0.004981 0.000000 0.000000 0.000000 0.004981 0.000000 0.000000 0.000000 0.004981 0.00000 0.00000 0.00000 Schumacher, M.A. Piro, K. Xu, W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 48 90.00 90.00 90.00 200.780 200.780 200.780 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 38 4514 4526 10.1093/nar/gkq161 20236989 Insight into F plasmid DNA segregation revealed by structures of SopB and SopB-DNA complexes. 2010 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors CCD 2008-10-12 ADSC QUANTUM 4 gaphite MAD M x-ray 1 0.98 1.0 8.3.1 ALS 0.98 SYNCHROTRON ALS BEAMLINE 8.3.1 5517.566 DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3') 2 syn polymer 20829.646 Protein sopB UNP residues 155 to 323 2 man polymer 96.063 SULFATE ION 10 syn non-polymer Plasmid partition protein B no no (DC)(DT)(DG)(DG)(DG)(DA)(DC)(DC)(DA)(DT)(DG)(DG)(DT)(DC)(DC)(DC)(DA)(DG) CTGGGACCATGGTCCCAG U,T polydeoxyribonucleotide no no MGSSHHHHHHSSGLVPRGSHYRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPG ELSARSGDALQKAFTDKEELLKQQASNLHEQKKAGVIFEADEVITLLTSVLKTSSASRTSLSSRHQFAPGATVLYKGDKM VLNLDRSRVPTECIEKIEAILKELEKPAP MGSSHHHHHHSSGLVPRGSHYRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPG ELSARSGDALQKAFTDKEELLKQQASNLHEQKKAGVIFEADEVITLLTSVLKTSSASRTSLSSRHQFAPGATVLYKGDKM VLNLDRSRVPTECIEKIEAILKELEKPAP B,P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n artificial gene K-12 sample B, ECOK12F047, plasmid, sopB 83333 Escherichia coli 562 Escherichia coli BL21(DE3) plasmid pET15b 1 6.40 80.78 VAPOR DIFFUSION, HANGING DROP 8.5 1.3 M ammonium sulphate, 0.1 M Tris pH 8.5 , 25% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 -2.337 1 19 U 1 T 18 -2.202 U_DC1:DG18_T 1 -10.876 -0.162 -0.061 -0.360 -12.125 1 20 U 2 T 17 2.091 U_DT2:DA17_T 2 -3.730 0.178 0.029 -0.444 3.723 1 19 U 3 T 16 -4.154 U_DG3:DC16_T 3 -1.687 -0.007 0.324 -0.158 -0.297 1 19 U 4 T 15 0.838 U_DG4:DC15_T 4 -3.044 -0.227 0.112 -0.384 4.130 1 19 U 5 T 14 0.564 U_DG5:DC14_T 5 -6.032 -0.359 0.116 -0.444 7.143 1 20 U 6 T 13 -4.167 U_DA6:DT13_T 6 -3.338 -0.764 0.133 -0.134 8.762 1 19 U 7 T 12 8.874 U_DC7:DG12_T 7 -5.446 0.185 -0.238 -0.123 -7.363 1 19 U 8 T 11 -5.459 U_DC8:DG11_T 8 -0.189 -0.201 0.071 -0.324 4.611 1 20 U 9 T 10 -4.328 U_DA9:DT10_T 9 -7.348 0.427 -0.012 -0.125 -4.806 1 20 U 10 T 9 -6.714 U_DT10:DA9_T 10 -6.082 -0.620 -0.165 -0.199 6.321 1 19 U 11 T 8 -1.291 U_DG11:DC8_T 11 -0.633 -0.489 -0.045 -0.441 -8.498 1 19 U 12 T 7 -0.042 U_DG12:DC7_T 12 -6.801 0.010 -0.333 -0.293 -4.738 1 20 U 13 T 6 -1.303 U_DT13:DA6_T 13 -2.688 0.339 0.076 -0.162 -0.735 1 19 U 14 T 5 2.400 U_DC14:DG5_T 14 -6.930 0.272 0.069 -0.403 -0.590 1 19 U 15 T 4 -1.381 U_DC15:DG4_T 15 -2.624 0.444 0.042 -0.381 -2.587 1 19 U 16 T 3 -1.720 U_DC16:DG3_T 16 -3.410 0.048 0.407 -0.283 9.802 1 20 U 17 T 2 2.815 U_DA17:DT2_T 17 -3.897 0.049 0.088 -0.446 -1.101 1 19 U 18 T 1 -2.684 U_DG18:DC1_T 18 -11.228 0.151 -0.172 -0.197 3.382 37.498 U U 1 2 13.583 T T 18 17 3.551 8.650 0.479 -0.472 UU_DC1DT2:DA17DG18_TT 1 2.909 -4.568 36.409 -1.953 -0.336 3.073 33.359 U U 2 3 3.991 T T 17 16 3.058 2.289 -0.280 0.206 UU_DT2DG3:DC16DA17_TT 2 -1.124 1.960 33.264 0.003 0.313 3.480 35.563 U U 3 4 -1.115 T T 16 15 3.429 -0.680 0.647 -0.246 UU_DG3DG4:DC15DC16_TT 3 3.608 -5.917 35.379 -0.297 -0.502 3.204 31.282 U U 4 5 4.882 T T 15 14 3.212 2.630 -0.539 -0.024 UU_DG4DG5:DC14DC15_TT 4 -0.337 0.625 31.172 -0.534 0.937 3.172 34.615 U U 5 6 3.347 T T 14 13 3.212 1.990 0.177 -0.549 UU_DG5DA6:DT13DC14_TT 5 -0.650 1.093 34.553 -1.222 -0.396 3.199 33.902 U U 6 7 4.250 T T 13 12 3.258 2.476 0.876 -0.838 UU_DA6DC7:DG12DT13_TT 6 0.330 -0.567 33.813 -1.831 -1.449 3.256 28.368 U U 7 8 16.490 T T 12 11 3.641 7.959 -1.282 -1.322 UU_DC7DC8:DG11DG12_TT 7 -3.248 6.729 27.060 -4.681 1.807 3.156 39.067 U U 8 9 6.911 T T 11 10 3.122 4.608 -0.159 0.634 UU_DC8DA9:DT10DG11_TT 8 2.704 -4.055 38.715 0.413 0.551 3.591 30.419 U U 9 10 -14.166 T T 10 9 3.473 -7.362 -0.098 -0.931 UU_DA9DT10:DA9DT10_TT 9 0.647 -1.246 29.528 -0.158 0.329 3.180 36.721 U U 10 11 8.696 T T 9 8 3.140 5.453 0.454 0.820 UU_DT10DG11:DC8DA9_TT 10 -2.963 4.725 36.210 0.577 -1.115 3.257 31.732 U U 11 12 16.156 T T 8 7 3.634 8.720 0.766 -1.053 UU_DG11DG12:DC7DC8_TT 11 1.904 -3.527 30.481 -3.650 -1.025 3.134 31.120 U U 12 13 4.966 T T 7 6 3.210 2.660 -0.613 -1.012 UU_DG12DT13:DA6DC7_TT 12 -1.132 2.113 30.989 -2.381 0.933 3.225 36.769 U U 13 14 -0.855 T T 6 5 3.225 -0.539 -0.055 -0.366 UU_DT13DC14:DG5DA6_TT 13 1.541 -2.444 36.734 -0.508 0.294 3.269 32.967 U U 14 15 7.788 T T 5 4 3.262 4.405 0.542 0.105 UU_DC14DC15:DG4DG5_TT 14 1.555 -2.749 32.643 -0.566 -0.689 3.451 35.812 U U 15 16 -0.098 T T 4 3 3.408 -0.060 -0.547 -0.159 UU_DC15DC16:DG3DG4_TT 15 -5.034 8.212 35.468 -0.249 0.127 3.082 32.984 U U 16 17 5.299 T T 3 2 3.104 3.004 0.346 -0.055 UU_DC16DA17:DT2DG3_TT 16 -0.486 0.857 32.847 -0.580 -0.687 3.515 37.937 U U 17 18 9.098 T T 2 1 3.588 5.890 -0.728 -0.432 UU_DA17DG18:DC1DT2_TT 17 -1.973 3.048 37.444 -1.487 0.844 repository Initial release Version format compliance Database references Structure summary 1 0 2010-05-05 1 1 2011-07-13 1 2 2015-01-21 SopB(155-272)-18mer,I23 crystal form SopB(155-272)-18mer complex, P21 form RCSB Y RCSB 2010-04-15 REL REL SO4 SULFATE ION The DNA was chemically synthesized. sample SO4 835 3 SO4 SO4 835 B SO4 836 3 SO4 SO4 836 B SO4 936 3 SO4 SO4 936 B SO4 135 3 SO4 SO4 324 B SO4 844 3 SO4 SO4 844 P SO4 846 3 SO4 SO4 846 P SO4 849 3 SO4 SO4 849 P SO4 945 3 SO4 SO4 945 P SO4 344 3 SO4 SO4 344 P SO4 845 3 SO4 SO4 845 P DC 1 n 1 DC 1 U DT 2 n 2 DT 2 U DG 3 n 3 DG 3 U DG 4 n 4 DG 4 U DG 5 n 5 DG 5 U DA 6 n 6 DA 6 U DC 7 n 7 DC 7 U DC 8 n 8 DC 8 U DA 9 n 9 DA 9 U DT 10 n 10 DT 10 U DG 11 n 11 DG 11 U DG 12 n 12 DG 12 U DT 13 n 13 DT 13 U DC 14 n 14 DC 14 U DC 15 n 15 DC 15 U DC 16 n 16 DC 16 U DA 17 n 17 DA 17 U DG 18 n 18 DG 18 U DC 1 n 1 DC 1 T DT 2 n 2 DT 2 T DG 3 n 3 DG 3 T DG 4 n 4 DG 4 T DG 5 n 5 DG 5 T DA 6 n 6 DA 6 T DC 7 n 7 DC 7 T DC 8 n 8 DC 8 T DA 9 n 9 DA 9 T DT 10 n 10 DT 10 T DG 11 n 11 DG 11 T DG 12 n 12 DG 12 T DT 13 n 13 DT 13 T DC 14 n 14 DC 14 T DC 15 n 15 DC 15 T DC 16 n 16 DC 16 T DA 17 n 17 DA 17 T DG 18 n 18 DG 18 T n 1 135 B n 2 136 B n 3 137 B n 4 138 B n 5 139 B n 6 140 B n 7 141 B n 8 142 B n 9 143 B n 10 144 B n 11 145 B n 12 146 B n 13 147 B n 14 148 B n 15 149 B n 16 150 B n 17 151 B n 18 152 B n 19 153 B n 20 154 B n 21 155 B n 22 156 B PRO 157 n 23 PRO 157 B THR 158 n 24 THR 158 B SER 159 n 25 SER 159 B ALA 160 n 26 ALA 160 B TYR 161 n 27 TYR 161 B GLU 162 n 28 GLU 162 B ARG 163 n 29 ARG 163 B GLY 164 n 30 GLY 164 B GLN 165 n 31 GLN 165 B ARG 166 n 32 ARG 166 B TYR 167 n 33 TYR 167 B ALA 168 n 34 ALA 168 B SER 169 n 35 SER 169 B ARG 170 n 36 ARG 170 B LEU 171 n 37 LEU 171 B GLN 172 n 38 GLN 172 B ASN 173 n 39 ASN 173 B GLU 174 n 40 GLU 174 B PHE 175 n 41 PHE 175 B ALA 176 n 42 ALA 176 B GLY 177 n 43 GLY 177 B ASN 178 n 44 ASN 178 B ILE 179 n 45 ILE 179 B SER 180 n 46 SER 180 B ALA 181 n 47 ALA 181 B LEU 182 n 48 LEU 182 B ALA 183 n 49 ALA 183 B ASP 184 n 50 ASP 184 B ALA 185 n 51 ALA 185 B GLU 186 n 52 GLU 186 B ASN 187 n 53 ASN 187 B ILE 188 n 54 ILE 188 B SER 189 n 55 SER 189 B ARG 190 n 56 ARG 190 B LYS 191 n 57 LYS 191 B ILE 192 n 58 ILE 192 B ILE 193 n 59 ILE 193 B THR 194 n 60 THR 194 B ARG 195 n 61 ARG 195 B CYS 196 n 62 CYS 196 B ILE 197 n 63 ILE 197 B ASN 198 n 64 ASN 198 B THR 199 n 65 THR 199 B ALA 200 n 66 ALA 200 B LYS 201 n 67 LYS 201 B LEU 202 n 68 LEU 202 B PRO 203 n 69 PRO 203 B LYS 204 n 70 LYS 204 B SER 205 n 71 SER 205 B VAL 206 n 72 VAL 206 B VAL 207 n 73 VAL 207 B ALA 208 n 74 ALA 208 B LEU 209 n 75 LEU 209 B PHE 210 n 76 PHE 210 B SER 211 n 77 SER 211 B HIS 212 n 78 HIS 212 B PRO 213 n 79 PRO 213 B GLY 214 n 80 GLY 214 B GLU 215 n 81 GLU 215 B LEU 216 n 82 LEU 216 B SER 217 n 83 SER 217 B ALA 218 n 84 ALA 218 B ARG 219 n 85 ARG 219 B SER 220 n 86 SER 220 B GLY 221 n 87 GLY 221 B ASP 222 n 88 ASP 222 B ALA 223 n 89 ALA 223 B LEU 224 n 90 LEU 224 B GLN 225 n 91 GLN 225 B LYS 226 n 92 LYS 226 B ALA 227 n 93 ALA 227 B PHE 228 n 94 PHE 228 B THR 229 n 95 THR 229 B ASP 230 n 96 ASP 230 B LYS 231 n 97 LYS 231 B GLU 232 n 98 GLU 232 B GLU 233 n 99 GLU 233 B LEU 234 n 100 LEU 234 B LEU 235 n 101 LEU 235 B LYS 236 n 102 LYS 236 B GLN 237 n 103 GLN 237 B GLN 238 n 104 GLN 238 B ALA 239 n 105 ALA 239 B SER 240 n 106 SER 240 B ASN 241 n 107 ASN 241 B LEU 242 n 108 LEU 242 B HIS 243 n 109 HIS 243 B GLU 244 n 110 GLU 244 B GLN 245 n 111 GLN 245 B LYS 246 n 112 LYS 246 B LYS 247 n 113 LYS 247 B ALA 248 n 114 ALA 248 B GLY 249 n 115 GLY 249 B VAL 250 n 116 VAL 250 B ILE 251 n 117 ILE 251 B PHE 252 n 118 PHE 252 B GLU 253 n 119 GLU 253 B ALA 254 n 120 ALA 254 B ASP 255 n 121 ASP 255 B GLU 256 n 122 GLU 256 B VAL 257 n 123 VAL 257 B ILE 258 n 124 ILE 258 B THR 259 n 125 THR 259 B LEU 260 n 126 LEU 260 B LEU 261 n 127 LEU 261 B THR 262 n 128 THR 262 B SER 263 n 129 SER 263 B VAL 264 n 130 VAL 264 B LEU 265 n 131 LEU 265 B LYS 266 n 132 LYS 266 B THR 267 n 133 THR 267 B SER 268 n 134 SER 268 B SER 269 n 135 SER 269 B ALA 270 n 136 ALA 270 B SER 271 n 137 SER 271 B n 138 272 B n 139 273 B n 140 274 B n 141 275 B n 142 276 B n 143 277 B n 144 278 B n 145 279 B n 146 280 B n 147 281 B n 148 282 B n 149 283 B n 150 284 B n 151 285 B n 152 286 B n 153 287 B n 154 288 B n 155 289 B n 156 290 B n 157 291 B n 158 292 B n 159 293 B n 160 294 B n 161 295 B n 162 296 B n 163 297 B n 164 298 B n 165 299 B n 166 300 B n 167 301 B n 168 302 B n 169 303 B n 170 304 B n 171 305 B n 172 306 B n 173 307 B n 174 308 B n 175 309 B n 176 310 B n 177 311 B n 178 312 B n 179 313 B n 180 314 B n 181 315 B n 182 316 B n 183 317 B n 184 318 B n 185 319 B n 186 320 B n 187 321 B n 188 322 B n 189 323 B n 1 135 P n 2 136 P n 3 137 P n 4 138 P n 5 139 P n 6 140 P n 7 141 P n 8 142 P n 9 143 P n 10 144 P n 11 145 P n 12 146 P n 13 147 P n 14 148 P n 15 149 P n 16 150 P n 17 151 P n 18 152 P n 19 153 P n 20 154 P n 21 155 P n 22 156 P PRO 157 n 23 PRO 157 P THR 158 n 24 THR 158 P SER 159 n 25 SER 159 P ALA 160 n 26 ALA 160 P TYR 161 n 27 TYR 161 P GLU 162 n 28 GLU 162 P ARG 163 n 29 ARG 163 P GLY 164 n 30 GLY 164 P GLN 165 n 31 GLN 165 P ARG 166 n 32 ARG 166 P TYR 167 n 33 TYR 167 P ALA 168 n 34 ALA 168 P SER 169 n 35 SER 169 P ARG 170 n 36 ARG 170 P LEU 171 n 37 LEU 171 P GLN 172 n 38 GLN 172 P ASN 173 n 39 ASN 173 P GLU 174 n 40 GLU 174 P PHE 175 n 41 PHE 175 P ALA 176 n 42 ALA 176 P GLY 177 n 43 GLY 177 P ASN 178 n 44 ASN 178 P ILE 179 n 45 ILE 179 P SER 180 n 46 SER 180 P ALA 181 n 47 ALA 181 P LEU 182 n 48 LEU 182 P ALA 183 n 49 ALA 183 P ASP 184 n 50 ASP 184 P ALA 185 n 51 ALA 185 P GLU 186 n 52 GLU 186 P ASN 187 n 53 ASN 187 P ILE 188 n 54 ILE 188 P SER 189 n 55 SER 189 P ARG 190 n 56 ARG 190 P LYS 191 n 57 LYS 191 P ILE 192 n 58 ILE 192 P ILE 193 n 59 ILE 193 P THR 194 n 60 THR 194 P ARG 195 n 61 ARG 195 P CYS 196 n 62 CYS 196 P ILE 197 n 63 ILE 197 P ASN 198 n 64 ASN 198 P THR 199 n 65 THR 199 P ALA 200 n 66 ALA 200 P LYS 201 n 67 LYS 201 P LEU 202 n 68 LEU 202 P PRO 203 n 69 PRO 203 P LYS 204 n 70 LYS 204 P SER 205 n 71 SER 205 P VAL 206 n 72 VAL 206 P VAL 207 n 73 VAL 207 P ALA 208 n 74 ALA 208 P LEU 209 n 75 LEU 209 P PHE 210 n 76 PHE 210 P SER 211 n 77 SER 211 P HIS 212 n 78 HIS 212 P PRO 213 n 79 PRO 213 P GLY 214 n 80 GLY 214 P GLU 215 n 81 GLU 215 P LEU 216 n 82 LEU 216 P SER 217 n 83 SER 217 P ALA 218 n 84 ALA 218 P ARG 219 n 85 ARG 219 P SER 220 n 86 SER 220 P GLY 221 n 87 GLY 221 P ASP 222 n 88 ASP 222 P ALA 223 n 89 ALA 223 P LEU 224 n 90 LEU 224 P GLN 225 n 91 GLN 225 P LYS 226 n 92 LYS 226 P ALA 227 n 93 ALA 227 P PHE 228 n 94 PHE 228 P THR 229 n 95 THR 229 P ASP 230 n 96 ASP 230 P LYS 231 n 97 LYS 231 P GLU 232 n 98 GLU 232 P GLU 233 n 99 GLU 233 P LEU 234 n 100 LEU 234 P LEU 235 n 101 LEU 235 P LYS 236 n 102 LYS 236 P GLN 237 n 103 GLN 237 P GLN 238 n 104 GLN 238 P ALA 239 n 105 ALA 239 P SER 240 n 106 SER 240 P ASN 241 n 107 ASN 241 P LEU 242 n 108 LEU 242 P HIS 243 n 109 HIS 243 P GLU 244 n 110 GLU 244 P GLN 245 n 111 GLN 245 P LYS 246 n 112 LYS 246 P LYS 247 n 113 LYS 247 P ALA 248 n 114 ALA 248 P GLY 249 n 115 GLY 249 P VAL 250 n 116 VAL 250 P ILE 251 n 117 ILE 251 P PHE 252 n 118 PHE 252 P GLU 253 n 119 GLU 253 P ALA 254 n 120 ALA 254 P ASP 255 n 121 ASP 255 P GLU 256 n 122 GLU 256 P VAL 257 n 123 VAL 257 P ILE 258 n 124 ILE 258 P THR 259 n 125 THR 259 P LEU 260 n 126 LEU 260 P LEU 261 n 127 LEU 261 P THR 262 n 128 THR 262 P SER 263 n 129 SER 263 P VAL 264 n 130 VAL 264 P LEU 265 n 131 LEU 265 P LYS 266 n 132 LYS 266 P THR 267 n 133 THR 267 P SER 268 n 134 SER 268 P SER 269 n 135 SER 269 P ALA 270 n 136 ALA 270 P n 137 271 P n 138 272 P n 139 273 P n 140 274 P n 141 275 P n 142 276 P n 143 277 P n 144 278 P n 145 279 P n 146 280 P n 147 281 P n 148 282 P n 149 283 P n 150 284 P n 151 285 P n 152 286 P n 153 287 P n 154 288 P n 155 289 P n 156 290 P n 157 291 P n 158 292 P n 159 293 P n 160 294 P n 161 295 P n 162 296 P n 163 297 P n 164 298 P n 165 299 P n 166 300 P n 167 301 P n 168 302 P n 169 303 P n 170 304 P n 171 305 P n 172 306 P n 173 307 P n 174 308 P n 175 309 P n 176 310 P n 177 311 P n 178 312 P n 179 313 P n 180 314 P n 181 315 P n 182 316 P n 183 317 P n 184 318 P n 185 319 P n 186 320 P n 187 321 P n 188 322 P n 189 323 P author_defined_assembly 4 tetrameric software_defined_assembly PISA 4 tetrameric 6940 -180 17120 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -1.0000000000 0.0000000000 0.0000000000 23_555 y+1/2,-z+1/2,-x+1/2 crystal symmetry operation 100.3900000000 100.3900000000 100.3900000000 1 B OG SER 271 C OG SER 137 1 Y 1 B MET 135 C MET 1 1 Y 1 B GLY 136 C GLY 2 1 Y 1 B SER 137 C SER 3 1 Y 1 B SER 138 C SER 4 1 Y 1 B HIS 139 C HIS 5 1 Y 1 B HIS 140 C HIS 6 1 Y 1 B HIS 141 C HIS 7 1 Y 1 B HIS 142 C HIS 8 1 Y 1 B HIS 143 C HIS 9 1 Y 1 B HIS 144 C HIS 10 1 Y 1 B SER 145 C SER 11 1 Y 1 B SER 146 C SER 12 1 Y 1 B GLY 147 C GLY 13 1 Y 1 B LEU 148 C LEU 14 1 Y 1 B VAL 149 C VAL 15 1 Y 1 B PRO 150 C PRO 16 1 Y 1 B ARG 151 C ARG 17 1 Y 1 B GLY 152 C GLY 18 1 Y 1 B SER 153 C SER 19 1 Y 1 B HIS 154 C HIS 20 1 Y 1 B TYR 155 C TYR 21 1 Y 1 B ARG 156 C ARG 22 1 Y 1 B ARG 272 C ARG 138 1 Y 1 B THR 273 C THR 139 1 Y 1 B SER 274 C SER 140 1 Y 1 B LEU 275 C LEU 141 1 Y 1 B SER 276 C SER 142 1 Y 1 B SER 277 C SER 143 1 Y 1 B ARG 278 C ARG 144 1 Y 1 B HIS 279 C HIS 145 1 Y 1 B GLN 280 C GLN 146 1 Y 1 B PHE 281 C PHE 147 1 Y 1 B ALA 282 C ALA 148 1 Y 1 B PRO 283 C PRO 149 1 Y 1 B GLY 284 C GLY 150 1 Y 1 B ALA 285 C ALA 151 1 Y 1 B THR 286 C THR 152 1 Y 1 B VAL 287 C VAL 153 1 Y 1 B LEU 288 C LEU 154 1 Y 1 B TYR 289 C TYR 155 1 Y 1 B LYS 290 C LYS 156 1 Y 1 B GLY 291 C GLY 157 1 Y 1 B ASP 292 C ASP 158 1 Y 1 B LYS 293 C LYS 159 1 Y 1 B MET 294 C MET 160 1 Y 1 B VAL 295 C VAL 161 1 Y 1 B LEU 296 C LEU 162 1 Y 1 B ASN 297 C ASN 163 1 Y 1 B LEU 298 C LEU 164 1 Y 1 B ASP 299 C ASP 165 1 Y 1 B ARG 300 C ARG 166 1 Y 1 B SER 301 C SER 167 1 Y 1 B ARG 302 C ARG 168 1 Y 1 B VAL 303 C VAL 169 1 Y 1 B PRO 304 C PRO 170 1 Y 1 B THR 305 C THR 171 1 Y 1 B GLU 306 C GLU 172 1 Y 1 B CYS 307 C CYS 173 1 Y 1 B ILE 308 C ILE 174 1 Y 1 B GLU 309 C GLU 175 1 Y 1 B LYS 310 C LYS 176 1 Y 1 B ILE 311 C ILE 177 1 Y 1 B GLU 312 C GLU 178 1 Y 1 B ALA 313 C ALA 179 1 Y 1 B ILE 314 C ILE 180 1 Y 1 B LEU 315 C LEU 181 1 Y 1 B LYS 316 C LYS 182 1 Y 1 B GLU 317 C GLU 183 1 Y 1 B LEU 318 C LEU 184 1 Y 1 B GLU 319 C GLU 185 1 Y 1 B LYS 320 C LYS 186 1 Y 1 B PRO 321 C PRO 187 1 Y 1 B ALA 322 C ALA 188 1 Y 1 B PRO 323 C PRO 189 1 Y 1 P MET 135 D MET 1 1 Y 1 P GLY 136 D GLY 2 1 Y 1 P SER 137 D SER 3 1 Y 1 P SER 138 D SER 4 1 Y 1 P HIS 139 D HIS 5 1 Y 1 P HIS 140 D HIS 6 1 Y 1 P HIS 141 D HIS 7 1 Y 1 P HIS 142 D HIS 8 1 Y 1 P HIS 143 D HIS 9 1 Y 1 P HIS 144 D HIS 10 1 Y 1 P SER 145 D SER 11 1 Y 1 P SER 146 D SER 12 1 Y 1 P GLY 147 D GLY 13 1 Y 1 P LEU 148 D LEU 14 1 Y 1 P VAL 149 D VAL 15 1 Y 1 P PRO 150 D PRO 16 1 Y 1 P ARG 151 D ARG 17 1 Y 1 P GLY 152 D GLY 18 1 Y 1 P SER 153 D SER 19 1 Y 1 P HIS 154 D HIS 20 1 Y 1 P TYR 155 D TYR 21 1 Y 1 P ARG 156 D ARG 22 1 Y 1 P SER 271 D SER 137 1 Y 1 P ARG 272 D ARG 138 1 Y 1 P THR 273 D THR 139 1 Y 1 P SER 274 D SER 140 1 Y 1 P LEU 275 D LEU 141 1 Y 1 P SER 276 D SER 142 1 Y 1 P SER 277 D SER 143 1 Y 1 P ARG 278 D ARG 144 1 Y 1 P HIS 279 D HIS 145 1 Y 1 P GLN 280 D GLN 146 1 Y 1 P PHE 281 D PHE 147 1 Y 1 P ALA 282 D ALA 148 1 Y 1 P PRO 283 D PRO 149 1 Y 1 P GLY 284 D GLY 150 1 Y 1 P ALA 285 D ALA 151 1 Y 1 P THR 286 D THR 152 1 Y 1 P VAL 287 D VAL 153 1 Y 1 P LEU 288 D LEU 154 1 Y 1 P TYR 289 D TYR 155 1 Y 1 P LYS 290 D LYS 156 1 Y 1 P GLY 291 D GLY 157 1 Y 1 P ASP 292 D ASP 158 1 Y 1 P LYS 293 D LYS 159 1 Y 1 P MET 294 D MET 160 1 Y 1 P VAL 295 D VAL 161 1 Y 1 P LEU 296 D LEU 162 1 Y 1 P ASN 297 D ASN 163 1 Y 1 P LEU 298 D LEU 164 1 Y 1 P ASP 299 D ASP 165 1 Y 1 P ARG 300 D ARG 166 1 Y 1 P SER 301 D SER 167 1 Y 1 P ARG 302 D ARG 168 1 Y 1 P VAL 303 D VAL 169 1 Y 1 P PRO 304 D PRO 170 1 Y 1 P THR 305 D THR 171 1 Y 1 P GLU 306 D GLU 172 1 Y 1 P CYS 307 D CYS 173 1 Y 1 P ILE 308 D ILE 174 1 Y 1 P GLU 309 D GLU 175 1 Y 1 P LYS 310 D LYS 176 1 Y 1 P ILE 311 D ILE 177 1 Y 1 P GLU 312 D GLU 178 1 Y 1 P ALA 313 D ALA 179 1 Y 1 P ILE 314 D ILE 180 1 Y 1 P LEU 315 D LEU 181 1 Y 1 P LYS 316 D LYS 182 1 Y 1 P GLU 317 D GLU 183 1 Y 1 P LEU 318 D LEU 184 1 Y 1 P GLU 319 D GLU 185 1 Y 1 P LYS 320 D LYS 186 1 Y 1 P PRO 321 D PRO 187 1 Y 1 P ALA 322 D ALA 188 1 Y 1 P PRO 323 D PRO 189 1 Y 1 U DG 12 0.064 SIDE CHAIN 1 T DC 1 0.059 SIDE CHAIN 1 T DT 2 0.068 SIDE CHAIN 1 T DG 12 0.071 SIDE CHAIN 1 T DG 18 0.053 SIDE CHAIN 1 B ASN 173 -100.31 -76.57 1 B PHE 175 -141.30 26.85 1 B GLN 237 -53.76 -70.70 1 B ALA 248 -88.92 39.74 1 B ALA 254 -7.38 -81.79 1 P ASN 173 -90.46 -85.42 1 P GLU 174 -39.46 -27.86 1 P ALA 176 37.90 58.84 1 P LYS 231 -152.43 22.47 1 P ALA 254 3.05 -97.47 1 P ASP 255 -37.37 -39.09 1 P SER 268 -51.13 -94.14 protein_rep.param protein.top water_rep.param water.top ion.param ion.top dna-rna_rep.param dna-rna.top 71.5 0.00 0.00 0.00 0.00 0.00 0.00 BULK SOLVENT MODEL USED 0.266 0.005 0.242 0.242 0.242 2.86 63.49 3067 30569 30569 10.0 98.0 RANDOM 1278407.89 0.000000 1 RESTRAINED THROUGHOUT 0.0 0 MAD Engh & Huber FLAT MODEL 60.2856 0.35 0.54 0.50 5.00 0.64 0.63 2.86 63.49 0 2531 50 732 1749 0.006 1.2 17.8 1.07 1.51 1.50 2.67 2.00 3.11 2.00 4.95 2.50 0.518 0.024 0.516 3.04 452 4346 6 9.4 93.5 104.5 2.86 141 3MKY 30600 30569 0 0 0.044 0.044 1 12.7 5 99 data collection ADSC Quantum phasing SOLVE refinement CNS 1.2 data reduction MOSFLM data scaling SCALA PROTEIN/DNA Complex Structure of SopB(155-323)-18mer DNA complex, I23 form 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N SopB(155-323) forms a primary dimer on the palindromic DNA and secondary dimer between DNA sites. B SER 159 C SER 25 HELX_P B ASN 173 C ASN 39 1 1 15 B ASN 178 C ASN 44 HELX_P B ASN 187 C ASN 53 1 2 10 B SER 189 C SER 55 HELX_P B LEU 202 C LEU 68 1 3 14 B PRO 203 C PRO 69 HELX_P B LEU 209 C LEU 75 1 4 7 B HIS 212 C HIS 78 HELX_P B LEU 216 C LEU 82 5 5 5 B SER 217 C SER 83 HELX_P B PHE 228 C PHE 94 1 6 12 B LYS 231 C LYS 97 HELX_P B ALA 248 C ALA 114 1 7 18 B GLU 253 C GLU 119 HELX_P B VAL 264 C VAL 130 1 8 12 B LEU 265 C LEU 131 HELX_P B ALA 270 C ALA 136 5 9 6 P SER 159 D SER 25 HELX_P P ASN 173 D ASN 39 1 10 15 P ASN 178 D ASN 44 HELX_P P ASN 187 D ASN 53 1 11 10 P SER 189 D SER 55 HELX_P P LYS 201 D LYS 67 1 12 13 P PRO 203 D PRO 69 HELX_P P LEU 209 D LEU 75 1 13 7 P HIS 212 D HIS 78 HELX_P P LEU 216 D LEU 82 5 14 5 P SER 217 D SER 83 HELX_P P PHE 228 D PHE 94 1 15 12 P LYS 231 D LYS 97 HELX_P P ALA 248 D ALA 114 1 16 18 P GLU 253 D GLU 119 HELX_P P VAL 264 D VAL 130 1 17 12 hydrog WATSON-CRICK U DC 1 A N3 DC 1 1_555 T DG 18 B N1 DG 18 1_555 hydrog WATSON-CRICK U DC 1 A N4 DC 1 1_555 T DG 18 B O6 DG 18 1_555 hydrog WATSON-CRICK U DC 1 A O2 DC 1 1_555 T DG 18 B N2 DG 18 1_555 hydrog WATSON-CRICK U DT 2 A N3 DT 2 1_555 T DA 17 B N1 DA 17 1_555 hydrog WATSON-CRICK U DT 2 A O4 DT 2 1_555 T DA 17 B N6 DA 17 1_555 hydrog WATSON-CRICK U DG 3 A N1 DG 3 1_555 T DC 16 B N3 DC 16 1_555 hydrog WATSON-CRICK U DG 3 A N2 DG 3 1_555 T DC 16 B O2 DC 16 1_555 hydrog WATSON-CRICK U DG 3 A O6 DG 3 1_555 T DC 16 B N4 DC 16 1_555 hydrog WATSON-CRICK U DG 4 A N1 DG 4 1_555 T DC 15 B N3 DC 15 1_555 hydrog WATSON-CRICK U DG 4 A N2 DG 4 1_555 T DC 15 B O2 DC 15 1_555 hydrog WATSON-CRICK U DG 4 A O6 DG 4 1_555 T DC 15 B N4 DC 15 1_555 hydrog WATSON-CRICK U DG 5 A N1 DG 5 1_555 T DC 14 B N3 DC 14 1_555 hydrog WATSON-CRICK U DG 5 A N2 DG 5 1_555 T DC 14 B O2 DC 14 1_555 hydrog WATSON-CRICK U DG 5 A O6 DG 5 1_555 T DC 14 B N4 DC 14 1_555 hydrog WATSON-CRICK U DA 6 A N1 DA 6 1_555 T DT 13 B N3 DT 13 1_555 hydrog WATSON-CRICK U DA 6 A N6 DA 6 1_555 T DT 13 B O4 DT 13 1_555 hydrog WATSON-CRICK U DC 7 A N3 DC 7 1_555 T DG 12 B N1 DG 12 1_555 hydrog WATSON-CRICK U DC 7 A N4 DC 7 1_555 T DG 12 B O6 DG 12 1_555 hydrog WATSON-CRICK U DC 7 A O2 DC 7 1_555 T DG 12 B N2 DG 12 1_555 hydrog WATSON-CRICK U DC 8 A N3 DC 8 1_555 T DG 11 B N1 DG 11 1_555 hydrog WATSON-CRICK U DC 8 A N4 DC 8 1_555 T DG 11 B O6 DG 11 1_555 hydrog WATSON-CRICK U DC 8 A O2 DC 8 1_555 T DG 11 B N2 DG 11 1_555 hydrog WATSON-CRICK U DA 9 A N1 DA 9 1_555 T DT 10 B N3 DT 10 1_555 hydrog WATSON-CRICK U DA 9 A N6 DA 9 1_555 T DT 10 B O4 DT 10 1_555 hydrog WATSON-CRICK U DT 10 A N3 DT 10 1_555 T DA 9 B N1 DA 9 1_555 hydrog WATSON-CRICK U DT 10 A O4 DT 10 1_555 T DA 9 B N6 DA 9 1_555 hydrog WATSON-CRICK U DG 11 A N1 DG 11 1_555 T DC 8 B N3 DC 8 1_555 hydrog WATSON-CRICK U DG 11 A N2 DG 11 1_555 T DC 8 B O2 DC 8 1_555 hydrog WATSON-CRICK U DG 11 A O6 DG 11 1_555 T DC 8 B N4 DC 8 1_555 hydrog WATSON-CRICK U DG 12 A N1 DG 12 1_555 T DC 7 B N3 DC 7 1_555 hydrog WATSON-CRICK U DG 12 A N2 DG 12 1_555 T DC 7 B O2 DC 7 1_555 hydrog WATSON-CRICK U DG 12 A O6 DG 12 1_555 T DC 7 B N4 DC 7 1_555 hydrog WATSON-CRICK U DT 13 A N3 DT 13 1_555 T DA 6 B N1 DA 6 1_555 hydrog WATSON-CRICK U DT 13 A O4 DT 13 1_555 T DA 6 B N6 DA 6 1_555 hydrog WATSON-CRICK U DC 14 A N3 DC 14 1_555 T DG 5 B N1 DG 5 1_555 hydrog WATSON-CRICK U DC 14 A N4 DC 14 1_555 T DG 5 B O6 DG 5 1_555 hydrog WATSON-CRICK U DC 14 A O2 DC 14 1_555 T DG 5 B N2 DG 5 1_555 hydrog WATSON-CRICK U DC 15 A N3 DC 15 1_555 T DG 4 B N1 DG 4 1_555 hydrog WATSON-CRICK U DC 15 A N4 DC 15 1_555 T DG 4 B O6 DG 4 1_555 hydrog WATSON-CRICK U DC 15 A O2 DC 15 1_555 T DG 4 B N2 DG 4 1_555 hydrog WATSON-CRICK U DC 16 A N3 DC 16 1_555 T DG 3 B N1 DG 3 1_555 hydrog WATSON-CRICK U DC 16 A N4 DC 16 1_555 T DG 3 B O6 DG 3 1_555 hydrog WATSON-CRICK U DC 16 A O2 DC 16 1_555 T DG 3 B N2 DG 3 1_555 hydrog WATSON-CRICK U DA 17 A N1 DA 17 1_555 T DT 2 B N3 DT 2 1_555 hydrog WATSON-CRICK U DA 17 A N6 DA 17 1_555 T DT 2 B O4 DT 2 1_555 hydrog WATSON-CRICK U DG 18 A N1 DG 18 1_555 T DC 1 B N3 DC 1 1_555 hydrog WATSON-CRICK U DG 18 A N2 DG 18 1_555 T DC 1 B O2 DC 1 1_555 hydrog WATSON-CRICK U DG 18 A O6 DG 18 1_555 T DC 1 B N4 DC 1 1_555 DNA BINDING PROTEIN/DNA partition, F plasmid, sopB, centromere, DNA BINDING PROTEIN-DNA complex SOPB_ECOLI UNP 2 155 P62558 YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPGELSARSGDALQKAFTDKEEL LKQQASNLHEQKKAGVIFEAEEVITLLTSVLKTSSASRTSLSSRHQFAPGATVLYKGDKMVLNLDRSRVPTECIEKIEAI LKELEKPAP 3MKY PDB 1 1 3MKY 155 323 3MKY 155 323 P62558 B 1 21 189 155 323 3MKY 155 323 P62558 P 1 21 189 1 18 3MKY 1 18 3MKY U 2 1 18 1 18 3MKY 1 18 3MKY T 2 1 18 1 EXPRESSION TAG MET 135 3MKY B P62558 UNP 1 1 EXPRESSION TAG GLY 136 3MKY B P62558 UNP 2 1 EXPRESSION TAG SER 137 3MKY B P62558 UNP 3 1 EXPRESSION TAG SER 138 3MKY B P62558 UNP 4 1 EXPRESSION TAG HIS 139 3MKY B P62558 UNP 5 1 EXPRESSION TAG HIS 140 3MKY B P62558 UNP 6 1 EXPRESSION TAG HIS 141 3MKY B P62558 UNP 7 1 EXPRESSION TAG HIS 142 3MKY B P62558 UNP 8 1 EXPRESSION TAG HIS 143 3MKY B P62558 UNP 9 1 EXPRESSION TAG HIS 144 3MKY B P62558 UNP 10 1 EXPRESSION TAG SER 145 3MKY B P62558 UNP 11 1 EXPRESSION TAG SER 146 3MKY B P62558 UNP 12 1 EXPRESSION TAG GLY 147 3MKY B P62558 UNP 13 1 EXPRESSION TAG LEU 148 3MKY B P62558 UNP 14 1 EXPRESSION TAG VAL 149 3MKY B P62558 UNP 15 1 EXPRESSION TAG PRO 150 3MKY B P62558 UNP 16 1 EXPRESSION TAG ARG 151 3MKY B P62558 UNP 17 1 EXPRESSION TAG GLY 152 3MKY B P62558 UNP 18 1 EXPRESSION TAG SER 153 3MKY B P62558 UNP 19 1 EXPRESSION TAG HIS 154 3MKY B P62558 UNP 20 1 GLU CONFLICT ASP 255 3MKY B P62558 UNP 255 121 2 EXPRESSION TAG MET 135 3MKY P P62558 UNP 1 2 EXPRESSION TAG GLY 136 3MKY P P62558 UNP 2 2 EXPRESSION TAG SER 137 3MKY P P62558 UNP 3 2 EXPRESSION TAG SER 138 3MKY P P62558 UNP 4 2 EXPRESSION TAG HIS 139 3MKY P P62558 UNP 5 2 EXPRESSION TAG HIS 140 3MKY P P62558 UNP 6 2 EXPRESSION TAG HIS 141 3MKY P P62558 UNP 7 2 EXPRESSION TAG HIS 142 3MKY P P62558 UNP 8 2 EXPRESSION TAG HIS 143 3MKY P P62558 UNP 9 2 EXPRESSION TAG HIS 144 3MKY P P62558 UNP 10 2 EXPRESSION TAG SER 145 3MKY P P62558 UNP 11 2 EXPRESSION TAG SER 146 3MKY P P62558 UNP 12 2 EXPRESSION TAG GLY 147 3MKY P P62558 UNP 13 2 EXPRESSION TAG LEU 148 3MKY P P62558 UNP 14 2 EXPRESSION TAG VAL 149 3MKY P P62558 UNP 15 2 EXPRESSION TAG PRO 150 3MKY P P62558 UNP 16 2 EXPRESSION TAG ARG 151 3MKY P P62558 UNP 17 2 EXPRESSION TAG GLY 152 3MKY P P62558 UNP 18 2 EXPRESSION TAG SER 153 3MKY P P62558 UNP 19 2 EXPRESSION TAG HIS 154 3MKY P P62558 UNP 20 2 GLU CONFLICT ASP 255 3MKY P P62558 UNP 255 121 BINDING SITE FOR RESIDUE SO4 B 835 Software 5 BINDING SITE FOR RESIDUE SO4 B 836 Software 2 BINDING SITE FOR RESIDUE SO4 P 844 Software 3 BINDING SITE FOR RESIDUE SO4 P 846 Software 2 BINDING SITE FOR RESIDUE SO4 P 849 Software 3 BINDING SITE FOR RESIDUE SO4 P 945 Software 3 BINDING SITE FOR RESIDUE SO4 B 936 Software 3 BINDING SITE FOR RESIDUE SO4 P 344 Software 7 BINDING SITE FOR RESIDUE SO4 P 845 Software 4 BINDING SITE FOR RESIDUE SO4 B 324 Software 3 B LYS 201 C LYS 67 5 1_555 B LEU 202 C LEU 68 5 1_555 B GLN 225 C GLN 91 5 1_555 B PHE 228 C PHE 94 5 1_555 B GLU 232 C GLU 98 5 1_555 B ARG 219 C ARG 85 2 1_555 U DC 7 A DC 7 2 1_555 P PRO 203 D PRO 69 3 1_555 P LYS 204 D LYS 70 3 1_555 P LYS 236 D LYS 102 3 1_555 P ARG 219 D ARG 85 2 1_555 T DC 7 B DC 7 2 20_545 P LYS 266 D LYS 132 3 1_555 P THR 267 D THR 133 3 1_555 P SER 268 D SER 134 3 1_555 P SER 189 D SER 55 3 1_555 P ARG 190 D ARG 56 3 1_555 U DC 15 A DC 15 3 20_545 B SER 189 C SER 55 3 1_555 B ARG 190 C ARG 56 3 1_555 T DC 15 B DC 15 3 1_555 P LEU 209 D LEU 75 7 1_555 P PHE 210 D PHE 76 7 1_555 P SER 211 D SER 77 7 1_555 P GLU 215 D GLU 81 7 1_555 P PHE 252 D PHE 118 7 1_555 P GLU 253 D GLU 119 7 1_555 P ALA 254 D ALA 120 7 1_555 P LYS 201 D LYS 67 4 1_555 P LEU 202 D LEU 68 4 1_555 P PHE 228 D PHE 94 4 1_555 P GLU 232 D GLU 98 4 1_555 B PRO 203 C PRO 69 3 1_555 B LYS 204 C LYS 70 3 1_555 B SER 205 C SER 71 3 1_555 197 I 2 3