0.004989
0.000000
0.000000
0.000000
0.004989
0.000000
0.000000
0.000000
0.004989
0.00000
0.00000
0.00000
Schumacher, M.A.
Piro, K.
Xu, W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
90.00
200.460
200.460
200.460
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
S
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
N
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
S
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
S
N
445
N
O
N
446
N
O
N
447
N
O
N
448
N
O
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
R
C
N
454
N
O
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
N
N
467
S
C
N
468
N
C
N
469
N
O
N
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
N
477
N
O
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
N
N
491
S
C
N
492
N
C
N
493
N
O
N
494
N
C
N
495
N
C
N
496
N
C
N
497
N
O
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
doub
N
438
N
doub
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
Y
468
N
doub
Y
469
N
sing
Y
470
N
sing
N
471
N
sing
Y
472
N
doub
N
473
N
sing
Y
474
N
doub
N
475
N
sing
Y
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
doub
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
38
4514
4526
10.1093/nar/gkq161
20236989
Insight into F plasmid DNA segregation revealed by structures of SopB and SopB-DNA complexes.
2010
10.2210/pdb3mkw/pdb
pdb_00003mkw
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
mirrors
CCD
2008-10-12
ADSC QUANTUM 4r
graphite
SINGLE WAVELENGTH
M
x-ray
1
1.03
1.0
8.3.1
ALS
1.03
SYNCHROTRON
ALS BEAMLINE 8.3.1
18-mer sopC repeat
5517.566
DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')
18 mer sopC repeat
2
syn
polymer
15157.027
Protein sopB
SopB(UNP residues 155-272)
2
man
polymer
96.063
SULFATE ION
9
syn
non-polymer
Plasmid partition protein B
no
no
(DC)(DT)(DG)(DG)(DG)(DA)(DC)(DC)(DA)(DT)(DG)(DG)(DT)(DC)(DC)(DC)(DA)(DG)
CTGGGACCATGGTCCCAG
U,T
polydeoxyribonucleotide
no
no
MGSSHHHHHHSSGLVPRGSHYRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPG
ELSARSGDALQKAFTDKEELLKQQASNLHEQKKAGVIFEADEVITLLTSVLKTSSASR
MGSSHHHHHHSSGLVPRGSHYRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPG
ELSARSGDALQKAFTDKEELLKQQASNLHEQKKAGVIFEADEVITLLTSVLKTSSASR
B,P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
artificial gene, codon optimized for e. coli expression
K-12
sample
B, ECOK12F047, F plasmid, sopB
83333
Escherichia coli
562
Escherichia coli
BL21(DE3)
vector
pET15b
1
8.12
84.85
VAPOR DIFFUSION, HANGING DROP
8.0
25.5% PEG 4000, 0.17 M lithium sulphate, 0.1 M Tris pH 8.0, 15% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
0.020
1
19
U
1
T
18
-2.040
U_DC1:DG18_T
1
-10.840
-0.368
-0.229
-0.392
-8.212
1
20
U
2
T
17
-1.167
U_DT2:DA17_T
2
-2.464
0.373
-0.130
-0.606
3.551
1
19
U
3
T
16
-4.807
U_DG3:DC16_T
3
-3.517
-0.007
0.290
-0.285
-2.554
1
19
U
4
T
15
-2.717
U_DG4:DC15_T
4
-3.269
-0.218
0.043
-0.255
1.494
1
19
U
5
T
14
0.493
U_DG5:DC14_T
5
-4.995
-0.399
-0.005
-0.468
1.574
1
20
U
6
T
13
-6.162
U_DA6:DT13_T
6
-4.055
0.285
-0.184
-0.281
7.207
1
19
U
7
T
12
4.520
U_DC7:DG12_T
7
-6.765
0.144
-0.226
-0.380
-7.004
1
19
U
8
T
11
-3.805
U_DC8:DG11_T
8
2.088
0.295
0.000
-0.523
2.016
1
20
U
9
T
10
-6.292
U_DA9:DT10_T
9
-8.028
0.649
-0.326
-0.316
-3.459
1
20
U
10
T
9
-1.405
U_DT10:DA9_T
10
-5.620
-0.372
-0.234
-0.237
8.928
1
19
U
11
T
8
-3.229
U_DG11:DC8_T
11
0.180
-0.326
0.125
-0.437
-8.814
1
19
U
12
T
7
-1.728
U_DG12:DC7_T
12
-6.390
0.260
-0.368
-0.364
-2.124
1
20
U
13
T
6
-8.404
U_DT13:DA6_T
13
-4.769
-0.573
-0.185
-0.336
1.875
1
19
U
14
T
5
1.048
U_DC14:DG5_T
14
-4.987
0.291
-0.001
-0.309
0.623
1
19
U
15
T
4
0.410
U_DC15:DG4_T
15
-1.575
0.259
0.190
-0.308
-2.063
1
19
U
16
T
3
-2.197
U_DC16:DG3_T
16
-4.678
-0.096
0.304
-0.245
8.386
1
20
U
17
T
2
2.087
U_DA17:DT2_T
17
-3.389
-0.077
0.047
-0.507
-1.182
1
19
U
18
T
1
-3.643
U_DG18:DC1_T
18
-10.567
0.010
-0.140
-0.350
3.472
40.128
U
U
1
2
10.684
T
T
18
17
3.578
7.288
0.471
-0.419
UU_DC1DT2:DA17DG18_TT
1
2.635
-3.862
39.403
-1.515
-0.360
3.129
31.399
U
U
2
3
3.642
T
T
17
16
3.130
1.970
-0.190
0.025
UU_DT2DG3:DC16DA17_TT
2
-0.605
1.118
31.333
-0.308
0.243
3.541
36.361
U
U
3
4
1.663
T
T
16
15
3.492
1.034
0.649
-0.253
UU_DG3DG4:DC15DC16_TT
3
5.555
-8.936
35.934
-0.561
-0.203
3.275
29.828
U
U
4
5
5.904
T
T
15
14
3.289
3.032
-0.486
-0.228
UU_DG4DG5:DC14DC15_TT
4
-1.914
3.728
29.617
-1.078
0.543
3.218
40.182
U
U
5
6
4.750
T
T
14
13
3.256
3.260
-0.265
-0.259
UU_DG5DA6:DT13DC14_TT
5
1.019
-1.484
40.042
-0.744
0.501
2.915
29.788
U
U
6
7
7.535
T
T
13
12
3.156
3.860
0.906
-1.099
UU_DA6DC7:DG12DT13_TT
6
-2.277
4.446
29.457
-2.890
-2.206
3.372
30.102
U
U
7
8
11.241
T
T
12
11
3.584
5.796
-0.931
-1.129
UU_DC7DC8:DG11DG12_TT
7
-2.540
4.926
29.444
-3.448
1.234
3.204
38.456
U
U
8
9
8.032
T
T
11
10
3.223
5.259
-0.419
0.718
UU_DC8DA9:DT10DG11_TT
8
5.346
-8.165
37.745
0.442
1.296
3.431
28.396
U
U
9
10
-9.621
T
T
10
9
3.349
-4.698
0.265
-0.811
UU_DA9DT10:DA9DT10_TT
9
-0.544
1.114
28.008
-0.526
-0.672
3.184
38.608
U
U
10
11
9.135
T
T
9
8
3.118
6.005
0.138
0.906
UU_DT10DG11:DC8DA9_TT
10
-4.438
6.752
37.907
0.651
-0.742
3.475
31.070
U
U
11
12
11.674
T
T
8
7
3.736
6.203
0.640
-1.200
UU_DG11DG12:DC7DC8_TT
11
3.204
-6.031
30.294
-3.568
-0.508
2.930
27.078
U
U
12
13
6.728
T
T
7
6
3.103
3.143
-0.902
-1.111
UU_DG12DT13:DA6DC7_TT
12
0.751
-1.608
26.888
-3.109
2.103
3.153
38.980
U
U
13
14
4.724
T
T
6
5
3.204
3.149
0.401
-0.468
UU_DT13DC14:DG5DA6_TT
13
-0.505
0.758
38.855
-1.073
-0.660
3.328
32.742
U
U
14
15
7.908
T
T
5
4
3.371
4.445
0.742
-0.077
UU_DC14DC15:DG4DG5_TT
14
-0.139
0.247
32.446
-0.924
-1.341
3.484
35.297
U
U
15
16
-3.307
T
T
4
3
3.409
-2.000
-0.846
-0.082
UU_DC15DC16:DG3DG4_TT
15
-4.232
6.999
34.995
0.179
0.733
3.180
33.619
U
U
16
17
3.504
T
T
3
2
3.191
2.025
0.357
0.042
UU_DC16DA17:DT2DG3_TT
16
-0.712
1.232
33.553
-0.250
-0.731
3.414
37.703
U
U
17
18
10.641
T
T
2
1
3.508
6.836
-0.712
-0.456
UU_DA17DG18:DC1DT2_TT
17
-2.658
4.137
37.008
-1.651
0.734
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-05-05
1
1
2011-07-13
1
2
2024-02-21
1
3
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
SopB(155-323)-18mer, I23 crystal form
SopB(155-272)-18mer complex, P21 form
RCSB
Y
RCSB
2010-04-15
REL
REL
SO4
SULFATE ION
The DNA was chemically synthesized.
sample
the FL SopB-18mer I23
Other
experimental model
SO4
936
3
SO4
SO4
936
B
SO4
836
3
SO4
SO4
836
B
SO4
835
3
SO4
SO4
835
B
SO4
135
3
SO4
SO4
273
P
SO4
235
3
SO4
SO4
274
P
SO4
335
3
SO4
SO4
335
P
SO4
435
3
SO4
SO4
435
P
SO4
865
3
SO4
SO4
865
P
SO4
965
3
SO4
SO4
965
P
DC
1
n
1
DC
1
U
DT
2
n
2
DT
2
U
DG
3
n
3
DG
3
U
DG
4
n
4
DG
4
U
DG
5
n
5
DG
5
U
DA
6
n
6
DA
6
U
DC
7
n
7
DC
7
U
DC
8
n
8
DC
8
U
DA
9
n
9
DA
9
U
DT
10
n
10
DT
10
U
DG
11
n
11
DG
11
U
DG
12
n
12
DG
12
U
DT
13
n
13
DT
13
U
DC
14
n
14
DC
14
U
DC
15
n
15
DC
15
U
DC
16
n
16
DC
16
U
DA
17
n
17
DA
17
U
DG
18
n
18
DG
18
U
DC
1
n
1
DC
1
T
DT
2
n
2
DT
2
T
DG
3
n
3
DG
3
T
DG
4
n
4
DG
4
T
DG
5
n
5
DG
5
T
DA
6
n
6
DA
6
T
DC
7
n
7
DC
7
T
DC
8
n
8
DC
8
T
DA
9
n
9
DA
9
T
DT
10
n
10
DT
10
T
DG
11
n
11
DG
11
T
DG
12
n
12
DG
12
T
DT
13
n
13
DT
13
T
DC
14
n
14
DC
14
T
DC
15
n
15
DC
15
T
DC
16
n
16
DC
16
T
DA
17
n
17
DA
17
T
DG
18
n
18
DG
18
T
n
1
135
B
n
2
136
B
n
3
137
B
n
4
138
B
n
5
139
B
n
6
140
B
n
7
141
B
n
8
142
B
n
9
143
B
n
10
144
B
n
11
145
B
n
12
146
B
n
13
147
B
n
14
148
B
n
15
149
B
n
16
150
B
n
17
151
B
n
18
152
B
n
19
153
B
n
20
154
B
n
21
155
B
n
22
156
B
PRO
157
n
23
PRO
157
B
THR
158
n
24
THR
158
B
SER
159
n
25
SER
159
B
ALA
160
n
26
ALA
160
B
TYR
161
n
27
TYR
161
B
GLU
162
n
28
GLU
162
B
ARG
163
n
29
ARG
163
B
GLY
164
n
30
GLY
164
B
GLN
165
n
31
GLN
165
B
ARG
166
n
32
ARG
166
B
TYR
167
n
33
TYR
167
B
ALA
168
n
34
ALA
168
B
SER
169
n
35
SER
169
B
ARG
170
n
36
ARG
170
B
LEU
171
n
37
LEU
171
B
GLN
172
n
38
GLN
172
B
ASN
173
n
39
ASN
173
B
GLU
174
n
40
GLU
174
B
PHE
175
n
41
PHE
175
B
ALA
176
n
42
ALA
176
B
GLY
177
n
43
GLY
177
B
ASN
178
n
44
ASN
178
B
ILE
179
n
45
ILE
179
B
SER
180
n
46
SER
180
B
ALA
181
n
47
ALA
181
B
LEU
182
n
48
LEU
182
B
ALA
183
n
49
ALA
183
B
ASP
184
n
50
ASP
184
B
ALA
185
n
51
ALA
185
B
GLU
186
n
52
GLU
186
B
ASN
187
n
53
ASN
187
B
ILE
188
n
54
ILE
188
B
SER
189
n
55
SER
189
B
ARG
190
n
56
ARG
190
B
LYS
191
n
57
LYS
191
B
ILE
192
n
58
ILE
192
B
ILE
193
n
59
ILE
193
B
THR
194
n
60
THR
194
B
ARG
195
n
61
ARG
195
B
CYS
196
n
62
CYS
196
B
ILE
197
n
63
ILE
197
B
ASN
198
n
64
ASN
198
B
THR
199
n
65
THR
199
B
ALA
200
n
66
ALA
200
B
LYS
201
n
67
LYS
201
B
LEU
202
n
68
LEU
202
B
PRO
203
n
69
PRO
203
B
LYS
204
n
70
LYS
204
B
SER
205
n
71
SER
205
B
VAL
206
n
72
VAL
206
B
VAL
207
n
73
VAL
207
B
ALA
208
n
74
ALA
208
B
LEU
209
n
75
LEU
209
B
PHE
210
n
76
PHE
210
B
SER
211
n
77
SER
211
B
HIS
212
n
78
HIS
212
B
PRO
213
n
79
PRO
213
B
GLY
214
n
80
GLY
214
B
GLU
215
n
81
GLU
215
B
LEU
216
n
82
LEU
216
B
SER
217
n
83
SER
217
B
ALA
218
n
84
ALA
218
B
ARG
219
n
85
ARG
219
B
SER
220
n
86
SER
220
B
GLY
221
n
87
GLY
221
B
ASP
222
n
88
ASP
222
B
ALA
223
n
89
ALA
223
B
LEU
224
n
90
LEU
224
B
GLN
225
n
91
GLN
225
B
LYS
226
n
92
LYS
226
B
ALA
227
n
93
ALA
227
B
PHE
228
n
94
PHE
228
B
THR
229
n
95
THR
229
B
ASP
230
n
96
ASP
230
B
LYS
231
n
97
LYS
231
B
GLU
232
n
98
GLU
232
B
GLU
233
n
99
GLU
233
B
LEU
234
n
100
LEU
234
B
LEU
235
n
101
LEU
235
B
LYS
236
n
102
LYS
236
B
GLN
237
n
103
GLN
237
B
GLN
238
n
104
GLN
238
B
ALA
239
n
105
ALA
239
B
SER
240
n
106
SER
240
B
ASN
241
n
107
ASN
241
B
LEU
242
n
108
LEU
242
B
HIS
243
n
109
HIS
243
B
GLU
244
n
110
GLU
244
B
GLN
245
n
111
GLN
245
B
LYS
246
n
112
LYS
246
B
LYS
247
n
113
LYS
247
B
ALA
248
n
114
ALA
248
B
GLY
249
n
115
GLY
249
B
VAL
250
n
116
VAL
250
B
ILE
251
n
117
ILE
251
B
PHE
252
n
118
PHE
252
B
GLU
253
n
119
GLU
253
B
ALA
254
n
120
ALA
254
B
ASP
255
n
121
ASP
255
B
GLU
256
n
122
GLU
256
B
VAL
257
n
123
VAL
257
B
ILE
258
n
124
ILE
258
B
THR
259
n
125
THR
259
B
LEU
260
n
126
LEU
260
B
LEU
261
n
127
LEU
261
B
THR
262
n
128
THR
262
B
SER
263
n
129
SER
263
B
VAL
264
n
130
VAL
264
B
LEU
265
n
131
LEU
265
B
LYS
266
n
132
LYS
266
B
THR
267
n
133
THR
267
B
SER
268
n
134
SER
268
B
SER
269
n
135
SER
269
B
ALA
270
n
136
ALA
270
B
ALA
271
n
137
SER
271
B
n
138
272
B
n
1
135
P
n
2
136
P
n
3
137
P
n
4
138
P
n
5
139
P
n
6
140
P
n
7
141
P
n
8
142
P
n
9
143
P
n
10
144
P
n
11
145
P
n
12
146
P
n
13
147
P
n
14
148
P
n
15
149
P
n
16
150
P
n
17
151
P
n
18
152
P
n
19
153
P
n
20
154
P
n
21
155
P
n
22
156
P
PRO
157
n
23
PRO
157
P
THR
158
n
24
THR
158
P
SER
159
n
25
SER
159
P
ALA
160
n
26
ALA
160
P
TYR
161
n
27
TYR
161
P
GLU
162
n
28
GLU
162
P
ARG
163
n
29
ARG
163
P
GLY
164
n
30
GLY
164
P
GLN
165
n
31
GLN
165
P
ARG
166
n
32
ARG
166
P
TYR
167
n
33
TYR
167
P
ALA
168
n
34
ALA
168
P
SER
169
n
35
SER
169
P
ARG
170
n
36
ARG
170
P
LEU
171
n
37
LEU
171
P
GLN
172
n
38
GLN
172
P
ASN
173
n
39
ASN
173
P
GLU
174
n
40
GLU
174
P
PHE
175
n
41
PHE
175
P
ALA
176
n
42
ALA
176
P
GLY
177
n
43
GLY
177
P
ASN
178
n
44
ASN
178
P
ILE
179
n
45
ILE
179
P
SER
180
n
46
SER
180
P
ALA
181
n
47
ALA
181
P
LEU
182
n
48
LEU
182
P
ALA
183
n
49
ALA
183
P
ASP
184
n
50
ASP
184
P
ALA
185
n
51
ALA
185
P
GLU
186
n
52
GLU
186
P
ASN
187
n
53
ASN
187
P
ILE
188
n
54
ILE
188
P
SER
189
n
55
SER
189
P
ARG
190
n
56
ARG
190
P
LYS
191
n
57
LYS
191
P
ILE
192
n
58
ILE
192
P
ILE
193
n
59
ILE
193
P
THR
194
n
60
THR
194
P
ARG
195
n
61
ARG
195
P
CYS
196
n
62
CYS
196
P
ILE
197
n
63
ILE
197
P
ASN
198
n
64
ASN
198
P
THR
199
n
65
THR
199
P
ALA
200
n
66
ALA
200
P
LYS
201
n
67
LYS
201
P
LEU
202
n
68
LEU
202
P
PRO
203
n
69
PRO
203
P
LYS
204
n
70
LYS
204
P
SER
205
n
71
SER
205
P
VAL
206
n
72
VAL
206
P
VAL
207
n
73
VAL
207
P
ALA
208
n
74
ALA
208
P
LEU
209
n
75
LEU
209
P
PHE
210
n
76
PHE
210
P
SER
211
n
77
SER
211
P
HIS
212
n
78
HIS
212
P
PRO
213
n
79
PRO
213
P
GLY
214
n
80
GLY
214
P
GLU
215
n
81
GLU
215
P
LEU
216
n
82
LEU
216
P
SER
217
n
83
SER
217
P
ALA
218
n
84
ALA
218
P
ARG
219
n
85
ARG
219
P
SER
220
n
86
SER
220
P
GLY
221
n
87
GLY
221
P
ASP
222
n
88
ASP
222
P
ALA
223
n
89
ALA
223
P
LEU
224
n
90
LEU
224
P
GLN
225
n
91
GLN
225
P
LYS
226
n
92
LYS
226
P
ALA
227
n
93
ALA
227
P
PHE
228
n
94
PHE
228
P
THR
229
n
95
THR
229
P
ASP
230
n
96
ASP
230
P
LYS
231
n
97
LYS
231
P
GLU
232
n
98
GLU
232
P
GLU
233
n
99
GLU
233
P
LEU
234
n
100
LEU
234
P
LEU
235
n
101
LEU
235
P
LYS
236
n
102
LYS
236
P
GLN
237
n
103
GLN
237
P
GLN
238
n
104
GLN
238
P
ALA
239
n
105
ALA
239
P
SER
240
n
106
SER
240
P
ASN
241
n
107
ASN
241
P
LEU
242
n
108
LEU
242
P
HIS
243
n
109
HIS
243
P
GLU
244
n
110
GLU
244
P
GLN
245
n
111
GLN
245
P
LYS
246
n
112
LYS
246
P
LYS
247
n
113
LYS
247
P
ALA
248
n
114
ALA
248
P
GLY
249
n
115
GLY
249
P
VAL
250
n
116
VAL
250
P
ILE
251
n
117
ILE
251
P
PHE
252
n
118
PHE
252
P
GLU
253
n
119
GLU
253
P
ALA
254
n
120
ALA
254
P
ASP
255
n
121
ASP
255
P
GLU
256
n
122
GLU
256
P
VAL
257
n
123
VAL
257
P
ILE
258
n
124
ILE
258
P
THR
259
n
125
THR
259
P
LEU
260
n
126
LEU
260
P
LEU
261
n
127
LEU
261
P
THR
262
n
128
THR
262
P
SER
263
n
129
SER
263
P
VAL
264
n
130
VAL
264
P
LEU
265
n
131
LEU
265
P
LYS
266
n
132
LYS
266
P
THR
267
n
133
THR
267
P
SER
268
n
134
SER
268
P
SER
269
n
135
SER
269
P
ALA
270
n
136
ALA
270
P
ALA
271
n
137
SER
271
P
n
138
272
P
author_defined_assembly
4
tetrameric
software_defined_assembly
PISA
4
tetrameric
6810
-169
16940
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
19_655
-z+3/2,-x+1/2,y+1/2
crystal symmetry operation
300.6900000000
100.2300000000
100.2300000000
1
U
O5'
DC
1
A
O5'
DC
1
1
Y
1
B
OG
SER
271
C
OG
SER
137
1
Y
1
P
OG
SER
271
D
OG
SER
137
1
Y
1
B
MET
135
C
MET
1
1
Y
1
B
GLY
136
C
GLY
2
1
Y
1
B
SER
137
C
SER
3
1
Y
1
B
SER
138
C
SER
4
1
Y
1
B
HIS
139
C
HIS
5
1
Y
1
B
HIS
140
C
HIS
6
1
Y
1
B
HIS
141
C
HIS
7
1
Y
1
B
HIS
142
C
HIS
8
1
Y
1
B
HIS
143
C
HIS
9
1
Y
1
B
HIS
144
C
HIS
10
1
Y
1
B
SER
145
C
SER
11
1
Y
1
B
SER
146
C
SER
12
1
Y
1
B
GLY
147
C
GLY
13
1
Y
1
B
LEU
148
C
LEU
14
1
Y
1
B
VAL
149
C
VAL
15
1
Y
1
B
PRO
150
C
PRO
16
1
Y
1
B
ARG
151
C
ARG
17
1
Y
1
B
GLY
152
C
GLY
18
1
Y
1
B
SER
153
C
SER
19
1
Y
1
B
HIS
154
C
HIS
20
1
Y
1
B
TYR
155
C
TYR
21
1
Y
1
B
ARG
156
C
ARG
22
1
Y
1
B
ARG
272
C
ARG
138
1
Y
1
P
MET
135
D
MET
1
1
Y
1
P
GLY
136
D
GLY
2
1
Y
1
P
SER
137
D
SER
3
1
Y
1
P
SER
138
D
SER
4
1
Y
1
P
HIS
139
D
HIS
5
1
Y
1
P
HIS
140
D
HIS
6
1
Y
1
P
HIS
141
D
HIS
7
1
Y
1
P
HIS
142
D
HIS
8
1
Y
1
P
HIS
143
D
HIS
9
1
Y
1
P
HIS
144
D
HIS
10
1
Y
1
P
SER
145
D
SER
11
1
Y
1
P
SER
146
D
SER
12
1
Y
1
P
GLY
147
D
GLY
13
1
Y
1
P
LEU
148
D
LEU
14
1
Y
1
P
VAL
149
D
VAL
15
1
Y
1
P
PRO
150
D
PRO
16
1
Y
1
P
ARG
151
D
ARG
17
1
Y
1
P
GLY
152
D
GLY
18
1
Y
1
P
SER
153
D
SER
19
1
Y
1
P
HIS
154
D
HIS
20
1
Y
1
P
TYR
155
D
TYR
21
1
Y
1
P
ARG
156
D
ARG
22
1
Y
1
P
ARG
272
D
ARG
138
1
Y
1
U
DT
2
0.068
SIDE CHAIN
1
U
DG
12
0.069
SIDE CHAIN
1
T
DT
2
0.067
SIDE CHAIN
1
T
DG
12
0.078
SIDE CHAIN
1
T
DG
18
0.057
SIDE CHAIN
1
B
ASN
173
-114.63
-79.77
1
B
GLU
174
-38.54
-18.93
1
B
PHE
175
-142.92
23.80
1
B
LYS
231
-150.28
36.93
1
B
ALA
254
-39.08
-70.34
1
B
SER
268
-54.52
-7.48
1
P
ASN
173
-111.59
-91.12
1
P
GLU
174
-37.56
-22.34
1
P
ALA
176
27.43
84.47
1
P
SER
189
-37.45
145.11
1
P
LYS
231
-157.60
34.35
1
P
ALA
254
25.75
-94.23
protein_rep.param
protein.top
water_rep.param
water.top
ion.param
ion.top
dna-rna_rep.param
dna-rna.top
71.6
0.00
0.00
0.00
0.00
0.00
0.00
BULK SOLVENT MODEL USED
0.268
0.005
0.233
0.234
0.233
2.99
100.23
2666
26800
26808
9.9
98.5
RANDOM
500.03
0.000000
1
RESTRAINED
THROUGHOUT
0.0
0
MOLECULAR REPLACEMENT
the FL SopB-18mer I23
Engh & Huber
FLAT MODEL
73.0147
0.35
0.43
0.45
5.00
0.53
0.49
2.99
100.23
0
2530
45
731
1754
0.006
1.1
17.4
1.04
1.99
1.50
3.49
2.00
3.92
2.00
6.06
2.50
0.417
0.019
0.443
3.18
480
3982
6
10.8
99.6
0.2
2.99
100
3MKW
26809
26809
0
0
0.05
0.06
1
10.6
5
100
0.448
2.99
3.10
2.0
2800
0.448
4
99.0
data collection
ADSC
Quantum
phasing
MOLREP
refinement
CNS
1.2
data reduction
MOSFLM
data scaling
SCALA
Structure of sopB(155-272)-18mer complex, I23 form
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
B
SER
159
C
SER
25
HELX_P
B
ASN
173
C
ASN
39
1
1
15
B
ASN
178
C
ASN
44
HELX_P
B
ASN
187
C
ASN
53
1
2
10
B
SER
189
C
SER
55
HELX_P
B
LEU
202
C
LEU
68
1
3
14
B
PRO
203
C
PRO
69
HELX_P
B
LEU
209
C
LEU
75
1
4
7
B
HIS
212
C
HIS
78
HELX_P
B
LEU
216
C
LEU
82
5
5
5
B
SER
217
C
SER
83
HELX_P
B
PHE
228
C
PHE
94
1
6
12
B
LYS
231
C
LYS
97
HELX_P
B
ALA
248
C
ALA
114
1
7
18
B
GLU
253
C
GLU
119
HELX_P
B
VAL
264
C
VAL
130
1
8
12
B
LEU
265
C
LEU
131
HELX_P
B
ALA
270
C
ALA
136
5
9
6
P
SER
159
D
SER
25
HELX_P
P
ASN
173
D
ASN
39
1
10
15
P
ASN
178
D
ASN
44
HELX_P
P
ASN
187
D
ASN
53
1
11
10
P
SER
189
D
SER
55
HELX_P
P
LYS
201
D
LYS
67
1
12
13
P
PRO
203
D
PRO
69
HELX_P
P
LEU
209
D
LEU
75
1
13
7
P
HIS
212
D
HIS
78
HELX_P
P
LEU
216
D
LEU
82
5
14
5
P
SER
217
D
SER
83
HELX_P
P
THR
229
D
THR
95
1
15
13
P
LYS
231
D
LYS
97
HELX_P
P
ALA
248
D
ALA
114
1
16
18
P
ALA
254
D
ALA
120
HELX_P
P
VAL
264
D
VAL
130
1
17
11
P
LYS
266
D
LYS
132
HELX_P
P
SER
271
D
SER
137
1
18
6
hydrog
WATSON-CRICK
U
DC
1
A
N3
DC
1
1_555
T
DG
18
B
N1
DG
18
1_555
hydrog
WATSON-CRICK
U
DC
1
A
N4
DC
1
1_555
T
DG
18
B
O6
DG
18
1_555
hydrog
WATSON-CRICK
U
DC
1
A
O2
DC
1
1_555
T
DG
18
B
N2
DG
18
1_555
hydrog
WATSON-CRICK
U
DT
2
A
N3
DT
2
1_555
T
DA
17
B
N1
DA
17
1_555
hydrog
WATSON-CRICK
U
DT
2
A
O4
DT
2
1_555
T
DA
17
B
N6
DA
17
1_555
hydrog
WATSON-CRICK
U
DG
3
A
N1
DG
3
1_555
T
DC
16
B
N3
DC
16
1_555
hydrog
WATSON-CRICK
U
DG
3
A
N2
DG
3
1_555
T
DC
16
B
O2
DC
16
1_555
hydrog
WATSON-CRICK
U
DG
3
A
O6
DG
3
1_555
T
DC
16
B
N4
DC
16
1_555
hydrog
WATSON-CRICK
U
DG
4
A
N1
DG
4
1_555
T
DC
15
B
N3
DC
15
1_555
hydrog
WATSON-CRICK
U
DG
4
A
N2
DG
4
1_555
T
DC
15
B
O2
DC
15
1_555
hydrog
WATSON-CRICK
U
DG
4
A
O6
DG
4
1_555
T
DC
15
B
N4
DC
15
1_555
hydrog
WATSON-CRICK
U
DG
5
A
N1
DG
5
1_555
T
DC
14
B
N3
DC
14
1_555
hydrog
WATSON-CRICK
U
DG
5
A
N2
DG
5
1_555
T
DC
14
B
O2
DC
14
1_555
hydrog
WATSON-CRICK
U
DG
5
A
O6
DG
5
1_555
T
DC
14
B
N4
DC
14
1_555
hydrog
WATSON-CRICK
U
DA
6
A
N1
DA
6
1_555
T
DT
13
B
N3
DT
13
1_555
hydrog
WATSON-CRICK
U
DA
6
A
N6
DA
6
1_555
T
DT
13
B
O4
DT
13
1_555
hydrog
WATSON-CRICK
U
DC
7
A
N3
DC
7
1_555
T
DG
12
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
U
DC
7
A
N4
DC
7
1_555
T
DG
12
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
U
DC
7
A
O2
DC
7
1_555
T
DG
12
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
U
DC
8
A
N3
DC
8
1_555
T
DG
11
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
U
DC
8
A
N4
DC
8
1_555
T
DG
11
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
U
DC
8
A
O2
DC
8
1_555
T
DG
11
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
U
DA
9
A
N1
DA
9
1_555
T
DT
10
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
U
DA
9
A
N6
DA
9
1_555
T
DT
10
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
U
DT
10
A
N3
DT
10
1_555
T
DA
9
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
U
DT
10
A
O4
DT
10
1_555
T
DA
9
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
U
DG
11
A
N1
DG
11
1_555
T
DC
8
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
U
DG
11
A
N2
DG
11
1_555
T
DC
8
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
U
DG
11
A
O6
DG
11
1_555
T
DC
8
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
U
DG
12
A
N1
DG
12
1_555
T
DC
7
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
U
DG
12
A
N2
DG
12
1_555
T
DC
7
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
U
DG
12
A
O6
DG
12
1_555
T
DC
7
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
U
DT
13
A
N3
DT
13
1_555
T
DA
6
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
U
DT
13
A
O4
DT
13
1_555
T
DA
6
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
U
DC
14
A
N3
DC
14
1_555
T
DG
5
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
U
DC
14
A
N4
DC
14
1_555
T
DG
5
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
U
DC
14
A
O2
DC
14
1_555
T
DG
5
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
U
DC
15
A
N3
DC
15
1_555
T
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
U
DC
15
A
N4
DC
15
1_555
T
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
U
DC
15
A
O2
DC
15
1_555
T
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
U
DC
16
A
N3
DC
16
1_555
T
DG
3
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
U
DC
16
A
N4
DC
16
1_555
T
DG
3
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
U
DC
16
A
O2
DC
16
1_555
T
DG
3
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
U
DA
17
A
N1
DA
17
1_555
T
DT
2
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
U
DA
17
A
N6
DA
17
1_555
T
DT
2
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
U
DG
18
A
N1
DG
18
1_555
T
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
U
DG
18
A
N2
DG
18
1_555
T
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
U
DG
18
A
O6
DG
18
1_555
T
DC
1
B
N4
DC
1
1_555
DNA BINDING PROTEIN/DNA
segregation, sopB, F plasmid, centromere, DNA BINDING PROTEIN-DNA complex
SOPB_ECOLI
UNP
2
155
P62558
YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPGELSARSGDALQKAFTDKEEL
LKQQASNLHEQKKAGVIFEAEEVITLLTSVLKTSSASR
3MKW
PDB
1
1
3MKW
CTGGGACCATGGTCCCAG
155
272
3MKW
155
272
P62558
B
1
21
138
155
272
3MKW
155
272
P62558
P
1
21
138
1
18
3MKW
1
18
3MKW
U
2
1
18
1
18
3MKW
1
18
3MKW
T
2
1
18
1
expression tag
MET
135
3MKW
B
P62558
UNP
1
1
expression tag
GLY
136
3MKW
B
P62558
UNP
2
1
expression tag
SER
137
3MKW
B
P62558
UNP
3
1
expression tag
SER
138
3MKW
B
P62558
UNP
4
1
expression tag
HIS
139
3MKW
B
P62558
UNP
5
1
expression tag
HIS
140
3MKW
B
P62558
UNP
6
1
expression tag
HIS
141
3MKW
B
P62558
UNP
7
1
expression tag
HIS
142
3MKW
B
P62558
UNP
8
1
expression tag
HIS
143
3MKW
B
P62558
UNP
9
1
expression tag
HIS
144
3MKW
B
P62558
UNP
10
1
expression tag
SER
145
3MKW
B
P62558
UNP
11
1
expression tag
SER
146
3MKW
B
P62558
UNP
12
1
expression tag
GLY
147
3MKW
B
P62558
UNP
13
1
expression tag
LEU
148
3MKW
B
P62558
UNP
14
1
expression tag
VAL
149
3MKW
B
P62558
UNP
15
1
expression tag
PRO
150
3MKW
B
P62558
UNP
16
1
expression tag
ARG
151
3MKW
B
P62558
UNP
17
1
expression tag
GLY
152
3MKW
B
P62558
UNP
18
1
expression tag
SER
153
3MKW
B
P62558
UNP
19
1
expression tag
HIS
154
3MKW
B
P62558
UNP
20
1
GLU
conflict
ASP
255
3MKW
B
P62558
UNP
255
121
2
expression tag
MET
135
3MKW
P
P62558
UNP
1
2
expression tag
GLY
136
3MKW
P
P62558
UNP
2
2
expression tag
SER
137
3MKW
P
P62558
UNP
3
2
expression tag
SER
138
3MKW
P
P62558
UNP
4
2
expression tag
HIS
139
3MKW
P
P62558
UNP
5
2
expression tag
HIS
140
3MKW
P
P62558
UNP
6
2
expression tag
HIS
141
3MKW
P
P62558
UNP
7
2
expression tag
HIS
142
3MKW
P
P62558
UNP
8
2
expression tag
HIS
143
3MKW
P
P62558
UNP
9
2
expression tag
HIS
144
3MKW
P
P62558
UNP
10
2
expression tag
SER
145
3MKW
P
P62558
UNP
11
2
expression tag
SER
146
3MKW
P
P62558
UNP
12
2
expression tag
GLY
147
3MKW
P
P62558
UNP
13
2
expression tag
LEU
148
3MKW
P
P62558
UNP
14
2
expression tag
VAL
149
3MKW
P
P62558
UNP
15
2
expression tag
PRO
150
3MKW
P
P62558
UNP
16
2
expression tag
ARG
151
3MKW
P
P62558
UNP
17
2
expression tag
GLY
152
3MKW
P
P62558
UNP
18
2
expression tag
SER
153
3MKW
P
P62558
UNP
19
2
expression tag
HIS
154
3MKW
P
P62558
UNP
20
2
GLU
conflict
ASP
255
3MKW
P
P62558
UNP
255
121
BINDING SITE FOR RESIDUE SO4 B 936
B
SO4
936
Software
2
BINDING SITE FOR RESIDUE SO4 B 836
B
SO4
836
Software
2
BINDING SITE FOR RESIDUE SO4 B 835
B
SO4
835
Software
3
BINDING SITE FOR RESIDUE SO4 P 273
P
SO4
273
Software
2
BINDING SITE FOR RESIDUE SO4 P 274
P
SO4
274
Software
3
BINDING SITE FOR RESIDUE SO4 P 335
P
SO4
335
Software
8
BINDING SITE FOR RESIDUE SO4 P 435
P
SO4
435
Software
2
BINDING SITE FOR RESIDUE SO4 P 865
P
SO4
865
Software
4
BINDING SITE FOR RESIDUE SO4 P 965
P
SO4
965
Software
3
B
ARG
190
C
ARG
56
2
1_555
T
DC
15
B
DC
15
2
1_555
B
ARG
219
C
ARG
85
2
1_555
U
DC
7
A
DC
7
2
1_555
B
LYS
201
C
LYS
67
3
1_555
B
GLN
225
C
GLN
91
3
1_555
B
GLU
232
C
GLU
98
3
1_555
P
ARG
219
D
ARG
85
2
1_555
T
DC
7
B
DC
7
2
19_655
P
SER
189
D
SER
55
3
1_555
P
ARG
190
D
ARG
56
3
1_555
U
DC
15
A
DC
15
3
19_655
P
LEU
209
D
LEU
75
8
1_555
P
PHE
210
D
PHE
76
8
1_555
P
SER
211
D
SER
77
8
1_555
P
GLU
215
D
GLU
81
8
1_555
P
LYS
246
D
LYS
112
8
1_555
P
PHE
252
D
PHE
118
8
1_555
P
GLU
253
D
GLU
119
8
1_555
P
ALA
254
D
ALA
120
8
1_555
P
PRO
203
D
PRO
69
2
1_555
P
LYS
204
D
LYS
70
2
1_555
P
LYS
201
D
LYS
67
4
1_555
P
GLN
225
D
GLN
91
4
1_555
P
PHE
228
D
PHE
94
4
1_555
P
GLU
232
D
GLU
98
4
1_555
P
LEU
265
D
LEU
131
3
1_555
P
LYS
266
D
LYS
132
3
1_555
P
THR
267
D
THR
133
3
1_555
197
I 2 3