0.022856
0.000000
0.000000
0.000000
0.006212
0.000000
0.000000
0.000000
0.007089
0.00000
0.00000
0.00000
Nicely, N.I.
Dennison, S.M.
Kelsoe, G.
Liao, H.-X.
Alam, S.M.
Haynes, B.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
43.753
160.989
141.055
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
Y
152
N
C
Y
153
N
N
Y
154
N
C
Y
155
N
C
Y
156
N
N
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
S
C
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
S
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
R
C
N
322
N
O
N
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
N
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
N
372
N
O
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
N
390
N
C
N
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
Y
149
N
sing
Y
150
N
doub
Y
151
N
doub
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
Y
259
N
doub
Y
260
N
sing
Y
261
N
sing
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
Y
328
N
doub
Y
329
N
sing
Y
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
Y
356
N
doub
Y
357
N
sing
Y
358
N
sing
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
To be Published
0353
Crystal Structure of a Non-Neutralizing HIV-1 gp41 Envelope Antibody Demonstrates Neutralization Mechanism of gp41 Antibodies
10.2210/pdb3mnw/pdb
pdb_00003mnw
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-11-16
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
22-BM
APS
1.0
SYNCHROTRON
APS BEAMLINE 22-BM
2501.724
Gp41
1
syn
polymer
24719.545
ANTI-HIV-1 ANTIBODY 13H11 LIGHT CHAIN
mouse Fv,human Fc
1
man
polymer
23521.475
ANTI-HIV-1 ANTIBODY 13H11 HEAVY CHAIN
mouse Fv,human Fc
1
man
polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
272
nat
water
no
yes
QQEKNEQELLELDKWASLWN(NH2)
QQEKNEQELLELDKWASLWNX
P
polypeptide(L)
no
no
RLDIQLTQSPSSLAMSGGQKVTMRCKSSQSLLNSRNERNYLAWYQQKPGQSPKLLVYFASIRESGVPDRFIGSGSGTDFT
LTISSVQAEDLADYFCLQHYNTPWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDN
ALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGS
RLDIQLTQSPSSLAMSGGQKVTMRCKSSQSLLNSRNERNYLAWYQQKPGQSPKLLVYFASIRESGVPDRFIGSGSGTDFT
LTISSVQAEDLADYFCLQHYNTPWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDN
ALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGS
A
polypeptide(L)
no
no
LQIQLVQSGPELKKPGETVKISCKASGYTFTDYSVHWVKQVPGKGLKWMGWINTETGEPTYADDFKGRFAFSLESSASTA
YLEIHNLKNEDTATYFCALGWLHWGLGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL
TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
LQIQLVQSGPELKKPGETVKISCKASGYTFTDYSVHWVKQVPGKGLKWMGWINTETGEPTYADDFKGRFAFSLESSASTA
YLEIHNLKNEDTATYFCALGWLHWGLGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL
TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mouse
human
sample
1
108
10090
Mus musculus
HEK293T CELL
9606
KIDNEY
Homo sapiens
PLASMID
Biological sequence
Human
human
sample
109
224
9606
Homo sapiens
HEK293T CELL
9606
KIDNEY
Homo sapiens
PLASMID
Biological sequence
mouse
human
sample
1
110
10090
Mus musculus
HEK293T CELL
9606
KIDNEY
Homo sapiens
PLASMID
Biological sequence
Human
human
sample
111
219
9606
Homo sapiens
HEK293T CELL
9606
KIDNEY
Homo sapiens
PLASMID
Biological sequence
1
2.45
49.74
VAPOR DIFFUSION
7.2
Reservoir: Qiagen Classics II screen H10 (0.2 M K Na tartrate, 20% PEG 3350). Drop: 0.6 uL protein + 0.4 uL reservoir., pH 7.2, VAPOR DIFFUSION, temperature 298K
298
entity
entity_src_gen
pdbx_entity_src_syn
struct_ref
struct_ref_seq
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Database references
Source and taxonomy
Structure summary
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-11-17
1
1
2011-07-13
1
2
2017-06-21
1
3
2023-09-06
_entity.pdbx_fragment
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_struct_ref.db_code
_struct_ref.db_name
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_seq_one_letter_code
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.seq_align_beg
_struct_ref_seq.seq_align_end
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of the non-neutralizing HIV antibody 13H11 Fab fragment
Crystal structure of the non-neutralizing HIV antibody 13H11 Fab fragment with a gp41 MPER-derived peptide bearing Ala substitutions in a helical conformation
Crystal structure of the non-neutralizing HIV antibody 13H11 Fab fragment
Crystal structure of the neutralizing HIV antibody 2F5 Fab fragment (recombinantly produced Fab) with 17 aa gp41 MPER-derived peptide
Crystal structure of the neutralizing HIV antibody 2F5 Fab fragment (recombinantly produced Fab) with 11 aa gp41 MPER-derived peptide
Crystal structure of the neutralizing HIV antibody 2F5 Fab fragment (recombinantly produced IgG) with 11 aa gp41 MPER-derived peptide
RCSB
Y
RCSB
2010-04-22
REL
REL
EDO
1,2-ETHANEDIOL
HOH
water
chemically synthesized peptide of sequence derived from the membrane proximal external region of gp41
11676
Human immunodeficiency virus 1
sample
1
21
3MNV
PDB
experimental model
EDO
1
4
EDO
EDO
231
B
HOH
42
5
HOH
HOH
42
P
HOH
65
5
HOH
HOH
65
P
HOH
75
5
HOH
HOH
75
P
HOH
137
5
HOH
HOH
137
P
HOH
161
5
HOH
HOH
161
P
HOH
185
5
HOH
HOH
185
P
HOH
211
5
HOH
HOH
211
P
HOH
233
5
HOH
HOH
233
P
HOH
234
5
HOH
HOH
234
P
HOH
217
5
HOH
HOH
217
A
HOH
218
5
HOH
HOH
218
A
HOH
2
5
HOH
HOH
219
A
HOH
6
5
HOH
HOH
220
A
HOH
9
5
HOH
HOH
221
A
HOH
10
5
HOH
HOH
222
A
HOH
223
5
HOH
HOH
223
A
HOH
224
5
HOH
HOH
224
A
HOH
225
5
HOH
HOH
225
A
HOH
14
5
HOH
HOH
226
A
HOH
18
5
HOH
HOH
227
A
HOH
19
5
HOH
HOH
228
A
HOH
24
5
HOH
HOH
229
A
HOH
26
5
HOH
HOH
230
A
HOH
28
5
HOH
HOH
231
A
HOH
29
5
HOH
HOH
232
A
HOH
32
5
HOH
HOH
233
A
HOH
33
5
HOH
HOH
234
A
HOH
235
5
HOH
HOH
235
A
HOH
34
5
HOH
HOH
236
A
HOH
38
5
HOH
HOH
237
A
HOH
41
5
HOH
HOH
238
A
HOH
239
5
HOH
HOH
239
A
HOH
240
5
HOH
HOH
240
A
HOH
43
5
HOH
HOH
241
A
HOH
44
5
HOH
HOH
242
A
HOH
45
5
HOH
HOH
243
A
HOH
51
5
HOH
HOH
244
A
HOH
245
5
HOH
HOH
245
A
HOH
55
5
HOH
HOH
246
A
HOH
57
5
HOH
HOH
247
A
HOH
248
5
HOH
HOH
248
A
HOH
58
5
HOH
HOH
249
A
HOH
60
5
HOH
HOH
250
A
HOH
62
5
HOH
HOH
251
A
HOH
252
5
HOH
HOH
252
A
HOH
253
5
HOH
HOH
253
A
HOH
254
5
HOH
HOH
254
A
HOH
255
5
HOH
HOH
255
A
HOH
63
5
HOH
HOH
256
A
HOH
257
5
HOH
HOH
257
A
HOH
67
5
HOH
HOH
258
A
HOH
259
5
HOH
HOH
259
A
HOH
71
5
HOH
HOH
260
A
HOH
261
5
HOH
HOH
261
A
HOH
262
5
HOH
HOH
262
A
HOH
72
5
HOH
HOH
263
A
HOH
264
5
HOH
HOH
264
A
HOH
265
5
HOH
HOH
265
A
HOH
73
5
HOH
HOH
266
A
HOH
74
5
HOH
HOH
267
A
HOH
268
5
HOH
HOH
268
A
HOH
269
5
HOH
HOH
269
A
HOH
76
5
HOH
HOH
270
A
HOH
78
5
HOH
HOH
271
A
HOH
272
5
HOH
HOH
272
A
HOH
83
5
HOH
HOH
273
A
HOH
86
5
HOH
HOH
274
A
HOH
87
5
HOH
HOH
275
A
HOH
88
5
HOH
HOH
276
A
HOH
90
5
HOH
HOH
277
A
HOH
91
5
HOH
HOH
278
A
HOH
93
5
HOH
HOH
279
A
HOH
94
5
HOH
HOH
280
A
HOH
101
5
HOH
HOH
281
A
HOH
103
5
HOH
HOH
282
A
HOH
105
5
HOH
HOH
283
A
HOH
108
5
HOH
HOH
284
A
HOH
110
5
HOH
HOH
285
A
HOH
113
5
HOH
HOH
286
A
HOH
119
5
HOH
HOH
287
A
HOH
121
5
HOH
HOH
288
A
HOH
122
5
HOH
HOH
289
A
HOH
123
5
HOH
HOH
290
A
HOH
124
5
HOH
HOH
291
A
HOH
126
5
HOH
HOH
292
A
HOH
127
5
HOH
HOH
293
A
HOH
130
5
HOH
HOH
294
A
HOH
132
5
HOH
HOH
295
A
HOH
133
5
HOH
HOH
296
A
HOH
134
5
HOH
HOH
297
A
HOH
135
5
HOH
HOH
298
A
HOH
136
5
HOH
HOH
299
A
HOH
138
5
HOH
HOH
300
A
HOH
139
5
HOH
HOH
301
A
HOH
141
5
HOH
HOH
302
A
HOH
144
5
HOH
HOH
303
A
HOH
149
5
HOH
HOH
304
A
HOH
150
5
HOH
HOH
305
A
HOH
151
5
HOH
HOH
306
A
HOH
153
5
HOH
HOH
307
A
HOH
155
5
HOH
HOH
308
A
HOH
156
5
HOH
HOH
309
A
HOH
157
5
HOH
HOH
310
A
HOH
158
5
HOH
HOH
311
A
HOH
159
5
HOH
HOH
312
A
HOH
163
5
HOH
HOH
313
A
HOH
165
5
HOH
HOH
314
A
HOH
166
5
HOH
HOH
315
A
HOH
167
5
HOH
HOH
316
A
HOH
171
5
HOH
HOH
317
A
HOH
174
5
HOH
HOH
318
A
HOH
175
5
HOH
HOH
319
A
HOH
178
5
HOH
HOH
320
A
HOH
179
5
HOH
HOH
321
A
HOH
180
5
HOH
HOH
322
A
HOH
186
5
HOH
HOH
323
A
HOH
188
5
HOH
HOH
324
A
HOH
189
5
HOH
HOH
325
A
HOH
190
5
HOH
HOH
326
A
HOH
192
5
HOH
HOH
327
A
HOH
193
5
HOH
HOH
328
A
HOH
194
5
HOH
HOH
329
A
HOH
196
5
HOH
HOH
330
A
HOH
197
5
HOH
HOH
331
A
HOH
198
5
HOH
HOH
332
A
HOH
199
5
HOH
HOH
333
A
HOH
200
5
HOH
HOH
334
A
HOH
203
5
HOH
HOH
335
A
HOH
204
5
HOH
HOH
336
A
HOH
206
5
HOH
HOH
337
A
HOH
208
5
HOH
HOH
338
A
HOH
210
5
HOH
HOH
339
A
HOH
213
5
HOH
HOH
340
A
HOH
214
5
HOH
HOH
341
A
HOH
97
5
HOH
HOH
97
B
HOH
98
5
HOH
HOH
98
B
HOH
99
5
HOH
HOH
99
B
HOH
100
5
HOH
HOH
100
B
HOH
128
5
HOH
HOH
128
B
HOH
160
5
HOH
HOH
160
B
HOH
170
5
HOH
HOH
170
B
HOH
181
5
HOH
HOH
181
B
HOH
201
5
HOH
HOH
201
B
HOH
202
5
HOH
HOH
202
B
HOH
232
5
HOH
HOH
232
B
HOH
1
5
HOH
HOH
233
B
HOH
3
5
HOH
HOH
234
B
HOH
4
5
HOH
HOH
235
B
HOH
236
5
HOH
HOH
236
B
HOH
237
5
HOH
HOH
237
B
HOH
238
5
HOH
HOH
238
B
HOH
5
5
HOH
HOH
239
B
HOH
7
5
HOH
HOH
240
B
HOH
241
5
HOH
HOH
241
B
HOH
242
5
HOH
HOH
242
B
HOH
243
5
HOH
HOH
243
B
HOH
244
5
HOH
HOH
244
B
HOH
8
5
HOH
HOH
245
B
HOH
246
5
HOH
HOH
246
B
HOH
247
5
HOH
HOH
247
B
HOH
11
5
HOH
HOH
248
B
HOH
249
5
HOH
HOH
249
B
HOH
250
5
HOH
HOH
250
B
HOH
251
5
HOH
HOH
251
B
HOH
12
5
HOH
HOH
252
B
HOH
13
5
HOH
HOH
253
B
HOH
15
5
HOH
HOH
254
B
HOH
16
5
HOH
HOH
255
B
HOH
256
5
HOH
HOH
256
B
HOH
17
5
HOH
HOH
257
B
HOH
258
5
HOH
HOH
258
B
HOH
20
5
HOH
HOH
259
B
HOH
260
5
HOH
HOH
260
B
HOH
21
5
HOH
HOH
261
B
HOH
22
5
HOH
HOH
262
B
HOH
263
5
HOH
HOH
263
B
HOH
23
5
HOH
HOH
264
B
HOH
25
5
HOH
HOH
265
B
HOH
266
5
HOH
HOH
266
B
HOH
267
5
HOH
HOH
267
B
HOH
27
5
HOH
HOH
268
B
HOH
30
5
HOH
HOH
269
B
HOH
270
5
HOH
HOH
270
B
HOH
271
5
HOH
HOH
271
B
HOH
31
5
HOH
HOH
272
B
HOH
35
5
HOH
HOH
273
B
HOH
36
5
HOH
HOH
274
B
HOH
37
5
HOH
HOH
275
B
HOH
39
5
HOH
HOH
276
B
HOH
40
5
HOH
HOH
277
B
HOH
46
5
HOH
HOH
278
B
HOH
47
5
HOH
HOH
279
B
HOH
48
5
HOH
HOH
280
B
HOH
49
5
HOH
HOH
281
B
HOH
50
5
HOH
HOH
282
B
HOH
52
5
HOH
HOH
283
B
HOH
53
5
HOH
HOH
284
B
HOH
54
5
HOH
HOH
285
B
HOH
56
5
HOH
HOH
286
B
HOH
59
5
HOH
HOH
287
B
HOH
61
5
HOH
HOH
288
B
HOH
64
5
HOH
HOH
289
B
HOH
66
5
HOH
HOH
290
B
HOH
68
5
HOH
HOH
291
B
HOH
69
5
HOH
HOH
292
B
HOH
70
5
HOH
HOH
293
B
HOH
77
5
HOH
HOH
294
B
HOH
79
5
HOH
HOH
295
B
HOH
81
5
HOH
HOH
297
B
HOH
82
5
HOH
HOH
298
B
HOH
84
5
HOH
HOH
299
B
HOH
85
5
HOH
HOH
300
B
HOH
89
5
HOH
HOH
301
B
HOH
92
5
HOH
HOH
302
B
HOH
95
5
HOH
HOH
303
B
HOH
96
5
HOH
HOH
304
B
HOH
102
5
HOH
HOH
305
B
HOH
104
5
HOH
HOH
306
B
HOH
106
5
HOH
HOH
307
B
HOH
107
5
HOH
HOH
308
B
HOH
109
5
HOH
HOH
309
B
HOH
111
5
HOH
HOH
310
B
HOH
112
5
HOH
HOH
311
B
HOH
114
5
HOH
HOH
312
B
HOH
115
5
HOH
HOH
313
B
HOH
116
5
HOH
HOH
314
B
HOH
117
5
HOH
HOH
315
B
HOH
118
5
HOH
HOH
316
B
HOH
120
5
HOH
HOH
317
B
HOH
125
5
HOH
HOH
318
B
HOH
129
5
HOH
HOH
319
B
HOH
131
5
HOH
HOH
320
B
HOH
140
5
HOH
HOH
321
B
HOH
142
5
HOH
HOH
322
B
HOH
145
5
HOH
HOH
324
B
HOH
146
5
HOH
HOH
325
B
HOH
147
5
HOH
HOH
326
B
HOH
148
5
HOH
HOH
327
B
HOH
152
5
HOH
HOH
328
B
HOH
154
5
HOH
HOH
329
B
HOH
162
5
HOH
HOH
330
B
HOH
164
5
HOH
HOH
331
B
HOH
168
5
HOH
HOH
332
B
HOH
169
5
HOH
HOH
333
B
HOH
172
5
HOH
HOH
334
B
HOH
173
5
HOH
HOH
335
B
HOH
176
5
HOH
HOH
336
B
HOH
177
5
HOH
HOH
337
B
HOH
182
5
HOH
HOH
338
B
HOH
183
5
HOH
HOH
339
B
HOH
184
5
HOH
HOH
340
B
HOH
187
5
HOH
HOH
341
B
HOH
191
5
HOH
HOH
342
B
HOH
195
5
HOH
HOH
343
B
HOH
205
5
HOH
HOH
344
B
HOH
207
5
HOH
HOH
345
B
HOH
209
5
HOH
HOH
346
B
HOH
212
5
HOH
HOH
347
B
HOH
215
5
HOH
HOH
348
B
HOH
216
5
HOH
HOH
349
B
HOH
219
5
HOH
HOH
350
B
HOH
220
5
HOH
HOH
351
B
HOH
221
5
HOH
HOH
352
B
HOH
222
5
HOH
HOH
353
B
HOH
226
5
HOH
HOH
354
B
HOH
227
5
HOH
HOH
355
B
HOH
228
5
HOH
HOH
356
B
HOH
229
5
HOH
HOH
357
B
HOH
230
5
HOH
HOH
358
B
HOH
231
5
HOH
HOH
359
B
HOH
80
5
HOH
HOH
360
B
HOH
143
5
HOH
HOH
361
B
n
1
652
P
GLN
653
n
2
GLN
653
P
GLU
654
n
3
GLU
654
P
LYS
655
n
4
LYS
655
P
ASN
656
n
5
ASN
656
P
GLU
657
n
6
GLU
657
P
GLN
658
n
7
GLN
658
P
GLU
659
n
8
GLU
659
P
LEU
660
n
9
LEU
660
P
LEU
661
n
10
LEU
661
P
GLU
662
n
11
GLU
662
P
LEU
663
n
12
LEU
663
P
ASP
664
n
13
ASP
664
P
LYS
665
n
14
LYS
665
P
TRP
666
n
15
TRP
666
P
ALA
667
n
16
ALA
667
P
SER
668
n
17
SER
668
P
LEU
669
n
18
LEU
669
P
TRP
670
n
19
TRP
670
P
ASN
671
n
20
ASN
671
P
NH2
672
n
21
NH2
672
P
n
1
-1
A
LEU
0
n
2
LEU
0
A
ASP
1
n
3
ASP
1
A
ILE
2
n
4
ILE
2
A
GLN
3
n
5
GLN
3
A
LEU
4
n
6
LEU
4
A
THR
5
n
7
THR
5
A
GLN
6
n
8
GLN
6
A
SER
7
n
9
SER
7
A
PRO
8
n
10
PRO
8
A
SER
9
n
11
SER
9
A
SER
10
n
12
SER
10
A
LEU
11
n
13
LEU
11
A
ALA
12
n
14
ALA
12
A
MET
13
n
15
MET
13
A
n
16
14
A
n
17
15
A
GLY
16
n
18
GLY
16
A
GLN
17
n
19
GLN
17
A
LYS
18
n
20
LYS
18
A
VAL
19
n
21
VAL
19
A
THR
20
n
22
THR
20
A
MET
21
n
23
MET
21
A
ARG
22
n
24
ARG
22
A
CYS
23
n
25
CYS
23
A
LYS
24
n
26
LYS
24
A
SER
25
n
27
SER
25
A
SER
26
n
28
SER
26
A
GLN
27
n
29
GLN
27
A
SER
28
n
30
SER
28
A
LEU
29
n
31
LEU
29
A
LEU
30
n
32
LEU
30
A
ASN
30
n
33
A
ASN
30
A
SER
30
n
34
B
SER
30
A
ARG
30
n
35
C
ARG
30
A
ASN
30
n
36
D
ASN
30
A
GLU
30
n
37
E
GLU
30
A
ARG
30
n
38
F
ARG
30
A
ASN
31
n
39
ASN
31
A
TYR
32
n
40
TYR
32
A
LEU
33
n
41
LEU
33
A
ALA
34
n
42
ALA
34
A
TRP
35
n
43
TRP
35
A
TYR
36
n
44
TYR
36
A
GLN
37
n
45
GLN
37
A
GLN
38
n
46
GLN
38
A
LYS
39
n
47
LYS
39
A
PRO
40
n
48
PRO
40
A
GLY
41
n
49
GLY
41
A
GLN
42
n
50
GLN
42
A
SER
43
n
51
SER
43
A
PRO
44
n
52
PRO
44
A
LYS
45
n
53
LYS
45
A
LEU
46
n
54
LEU
46
A
LEU
47
n
55
LEU
47
A
VAL
48
n
56
VAL
48
A
TYR
49
n
57
TYR
49
A
PHE
50
n
58
PHE
50
A
ALA
51
n
59
ALA
51
A
SER
52
n
60
SER
52
A
ILE
53
n
61
ILE
53
A
ARG
54
n
62
ARG
54
A
GLU
55
n
63
GLU
55
A
SER
56
n
64
SER
56
A
GLY
57
n
65
GLY
57
A
VAL
58
n
66
VAL
58
A
PRO
59
n
67
PRO
59
A
ASP
60
n
68
ASP
60
A
ARG
61
n
69
ARG
61
A
PHE
62
n
70
PHE
62
A
ILE
63
n
71
ILE
63
A
GLY
64
n
72
GLY
64
A
SER
65
n
73
SER
65
A
GLY
66
n
74
GLY
66
A
SER
67
n
75
SER
67
A
GLY
68
n
76
GLY
68
A
THR
69
n
77
THR
69
A
ASP
70
n
78
ASP
70
A
PHE
71
n
79
PHE
71
A
THR
72
n
80
THR
72
A
LEU
73
n
81
LEU
73
A
THR
74
n
82
THR
74
A
ILE
75
n
83
ILE
75
A
SER
76
n
84
SER
76
A
SER
77
n
85
SER
77
A
VAL
78
n
86
VAL
78
A
GLN
79
n
87
GLN
79
A
ALA
80
n
88
ALA
80
A
GLU
81
n
89
GLU
81
A
ASP
82
n
90
ASP
82
A
LEU
83
n
91
LEU
83
A
ALA
84
n
92
ALA
84
A
ASP
85
n
93
ASP
85
A
TYR
86
n
94
TYR
86
A
PHE
87
n
95
PHE
87
A
CYS
88
n
96
CYS
88
A
LEU
89
n
97
LEU
89
A
GLN
90
n
98
GLN
90
A
HIS
91
n
99
HIS
91
A
TYR
92
n
100
TYR
92
A
ASN
93
n
101
ASN
93
A
THR
94
n
102
THR
94
A
PRO
95
n
103
PRO
95
A
TRP
96
n
104
TRP
96
A
THR
97
n
105
THR
97
A
PHE
98
n
106
PHE
98
A
GLY
99
n
107
GLY
99
A
GLY
100
n
108
GLY
100
A
GLY
101
n
109
GLY
101
A
THR
102
n
110
THR
102
A
LYS
103
n
111
LYS
103
A
LEU
104
n
112
LEU
104
A
GLU
105
n
113
GLU
105
A
ILE
106
n
114
ILE
106
A
LYS
107
n
115
LYS
107
A
ARG
108
n
116
ARG
108
A
THR
109
n
117
THR
109
A
VAL
110
n
118
VAL
110
A
ALA
111
n
119
ALA
111
A
ALA
112
n
120
ALA
112
A
PRO
113
n
121
PRO
113
A
SER
114
n
122
SER
114
A
VAL
115
n
123
VAL
115
A
PHE
116
n
124
PHE
116
A
ILE
117
n
125
ILE
117
A
PHE
118
n
126
PHE
118
A
PRO
119
n
127
PRO
119
A
PRO
120
n
128
PRO
120
A
SER
121
n
129
SER
121
A
ASP
122
n
130
ASP
122
A
GLU
123
n
131
GLU
123
A
GLN
124
n
132
GLN
124
A
LEU
125
n
133
LEU
125
A
LYS
126
n
134
LYS
126
A
SER
127
n
135
SER
127
A
GLY
128
n
136
GLY
128
A
THR
129
n
137
THR
129
A
ALA
130
n
138
ALA
130
A
SER
131
n
139
SER
131
A
VAL
132
n
140
VAL
132
A
VAL
133
n
141
VAL
133
A
CYS
134
n
142
CYS
134
A
LEU
135
n
143
LEU
135
A
LEU
136
n
144
LEU
136
A
ASN
137
n
145
ASN
137
A
ASN
138
n
146
ASN
138
A
PHE
139
n
147
PHE
139
A
TYR
140
n
148
TYR
140
A
PRO
141
n
149
PRO
141
A
ARG
142
n
150
ARG
142
A
GLU
143
n
151
GLU
143
A
ALA
144
n
152
ALA
144
A
LYS
145
n
153
LYS
145
A
VAL
146
n
154
VAL
146
A
GLN
147
n
155
GLN
147
A
TRP
148
n
156
TRP
148
A
LYS
149
n
157
LYS
149
A
VAL
150
n
158
VAL
150
A
ASP
151
n
159
ASP
151
A
ASN
152
n
160
ASN
152
A
ALA
153
n
161
ALA
153
A
LEU
154
n
162
LEU
154
A
GLN
155
n
163
GLN
155
A
SER
156
n
164
SER
156
A
GLY
157
n
165
GLY
157
A
ASN
158
n
166
ASN
158
A
SER
159
n
167
SER
159
A
GLN
160
n
168
GLN
160
A
GLU
161
n
169
GLU
161
A
SER
162
n
170
SER
162
A
VAL
163
n
171
VAL
163
A
THR
164
n
172
THR
164
A
GLU
165
n
173
GLU
165
A
GLN
166
n
174
GLN
166
A
ASP
167
n
175
ASP
167
A
SER
168
n
176
SER
168
A
LYS
169
n
177
LYS
169
A
ASP
170
n
178
ASP
170
A
SER
171
n
179
SER
171
A
THR
172
n
180
THR
172
A
TYR
173
n
181
TYR
173
A
SER
174
n
182
SER
174
A
LEU
175
n
183
LEU
175
A
SER
176
n
184
SER
176
A
SER
177
n
185
SER
177
A
THR
178
n
186
THR
178
A
LEU
179
n
187
LEU
179
A
THR
180
n
188
THR
180
A
LEU
181
n
189
LEU
181
A
SER
182
n
190
SER
182
A
LYS
183
n
191
LYS
183
A
ALA
184
n
192
ALA
184
A
ASP
185
n
193
ASP
185
A
TYR
186
n
194
TYR
186
A
GLU
187
n
195
GLU
187
A
LYS
188
n
196
LYS
188
A
HIS
189
n
197
HIS
189
A
LYS
190
n
198
LYS
190
A
VAL
191
n
199
VAL
191
A
TYR
192
n
200
TYR
192
A
ALA
193
n
201
ALA
193
A
CYS
194
n
202
CYS
194
A
GLU
195
n
203
GLU
195
A
VAL
196
n
204
VAL
196
A
THR
197
n
205
THR
197
A
HIS
198
n
206
HIS
198
A
GLN
199
n
207
GLN
199
A
GLY
200
n
208
GLY
200
A
LEU
201
n
209
LEU
201
A
SER
202
n
210
SER
202
A
SER
203
n
211
SER
203
A
PRO
204
n
212
PRO
204
A
VAL
205
n
213
VAL
205
A
THR
206
n
214
THR
206
A
LYS
207
n
215
LYS
207
A
SER
208
n
216
SER
208
A
PHE
209
n
217
PHE
209
A
ASN
210
n
218
ASN
210
A
ARG
211
n
219
ARG
211
A
n
220
212
A
n
221
213
A
n
222
214
A
n
223
215
A
n
224
216
A
n
1
0
B
GLN
1
n
2
GLN
1
B
ILE
2
n
3
ILE
2
B
GLN
3
n
4
GLN
3
B
LEU
4
n
5
LEU
4
B
VAL
5
n
6
VAL
5
B
GLN
6
n
7
GLN
6
B
SER
7
n
8
SER
7
B
GLY
8
n
9
GLY
8
B
PRO
9
n
10
PRO
9
B
GLU
10
n
11
GLU
10
B
LEU
11
n
12
LEU
11
B
LYS
12
n
13
LYS
12
B
LYS
13
n
14
LYS
13
B
PRO
14
n
15
PRO
14
B
GLY
15
n
16
GLY
15
B
GLU
16
n
17
GLU
16
B
THR
17
n
18
THR
17
B
VAL
18
n
19
VAL
18
B
LYS
19
n
20
LYS
19
B
ILE
20
n
21
ILE
20
B
SER
21
n
22
SER
21
B
CYS
22
n
23
CYS
22
B
LYS
23
n
24
LYS
23
B
ALA
24
n
25
ALA
24
B
SER
25
n
26
SER
25
B
GLY
26
n
27
GLY
26
B
TYR
27
n
28
TYR
27
B
THR
28
n
29
THR
28
B
PHE
29
n
30
PHE
29
B
THR
30
n
31
THR
30
B
ASP
31
n
32
ASP
31
B
TYR
32
n
33
TYR
32
B
SER
33
n
34
SER
33
B
VAL
34
n
35
VAL
34
B
HIS
35
n
36
HIS
35
B
TRP
36
n
37
TRP
36
B
VAL
37
n
38
VAL
37
B
LYS
38
n
39
LYS
38
B
GLN
39
n
40
GLN
39
B
VAL
40
n
41
VAL
40
B
n
42
41
B
n
43
42
B
LYS
43
n
44
LYS
43
B
GLY
44
n
45
GLY
44
B
LEU
45
n
46
LEU
45
B
LYS
46
n
47
LYS
46
B
TRP
47
n
48
TRP
47
B
MET
48
n
49
MET
48
B
GLY
49
n
50
GLY
49
B
TRP
50
n
51
TRP
50
B
ILE
51
n
52
ILE
51
B
ASN
52
n
53
ASN
52
B
THR
52
n
54
A
THR
52
B
GLU
53
n
55
GLU
53
B
THR
54
n
56
THR
54
B
GLY
55
n
57
GLY
55
B
GLU
56
n
58
GLU
56
B
PRO
57
n
59
PRO
57
B
THR
58
n
60
THR
58
B
TYR
59
n
61
TYR
59
B
ALA
60
n
62
ALA
60
B
ASP
61
n
63
ASP
61
B
ASP
62
n
64
ASP
62
B
PHE
63
n
65
PHE
63
B
LYS
64
n
66
LYS
64
B
GLY
65
n
67
GLY
65
B
ARG
66
n
68
ARG
66
B
PHE
67
n
69
PHE
67
B
ALA
68
n
70
ALA
68
B
PHE
69
n
71
PHE
69
B
SER
70
n
72
SER
70
B
LEU
71
n
73
LEU
71
B
GLU
72
n
74
GLU
72
B
SER
73
n
75
SER
73
B
SER
74
n
76
SER
74
B
ALA
75
n
77
ALA
75
B
SER
76
n
78
SER
76
B
THR
77
n
79
THR
77
B
ALA
78
n
80
ALA
78
B
TYR
79
n
81
TYR
79
B
LEU
80
n
82
LEU
80
B
GLU
81
n
83
GLU
81
B
ILE
82
n
84
ILE
82
B
HIS
82
n
85
A
HIS
82
B
ASN
82
n
86
B
ASN
82
B
LEU
82
n
87
C
LEU
82
B
LYS
83
n
88
LYS
83
B
ASN
84
n
89
ASN
84
B
GLU
85
n
90
GLU
85
B
ASP
86
n
91
ASP
86
B
THR
87
n
92
THR
87
B
ALA
88
n
93
ALA
88
B
THR
89
n
94
THR
89
B
TYR
90
n
95
TYR
90
B
PHE
91
n
96
PHE
91
B
CYS
92
n
97
CYS
92
B
ALA
93
n
98
ALA
93
B
LEU
94
n
99
LEU
94
B
GLY
95
n
100
GLY
95
B
TRP
96
n
101
TRP
96
B
LEU
101
n
102
LEU
101
B
HIS
102
n
103
HIS
102
B
TRP
103
n
104
TRP
103
B
GLY
104
n
105
GLY
104
B
LEU
105
n
106
LEU
105
B
GLY
106
n
107
GLY
106
B
THR
107
n
108
THR
107
B
THR
108
n
109
THR
108
B
LEU
109
n
110
LEU
109
B
THR
110
n
111
THR
110
B
VAL
111
n
112
VAL
111
B
SER
112
n
113
SER
112
B
SER
113
n
114
SER
113
B
ALA
114
n
115
ALA
114
B
SER
115
n
116
SER
115
B
THR
116
n
117
THR
116
B
LYS
117
n
118
LYS
117
B
GLY
118
n
119
GLY
118
B
PRO
119
n
120
PRO
119
B
SER
120
n
121
SER
120
B
VAL
121
n
122
VAL
121
B
PHE
122
n
123
PHE
122
B
PRO
123
n
124
PRO
123
B
LEU
124
n
125
LEU
124
B
ALA
125
n
126
ALA
125
B
PRO
126
n
127
PRO
126
B
n
128
129
B
n
129
130
B
n
130
131
B
n
131
132
B
n
132
133
B
n
133
134
B
n
134
135
B
GLY
136
n
135
GLY
136
B
THR
137
n
136
THR
137
B
ALA
138
n
137
ALA
138
B
ALA
139
n
138
ALA
139
B
LEU
140
n
139
LEU
140
B
GLY
141
n
140
GLY
141
B
CYS
142
n
141
CYS
142
B
LEU
143
n
142
LEU
143
B
VAL
144
n
143
VAL
144
B
LYS
145
n
144
LYS
145
B
ASP
146
n
145
ASP
146
B
TYR
147
n
146
TYR
147
B
PHE
148
n
147
PHE
148
B
PRO
149
n
148
PRO
149
B
GLU
150
n
149
GLU
150
B
PRO
151
n
150
PRO
151
B
VAL
152
n
151
VAL
152
B
THR
153
n
152
THR
153
B
VAL
154
n
153
VAL
154
B
SER
156
n
154
SER
156
B
TRP
157
n
155
TRP
157
B
ASN
162
n
156
ASN
162
B
SER
163
n
157
SER
163
B
GLY
164
n
158
GLY
164
B
ALA
165
n
159
ALA
165
B
LEU
166
n
160
LEU
166
B
THR
167
n
161
THR
167
B
SER
168
n
162
SER
168
B
GLY
169
n
163
GLY
169
B
VAL
171
n
164
VAL
171
B
HIS
172
n
165
HIS
172
B
THR
173
n
166
THR
173
B
PHE
174
n
167
PHE
174
B
PRO
175
n
168
PRO
175
B
ALA
176
n
169
ALA
176
B
VAL
177
n
170
VAL
177
B
LEU
178
n
171
LEU
178
B
GLN
179
n
172
GLN
179
B
SER
180
n
173
SER
180
B
SER
182
n
174
SER
182
B
GLY
183
n
175
GLY
183
B
LEU
184
n
176
LEU
184
B
TYR
185
n
177
TYR
185
B
SER
186
n
178
SER
186
B
LEU
187
n
179
LEU
187
B
SER
188
n
180
SER
188
B
SER
189
n
181
SER
189
B
VAL
190
n
182
VAL
190
B
VAL
191
n
183
VAL
191
B
THR
192
n
184
THR
192
B
VAL
193
n
185
VAL
193
B
PRO
194
n
186
PRO
194
B
SER
195
n
187
SER
195
B
SER
196
n
188
SER
196
B
SER
197
n
189
SER
197
B
LEU
198
n
190
LEU
198
B
GLY
199
n
191
GLY
199
B
THR
200
n
192
THR
200
B
GLN
203
n
193
GLN
203
B
THR
205
n
194
THR
205
B
TYR
206
n
195
TYR
206
B
ILE
207
n
196
ILE
207
B
CYS
208
n
197
CYS
208
B
ASN
209
n
198
ASN
209
B
VAL
210
n
199
VAL
210
B
ASN
211
n
200
ASN
211
B
HIS
212
n
201
HIS
212
B
LYS
213
n
202
LYS
213
B
PRO
214
n
203
PRO
214
B
SER
215
n
204
SER
215
B
ASN
216
n
205
ASN
216
B
THR
217
n
206
THR
217
B
LYS
218
n
207
LYS
218
B
VAL
219
n
208
VAL
219
B
ASP
220
n
209
ASP
220
B
LYS
221
n
210
LYS
221
B
ARG
222
n
211
ARG
222
B
VAL
223
n
212
VAL
223
B
GLU
224
n
213
GLU
224
B
PRO
225
n
214
PRO
225
B
n
215
226
B
n
216
227
B
n
217
228
B
n
218
229
B
n
219
230
B
2.9509
2.5796
-2.8311
8.4988
-4.4135
3.0356
0.4647
-0.4188
0.4830
0.7705
-0.2822
0.6938
-0.6522
0.4817
-0.2082
0.1820
0.0485
0.0074
0.2140
-0.0102
0.1845
refined
-31.3641
-18.2377
-6.1504
X-RAY DIFFRACTION
3.5252
-0.3185
2.0263
0.1283
-0.7052
5.4626
0.2857
-0.2672
-0.6871
0.2241
0.1499
0.1759
0.4448
-0.1605
-0.3043
0.1819
-0.0427
-0.0044
0.2041
0.0235
0.2147
refined
-34.3417
-29.5824
-5.4506
X-RAY DIFFRACTION
3.3010
1.2810
-1.3568
0.8103
-0.0031
1.3393
-0.2014
0.7238
0.7761
-0.0859
0.0073
0.2619
-0.1387
-0.4296
0.2098
0.1579
0.0468
0.0144
0.2448
0.0617
0.2783
refined
-36.2359
-14.4024
-21.3947
X-RAY DIFFRACTION
0.9626
0.4662
-0.3849
1.1443
0.0898
1.6201
-0.1116
0.0504
-0.1831
-0.0010
0.1397
0.1608
0.1225
-0.0894
-0.0222
0.0904
-0.0181
0.0199
0.0828
0.0251
0.1449
refined
-27.9594
-26.6879
-16.3553
X-RAY DIFFRACTION
0.5103
0.2337
0.4553
2.6890
-0.0628
1.3690
-0.0829
-0.0374
-0.0019
0.4789
0.0396
-0.2444
-0.0956
-0.1740
0.1680
0.0924
-0.0079
0.0084
0.0819
0.0114
0.1727
refined
-26.1034
-23.3968
-9.7775
X-RAY DIFFRACTION
1.3398
0.2916
-0.3489
0.2460
-0.4907
0.8145
0.0649
-0.3796
-0.0955
0.0551
0.1372
0.0803
-0.1228
0.0250
-0.1720
0.1549
-0.0165
0.0187
0.2882
0.0178
0.2008
refined
-15.4002
-22.2222
20.7969
X-RAY DIFFRACTION
1.4452
0.9299
0.6986
0.8265
0.5344
0.3834
0.2168
-0.1367
0.8796
-0.1029
-0.3687
0.1436
-0.3549
-0.3039
0.1020
0.3174
-0.0275
0.0196
0.3808
-0.0003
0.4630
refined
-25.8008
-18.5623
15.2752
X-RAY DIFFRACTION
0.7736
0.3981
1.1996
1.0347
-0.6581
3.7928
0.0725
-0.5330
0.7133
0.2111
0.2120
0.4499
-0.1472
-0.7687
-0.0581
0.2421
0.0050
0.1355
0.4265
-0.0924
0.3589
refined
-19.4647
-8.9297
22.4361
X-RAY DIFFRACTION
1.4202
-0.3185
-0.3433
2.3637
1.0054
1.3442
-0.0053
-0.1234
-0.1109
-0.0944
0.2553
-0.2072
-0.0494
0.2591
-0.1505
0.1834
-0.0305
-0.0030
0.2486
0.0278
0.1661
refined
-15.6259
-21.5474
15.2775
X-RAY DIFFRACTION
0.5378
0.0106
0.9414
1.2074
-0.0803
1.3833
0.0513
-1.2291
0.2247
0.1390
-0.0559
0.2787
-0.1548
-0.5698
0.2746
0.1836
0.0077
0.1216
0.4988
-0.0959
0.2876
refined
-20.4158
-15.2866
27.9753
X-RAY DIFFRACTION
1.4049
-1.2062
-0.4626
4.3753
0.4400
2.5188
-0.4076
-0.2583
-0.4075
-0.0659
0.4490
-0.1837
0.0563
0.4992
0.1447
0.2371
-0.0247
0.0476
0.1293
-0.0048
0.2584
refined
-9.8166
-25.7944
-22.8464
X-RAY DIFFRACTION
0.5531
-0.2181
0.3228
0.4839
0.2812
0.8650
0.0397
0.1695
-0.0729
0.0656
0.0378
-0.0258
0.1437
0.0333
-0.0176
0.0775
-0.0345
0.0224
0.1076
-0.0331
0.1128
refined
-7.4580
-13.9752
-17.6538
X-RAY DIFFRACTION
1.5065
0.5257
1.4983
1.3980
0.2943
2.9614
-0.1737
-0.0994
0.3924
-0.1791
0.0230
0.2994
-0.2564
-0.1936
0.1384
0.1206
-0.0071
-0.0008
0.1362
0.0075
0.2000
refined
-16.1076
-8.8151
-20.0451
X-RAY DIFFRACTION
1.3595
1.3816
-0.7983
5.3586
2.4783
3.2667
0.0732
0.0875
1.0495
0.2976
0.1833
0.4490
0.0535
0.3629
-0.1336
0.2581
0.0100
0.0348
0.2057
-0.1157
0.3647
refined
-18.0301
-1.7131
-13.7930
X-RAY DIFFRACTION
1.9987
-1.0171
-1.3178
0.8701
1.7705
4.7164
0.1432
0.2116
0.0705
-0.3511
-0.2698
-0.1607
-0.7813
0.1513
-0.0229
0.1839
-0.0406
0.0111
0.1699
-0.0064
0.1589
refined
-6.1778
-9.0404
-21.7745
X-RAY DIFFRACTION
0.8315
0.1499
0.3777
-0.0399
0.0841
0.5556
-0.0556
0.1131
-0.1121
0.0241
0.1276
-0.0819
-0.0979
0.1235
-0.0366
0.1072
0.0046
-0.0018
0.0828
-0.0154
0.1555
refined
-9.6969
-12.0512
-10.5902
X-RAY DIFFRACTION
1.8798
0.5316
0.9844
1.1169
0.5476
0.5645
0.2903
-0.3451
0.3921
0.4161
-0.0853
0.0799
-0.4265
0.1737
-0.1014
0.1099
0.0008
0.0142
0.1683
-0.0195
0.1055
refined
-2.0832
-19.7934
18.9305
X-RAY DIFFRACTION
1.6586
-0.0706
-0.3528
0.7460
0.8405
0.7993
-0.0020
-0.2417
-0.0935
-0.0291
0.0131
-0.0692
-0.0183
-0.0501
-0.0207
0.0844
-0.0029
-0.0256
0.1210
0.0337
0.1332
refined
-6.1133
-23.7097
14.5821
X-RAY DIFFRACTION
0.1400
0.4582
-0.4441
1.1739
-0.8373
1.5878
-0.1218
-0.2380
-0.3990
-0.0418
-0.1695
-0.4216
0.1225
0.3374
0.2429
0.0981
0.0105
0.0143
0.2158
0.0860
0.1896
refined
1.9925
-28.1152
17.0447
X-RAY DIFFRACTION
0.7380
-0.4827
0.9612
1.9488
-0.6767
1.2677
-0.1907
-1.0648
0.0597
0.4026
0.7869
-0.6194
0.1887
-1.3870
-0.4654
0.2870
0.0851
-0.0586
0.5658
0.0530
0.1579
refined
-0.1477
-27.9986
26.9785
X-RAY DIFFRACTION
0.0174
-0.1004
-0.0922
1.6367
1.0710
0.7121
-0.0900
-0.0145
0.1144
0.8155
0.0040
-0.0904
0.1132
0.2355
0.0276
0.6832
-0.1104
-0.1052
0.3933
0.1370
0.2035
refined
-31.8409
-34.6148
-35.1025
X-RAY DIFFRACTION
0.5852
1.4648
1.1897
7.0366
1.9341
3.0070
0.3935
0.1241
-0.3276
0.3403
0.0164
0.6091
0.3858
0.5091
-0.3248
0.3234
0.0227
-0.0697
0.2081
0.0190
0.2582
refined
-27.3205
-26.9244
-32.9750
X-RAY DIFFRACTION
5.3688
4.0133
1.2409
4.5076
1.1427
0.3220
-0.4709
0.7445
0.2414
-0.5639
0.5493
0.2836
0.1175
0.0499
0.0063
0.1560
-0.0451
0.0158
0.2054
-0.0346
0.0756
refined
-21.7500
-19.3467
-30.7627
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain A and resid 0:13)
X-RAY DIFFRACTION
2
(chain A and resid 16:23)
X-RAY DIFFRACTION
3
(chain A and resid 24:30C)
X-RAY DIFFRACTION
4
(chain A and resid 30D:74)
X-RAY DIFFRACTION
5
(chain A and resid 75:105)
X-RAY DIFFRACTION
6
(chain A and resid 106:141)
X-RAY DIFFRACTION
7
(chain A and resid 142:147)
X-RAY DIFFRACTION
8
(chain A and resid 148:161)
X-RAY DIFFRACTION
9
(chain A and resid 162:185)
X-RAY DIFFRACTION
10
(chain A and resid 186:211)
X-RAY DIFFRACTION
11
(chain B and resid 1:5)
X-RAY DIFFRACTION
12
(chain B and resid 6:39)
X-RAY DIFFRACTION
13
(chain B and resid 40:59)
X-RAY DIFFRACTION
14
(chain B and resid 60:64)
X-RAY DIFFRACTION
15
(chain B and resid 65:81)
X-RAY DIFFRACTION
16
(chain B and resid 82:114)
X-RAY DIFFRACTION
17
(chain B and resid 115:137)
X-RAY DIFFRACTION
18
(chain B and resid 138:196)
X-RAY DIFFRACTION
19
(chain B and resid 197:220)
X-RAY DIFFRACTION
20
(chain B and resid 221:225)
X-RAY DIFFRACTION
21
(chain P and resid 653:658)
X-RAY DIFFRACTION
22
(chain P and resid 659:664)
X-RAY DIFFRACTION
23
(chain P and resid 665:670)
author_defined_assembly
3
trimeric
software_defined_assembly
PISA
6
hexameric
10640
-66
39230
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_454
-x-1,y,-z-1/2
crystal symmetry operation
-43.7530000000
0.0000000000
-70.5275000000
A
N
SER
7
B
N
SER
9
A
O
ARG
22
B
O
ARG
24
A
N
MET
21
B
N
MET
23
A
O
LEU
73
B
O
LEU
81
A
O
THR
74
B
O
THR
82
A
N
ILE
63
B
N
ILE
71
A
N
MET
13
B
N
MET
15
A
O
GLU
105
B
O
GLU
113
A
O
THR
102
B
O
THR
110
A
N
TYR
86
B
N
TYR
94
A
O
ASP
85
B
O
ASP
93
A
N
GLN
38
B
N
GLN
46
A
N
GLN
37
B
N
GLN
45
A
O
LYS
45
B
O
LYS
53
A
N
TYR
49
B
N
TYR
57
A
O
ILE
53
B
O
ILE
61
A
N
MET
13
B
N
MET
15
A
O
GLU
105
B
O
GLU
113
A
O
THR
102
B
O
THR
110
A
N
TYR
86
B
N
TYR
94
A
N
GLN
90
B
N
GLN
98
A
O
THR
97
B
O
THR
105
A
A
N
ASN
30
B
N
ASN
33
F
A
O
ARG
30
B
O
ARG
38
A
N
PHE
118
B
N
PHE
126
A
O
VAL
133
B
O
VAL
141
A
N
PHE
139
B
N
PHE
147
A
O
TYR
173
B
O
TYR
181
A
O
THR
178
B
O
THR
186
A
N
GLN
160
B
N
GLN
168
A
O
GLN
155
B
O
GLN
163
A
N
TRP
148
B
N
TRP
156
A
N
LYS
149
B
N
LYS
157
A
O
ALA
193
B
O
ALA
201
A
N
VAL
196
B
N
VAL
204
A
O
VAL
205
B
O
VAL
213
B
N
VAL
5
C
N
VAL
6
B
O
LYS
23
C
O
LYS
24
B
N
ILE
20
C
N
ILE
21
B
O
LEU
80
C
O
LEU
82
B
O
TYR
79
C
O
TYR
81
B
N
SER
70
C
N
SER
72
B
N
LYS
12
C
N
LYS
13
B
O
THR
110
C
O
THR
111
B
O
LEU
109
C
O
LEU
110
B
N
ALA
88
C
N
ALA
93
B
O
PHE
91
C
O
PHE
96
B
N
VAL
37
C
N
VAL
38
B
N
LYS
38
C
N
LYS
39
B
O
LYS
46
C
O
LYS
47
B
N
TRP
50
C
N
TRP
51
B
O
THR
58
C
O
THR
60
B
N
LYS
12
C
N
LYS
13
B
O
THR
110
C
O
THR
111
B
O
LEU
109
C
O
LEU
110
B
N
ALA
88
C
N
ALA
93
B
N
LEU
94
C
N
LEU
99
B
O
HIS
102
C
O
HIS
103
B
N
LEU
124
C
N
LEU
125
B
O
GLY
141
C
O
GLY
140
B
N
ALA
138
C
N
ALA
137
B
O
VAL
193
C
O
VAL
185
B
O
VAL
190
C
O
VAL
182
B
N
HIS
172
C
N
HIS
165
B
N
LEU
124
C
N
LEU
125
B
O
GLY
141
C
O
GLY
140
B
N
ALA
138
C
N
ALA
137
B
O
VAL
193
C
O
VAL
185
B
O
SER
186
C
O
SER
178
B
N
VAL
177
C
N
VAL
170
B
N
THR
153
C
N
THR
152
B
O
ASN
211
C
O
ASN
200
B
N
VAL
210
C
N
VAL
199
B
O
VAL
219
C
O
VAL
208
1
P
GLN
652
A
GLN
1
1
Y
1
A
ARG
-1
B
ARG
1
1
Y
1
A
SER
14
B
SER
16
1
Y
1
A
GLY
15
B
GLY
17
1
Y
1
A
GLY
212
B
GLY
220
1
Y
1
A
GLU
213
B
GLU
221
1
Y
1
A
CYS
214
B
CYS
222
1
Y
1
A
GLY
215
B
GLY
223
1
Y
1
A
SER
216
B
SER
224
1
Y
1
B
LEU
0
C
LEU
1
1
Y
1
B
PRO
41
C
PRO
42
1
Y
1
B
GLY
42
C
GLY
43
1
Y
1
B
SER
129
C
SER
128
1
Y
1
B
SER
130
C
SER
129
1
Y
1
B
LYS
131
C
LYS
130
1
Y
1
B
SER
132
C
SER
131
1
Y
1
B
THR
133
C
THR
132
1
Y
1
B
SER
134
C
SER
133
1
Y
1
B
GLY
135
C
GLY
134
1
Y
1
B
LYS
226
C
LYS
215
1
Y
1
B
SER
227
C
SER
216
1
Y
1
B
CYS
228
C
CYS
217
1
Y
1
B
ASP
229
C
ASP
218
1
Y
1
B
LYS
230
C
LYS
219
1
Y
1
A
A
NZ
OE1
LYS
GLN
145
147
1.89
1
B
B
O
O
LYS
HOH
64
259
2.11
1
A
ALA
51
71.20
-44.91
1
A
ASN
152
62.17
-1.51
1
B
ALA
88
176.33
173.48
1
B
ASP
146
60.79
67.99
-2.7826
0.0000
0.0000
0.2254
-0.0000
2.5573
0.2528
0.1811
0.1869
2.200
40.600
1986
24245
8.19
93.70
0.33
1
0.13
MOLECULAR REPLACEMENT
24.03
0.90
1.11
3MNV
ML
FLAT BULK SOLVENT MODEL
40.952
0.344
2.200
40.600
272
3685
4
0
3409
0.009
3525
1.117
4786
16.744
1243
0.070
534
0.012
606
0.2787
0.2088
2.2550
144
1614
97.00
0.3268
0.2112
2.3160
141
1617
96.00
0.3158
0.2158
2.3841
145
1604
96.00
0.2951
0.2092
2.4611
146
1612
96.00
0.3092
0.2045
2.5490
140
1570
94.00
0.2651
0.1938
2.6511
138
1559
94.00
0.2670
0.1856
2.7717
142
1571
93.00
0.2453
0.1809
2.9178
141
1571
93.00
0.2551
0.1789
3.1005
138
1541
91.00
0.2742
0.1799
3.3398
138
1551
91.00
0.2462
0.1676
3.6757
138
1549
91.00
0.2212
0.1613
4.2071
138
1558
91.00
0.2097
0.1273
5.2987
143
1631
94.00
0.2017
0.1799
40.6065
154
1711
93.00
2.2
47.0
3MNW
25866
24443
2.0
2.0
0.082
1
10.1
4.8
94.5
model building
PHENIX
refinement
PHENIX
(phenix.refine: dev_271)
data reduction
d*TREK
data scaling
d*TREK
phasing
PHENIX
N
Crystal structure of the non-neutralizing HIV antibody 13H11 Fab fragment with a gp41 MPER-derived peptide in a helical conformation
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
P
GLN
653
A
GLN
2
HELX_P
P
TRP
670
A
TRP
19
1
1
18
A
GLN
79
B
GLN
87
HELX_P
A
LEU
83
B
LEU
91
5
2
5
A
SER
121
B
SER
129
HELX_P
A
LYS
126
B
LYS
134
1
3
6
A
LYS
183
B
LYS
191
HELX_P
A
GLU
187
B
GLU
195
1
4
5
B
THR
28
C
THR
29
HELX_P
B
TYR
32
C
TYR
33
5
5
5
B
ASP
61
C
ASP
63
HELX_P
B
LYS
64
C
LYS
66
5
6
4
B
SER
73
C
SER
75
HELX_P
B
ALA
75
C
ALA
77
5
7
3
B
LYS
83
C
LYS
88
HELX_P
B
THR
87
C
THR
92
5
8
5
B
SER
163
C
SER
157
HELX_P
B
ALA
165
C
ALA
159
5
9
3
B
SER
196
C
SER
188
HELX_P
B
THR
200
C
THR
192
5
10
5
B
LYS
213
C
LYS
202
HELX_P
B
ASN
216
C
ASN
205
5
11
4
disulf
2.068
A
CYS
23
B
SG
CYS
25
1_555
A
CYS
88
B
SG
CYS
96
1_555
disulf
2.037
A
CYS
134
B
SG
CYS
142
1_555
A
CYS
194
B
SG
CYS
202
1_555
disulf
2.042
B
CYS
22
C
SG
CYS
23
1_555
B
CYS
92
C
SG
CYS
97
1_555
disulf
2.046
B
CYS
142
C
SG
CYS
141
1_555
B
CYS
208
C
SG
CYS
197
1_555
covale
1.339
both
P
ASN
671
A
C
ASN
20
1_555
P
NH2
672
A
N
NH2
21
1_555
IMMUNE SYSTEM
HIV-1, HIV gp41, MPER, 13H11, 2F5, Z13, 4E10, Fab antibody, IMMUNE SYSTEM
A
SER
7
B
SER
9
1
A
PRO
8
B
PRO
10
-5.60
A
THR
94
B
THR
102
1
A
PRO
95
B
PRO
103
0.59
A
TYR
140
B
TYR
148
1
A
PRO
141
B
PRO
149
1.38
B
ALA
125
C
ALA
126
1
B
PRO
126
C
PRO
127
3.32
B
PHE
148
C
PHE
147
1
B
PRO
149
C
PRO
148
-4.36
B
GLU
150
C
GLU
149
1
B
PRO
151
C
PRO
150
-1.99
3MNW
PDB
1
1
3MNW
3MNW
PDB
2
1
3MNW
Q8TCD0_HUMAN
UNP
2
126
Q8TCD0
GTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLT
LSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
3MNW
PDB
3
1
3MNW
S6B291_HUMAN
UNP
3
133
S6B291
TVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL
GTQTYICNVNHKPSNTKVDKRVEPKSCDK
652
672
3MNW
652
672
3MNW
P
1
1
21
-1
100
3MNW
-1
100
3MNW
A
2
1
108
126
239
3MNW
101
214
Q8TCD0
A
3
109
222
0
109
3MNW
0
109
3MNW
B
4
1
110
133
241
3MNW
110
230
S6B291
B
5
111
219
3
expression tag
GLY
215
3MNW
A
Q8TCD0
UNP
223
3
expression tag
SER
216
3MNW
A
Q8TCD0
UNP
224
4
6
4
2
4
4
4
6
4
4
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
4
B
LEU
6
A
SER
7
B
SER
9
A
VAL
19
B
VAL
21
A
SER
25
B
SER
27
A
ASP
70
B
ASP
78
A
ILE
75
B
ILE
83
A
PHE
62
B
PHE
70
A
SER
67
B
SER
75
A
SER
10
B
SER
12
A
MET
13
B
MET
15
A
THR
102
B
THR
110
A
ILE
106
B
ILE
114
A
ASP
85
B
ASP
93
A
GLN
90
B
GLN
98
A
LEU
33
B
LEU
41
A
GLN
38
B
GLN
46
A
LYS
45
B
LYS
53
A
TYR
49
B
TYR
57
A
ILE
53
B
ILE
61
A
ARG
54
B
ARG
62
A
SER
10
B
SER
12
A
MET
13
B
MET
15
A
THR
102
B
THR
110
A
ILE
106
B
ILE
114
A
ASP
85
B
ASP
93
A
GLN
90
B
GLN
98
A
THR
97
B
THR
105
A
PHE
98
B
PHE
106
A
LEU
30
B
LEU
32
A
ASN
30
B
ASN
33
A
A
ARG
30
B
ARG
38
A
ASN
31
B
ASN
39
F
A
SER
114
B
SER
122
A
PHE
118
B
PHE
126
A
THR
129
B
THR
137
A
PHE
139
B
PHE
147
A
TYR
173
B
TYR
181
A
SER
182
B
SER
190
A
SER
159
B
SER
167
A
VAL
163
B
VAL
171
A
ALA
153
B
ALA
161
A
GLN
155
B
GLN
163
A
LYS
145
B
LYS
153
A
VAL
150
B
VAL
158
A
VAL
191
B
VAL
199
A
THR
197
B
THR
205
A
VAL
205
B
VAL
213
A
ASN
210
B
ASN
218
B
GLN
3
C
GLN
4
B
GLN
6
C
GLN
7
B
VAL
18
C
VAL
19
B
SER
25
C
SER
26
B
THR
77
C
THR
79
B
ILE
82
C
ILE
84
B
PHE
67
C
PHE
69
B
GLU
72
C
GLU
74
B
GLU
10
C
GLU
11
B
LYS
12
C
LYS
13
B
THR
107
C
THR
108
B
VAL
111
C
VAL
112
B
ALA
88
C
ALA
93
B
LEU
94
C
LEU
99
B
VAL
34
C
VAL
35
B
GLN
39
C
GLN
40
B
LEU
45
C
LEU
46
B
ILE
51
C
ILE
52
B
PRO
57
C
PRO
59
B
TYR
59
C
TYR
61
B
GLU
10
C
GLU
11
B
LYS
12
C
LYS
13
B
THR
107
C
THR
108
B
VAL
111
C
VAL
112
B
ALA
88
C
ALA
93
B
LEU
94
C
LEU
99
B
HIS
102
C
HIS
103
B
TRP
103
C
TRP
104
B
SER
120
C
SER
121
B
LEU
124
C
LEU
125
B
THR
137
C
THR
136
B
TYR
147
C
TYR
146
B
TYR
185
C
TYR
177
B
PRO
194
C
PRO
186
B
VAL
171
C
VAL
164
B
THR
173
C
THR
166
B
SER
120
C
SER
121
B
LEU
124
C
LEU
125
B
THR
137
C
THR
136
B
TYR
147
C
TYR
146
B
TYR
185
C
TYR
177
B
PRO
194
C
PRO
186
B
VAL
177
C
VAL
170
B
LEU
178
C
LEU
171
B
THR
153
C
THR
152
B
TRP
157
C
TRP
155
B
ILE
207
C
ILE
196
B
HIS
212
C
HIS
201
B
THR
217
C
THR
206
B
ARG
222
C
ARG
211
BINDING SITE FOR RESIDUE EDO B 231
B
EDO
231
Software
7
B
LYS
83
C
LYS
88
7
4_555
B
LYS
83
C
LYS
88
7
1_555
B
ASN
84
C
ASN
89
7
4_555
B
ASN
84
C
ASN
89
7
1_555
B
GLU
85
C
GLU
90
7
1_555
B
HOH
306
G
HOH
7
4_555
B
HOH
306
G
HOH
7
1_555
20
C 2 2 21