496 1.554 N 1 C C O3' P DT DC 412 413 0.074 0.012 1.607 1.681 Y 1 C C C4' C3' DC DC 413 413 0.094 0.010 1.529 1.623 N 1 D D C5' C4' DT DT 421 421 0.119 0.007 1.512 1.631 N 1 D D C2' C1' DT DT 421 421 -0.101 0.010 1.518 1.417 N 1 D D O4' C1' DT DT 421 421 0.088 0.011 1.420 1.508 N 1 D D N1 C2 DT DT 421 421 0.062 0.008 1.376 1.438 N 1 D D C5 C6 DT DT 421 421 -0.057 0.007 1.339 1.282 N 1 D D C5' C4' DG DG 422 422 0.044 0.007 1.512 1.556 N 1 D D C3' C2' DA DA 423 423 0.079 0.012 1.518 1.597 N 1 D D C8 N9 DA DA 423 423 0.052 0.008 1.373 1.425 N 1 D D N9 C4 DA DA 423 423 0.043 0.006 1.374 1.417 N 1 D D O3' P DT DA 424 425 -0.075 0.012 1.607 1.532 Y 1 D D O4' C4' DA DA 425 425 -0.066 0.010 1.446 1.380 N 1 D D N7 C8 DA DA 425 425 -0.047 0.007 1.311 1.264 N 1 D D C4' C3' DG DG 426 426 0.067 0.010 1.529 1.596 N 1 D D C5' C4' DC DC 427 427 0.130 0.007 1.512 1.642 N 1 D D N1 C6 DC DC 427 427 -0.068 0.006 1.367 1.299 N 1 D D P O5' DG DG 428 428 -0.105 0.010 1.593 1.488 N 1 D D O3' C3' DG DG 428 428 -0.081 0.006 1.419 1.338 N 1 D D C5 C6 DG DG 428 428 -0.072 0.010 1.419 1.347 N 1 D D C6 N1 DG DG 428 428 -0.060 0.007 1.391 1.331 N 1 D D C5 N7 DG DG 428 428 -0.038 0.006 1.388 1.350 N 1 D D C8 N9 DG DG 428 428 -0.063 0.007 1.374 1.311 N 1 D D P O5' DC DC 429 429 0.112 0.010 1.593 1.705 N 1 D D C4' C3' DC DC 429 429 0.082 0.010 1.529 1.611 N 1 D D C2' C1' DT DT 430 430 -0.060 0.010 1.518 1.458 N 1 D D C2 N3 DT DT 432 432 0.052 0.008 1.373 1.425 N 1 D D O3' P DT DC 432 433 -0.083 0.012 1.607 1.524 Y 1 D D C2 N3 DC DC 433 433 0.059 0.008 1.353 1.412 N 1 A LYS 7 -66.85 79.57 1 A ASP 16 -103.98 78.90 1 A ASP 60 -29.64 108.09 1 A PHE 84 -140.61 -9.53 1 A GLN 90 -57.24 38.63 1 A LYS 91 -53.80 -8.40 1 A LYS 112 35.90 61.78 1 A ASP 144 77.61 50.53 1 A ALA 154 -19.55 -43.59 1 A ASP 174 -59.31 -89.76 1 A LEU 175 -41.60 106.64 1 A ASN 176 -69.44 70.19 1 A GLU 203 -10.44 -54.49 1 A PHE 259 -108.68 47.90 1 A LYS 261 67.23 -26.67 1 A SER 305 -80.94 -155.57 0.1890000 0.1890000 2.700 20.000 15588 88.700 1 2.000 2.700 20.000 70 3211 26 509 2606 4.20 30.1 0.2490000 2.82 1665 77.60 3MHT 0.0710000 1 4.200 88.700 refinement X-PLOR 3.1 data reduction DENZO TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCY 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N A GLY 23 C GLY 23 HELX_P A CYS 31 C CYS 31 1 1 9 A LYS 43 C LYS 43 HELX_P A PHE 53 C PHE 53 1 2 11 A ILE 61 C ILE 61 HELX_P A GLN 63 C GLN 63 5 3 3 A GLU 66 C GLU 66 HELX_P A THR 68 C THR 68 5 4 3 A GLY 92 C GLY 92 HELX_P A GLU 94 C GLU 94 5 5 3 A PHE 101 C PHE 101 HELX_P A LYS 111 C LYS 111 1 6 11 A LYS 122 C LYS 122 HELX_P A LEU 143 C LEU 143 1 7 22 A ALA 154 C ALA 154 HELX_P A ASP 156 C ASP 156 5 8 3 A VAL 192 C VAL 192 HELX_P A ASP 194 C ASP 194 5 9 3 A ASP 199 C ASP 199 HELX_P A LEU 205 C LEU 205 1 10 7 A PRO 276 C PRO 276 HELX_P A MET 283 C MET 283 1 11 8 A THR 295 C THR 295 HELX_P A ASN 304 C ASN 304 1 12 10 A ILE 308 C ILE 308 HELX_P A ASN 323 C ASN 323 1 13 16 hydrog DG-DC PAIR C DG 402 A N1 DG 1 1_555 D DC 433 B N3 DC 13 1_555 hydrog WATSON-CRICK C DA 403 A N1 DA 2 1_555 D DT 432 B N3 DT 12 1_555 hydrog WATSON-CRICK C DA 403 A N6 DA 2 1_555 D DT 432 B O4 DT 12 1_555 hydrog WATSON-CRICK C DT 404 A N3 DT 3 1_555 D DA 431 B N1 DA 11 1_555 hydrog WATSON-CRICK C DT 404 A O4 DT 3 1_555 D DA 431 B N6 DA 11 1_555 hydrog WATSON-CRICK C DA 405 A N1 DA 4 1_555 D DT 430 B N3 DT 10 1_555 hydrog WATSON-CRICK C DA 405 A N6 DA 4 1_555 D DT 430 B O4 DT 10 1_555 hydrog WATSON-CRICK C DG 406 A N1 DG 5 1_555 D DC 429 B N3 DC 9 1_555 hydrog WATSON-CRICK C DG 406 A N2 DG 5 1_555 D DC 429 B O2 DC 9 1_555 hydrog WATSON-CRICK C DG 406 A O6 DG 5 1_555 D DC 429 B N4 DC 9 1_555 hydrog WATSON-CRICK C DC 407 A N3 DC 6 1_555 D DG 428 B N1 DG 8 1_555 hydrog WATSON-CRICK C DC 407 A N4 DC 6 1_555 D DG 428 B O6 DG 8 1_555 hydrog WATSON-CRICK C DC 407 A O2 DC 6 1_555 D DG 428 B N2 DG 8 1_555 hydrog WATSON-CRICK C DC 409 A N3 DC 8 1_555 D DG 426 B N1 DG 6 1_555 hydrog WATSON-CRICK C DC 409 A N4 DC 8 1_555 D DG 426 B O6 DG 6 1_555 hydrog WATSON-CRICK C DC 409 A O2 DC 8 1_555 D DG 426 B N2 DG 6 1_555 hydrog WATSON-CRICK C DT 410 A N3 DT 9 1_555 D DA 425 B N1 DA 5 1_555 hydrog WATSON-CRICK C DT 410 A O4 DT 9 1_555 D DA 425 B N6 DA 5 1_555 hydrog WATSON-CRICK C DA 411 A N1 DA 10 1_555 D DT 424 B N3 DT 4 1_555 hydrog WATSON-CRICK C DA 411 A N6 DA 10 1_555 D DT 424 B O4 DT 4 1_555 hydrog WATSON-CRICK C DT 412 A N3 DT 11 1_555 D DA 423 B N1 DA 3 1_555 hydrog WATSON-CRICK C DT 412 A O4 DT 11 1_555 D DA 423 B N6 DA 3 1_555 hydrog WATSON-CRICK C DC 413 A N3 DC 12 1_555 D DG 422 B N1 DG 2 1_555 hydrog WATSON-CRICK C DC 413 A N4 DC 12 1_555 D DG 422 B O6 DG 2 1_555 hydrog WATSON-CRICK C DC 413 A O2 DC 12 1_555 D DG 422 B N2 DG 2 1_555 TRANSFERASE/DNA COMPLEX (METHYLTRANSFERASE-DNA), TRANSFERASE, METHYLTRANSFERASE, RESTRICTION SYSTEM, TRANSFERASE-DNA complex MTH1_HAEHA UNP 3 1 P05102 3MHT PDB 1 3MHT 3MHT PDB 2 3MHT 1 327 3MHT 1 327 P05102 A 1 1 327 402 413 3MHT 402 413 3MHT C 2 1 12 421 433 3MHT 421 433 3MHT D 3 1 13 6 5 anti-parallel anti-parallel parallel parallel parallel anti-parallel anti-parallel parallel anti-parallel A TYR 145 C TYR 145 A ASN 153 C ASN 153 A GLU 164 C GLU 164 A ARG 172 C ARG 172 A VAL 115 C VAL 115 A VAL 121 C VAL 121 A ILE 74 C ILE 74 A ALA 77 C ALA 77 A ARG 13 C ARG 13 A LEU 17 C LEU 17 A GLU 34 C GLU 34 A ASN 39 C ASN 39 A LEU 212 C LEU 212 A MET 214 C MET 214 A ARG 228 C ARG 228 A VAL 232 C VAL 232 A ARG 240 C ARG 240 A SER 243 C SER 243 A GLY 264 C GLY 264 A VAL 267 C VAL 267 A LYS 270 C LYS 270 A LYS 273 C LYS 273 BINDING SITE FOR RESIDUE SAH A 328 A SAH 328 Software 17 A PHE 18 C PHE 18 17 1_555 A ALA 19 C ALA 19 17 1_555 A LEU 21 C LEU 21 17 1_555 A GLY 23 C GLY 23 17 1_555 A ASN 39 C ASN 39 17 1_555 A GLU 40 C GLU 40 17 1_555 A TRP 41 C TRP 41 17 1_555 A ASP 60 C ASP 60 17 1_555 A ILE 61 C ILE 61 17 1_555 A GLY 78 C GLY 78 17 1_555 A PRO 80 C PRO 80 17 1_555 A TYR 285 C TYR 285 17 1_555 A ASN 304 C ASN 304 17 1_555 A SER 305 C SER 305 17 1_555 A HOH 332 G HOH 17 1_555 A HOH 333 G HOH 17 1_555 A HOH 374 G HOH 17 1_555 155 H 3 2