0.023577
-0.001723
-0.001802
0.000000
0.023277
-0.000741
0.000000
0.000000
0.017240
0.00000
0.00000
0.00000
Kong, X.-P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
87.860
85.500
85.820
42.414
43.076
58.212
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Mol.Biol.
1545-9993
17
955
961
10.1038/nsmb.1861
20622876
Conserved structural elements in the V3 crown of HIV-1 gp120.
2010
100
1
a KOHZU double crystal monochromator with a sagittally focused second crystal. Two spherical mirrors, one will be rhodium coated. User choice of either mirror depending on the desired energy
CCD
2007-03-11
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
X4A
NSLS
0.9792
SYNCHROTRON
NSLS BEAMLINE X4A
23331.873
Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain
1
nat
polymer
24191.055
Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain
1
nat
polymer
2192.542
HIV-1 gp120 third variable region (V3) crown
1
nat
polymer
18.015
water
479
nat
water
no
no
SYDLTQPPSVSVSPGQTASISCSGDKLDDKYVSWYYQRPGQSPVLLMYQDFKRPSGIPERLSGSKSGKTATLTISGTQSL
DEGDYYCQAWDASTGVSGGGTKLTVLFGDGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKA
DSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPT
SYDLTQPPSVSVSPGQTASISCSGDKLDDKYVSWYYQRPGQSPVLLMYQDFKRPSGIPERLSGSKSGKTATLTISGTQSL
DEGDYYCQAWDASTGVSGGGTKLTVLFGDGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKA
DSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPT
L
polypeptide(L)
no
no
EVQLVESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAY
LQWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP
VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS
EVQLVESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAY
LQWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP
VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS
H
polypeptide(L)
no
no
NNTKKGIAIGPGRTLYAREK
NNTKKGIAIGPGRTLYAREK
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
9606
Homo sapiens
sample
9606
Homo sapiens
HIV-1
sample
11698
Human immunodeficiency virus type 1
NEW YORK-5 ISOLATE
1
2.13
42.14
VAPOR DIFFUSION, HANGING DROP
5.5
25% PEG 3350, 0.2 M NH4 acetate, 0.1 M Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 296K
296
software
repository
Initial release
Version format compliance
Refinement description
1
0
2010-07-14
1
1
2011-07-13
1
2
2017-11-08
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
RCSB
Y
RCSB
2010-04-18
REL
REL
HOH
water
AUTHORS STATE THAT THE FAB WERE MADE BY ENZYME DIGESTION, THEREFORE THE REAL ENDINGS OF THE CHAINS ARE UNKNOWN.
TIP
3
4
HOH
HOH
214
L
TIP
215
4
HOH
HOH
215
L
TIP
6
4
HOH
HOH
216
L
TIP
7
4
HOH
HOH
217
L
TIP
8
4
HOH
HOH
218
L
TIP
219
4
HOH
HOH
219
L
TIP
16
4
HOH
HOH
220
L
TIP
221
4
HOH
HOH
221
L
TIP
17
4
HOH
HOH
222
L
TIP
18
4
HOH
HOH
223
L
TIP
19
4
HOH
HOH
224
L
TIP
225
4
HOH
HOH
225
L
TIP
226
4
HOH
HOH
226
L
TIP
21
4
HOH
HOH
227
L
TIP
228
4
HOH
HOH
228
L
TIP
229
4
HOH
HOH
229
L
TIP
230
4
HOH
HOH
230
L
TIP
231
4
HOH
HOH
231
L
TIP
232
4
HOH
HOH
232
L
TIP
22
4
HOH
HOH
233
L
TIP
234
4
HOH
HOH
234
L
TIP
235
4
HOH
HOH
235
L
TIP
236
4
HOH
HOH
236
L
TIP
25
4
HOH
HOH
237
L
TIP
238
4
HOH
HOH
238
L
TIP
27
4
HOH
HOH
239
L
TIP
240
4
HOH
HOH
240
L
TIP
30
4
HOH
HOH
241
L
TIP
242
4
HOH
HOH
242
L
TIP
243
4
HOH
HOH
243
L
TIP
32
4
HOH
HOH
244
L
TIP
35
4
HOH
HOH
245
L
TIP
36
4
HOH
HOH
246
L
TIP
37
4
HOH
HOH
247
L
TIP
38
4
HOH
HOH
248
L
TIP
249
4
HOH
HOH
249
L
TIP
250
4
HOH
HOH
250
L
TIP
251
4
HOH
HOH
251
L
TIP
41
4
HOH
HOH
252
L
TIP
42
4
HOH
HOH
253
L
TIP
254
4
HOH
HOH
254
L
TIP
255
4
HOH
HOH
255
L
TIP
43
4
HOH
HOH
256
L
TIP
257
4
HOH
HOH
257
L
TIP
258
4
HOH
HOH
258
L
TIP
46
4
HOH
HOH
259
L
TIP
260
4
HOH
HOH
260
L
TIP
47
4
HOH
HOH
261
L
TIP
48
4
HOH
HOH
262
L
TIP
263
4
HOH
HOH
263
L
TIP
264
4
HOH
HOH
264
L
TIP
265
4
HOH
HOH
265
L
TIP
49
4
HOH
HOH
266
L
TIP
51
4
HOH
HOH
267
L
TIP
53
4
HOH
HOH
268
L
TIP
269
4
HOH
HOH
269
L
TIP
270
4
HOH
HOH
270
L
TIP
56
4
HOH
HOH
271
L
TIP
57
4
HOH
HOH
272
L
TIP
273
4
HOH
HOH
273
L
TIP
274
4
HOH
HOH
274
L
TIP
59
4
HOH
HOH
275
L
TIP
276
4
HOH
HOH
276
L
TIP
277
4
HOH
HOH
277
L
TIP
61
4
HOH
HOH
278
L
TIP
279
4
HOH
HOH
279
L
TIP
62
4
HOH
HOH
280
L
TIP
281
4
HOH
HOH
281
L
TIP
282
4
HOH
HOH
282
L
TIP
283
4
HOH
HOH
283
L
TIP
64
4
HOH
HOH
284
L
TIP
285
4
HOH
HOH
285
L
TIP
286
4
HOH
HOH
286
L
TIP
65
4
HOH
HOH
287
L
TIP
288
4
HOH
HOH
288
L
TIP
66
4
HOH
HOH
289
L
TIP
68
4
HOH
HOH
290
L
TIP
70
4
HOH
HOH
291
L
TIP
71
4
HOH
HOH
292
L
TIP
293
4
HOH
HOH
293
L
TIP
294
4
HOH
HOH
294
L
TIP
295
4
HOH
HOH
295
L
TIP
72
4
HOH
HOH
296
L
TIP
73
4
HOH
HOH
297
L
TIP
74
4
HOH
HOH
298
L
TIP
75
4
HOH
HOH
299
L
TIP
300
4
HOH
HOH
300
L
TIP
301
4
HOH
HOH
301
L
TIP
76
4
HOH
HOH
302
L
TIP
77
4
HOH
HOH
303
L
TIP
80
4
HOH
HOH
304
L
TIP
83
4
HOH
HOH
305
L
TIP
84
4
HOH
HOH
306
L
TIP
307
4
HOH
HOH
307
L
TIP
308
4
HOH
HOH
308
L
TIP
309
4
HOH
HOH
309
L
TIP
86
4
HOH
HOH
310
L
TIP
87
4
HOH
HOH
311
L
TIP
89
4
HOH
HOH
312
L
TIP
313
4
HOH
HOH
313
L
TIP
314
4
HOH
HOH
314
L
TIP
315
4
HOH
HOH
315
L
TIP
90
4
HOH
HOH
316
L
TIP
317
4
HOH
HOH
317
L
TIP
318
4
HOH
HOH
318
L
TIP
91
4
HOH
HOH
319
L
TIP
93
4
HOH
HOH
320
L
TIP
95
4
HOH
HOH
321
L
TIP
322
4
HOH
HOH
322
L
TIP
97
4
HOH
HOH
323
L
TIP
324
4
HOH
HOH
324
L
TIP
325
4
HOH
HOH
325
L
TIP
99
4
HOH
HOH
326
L
TIP
327
4
HOH
HOH
327
L
TIP
101
4
HOH
HOH
328
L
TIP
329
4
HOH
HOH
329
L
TIP
330
4
HOH
HOH
330
L
TIP
331
4
HOH
HOH
331
L
TIP
332
4
HOH
HOH
332
L
TIP
333
4
HOH
HOH
333
L
TIP
334
4
HOH
HOH
334
L
TIP
102
4
HOH
HOH
335
L
TIP
103
4
HOH
HOH
336
L
TIP
337
4
HOH
HOH
337
L
TIP
338
4
HOH
HOH
338
L
TIP
339
4
HOH
HOH
339
L
TIP
104
4
HOH
HOH
340
L
TIP
341
4
HOH
HOH
341
L
TIP
106
4
HOH
HOH
342
L
TIP
343
4
HOH
HOH
343
L
TIP
344
4
HOH
HOH
344
L
TIP
345
4
HOH
HOH
345
L
TIP
346
4
HOH
HOH
346
L
TIP
347
4
HOH
HOH
347
L
TIP
108
4
HOH
HOH
348
L
TIP
349
4
HOH
HOH
349
L
TIP
109
4
HOH
HOH
350
L
TIP
111
4
HOH
HOH
351
L
TIP
113
4
HOH
HOH
352
L
TIP
117
4
HOH
HOH
353
L
TIP
354
4
HOH
HOH
354
L
TIP
355
4
HOH
HOH
355
L
TIP
356
4
HOH
HOH
356
L
TIP
120
4
HOH
HOH
357
L
TIP
358
4
HOH
HOH
358
L
TIP
123
4
HOH
HOH
359
L
TIP
125
4
HOH
HOH
360
L
TIP
361
4
HOH
HOH
361
L
TIP
362
4
HOH
HOH
362
L
TIP
363
4
HOH
HOH
363
L
TIP
126
4
HOH
HOH
364
L
TIP
129
4
HOH
HOH
365
L
TIP
366
4
HOH
HOH
366
L
TIP
367
4
HOH
HOH
367
L
TIP
368
4
HOH
HOH
368
L
TIP
130
4
HOH
HOH
369
L
TIP
131
4
HOH
HOH
370
L
TIP
371
4
HOH
HOH
371
L
TIP
132
4
HOH
HOH
372
L
TIP
134
4
HOH
HOH
373
L
TIP
135
4
HOH
HOH
374
L
TIP
375
4
HOH
HOH
375
L
TIP
137
4
HOH
HOH
376
L
TIP
139
4
HOH
HOH
377
L
TIP
378
4
HOH
HOH
378
L
TIP
140
4
HOH
HOH
379
L
TIP
141
4
HOH
HOH
380
L
TIP
142
4
HOH
HOH
381
L
TIP
144
4
HOH
HOH
382
L
TIP
383
4
HOH
HOH
383
L
TIP
147
4
HOH
HOH
384
L
TIP
148
4
HOH
HOH
385
L
TIP
150
4
HOH
HOH
386
L
TIP
387
4
HOH
HOH
387
L
TIP
388
4
HOH
HOH
388
L
TIP
389
4
HOH
HOH
389
L
TIP
151
4
HOH
HOH
390
L
TIP
152
4
HOH
HOH
391
L
TIP
153
4
HOH
HOH
392
L
TIP
154
4
HOH
HOH
393
L
TIP
156
4
HOH
HOH
394
L
TIP
395
4
HOH
HOH
395
L
TIP
161
4
HOH
HOH
396
L
TIP
397
4
HOH
HOH
397
L
TIP
162
4
HOH
HOH
398
L
TIP
165
4
HOH
HOH
399
L
TIP
166
4
HOH
HOH
400
L
TIP
401
4
HOH
HOH
401
L
TIP
402
4
HOH
HOH
402
L
TIP
167
4
HOH
HOH
403
L
TIP
168
4
HOH
HOH
404
L
TIP
405
4
HOH
HOH
405
L
TIP
169
4
HOH
HOH
406
L
TIP
407
4
HOH
HOH
407
L
TIP
170
4
HOH
HOH
408
L
TIP
409
4
HOH
HOH
409
L
TIP
410
4
HOH
HOH
410
L
TIP
171
4
HOH
HOH
411
L
TIP
172
4
HOH
HOH
412
L
TIP
173
4
HOH
HOH
413
L
TIP
175
4
HOH
HOH
414
L
TIP
177
4
HOH
HOH
415
L
TIP
179
4
HOH
HOH
416
L
TIP
417
4
HOH
HOH
417
L
TIP
180
4
HOH
HOH
418
L
TIP
419
4
HOH
HOH
419
L
TIP
182
4
HOH
HOH
420
L
TIP
186
4
HOH
HOH
421
L
TIP
422
4
HOH
HOH
422
L
TIP
423
4
HOH
HOH
423
L
TIP
424
4
HOH
HOH
424
L
TIP
191
4
HOH
HOH
425
L
TIP
192
4
HOH
HOH
426
L
TIP
193
4
HOH
HOH
427
L
TIP
201
4
HOH
HOH
428
L
TIP
204
4
HOH
HOH
429
L
TIP
430
4
HOH
HOH
430
L
TIP
208
4
HOH
HOH
431
L
TIP
209
4
HOH
HOH
432
L
TIP
433
4
HOH
HOH
433
L
TIP
434
4
HOH
HOH
434
L
TIP
435
4
HOH
HOH
435
L
TIP
436
4
HOH
HOH
436
L
TIP
437
4
HOH
HOH
437
L
TIP
438
4
HOH
HOH
438
L
TIP
439
4
HOH
HOH
439
L
TIP
210
4
HOH
HOH
440
L
TIP
211
4
HOH
HOH
441
L
TIP
442
4
HOH
HOH
442
L
TIP
444
4
HOH
HOH
444
L
TIP
445
4
HOH
HOH
445
L
TIP
450
4
HOH
HOH
450
L
TIP
451
4
HOH
HOH
451
L
TIP
453
4
HOH
HOH
453
L
TIP
456
4
HOH
HOH
456
L
TIP
457
4
HOH
HOH
457
L
TIP
458
4
HOH
HOH
458
L
TIP
459
4
HOH
HOH
459
L
TIP
462
4
HOH
HOH
462
L
TIP
464
4
HOH
HOH
464
L
TIP
465
4
HOH
HOH
465
L
TIP
466
4
HOH
HOH
466
L
TIP
467
4
HOH
HOH
467
L
TIP
470
4
HOH
HOH
470
L
TIP
471
4
HOH
HOH
471
L
TIP
474
4
HOH
HOH
474
L
TIP
476
4
HOH
HOH
476
L
TIP
477
4
HOH
HOH
477
L
TIP
216
4
HOH
HOH
216
H
TIP
217
4
HOH
HOH
217
H
TIP
218
4
HOH
HOH
218
H
TIP
1
4
HOH
HOH
219
H
TIP
220
4
HOH
HOH
220
H
TIP
2
4
HOH
HOH
221
H
TIP
222
4
HOH
HOH
222
H
TIP
223
4
HOH
HOH
223
H
TIP
224
4
HOH
HOH
224
H
TIP
4
4
HOH
HOH
225
H
TIP
5
4
HOH
HOH
226
H
TIP
227
4
HOH
HOH
227
H
TIP
9
4
HOH
HOH
228
H
TIP
10
4
HOH
HOH
229
H
TIP
11
4
HOH
HOH
230
H
TIP
12
4
HOH
HOH
231
H
TIP
13
4
HOH
HOH
232
H
TIP
233
4
HOH
HOH
233
H
TIP
14
4
HOH
HOH
234
H
TIP
15
4
HOH
HOH
235
H
TIP
20
4
HOH
HOH
236
H
TIP
237
4
HOH
HOH
237
H
TIP
23
4
HOH
HOH
238
H
TIP
239
4
HOH
HOH
239
H
TIP
24
4
HOH
HOH
240
H
TIP
241
4
HOH
HOH
241
H
TIP
28
4
HOH
HOH
242
H
TIP
29
4
HOH
HOH
243
H
TIP
244
4
HOH
HOH
244
H
TIP
245
4
HOH
HOH
245
H
TIP
246
4
HOH
HOH
246
H
TIP
247
4
HOH
HOH
247
H
TIP
248
4
HOH
HOH
248
H
TIP
31
4
HOH
HOH
249
H
TIP
33
4
HOH
HOH
250
H
TIP
34
4
HOH
HOH
251
H
TIP
252
4
HOH
HOH
252
H
TIP
253
4
HOH
HOH
253
H
TIP
39
4
HOH
HOH
254
H
TIP
40
4
HOH
HOH
255
H
TIP
256
4
HOH
HOH
256
H
TIP
44
4
HOH
HOH
257
H
TIP
45
4
HOH
HOH
258
H
TIP
259
4
HOH
HOH
259
H
TIP
50
4
HOH
HOH
260
H
TIP
261
4
HOH
HOH
261
H
TIP
262
4
HOH
HOH
262
H
TIP
52
4
HOH
HOH
263
H
TIP
54
4
HOH
HOH
264
H
TIP
55
4
HOH
HOH
265
H
TIP
266
4
HOH
HOH
266
H
TIP
267
4
HOH
HOH
267
H
TIP
268
4
HOH
HOH
268
H
TIP
60
4
HOH
HOH
269
H
TIP
63
4
HOH
HOH
270
H
TIP
271
4
HOH
HOH
271
H
TIP
272
4
HOH
HOH
272
H
TIP
67
4
HOH
HOH
273
H
TIP
69
4
HOH
HOH
274
H
TIP
275
4
HOH
HOH
275
H
TIP
78
4
HOH
HOH
276
H
TIP
79
4
HOH
HOH
277
H
TIP
278
4
HOH
HOH
278
H
TIP
81
4
HOH
HOH
279
H
TIP
280
4
HOH
HOH
280
H
TIP
82
4
HOH
HOH
281
H
TIP
85
4
HOH
HOH
282
H
TIP
88
4
HOH
HOH
283
H
TIP
284
4
HOH
HOH
284
H
TIP
92
4
HOH
HOH
285
H
TIP
94
4
HOH
HOH
286
H
TIP
287
4
HOH
HOH
287
H
TIP
96
4
HOH
HOH
288
H
TIP
289
4
HOH
HOH
289
H
TIP
290
4
HOH
HOH
290
H
TIP
291
4
HOH
HOH
291
H
TIP
292
4
HOH
HOH
292
H
TIP
98
4
HOH
HOH
293
H
TIP
100
4
HOH
HOH
294
H
TIP
105
4
HOH
HOH
295
H
TIP
296
4
HOH
HOH
296
H
TIP
297
4
HOH
HOH
297
H
TIP
298
4
HOH
HOH
298
H
TIP
299
4
HOH
HOH
299
H
TIP
107
4
HOH
HOH
300
H
TIP
110
4
HOH
HOH
301
H
TIP
302
4
HOH
HOH
302
H
TIP
303
4
HOH
HOH
303
H
TIP
304
4
HOH
HOH
304
H
TIP
305
4
HOH
HOH
305
H
TIP
306
4
HOH
HOH
306
H
TIP
112
4
HOH
HOH
307
H
TIP
114
4
HOH
HOH
308
H
TIP
115
4
HOH
HOH
309
H
TIP
310
4
HOH
HOH
310
H
TIP
311
4
HOH
HOH
311
H
TIP
312
4
HOH
HOH
312
H
TIP
116
4
HOH
HOH
313
H
TIP
118
4
HOH
HOH
314
H
TIP
119
4
HOH
HOH
315
H
TIP
316
4
HOH
HOH
316
H
TIP
121
4
HOH
HOH
317
H
TIP
122
4
HOH
HOH
318
H
TIP
319
4
HOH
HOH
319
H
TIP
320
4
HOH
HOH
320
H
TIP
321
4
HOH
HOH
321
H
TIP
124
4
HOH
HOH
322
H
TIP
323
4
HOH
HOH
323
H
TIP
127
4
HOH
HOH
324
H
TIP
128
4
HOH
HOH
325
H
TIP
326
4
HOH
HOH
326
H
TIP
133
4
HOH
HOH
327
H
TIP
328
4
HOH
HOH
328
H
TIP
136
4
HOH
HOH
329
H
TIP
138
4
HOH
HOH
330
H
TIP
143
4
HOH
HOH
331
H
TIP
145
4
HOH
HOH
332
H
TIP
146
4
HOH
HOH
333
H
TIP
149
4
HOH
HOH
334
H
TIP
335
4
HOH
HOH
335
H
TIP
336
4
HOH
HOH
336
H
TIP
155
4
HOH
HOH
337
H
TIP
157
4
HOH
HOH
338
H
TIP
158
4
HOH
HOH
339
H
TIP
340
4
HOH
HOH
340
H
TIP
159
4
HOH
HOH
341
H
TIP
342
4
HOH
HOH
342
H
TIP
160
4
HOH
HOH
343
H
TIP
163
4
HOH
HOH
344
H
TIP
164
4
HOH
HOH
345
H
TIP
174
4
HOH
HOH
346
H
TIP
176
4
HOH
HOH
347
H
TIP
348
4
HOH
HOH
348
H
TIP
178
4
HOH
HOH
349
H
TIP
181
4
HOH
HOH
350
H
TIP
183
4
HOH
HOH
351
H
TIP
352
4
HOH
HOH
352
H
TIP
353
4
HOH
HOH
353
H
TIP
184
4
HOH
HOH
354
H
TIP
185
4
HOH
HOH
355
H
TIP
187
4
HOH
HOH
356
H
TIP
357
4
HOH
HOH
357
H
TIP
188
4
HOH
HOH
358
H
TIP
359
4
HOH
HOH
359
H
TIP
360
4
HOH
HOH
360
H
TIP
189
4
HOH
HOH
361
H
TIP
190
4
HOH
HOH
362
H
TIP
194
4
HOH
HOH
363
H
TIP
364
4
HOH
HOH
364
H
TIP
365
4
HOH
HOH
365
H
TIP
196
4
HOH
HOH
366
H
TIP
197
4
HOH
HOH
367
H
TIP
198
4
HOH
HOH
368
H
TIP
369
4
HOH
HOH
369
H
TIP
370
4
HOH
HOH
370
H
TIP
199
4
HOH
HOH
371
H
TIP
372
4
HOH
HOH
372
H
TIP
373
4
HOH
HOH
373
H
TIP
374
4
HOH
HOH
374
H
TIP
200
4
HOH
HOH
375
H
TIP
376
4
HOH
HOH
376
H
TIP
377
4
HOH
HOH
377
H
TIP
202
4
HOH
HOH
378
H
TIP
379
4
HOH
HOH
379
H
TIP
380
4
HOH
HOH
380
H
TIP
381
4
HOH
HOH
381
H
TIP
382
4
HOH
HOH
382
H
TIP
203
4
HOH
HOH
383
H
TIP
384
4
HOH
HOH
384
H
TIP
385
4
HOH
HOH
385
H
TIP
386
4
HOH
HOH
386
H
TIP
205
4
HOH
HOH
387
H
TIP
207
4
HOH
HOH
388
H
TIP
212
4
HOH
HOH
389
H
TIP
390
4
HOH
HOH
390
H
TIP
391
4
HOH
HOH
391
H
TIP
392
4
HOH
HOH
392
H
TIP
393
4
HOH
HOH
393
H
TIP
394
4
HOH
HOH
394
H
TIP
213
4
HOH
HOH
395
H
TIP
396
4
HOH
HOH
396
H
TIP
214
4
HOH
HOH
397
H
TIP
398
4
HOH
HOH
398
H
TIP
399
4
HOH
HOH
399
H
TIP
400
4
HOH
HOH
400
H
TIP
403
4
HOH
HOH
403
H
TIP
404
4
HOH
HOH
404
H
TIP
406
4
HOH
HOH
406
H
TIP
408
4
HOH
HOH
408
H
TIP
411
4
HOH
HOH
411
H
TIP
412
4
HOH
HOH
412
H
TIP
413
4
HOH
HOH
413
H
TIP
414
4
HOH
HOH
414
H
TIP
415
4
HOH
HOH
415
H
TIP
418
4
HOH
HOH
418
H
TIP
420
4
HOH
HOH
420
H
TIP
421
4
HOH
HOH
421
H
TIP
425
4
HOH
HOH
425
H
TIP
426
4
HOH
HOH
426
H
TIP
427
4
HOH
HOH
427
H
TIP
428
4
HOH
HOH
428
H
TIP
431
4
HOH
HOH
431
H
TIP
432
4
HOH
HOH
432
H
TIP
440
4
HOH
HOH
440
H
TIP
441
4
HOH
HOH
441
H
TIP
443
4
HOH
HOH
443
H
TIP
446
4
HOH
HOH
446
H
TIP
447
4
HOH
HOH
447
H
TIP
448
4
HOH
HOH
448
H
TIP
449
4
HOH
HOH
449
H
TIP
452
4
HOH
HOH
452
H
TIP
455
4
HOH
HOH
455
H
TIP
460
4
HOH
HOH
460
H
TIP
461
4
HOH
HOH
461
H
TIP
463
4
HOH
HOH
463
H
TIP
468
4
HOH
HOH
468
H
TIP
469
4
HOH
HOH
469
H
TIP
473
4
HOH
HOH
473
H
TIP
475
4
HOH
HOH
475
H
TIP
478
4
HOH
HOH
478
H
TIP
479
4
HOH
HOH
479
H
TIP
26
4
HOH
HOH
26
P
TIP
58
4
HOH
HOH
58
P
TIP
195
4
HOH
HOH
195
P
TIP
206
4
HOH
HOH
206
P
TIP
350
4
HOH
HOH
350
P
TIP
351
4
HOH
HOH
351
P
TIP
416
4
HOH
HOH
416
P
TIP
429
4
HOH
HOH
429
P
TIP
454
4
HOH
HOH
454
P
TIP
472
4
HOH
HOH
472
P
SER
1
n
1
SER
1
L
TYR
2
n
2
TYR
2
L
ASP
3
n
3
ASP
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
PRO
7
n
7
PRO
7
L
PRO
8
n
8
PRO
8
L
SER
9
n
9
SER
9
L
VAL
11
n
10
VAL
11
L
SER
12
n
11
SER
12
L
VAL
13
n
12
VAL
13
L
SER
14
n
13
SER
14
L
PRO
15
n
14
PRO
15
L
GLY
16
n
15
GLY
16
L
GLN
17
n
16
GLN
17
L
THR
18
n
17
THR
18
L
ALA
19
n
18
ALA
19
L
SER
20
n
19
SER
20
L
ILE
21
n
20
ILE
21
L
SER
22
n
21
SER
22
L
CYS
23
n
22
CYS
23
L
SER
24
n
23
SER
24
L
GLY
25
n
24
GLY
25
L
ASP
26
n
25
ASP
26
L
LYS
27
n
26
LYS
27
L
LEU
28
n
27
LEU
28
L
ASP
29
n
28
ASP
29
L
ASP
30
n
29
ASP
30
L
LYS
31
n
30
LYS
31
L
TYR
32
n
31
TYR
32
L
VAL
33
n
32
VAL
33
L
SER
34
n
33
SER
34
L
TRP
35
n
34
TRP
35
L
TYR
36
n
35
TYR
36
L
TYR
37
n
36
TYR
37
L
GLN
38
n
37
GLN
38
L
ARG
39
n
38
ARG
39
L
PRO
40
n
39
PRO
40
L
GLY
41
n
40
GLY
41
L
GLN
42
n
41
GLN
42
L
SER
43
n
42
SER
43
L
PRO
44
n
43
PRO
44
L
VAL
45
n
44
VAL
45
L
LEU
46
n
45
LEU
46
L
LEU
47
n
46
LEU
47
L
MET
48
n
47
MET
48
L
TYR
49
n
48
TYR
49
L
GLN
50
n
49
GLN
50
L
ASP
51
n
50
ASP
51
L
PHE
52
n
51
PHE
52
L
LYS
53
n
52
LYS
53
L
ARG
54
n
53
ARG
54
L
PRO
55
n
54
PRO
55
L
SER
56
n
55
SER
56
L
GLY
57
n
56
GLY
57
L
ILE
58
n
57
ILE
58
L
PRO
59
n
58
PRO
59
L
GLU
60
n
59
GLU
60
L
ARG
61
n
60
ARG
61
L
LEU
62
n
61
LEU
62
L
SER
63
n
62
SER
63
L
GLY
64
n
63
GLY
64
L
SER
65
n
64
SER
65
L
LYS
66
n
65
LYS
66
L
SER
67
n
66
SER
67
L
GLY
68
n
67
GLY
68
L
LYS
69
n
68
LYS
69
L
THR
70
n
69
THR
70
L
ALA
71
n
70
ALA
71
L
THR
72
n
71
THR
72
L
LEU
73
n
72
LEU
73
L
THR
74
n
73
THR
74
L
ILE
75
n
74
ILE
75
L
SER
76
n
75
SER
76
L
GLY
77
n
76
GLY
77
L
THR
78
n
77
THR
78
L
GLN
79
n
78
GLN
79
L
SER
80
n
79
SER
80
L
LEU
81
n
80
LEU
81
L
ASP
82
n
81
ASP
82
L
GLU
83
n
82
GLU
83
L
GLY
84
n
83
GLY
84
L
ASP
85
n
84
ASP
85
L
TYR
86
n
85
TYR
86
L
TYR
87
n
86
TYR
87
L
CYS
88
n
87
CYS
88
L
GLN
89
n
88
GLN
89
L
ALA
90
n
89
ALA
90
L
TRP
91
n
90
TRP
91
L
ASP
92
n
91
ASP
92
L
ALA
93
n
92
ALA
93
L
SER
94
n
93
SER
94
L
THR
95
n
94
THR
95
L
GLY
95
n
95
A
GLY
95
L
VAL
95
n
96
B
VAL
95
L
SER
95
n
97
C
SER
95
L
GLY
95
n
98
D
GLY
95
L
GLY
95
n
99
E
GLY
95
L
GLY
95
n
100
F
GLY
95
L
THR
96
n
101
THR
96
L
LYS
97
n
102
LYS
97
L
LEU
98
n
103
LEU
98
L
THR
99
n
104
THR
99
L
VAL
100
n
105
VAL
100
L
LEU
101
n
106
LEU
101
L
PHE
102
n
107
PHE
102
L
GLY
103
n
108
GLY
103
L
ASP
104
n
109
ASP
104
L
GLY
105
n
110
GLY
105
L
THR
106
n
111
THR
106
L
ARG
106
n
112
A
ARG
106
L
LEU
107
n
113
LEU
107
L
THR
108
n
114
THR
108
L
VAL
109
n
115
VAL
109
L
LEU
110
n
116
LEU
110
L
GLY
111
n
117
GLY
111
L
GLN
112
n
118
GLN
112
L
PRO
113
n
119
PRO
113
L
LYS
114
n
120
LYS
114
L
ALA
115
n
121
ALA
115
L
ALA
116
n
122
ALA
116
L
PRO
117
n
123
PRO
117
L
SER
118
n
124
SER
118
L
VAL
119
n
125
VAL
119
L
THR
120
n
126
THR
120
L
LEU
121
n
127
LEU
121
L
PHE
122
n
128
PHE
122
L
PRO
123
n
129
PRO
123
L
PRO
124
n
130
PRO
124
L
SER
125
n
131
SER
125
L
SER
126
n
132
SER
126
L
GLU
127
n
133
GLU
127
L
GLU
128
n
134
GLU
128
L
LEU
129
n
135
LEU
129
L
GLN
130
n
136
GLN
130
L
ALA
131
n
137
ALA
131
L
ASN
132
n
138
ASN
132
L
LYS
133
n
139
LYS
133
L
ALA
134
n
140
ALA
134
L
THR
135
n
141
THR
135
L
LEU
136
n
142
LEU
136
L
VAL
137
n
143
VAL
137
L
CYS
138
n
144
CYS
138
L
LEU
139
n
145
LEU
139
L
ILE
140
n
146
ILE
140
L
SER
141
n
147
SER
141
L
ASP
142
n
148
ASP
142
L
PHE
143
n
149
PHE
143
L
TYR
144
n
150
TYR
144
L
PRO
145
n
151
PRO
145
L
GLY
146
n
152
GLY
146
L
ALA
147
n
153
ALA
147
L
VAL
148
n
154
VAL
148
L
THR
149
n
155
THR
149
L
VAL
150
n
156
VAL
150
L
ALA
151
n
157
ALA
151
L
TRP
152
n
158
TRP
152
L
LYS
153
n
159
LYS
153
L
ALA
154
n
160
ALA
154
L
ASP
155
n
161
ASP
155
L
SER
156
n
162
SER
156
L
SER
157
n
163
SER
157
L
PRO
158
n
164
PRO
158
L
VAL
159
n
165
VAL
159
L
LYS
160
n
166
LYS
160
L
ALA
161
n
167
ALA
161
L
GLY
162
n
168
GLY
162
L
VAL
163
n
169
VAL
163
L
GLU
164
n
170
GLU
164
L
THR
165
n
171
THR
165
L
THR
166
n
172
THR
166
L
THR
167
n
173
THR
167
L
PRO
168
n
174
PRO
168
L
SER
169
n
175
SER
169
L
LYS
170
n
176
LYS
170
L
GLN
171
n
177
GLN
171
L
SER
172
n
178
SER
172
L
ASN
173
n
179
ASN
173
L
ASN
174
n
180
ASN
174
L
LYS
175
n
181
LYS
175
L
TYR
176
n
182
TYR
176
L
ALA
177
n
183
ALA
177
L
ALA
178
n
184
ALA
178
L
SER
179
n
185
SER
179
L
SER
180
n
186
SER
180
L
TYR
181
n
187
TYR
181
L
LEU
182
n
188
LEU
182
L
SER
183
n
189
SER
183
L
LEU
184
n
190
LEU
184
L
THR
185
n
191
THR
185
L
PRO
186
n
192
PRO
186
L
GLU
187
n
193
GLU
187
L
GLN
188
n
194
GLN
188
L
TRP
189
n
195
TRP
189
L
LYS
190
n
196
LYS
190
L
SER
191
n
197
SER
191
L
HIS
192
n
198
HIS
192
L
LYS
193
n
199
LYS
193
L
SER
194
n
200
SER
194
L
TYR
195
n
201
TYR
195
L
SER
196
n
202
SER
196
L
CYS
197
n
203
CYS
197
L
GLN
198
n
204
GLN
198
L
VAL
199
n
205
VAL
199
L
THR
200
n
206
THR
200
L
HIS
201
n
207
HIS
201
L
GLU
202
n
208
GLU
202
L
GLY
203
n
209
GLY
203
L
SER
204
n
210
SER
204
L
THR
205
n
211
THR
205
L
VAL
206
n
212
VAL
206
L
GLU
207
n
213
GLU
207
L
LYS
208
n
214
LYS
208
L
THR
209
n
215
THR
209
L
VAL
210
n
216
VAL
210
L
ALA
211
n
217
ALA
211
L
PRO
212
n
218
PRO
212
L
THR
213
n
219
THR
213
L
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
VAL
5
n
5
VAL
5
H
GLU
6
n
6
GLU
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
GLY
9
n
9
GLY
9
H
GLU
10
n
10
GLU
10
H
VAL
11
n
11
VAL
11
H
LYS
12
n
12
LYS
12
H
GLN
13
n
13
GLN
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
GLN
16
n
16
GLN
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
LYS
19
n
19
LYS
19
H
ILE
20
n
20
ILE
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
LYS
23
n
23
LYS
23
H
SER
24
n
24
SER
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
ASN
28
n
28
ASN
28
H
PHE
29
n
29
PHE
29
H
LEU
30
n
30
LEU
30
H
ASP
31
n
31
ASP
31
H
SER
32
n
32
SER
32
H
TRP
33
n
33
TRP
33
H
ILE
34
n
34
ILE
34
H
GLY
35
n
35
GLY
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
ARG
38
n
38
ARG
38
H
GLN
39
n
39
GLN
39
H
ILE
40
n
40
ILE
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
LYS
43
n
43
LYS
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
ILE
48
n
48
ILE
48
H
GLY
49
n
49
GLY
49
H
ILE
50
n
50
ILE
50
H
ILE
51
n
51
ILE
51
H
TYR
52
n
52
TYR
52
H
PRO
52
n
53
A
PRO
52
H
ASP
53
n
54
ASP
53
H
ASP
54
n
55
ASP
54
H
SER
55
n
56
SER
55
H
ASP
56
n
57
ASP
56
H
ALA
57
n
58
ALA
57
H
HIS
58
n
59
HIS
58
H
TYR
59
n
60
TYR
59
H
SER
60
n
61
SER
60
H
PRO
61
n
62
PRO
61
H
SER
62
n
63
SER
62
H
PHE
63
n
64
PHE
63
H
GLU
64
n
65
GLU
64
H
GLY
65
n
66
GLY
65
H
GLN
66
n
67
GLN
66
H
VAL
67
n
68
VAL
67
H
THR
68
n
69
THR
68
H
MET
69
n
70
MET
69
H
SER
70
n
71
SER
70
H
VAL
71
n
72
VAL
71
H
ASP
72
n
73
ASP
72
H
LYS
73
n
74
LYS
73
H
SER
74
n
75
SER
74
H
ILE
75
n
76
ILE
75
H
SER
76
n
77
SER
76
H
THR
77
n
78
THR
77
H
ALA
78
n
79
ALA
78
H
TYR
79
n
80
TYR
79
H
LEU
80
n
81
LEU
80
H
GLN
81
n
82
GLN
81
H
TRP
82
n
83
TRP
82
H
THR
82
n
84
A
THR
82
H
THR
82
n
85
B
THR
82
H
LEU
82
n
86
C
LEU
82
H
GLN
83
n
87
GLN
83
H
ALA
84
n
88
ALA
84
H
SER
85
n
89
SER
85
H
ASP
86
n
90
ASP
86
H
THR
87
n
91
THR
87
H
GLY
88
n
92
GLY
88
H
LYS
89
n
93
LYS
89
H
TYR
90
n
94
TYR
90
H
PHE
91
n
95
PHE
91
H
CYS
92
n
96
CYS
92
H
THR
93
n
97
THR
93
H
ARG
94
n
98
ARG
94
H
LEU
95
n
99
LEU
95
H
TYR
96
n
100
TYR
96
H
LEU
97
n
101
LEU
97
H
PHE
98
n
102
PHE
98
H
GLU
99
n
103
GLU
99
H
GLY
100
n
104
GLY
100
H
ALA
100
n
105
A
ALA
100
H
GLN
100
n
106
B
GLN
100
H
SER
100
n
107
C
SER
100
H
SER
100
n
108
D
SER
100
H
ASN
100
n
109
E
ASN
100
H
ALA
100
n
110
F
ALA
100
H
PHE
100
n
111
G
PHE
100
H
ASP
101
n
112
ASP
101
H
LEU
102
n
113
LEU
102
H
TRP
103
n
114
TRP
103
H
GLY
104
n
115
GLY
104
H
GLN
105
n
116
GLN
105
H
GLY
106
n
117
GLY
106
H
THR
107
n
118
THR
107
H
MET
108
n
119
MET
108
H
ILE
109
n
120
ILE
109
H
LEU
110
n
121
LEU
110
H
VAL
111
n
122
VAL
111
H
SER
112
n
123
SER
112
H
SER
113
n
124
SER
113
H
GLY
114
n
125
GLY
114
H
THR
115
n
126
THR
115
H
THR
116
n
127
THR
116
H
LYS
117
n
128
LYS
117
H
GLY
118
n
129
GLY
118
H
PRO
119
n
130
PRO
119
H
SER
120
n
131
SER
120
H
VAL
121
n
132
VAL
121
H
PHE
122
n
133
PHE
122
H
PRO
123
n
134
PRO
123
H
LEU
124
n
135
LEU
124
H
ALA
125
n
136
ALA
125
H
PRO
126
n
137
PRO
126
H
SER
127
n
138
SER
127
H
SER
128
n
139
SER
128
H
LYS
129
n
140
LYS
129
H
SER
130
n
141
SER
130
H
THR
131
n
142
THR
131
H
SER
132
n
143
SER
132
H
GLY
133
n
144
GLY
133
H
GLY
134
n
145
GLY
134
H
THR
135
n
146
THR
135
H
ALA
136
n
147
ALA
136
H
ALA
137
n
148
ALA
137
H
LEU
138
n
149
LEU
138
H
GLY
139
n
150
GLY
139
H
CYS
140
n
151
CYS
140
H
LEU
141
n
152
LEU
141
H
VAL
142
n
153
VAL
142
H
LYS
143
n
154
LYS
143
H
ASP
144
n
155
ASP
144
H
TYR
145
n
156
TYR
145
H
PHE
146
n
157
PHE
146
H
PRO
147
n
158
PRO
147
H
GLU
148
n
159
GLU
148
H
PRO
149
n
160
PRO
149
H
VAL
150
n
161
VAL
150
H
THR
151
n
162
THR
151
H
VAL
152
n
163
VAL
152
H
SER
153
n
164
SER
153
H
TRP
154
n
165
TRP
154
H
ASN
155
n
166
ASN
155
H
SER
156
n
167
SER
156
H
GLY
157
n
168
GLY
157
H
ALA
158
n
169
ALA
158
H
LEU
159
n
170
LEU
159
H
THR
160
n
171
THR
160
H
SER
161
n
172
SER
161
H
GLY
162
n
173
GLY
162
H
VAL
163
n
174
VAL
163
H
HIS
164
n
175
HIS
164
H
THR
165
n
176
THR
165
H
PHE
166
n
177
PHE
166
H
PRO
167
n
178
PRO
167
H
ALA
168
n
179
ALA
168
H
VAL
169
n
180
VAL
169
H
LEU
170
n
181
LEU
170
H
GLN
171
n
182
GLN
171
H
SER
172
n
183
SER
172
H
SER
173
n
184
SER
173
H
GLY
174
n
185
GLY
174
H
LEU
175
n
186
LEU
175
H
TYR
176
n
187
TYR
176
H
SER
177
n
188
SER
177
H
LEU
178
n
189
LEU
178
H
SER
179
n
190
SER
179
H
SER
180
n
191
SER
180
H
VAL
181
n
192
VAL
181
H
VAL
182
n
193
VAL
182
H
THR
183
n
194
THR
183
H
VAL
184
n
195
VAL
184
H
PRO
185
n
196
PRO
185
H
SER
186
n
197
SER
186
H
SER
187
n
198
SER
187
H
SER
188
n
199
SER
188
H
LEU
189
n
200
LEU
189
H
GLY
190
n
201
GLY
190
H
THR
191
n
202
THR
191
H
GLN
192
n
203
GLN
192
H
THR
193
n
204
THR
193
H
TYR
194
n
205
TYR
194
H
ILE
195
n
206
ILE
195
H
CYS
196
n
207
CYS
196
H
ASN
197
n
208
ASN
197
H
VAL
198
n
209
VAL
198
H
ASN
199
n
210
ASN
199
H
HIS
200
n
211
HIS
200
H
LYS
201
n
212
LYS
201
H
PRO
202
n
213
PRO
202
H
SER
203
n
214
SER
203
H
ASN
204
n
215
ASN
204
H
THR
205
n
216
THR
205
H
LYS
206
n
217
LYS
206
H
VAL
207
n
218
VAL
207
H
ASP
208
n
219
ASP
208
H
LYS
209
n
220
LYS
209
H
LYS
210
n
221
LYS
210
H
VAL
211
n
222
VAL
211
H
GLU
212
n
223
GLU
212
H
PRO
213
n
224
PRO
213
H
LYS
214
n
225
LYS
214
H
SER
215
n
226
SER
215
H
n
1
301
P
n
2
302
P
THR
303
n
3
THR
303
P
LYS
304
n
4
LYS
304
P
LYS
305
n
5
LYS
305
P
GLY
306
n
6
GLY
306
P
ILE
307
n
7
ILE
307
P
ALA
308
n
8
ALA
308
P
ILE
309
n
9
ILE
309
P
GLY
312
n
10
GLY
312
P
PRO
313
n
11
PRO
313
P
GLY
314
n
12
GLY
314
P
ARG
315
n
13
ARG
315
P
THR
316
n
14
THR
316
P
LEU
317
n
15
LEU
317
P
TYR
318
n
16
TYR
318
P
n
17
319
P
n
18
320
P
n
19
321
P
n
20
322
P
author_and_software_defined_assembly
PISA
3
trimeric
5230
-29
20690
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
N
VAL
11
A
N
VAL
10
L
O
THR
108
A
O
THR
114
L
O
LEU
107
A
O
LEU
113
L
N
GLY
84
A
N
GLY
83
L
O
TYR
87
A
O
TYR
86
L
N
TYR
36
A
N
TYR
35
L
N
TRP
35
A
N
TRP
34
L
O
LEU
47
A
O
LEU
46
L
N
VAL
11
A
N
VAL
10
L
O
THR
108
A
O
THR
114
L
O
LEU
107
A
O
LEU
113
L
N
GLY
84
A
N
GLY
83
L
N
SER
94
A
N
SER
93
L
O
LYS
97
A
O
LYS
102
L
N
CYS
23
A
N
CYS
22
L
O
ALA
71
A
O
ALA
70
L
O
THR
74
A
O
THR
73
L
N
SER
63
A
N
SER
62
L
N
PHE
122
A
N
PHE
128
L
O
VAL
137
A
O
VAL
143
L
N
ILE
140
A
N
ILE
146
L
O
ALA
178
A
O
ALA
184
L
O
TYR
181
A
O
TYR
187
L
N
GLU
164
A
N
GLU
170
L
N
PHE
122
A
N
PHE
128
L
O
VAL
137
A
O
VAL
143
L
N
ILE
140
A
N
ILE
146
L
O
ALA
178
A
O
ALA
184
L
O
ALA
177
A
O
ALA
183
L
N
SER
169
A
N
SER
175
L
O
SER
157
A
O
SER
163
L
N
ALA
154
A
N
ALA
160
L
N
ALA
151
A
N
ALA
157
L
O
GLN
198
A
O
GLN
204
L
N
HIS
201
A
N
HIS
207
L
O
SER
204
A
O
SER
210
H
N
VAL
5
B
N
VAL
5
H
O
LYS
23
B
O
LYS
23
H
N
LEU
18
B
N
LEU
18
H
O
TRP
82
B
O
TRP
83
H
O
TYR
79
B
O
TYR
80
H
N
SER
70
B
N
SER
71
H
N
LYS
12
B
N
LYS
12
H
O
LEU
110
B
O
LEU
121
H
O
ILE
109
B
O
ILE
120
H
N
GLY
88
B
N
GLY
92
H
O
THR
93
B
O
THR
97
H
N
GLY
35
B
N
GLY
35
H
N
ARG
38
B
N
ARG
38
H
O
GLU
46
B
O
GLU
46
H
N
ILE
50
B
N
ILE
50
H
O
HIS
58
B
O
HIS
59
H
N
LYS
12
B
N
LYS
12
H
O
LEU
110
B
O
LEU
121
H
O
ILE
109
B
O
ILE
120
H
N
GLY
88
B
N
GLY
92
H
N
TYR
96
B
N
TYR
100
F
H
O
ALA
100
B
O
ALA
110
H
N
PHE
122
B
N
PHE
133
H
O
LEU
141
B
O
LEU
152
H
N
LEU
138
B
N
LEU
149
H
O
VAL
182
B
O
VAL
193
H
O
VAL
181
B
O
VAL
192
H
N
HIS
164
B
N
HIS
175
H
N
PHE
122
B
N
PHE
133
H
O
LEU
141
B
O
LEU
152
H
N
LEU
138
B
N
LEU
149
H
O
VAL
182
B
O
VAL
193
H
O
SER
177
B
O
SER
188
H
N
VAL
169
B
N
VAL
180
H
N
SER
153
B
N
SER
164
H
O
ASN
197
B
O
ASN
208
H
N
VAL
198
B
N
VAL
209
H
O
VAL
207
B
O
VAL
218
P
N
ILE
307
C
N
ILE
7
P
O
LEU
317
C
O
LEU
15
1
P
ASN
301
C
ASN
1
1
Y
1
P
ASN
302
C
ASN
2
1
Y
1
P
ALA
319
C
ALA
17
1
Y
1
P
ARG
320
C
ARG
18
1
Y
1
P
GLU
321
C
GLU
19
1
Y
1
P
LYS
322
C
LYS
20
1
Y
1
L
ASP
51
74.05
-52.63
1
L
ASP
155
63.67
-115.29
1
L
ASN
174
77.63
-4.65
1
H
THR
131
36.11
57.47
1
H
ASP
144
48.70
70.21
1
H
THR
191
-133.83
-49.82
protein_rep.param
water_rep.param
58.51
14.122
2.25
-0.837
0.102
0.107
-0.087
-0.204
0.924
0.216
0.181
1.800
50
3681
36720
9.700
96.700
1.00
1.00
1
0.00
MOLECULAR REPLACEMENT
Engh & Huber
33.854
1.800
50
479
3927
0
0
3448
0.005
1.421
1.800
500
3MLR
37562
0.053
1.357
1
19.500
97.600
0.131
1.80
1.86
3701
1.569
96.30
0.100
1.86
1.94
3735
1.478
96.40
0.084
1.94
2.03
3712
1.449
96.60
0.072
2.03
2.13
3728
1.421
97.30
0.066
2.13
2.27
3737
1.378
97.20
0.060
2.27
2.44
3764
1.347
97.70
0.057
2.44
2.69
3795
1.343
98.10
0.049
2.69
3.08
3778
1.217
98.40
0.044
3.08
3.88
3804
1.082
98.90
0.039
3.88
50.00
3808
1.293
99.20
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns-online.org/
CNS
package
data extraction
PDB
help@deposit.rcsb.org
Jan. 22, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.100
data collection
ADSC
Quantum
data reduction
HKL-2000
phasing
MOLREP
Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain, HIV-1 gp120 third variable region (V3) crown
Crystal structure of anti-HIV-1 V3 Fab 2557 in complex with a NY5 V3 peptide
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
L
LYS
27
A
LYS
26
HELX_P
L
LYS
31
A
LYS
30
5
1
5
L
GLN
79
A
GLN
78
HELX_P
L
GLU
83
A
GLU
82
5
2
5
L
SER
125
A
SER
131
HELX_P
L
GLN
130
A
GLN
136
1
3
6
L
THR
185
A
THR
191
HELX_P
L
HIS
192
A
HIS
198
1
4
8
H
ASN
28
B
ASN
28
HELX_P
H
SER
32
B
SER
32
5
5
5
H
LYS
73
B
LYS
74
HELX_P
H
ILE
75
B
ILE
76
5
6
3
H
GLN
83
B
GLN
87
HELX_P
H
THR
87
B
THR
91
5
7
5
H
SER
156
B
SER
167
HELX_P
H
ALA
158
B
ALA
169
5
8
3
H
SER
187
B
SER
198
HELX_P
H
LEU
189
B
LEU
200
5
9
3
H
LYS
201
B
LYS
212
HELX_P
H
ASN
204
B
ASN
215
5
10
4
disulf
2.034
L
CYS
23
A
SG
CYS
22
1_555
L
CYS
88
A
SG
CYS
87
1_555
disulf
2.027
L
CYS
138
A
SG
CYS
144
1_555
L
CYS
197
A
SG
CYS
203
1_555
disulf
2.034
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
92
B
SG
CYS
96
1_555
disulf
2.030
H
CYS
140
B
SG
CYS
151
1_555
H
CYS
196
B
SG
CYS
207
1_555
IMMUNE SYSTEM
human monoclonal antibody, Fab, HIV-1, gp120, third variable loop, antibody-antigen interaction, IMMUNE SYSTEM
L
TYR
144
A
TYR
150
1
L
PRO
145
A
PRO
151
0.18
H
PHE
146
B
PHE
157
1
H
PRO
147
B
PRO
158
-0.22
H
GLU
148
B
GLU
159
1
H
PRO
149
B
PRO
160
-0.03
ENV_HV1N5
UNP
3
296
P12490
NNTKKGIAIGPGRTLYAREK
3MLR
PDB
1
3MLR
3MLR
PDB
2
3MLR
296
315
3MLR
301
322
P12490
P
1
1
20
1
213
3MLR
1
213
3MLR
L
2
1
219
1
215
3MLR
1
215
3MLR
H
3
1
226
5
4
3
4
4
4
4
6
4
4
4
3
2
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
SER
9
A
SER
9
L
VAL
13
A
VAL
12
L
THR
106
A
THR
111
L
VAL
109
A
VAL
115
L
GLY
84
A
GLY
83
L
THR
95
A
THR
94
L
SER
34
A
SER
33
L
GLN
38
A
GLN
37
L
VAL
45
A
VAL
44
L
MET
48
A
MET
47
L
SER
9
A
SER
9
L
VAL
13
A
VAL
12
L
THR
106
A
THR
111
L
VAL
109
A
VAL
115
L
GLY
84
A
GLY
83
L
THR
95
A
THR
94
L
THR
96
A
THR
101
L
PHE
102
A
PHE
107
L
ALA
19
A
ALA
18
L
SER
24
A
SER
23
L
THR
70
A
THR
69
L
ILE
75
A
ILE
74
L
LEU
62
A
LEU
61
L
SER
67
A
SER
66
L
SER
118
A
SER
124
L
PHE
122
A
PHE
128
L
ALA
134
A
ALA
140
L
PHE
143
A
PHE
149
L
TYR
176
A
TYR
182
L
LEU
184
A
LEU
190
L
VAL
163
A
VAL
169
L
THR
165
A
THR
171
L
SER
118
A
SER
124
L
PHE
122
A
PHE
128
L
ALA
134
A
ALA
140
L
PHE
143
A
PHE
149
L
TYR
176
A
TYR
182
L
LEU
184
A
LEU
190
L
SER
169
A
SER
175
L
LYS
170
A
LYS
176
L
SER
157
A
SER
163
L
VAL
159
A
VAL
165
L
THR
149
A
THR
155
L
ALA
154
A
ALA
160
L
TYR
195
A
TYR
201
L
HIS
201
A
HIS
207
L
SER
204
A
SER
210
L
VAL
210
A
VAL
216
H
GLN
3
B
GLN
3
H
GLU
6
B
GLU
6
H
LEU
18
B
LEU
18
H
SER
25
B
SER
25
H
THR
77
B
THR
78
H
TRP
82
B
TRP
83
H
THR
68
B
THR
69
H
ASP
72
B
ASP
73
H
GLU
10
B
GLU
10
H
LYS
12
B
LYS
12
H
THR
107
B
THR
118
H
VAL
111
B
VAL
122
H
GLY
88
B
GLY
92
H
GLU
99
B
GLU
103
H
ILE
34
B
ILE
34
H
GLN
39
B
GLN
39
H
GLU
46
B
GLU
46
H
ILE
51
B
ILE
51
H
ALA
57
B
ALA
58
H
TYR
59
B
TYR
60
H
GLU
10
B
GLU
10
H
LYS
12
B
LYS
12
H
THR
107
B
THR
118
H
VAL
111
B
VAL
122
H
GLY
88
B
GLY
92
H
GLU
99
B
GLU
103
H
SER
100
B
SER
107
H
TRP
103
B
TRP
114
C
H
SER
120
B
SER
131
H
SER
128
B
SER
139
H
THR
135
B
THR
146
H
TYR
145
B
TYR
156
H
TYR
176
B
TYR
187
H
PRO
185
B
PRO
196
H
VAL
163
B
VAL
174
H
THR
165
B
THR
176
H
SER
120
B
SER
131
H
SER
128
B
SER
139
H
THR
135
B
THR
146
H
TYR
145
B
TYR
156
H
TYR
176
B
TYR
187
H
PRO
185
B
PRO
196
H
VAL
169
B
VAL
180
H
LEU
170
B
LEU
181
H
THR
151
B
THR
162
H
TRP
154
B
TRP
165
H
ILE
195
B
ILE
206
H
HIS
200
B
HIS
211
H
THR
205
B
THR
216
H
LYS
210
B
LYS
221
P
ILE
307
C
ILE
7
P
GLY
312
C
GLY
10
P
ARG
315
C
ARG
13
P
LEU
317
C
LEU
15
1
P 1