0.011066
0.000000
0.000236
0.000000
0.016546
0.000000
0.000000
0.000000
0.012484
0.00000
0.00000
0.00000
Nicely, N.I.
Dennison, S.M.
Kelsoe, G.
Liao, H.-X.
Alam, S.M.
Haynes, B.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
91.22
90.00
90.365
60.436
80.118
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
R
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
S
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
N
C
Y
149
N
C
Y
150
N
N
Y
151
N
C
Y
152
N
C
Y
153
N
N
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
N
N
169
S
C
N
170
N
C
N
171
N
O
N
172
S
C
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
N
C
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
N
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
S
N
244
N
C
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
Y
262
N
C
Y
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
N
302
N
O
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
S
N
312
N
O
N
313
N
O
N
314
N
O
N
315
N
O
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
R
C
N
321
N
O
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
N
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
N
389
N
C
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
Y
146
N
sing
Y
147
N
doub
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
N
151
N
sing
Y
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
Y
254
N
doub
Y
255
N
sing
Y
256
N
sing
N
257
N
sing
Y
258
N
doub
N
259
N
sing
Y
260
N
doub
N
261
N
sing
Y
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
Y
327
N
doub
Y
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
doub
Y
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
Y
355
N
doub
Y
356
N
sing
Y
357
N
sing
N
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
To be Published
0353
Crystal Structure of a Non-Neutralizing HIV-1 gp41 Envelope Antibody Demonstrates Neutralization Mechanism of gp41 Antibodies
10.2210/pdb3mo1/pdb
pdb_00003mo1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-04-01
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
22-BM
APS
1.0
SYNCHROTRON
APS BEAMLINE 22-BM
24719.545
ANTI-HIV-1 ANTIBODY 13H11 LIGHT CHAIN
FUSION PROTEIN between mouse Fv and a human Fc
1
man
polymer
23521.475
ANTI-HIV-1 ANTIBODY 13H11 HEAVY CHAIN
FUSION PROTEIN between mouse Fv and a human Fc
1
man
polymer
59.044
ACETATE ION
5
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
345
nat
water
no
no
RLDIQLTQSPSSLAMSGGQKVTMRCKSSQSLLNSRNERNYLAWYQQKPGQSPKLLVYFASIRESGVPDRFIGSGSGTDFT
LTISSVQAEDLADYFCLQHYNTPWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDN
ALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGS
RLDIQLTQSPSSLAMSGGQKVTMRCKSSQSLLNSRNERNYLAWYQQKPGQSPKLLVYFASIRESGVPDRFIGSGSGTDFT
LTISSVQAEDLADYFCLQHYNTPWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDN
ALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGS
A
polypeptide(L)
no
no
LQIQLVQSGPELKKPGETVKISCKASGYTFTDYSVHWVKQVPGKGLKWMGWINTETGEPTYADDFKGRFAFSLESSASTA
YLEIHNLKNEDTATYFCALGWLHWGLGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL
TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
LQIQLVQSGPELKKPGETVKISCKASGYTFTDYSVHWVKQVPGKGLKWMGWINTETGEPTYADDFKGRFAFSLESSASTA
YLEIHNLKNEDTATYFCALGWLHWGLGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL
TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse,human
human
sample
10090,9606
Mus musculus,Homo sapiens
HEK293T CELL
9606
KIDNEY
Homo sapiens
PLASMID
mouse,human
human
sample
10090,9606
Mus musculus,Homo sapiens
HEK293T CELL
9606
KIDNEY
Homo sapiens
PLASMID
1
2.27
45.74
VAPOR DIFFUSION
7.2
Reservoir: Qiagen AmSO4 suite condition with 2 M ammonium sulfate, 0.2 M ammonium acetate. Drop: 0.5 uL protein + 0.5 uL reservoir., pH 7.2, VAPOR DIFFUSION, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-11-17
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of the non-neutralizing HIV antibody 13H11 Fab fragment
Crystal structure of the non-neutralizing HIV antibody 13H11 Fab fragment with a gp41 MPER-derived peptide in a helical conformation
Crystal structure of the non-neutralizing HIV antibody 13H11 Fab fragment with a gp41 MPER-derived peptide bearing Ala substitutions in a helical conformation
Crystal structure of the neutralizing HIV antibody 2F5 Fab fragment (recombinantly produced Fab) with 17 aa gp41 MPER-derived peptide
Crystal structure of the neutralizing HIV antibody 2F5 Fab fragment (recombinantly produced Fab) with 11 aa gp41 MPER-derived peptide
Crystal structure of the neutralizing HIV antibody 2F5 Fab fragment (recombinantly produced IgG) with 11 aa gp41 MPER-derived peptide
Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 11mer epitope
RCSB
Y
RCSB
2010-04-22
REL
REL
ACT
ACETATE ION
SO4
SULFATE ION
HOH
water
3MNV
PDB
experimental model
ACT
3
3
ACT
ACT
217
A
ACT
4
3
ACT
ACT
218
A
ACT
1
3
ACT
ACT
231
B
ACT
2
3
ACT
ACT
232
B
ACT
5
3
ACT
ACT
233
B
SO4
1
4
SO4
SO4
234
B
HOH
1
5
HOH
HOH
219
A
HOH
2
5
HOH
HOH
220
A
HOH
221
5
HOH
HOH
221
A
HOH
4
5
HOH
HOH
222
A
HOH
223
5
HOH
HOH
223
A
HOH
224
5
HOH
HOH
224
A
HOH
5
5
HOH
HOH
225
A
HOH
226
5
HOH
HOH
226
A
HOH
6
5
HOH
HOH
227
A
HOH
228
5
HOH
HOH
228
A
HOH
229
5
HOH
HOH
229
A
HOH
230
5
HOH
HOH
230
A
HOH
231
5
HOH
HOH
231
A
HOH
7
5
HOH
HOH
232
A
HOH
8
5
HOH
HOH
233
A
HOH
234
5
HOH
HOH
234
A
HOH
235
5
HOH
HOH
235
A
HOH
9
5
HOH
HOH
236
A
HOH
237
5
HOH
HOH
237
A
HOH
238
5
HOH
HOH
238
A
HOH
239
5
HOH
HOH
239
A
HOH
10
5
HOH
HOH
240
A
HOH
11
5
HOH
HOH
241
A
HOH
13
5
HOH
HOH
242
A
HOH
15
5
HOH
HOH
243
A
HOH
244
5
HOH
HOH
244
A
HOH
245
5
HOH
HOH
245
A
HOH
16
5
HOH
HOH
246
A
HOH
19
5
HOH
HOH
247
A
HOH
21
5
HOH
HOH
248
A
HOH
22
5
HOH
HOH
249
A
HOH
23
5
HOH
HOH
250
A
HOH
24
5
HOH
HOH
251
A
HOH
28
5
HOH
HOH
252
A
HOH
29
5
HOH
HOH
253
A
HOH
31
5
HOH
HOH
254
A
HOH
255
5
HOH
HOH
255
A
HOH
256
5
HOH
HOH
256
A
HOH
32
5
HOH
HOH
257
A
HOH
34
5
HOH
HOH
258
A
HOH
35
5
HOH
HOH
259
A
HOH
37
5
HOH
HOH
260
A
HOH
261
5
HOH
HOH
261
A
HOH
262
5
HOH
HOH
262
A
HOH
38
5
HOH
HOH
263
A
HOH
39
5
HOH
HOH
264
A
HOH
42
5
HOH
HOH
265
A
HOH
266
5
HOH
HOH
266
A
HOH
43
5
HOH
HOH
267
A
HOH
49
5
HOH
HOH
268
A
HOH
269
5
HOH
HOH
269
A
HOH
51
5
HOH
HOH
270
A
HOH
271
5
HOH
HOH
271
A
HOH
272
5
HOH
HOH
272
A
HOH
273
5
HOH
HOH
273
A
HOH
274
5
HOH
HOH
274
A
HOH
275
5
HOH
HOH
275
A
HOH
276
5
HOH
HOH
276
A
HOH
54
5
HOH
HOH
277
A
HOH
55
5
HOH
HOH
278
A
HOH
58
5
HOH
HOH
279
A
HOH
280
5
HOH
HOH
280
A
HOH
59
5
HOH
HOH
281
A
HOH
60
5
HOH
HOH
282
A
HOH
283
5
HOH
HOH
283
A
HOH
63
5
HOH
HOH
284
A
HOH
66
5
HOH
HOH
285
A
HOH
67
5
HOH
HOH
286
A
HOH
287
5
HOH
HOH
287
A
HOH
68
5
HOH
HOH
288
A
HOH
289
5
HOH
HOH
289
A
HOH
69
5
HOH
HOH
290
A
HOH
291
5
HOH
HOH
291
A
HOH
71
5
HOH
HOH
292
A
HOH
293
5
HOH
HOH
293
A
HOH
72
5
HOH
HOH
294
A
HOH
73
5
HOH
HOH
295
A
HOH
75
5
HOH
HOH
296
A
HOH
297
5
HOH
HOH
297
A
HOH
298
5
HOH
HOH
298
A
HOH
299
5
HOH
HOH
299
A
HOH
76
5
HOH
HOH
300
A
HOH
301
5
HOH
HOH
301
A
HOH
81
5
HOH
HOH
302
A
HOH
303
5
HOH
HOH
303
A
HOH
304
5
HOH
HOH
304
A
HOH
82
5
HOH
HOH
305
A
HOH
306
5
HOH
HOH
306
A
HOH
307
5
HOH
HOH
307
A
HOH
83
5
HOH
HOH
308
A
HOH
309
5
HOH
HOH
309
A
HOH
87
5
HOH
HOH
310
A
HOH
88
5
HOH
HOH
311
A
HOH
89
5
HOH
HOH
312
A
HOH
90
5
HOH
HOH
313
A
HOH
314
5
HOH
HOH
314
A
HOH
315
5
HOH
HOH
315
A
HOH
316
5
HOH
HOH
316
A
HOH
317
5
HOH
HOH
317
A
HOH
91
5
HOH
HOH
318
A
HOH
319
5
HOH
HOH
319
A
HOH
320
5
HOH
HOH
320
A
HOH
321
5
HOH
HOH
321
A
HOH
322
5
HOH
HOH
322
A
HOH
323
5
HOH
HOH
323
A
HOH
92
5
HOH
HOH
324
A
HOH
93
5
HOH
HOH
325
A
HOH
94
5
HOH
HOH
326
A
HOH
95
5
HOH
HOH
327
A
HOH
100
5
HOH
HOH
328
A
HOH
101
5
HOH
HOH
329
A
HOH
102
5
HOH
HOH
330
A
HOH
103
5
HOH
HOH
331
A
HOH
332
5
HOH
HOH
332
A
HOH
333
5
HOH
HOH
333
A
HOH
334
5
HOH
HOH
334
A
HOH
104
5
HOH
HOH
335
A
HOH
336
5
HOH
HOH
336
A
HOH
337
5
HOH
HOH
337
A
HOH
338
5
HOH
HOH
338
A
HOH
107
5
HOH
HOH
339
A
HOH
340
5
HOH
HOH
340
A
HOH
115
5
HOH
HOH
341
A
HOH
342
5
HOH
HOH
342
A
HOH
343
5
HOH
HOH
343
A
HOH
344
5
HOH
HOH
344
A
HOH
345
5
HOH
HOH
345
A
HOH
118
5
HOH
HOH
346
A
HOH
125
5
HOH
HOH
347
A
HOH
126
5
HOH
HOH
348
A
HOH
127
5
HOH
HOH
349
A
HOH
129
5
HOH
HOH
350
A
HOH
130
5
HOH
HOH
351
A
HOH
134
5
HOH
HOH
352
A
HOH
137
5
HOH
HOH
353
A
HOH
139
5
HOH
HOH
354
A
HOH
140
5
HOH
HOH
355
A
HOH
142
5
HOH
HOH
356
A
HOH
143
5
HOH
HOH
357
A
HOH
144
5
HOH
HOH
358
A
HOH
145
5
HOH
HOH
359
A
HOH
150
5
HOH
HOH
360
A
HOH
156
5
HOH
HOH
361
A
HOH
159
5
HOH
HOH
362
A
HOH
160
5
HOH
HOH
363
A
HOH
164
5
HOH
HOH
364
A
HOH
166
5
HOH
HOH
365
A
HOH
167
5
HOH
HOH
366
A
HOH
168
5
HOH
HOH
367
A
HOH
169
5
HOH
HOH
368
A
HOH
173
5
HOH
HOH
369
A
HOH
176
5
HOH
HOH
370
A
HOH
179
5
HOH
HOH
371
A
HOH
180
5
HOH
HOH
372
A
HOH
181
5
HOH
HOH
373
A
HOH
182
5
HOH
HOH
374
A
HOH
185
5
HOH
HOH
375
A
HOH
186
5
HOH
HOH
376
A
HOH
189
5
HOH
HOH
377
A
HOH
195
5
HOH
HOH
378
A
HOH
198
5
HOH
HOH
379
A
HOH
200
5
HOH
HOH
380
A
HOH
205
5
HOH
HOH
381
A
HOH
206
5
HOH
HOH
382
A
HOH
207
5
HOH
HOH
383
A
HOH
208
5
HOH
HOH
384
A
HOH
212
5
HOH
HOH
385
A
HOH
213
5
HOH
HOH
386
A
HOH
217
5
HOH
HOH
387
A
HOH
218
5
HOH
HOH
388
A
HOH
279
5
HOH
HOH
389
A
HOH
97
5
HOH
HOH
97
B
HOH
98
5
HOH
HOH
98
B
HOH
99
5
HOH
HOH
99
B
HOH
131
5
HOH
HOH
131
B
HOH
132
5
HOH
HOH
132
B
HOH
155
5
HOH
HOH
155
B
HOH
158
5
HOH
HOH
158
B
HOH
161
5
HOH
HOH
161
B
HOH
170
5
HOH
HOH
170
B
HOH
201
5
HOH
HOH
201
B
HOH
202
5
HOH
HOH
202
B
HOH
204
5
HOH
HOH
204
B
HOH
3
5
HOH
HOH
235
B
HOH
236
5
HOH
HOH
236
B
HOH
12
5
HOH
HOH
237
B
HOH
14
5
HOH
HOH
238
B
HOH
17
5
HOH
HOH
239
B
HOH
240
5
HOH
HOH
240
B
HOH
241
5
HOH
HOH
241
B
HOH
242
5
HOH
HOH
242
B
HOH
243
5
HOH
HOH
243
B
HOH
18
5
HOH
HOH
244
B
HOH
20
5
HOH
HOH
245
B
HOH
246
5
HOH
HOH
246
B
HOH
247
5
HOH
HOH
247
B
HOH
248
5
HOH
HOH
248
B
HOH
249
5
HOH
HOH
249
B
HOH
250
5
HOH
HOH
250
B
HOH
251
5
HOH
HOH
251
B
HOH
252
5
HOH
HOH
252
B
HOH
253
5
HOH
HOH
253
B
HOH
254
5
HOH
HOH
254
B
HOH
25
5
HOH
HOH
255
B
HOH
26
5
HOH
HOH
256
B
HOH
257
5
HOH
HOH
257
B
HOH
258
5
HOH
HOH
258
B
HOH
259
5
HOH
HOH
259
B
HOH
260
5
HOH
HOH
260
B
HOH
27
5
HOH
HOH
261
B
HOH
30
5
HOH
HOH
262
B
HOH
263
5
HOH
HOH
263
B
HOH
264
5
HOH
HOH
264
B
HOH
265
5
HOH
HOH
265
B
HOH
33
5
HOH
HOH
266
B
HOH
267
5
HOH
HOH
267
B
HOH
268
5
HOH
HOH
268
B
HOH
36
5
HOH
HOH
269
B
HOH
270
5
HOH
HOH
270
B
HOH
40
5
HOH
HOH
271
B
HOH
41
5
HOH
HOH
272
B
HOH
44
5
HOH
HOH
273
B
HOH
45
5
HOH
HOH
274
B
HOH
46
5
HOH
HOH
275
B
HOH
47
5
HOH
HOH
276
B
HOH
277
5
HOH
HOH
277
B
HOH
278
5
HOH
HOH
278
B
HOH
48
5
HOH
HOH
280
B
HOH
281
5
HOH
HOH
281
B
HOH
282
5
HOH
HOH
282
B
HOH
50
5
HOH
HOH
283
B
HOH
284
5
HOH
HOH
284
B
HOH
285
5
HOH
HOH
285
B
HOH
286
5
HOH
HOH
286
B
HOH
52
5
HOH
HOH
287
B
HOH
288
5
HOH
HOH
288
B
HOH
53
5
HOH
HOH
289
B
HOH
290
5
HOH
HOH
290
B
HOH
56
5
HOH
HOH
291
B
HOH
292
5
HOH
HOH
292
B
HOH
57
5
HOH
HOH
293
B
HOH
294
5
HOH
HOH
294
B
HOH
295
5
HOH
HOH
295
B
HOH
296
5
HOH
HOH
296
B
HOH
61
5
HOH
HOH
297
B
HOH
62
5
HOH
HOH
298
B
HOH
64
5
HOH
HOH
299
B
HOH
300
5
HOH
HOH
300
B
HOH
65
5
HOH
HOH
301
B
HOH
302
5
HOH
HOH
302
B
HOH
70
5
HOH
HOH
303
B
HOH
74
5
HOH
HOH
304
B
HOH
305
5
HOH
HOH
305
B
HOH
77
5
HOH
HOH
306
B
HOH
78
5
HOH
HOH
307
B
HOH
308
5
HOH
HOH
308
B
HOH
79
5
HOH
HOH
309
B
HOH
310
5
HOH
HOH
310
B
HOH
311
5
HOH
HOH
311
B
HOH
312
5
HOH
HOH
312
B
HOH
313
5
HOH
HOH
313
B
HOH
80
5
HOH
HOH
314
B
HOH
84
5
HOH
HOH
315
B
HOH
85
5
HOH
HOH
316
B
HOH
86
5
HOH
HOH
317
B
HOH
318
5
HOH
HOH
318
B
HOH
96
5
HOH
HOH
319
B
HOH
105
5
HOH
HOH
320
B
HOH
106
5
HOH
HOH
321
B
HOH
108
5
HOH
HOH
322
B
HOH
109
5
HOH
HOH
323
B
HOH
324
5
HOH
HOH
324
B
HOH
325
5
HOH
HOH
325
B
HOH
326
5
HOH
HOH
326
B
HOH
327
5
HOH
HOH
327
B
HOH
328
5
HOH
HOH
328
B
HOH
329
5
HOH
HOH
329
B
HOH
330
5
HOH
HOH
330
B
HOH
331
5
HOH
HOH
331
B
HOH
110
5
HOH
HOH
332
B
HOH
111
5
HOH
HOH
333
B
HOH
112
5
HOH
HOH
334
B
HOH
335
5
HOH
HOH
335
B
HOH
113
5
HOH
HOH
336
B
HOH
114
5
HOH
HOH
337
B
HOH
116
5
HOH
HOH
338
B
HOH
339
5
HOH
HOH
339
B
HOH
117
5
HOH
HOH
340
B
HOH
341
5
HOH
HOH
341
B
HOH
119
5
HOH
HOH
342
B
HOH
120
5
HOH
HOH
343
B
HOH
121
5
HOH
HOH
344
B
HOH
122
5
HOH
HOH
345
B
HOH
123
5
HOH
HOH
346
B
HOH
124
5
HOH
HOH
347
B
HOH
128
5
HOH
HOH
348
B
HOH
133
5
HOH
HOH
349
B
HOH
135
5
HOH
HOH
350
B
HOH
136
5
HOH
HOH
351
B
HOH
138
5
HOH
HOH
352
B
HOH
141
5
HOH
HOH
353
B
HOH
146
5
HOH
HOH
354
B
HOH
147
5
HOH
HOH
355
B
HOH
148
5
HOH
HOH
356
B
HOH
149
5
HOH
HOH
357
B
HOH
151
5
HOH
HOH
358
B
HOH
152
5
HOH
HOH
359
B
HOH
153
5
HOH
HOH
360
B
HOH
154
5
HOH
HOH
361
B
HOH
157
5
HOH
HOH
362
B
HOH
162
5
HOH
HOH
363
B
HOH
163
5
HOH
HOH
364
B
HOH
165
5
HOH
HOH
365
B
HOH
171
5
HOH
HOH
366
B
HOH
172
5
HOH
HOH
367
B
HOH
174
5
HOH
HOH
368
B
HOH
175
5
HOH
HOH
369
B
HOH
177
5
HOH
HOH
370
B
HOH
178
5
HOH
HOH
371
B
HOH
183
5
HOH
HOH
372
B
HOH
184
5
HOH
HOH
373
B
HOH
187
5
HOH
HOH
374
B
HOH
188
5
HOH
HOH
375
B
HOH
190
5
HOH
HOH
376
B
HOH
191
5
HOH
HOH
377
B
HOH
192
5
HOH
HOH
378
B
HOH
193
5
HOH
HOH
379
B
HOH
194
5
HOH
HOH
380
B
HOH
196
5
HOH
HOH
381
B
HOH
197
5
HOH
HOH
382
B
HOH
199
5
HOH
HOH
383
B
HOH
203
5
HOH
HOH
384
B
HOH
209
5
HOH
HOH
385
B
HOH
210
5
HOH
HOH
386
B
HOH
211
5
HOH
HOH
387
B
HOH
214
5
HOH
HOH
388
B
HOH
215
5
HOH
HOH
389
B
HOH
216
5
HOH
HOH
390
B
HOH
219
5
HOH
HOH
391
B
HOH
220
5
HOH
HOH
392
B
HOH
222
5
HOH
HOH
393
B
HOH
225
5
HOH
HOH
394
B
HOH
227
5
HOH
HOH
395
B
HOH
232
5
HOH
HOH
396
B
HOH
233
5
HOH
HOH
397
B
n
1
-1
A
LEU
0
n
2
LEU
0
A
ASP
1
n
3
ASP
1
A
ILE
2
n
4
ILE
2
A
GLN
3
n
5
GLN
3
A
LEU
4
n
6
LEU
4
A
THR
5
n
7
THR
5
A
GLN
6
n
8
GLN
6
A
SER
7
n
9
SER
7
A
PRO
8
n
10
PRO
8
A
SER
9
n
11
SER
9
A
SER
10
n
12
SER
10
A
LEU
11
n
13
LEU
11
A
ALA
12
n
14
ALA
12
A
MET
13
n
15
MET
13
A
SER
14
n
16
SER
14
A
GLY
15
n
17
GLY
15
A
GLY
16
n
18
GLY
16
A
GLN
17
n
19
GLN
17
A
LYS
18
n
20
LYS
18
A
VAL
19
n
21
VAL
19
A
THR
20
n
22
THR
20
A
MET
21
n
23
MET
21
A
ARG
22
n
24
ARG
22
A
CYS
23
n
25
CYS
23
A
LYS
24
n
26
LYS
24
A
SER
25
n
27
SER
25
A
SER
26
n
28
SER
26
A
GLN
27
n
29
GLN
27
A
SER
28
n
30
SER
28
A
LEU
29
n
31
LEU
29
A
LEU
30
n
32
LEU
30
A
ASN
30
n
33
A
ASN
30
A
SER
30
n
34
B
SER
30
A
ARG
30
n
35
C
ARG
30
A
ASN
30
n
36
D
ASN
30
A
GLU
30
n
37
E
GLU
30
A
ARG
30
n
38
F
ARG
30
A
ASN
31
n
39
ASN
31
A
TYR
32
n
40
TYR
32
A
LEU
33
n
41
LEU
33
A
ALA
34
n
42
ALA
34
A
TRP
35
n
43
TRP
35
A
TYR
36
n
44
TYR
36
A
GLN
37
n
45
GLN
37
A
GLN
38
n
46
GLN
38
A
LYS
39
n
47
LYS
39
A
PRO
40
n
48
PRO
40
A
GLY
41
n
49
GLY
41
A
GLN
42
n
50
GLN
42
A
SER
43
n
51
SER
43
A
PRO
44
n
52
PRO
44
A
LYS
45
n
53
LYS
45
A
LEU
46
n
54
LEU
46
A
LEU
47
n
55
LEU
47
A
VAL
48
n
56
VAL
48
A
TYR
49
n
57
TYR
49
A
PHE
50
n
58
PHE
50
A
ALA
51
n
59
ALA
51
A
SER
52
n
60
SER
52
A
ILE
53
n
61
ILE
53
A
ARG
54
n
62
ARG
54
A
GLU
55
n
63
GLU
55
A
SER
56
n
64
SER
56
A
GLY
57
n
65
GLY
57
A
VAL
58
n
66
VAL
58
A
PRO
59
n
67
PRO
59
A
ASP
60
n
68
ASP
60
A
ARG
61
n
69
ARG
61
A
PHE
62
n
70
PHE
62
A
ILE
63
n
71
ILE
63
A
GLY
64
n
72
GLY
64
A
SER
65
n
73
SER
65
A
GLY
66
n
74
GLY
66
A
SER
67
n
75
SER
67
A
GLY
68
n
76
GLY
68
A
THR
69
n
77
THR
69
A
ASP
70
n
78
ASP
70
A
PHE
71
n
79
PHE
71
A
THR
72
n
80
THR
72
A
LEU
73
n
81
LEU
73
A
THR
74
n
82
THR
74
A
ILE
75
n
83
ILE
75
A
SER
76
n
84
SER
76
A
SER
77
n
85
SER
77
A
VAL
78
n
86
VAL
78
A
GLN
79
n
87
GLN
79
A
ALA
80
n
88
ALA
80
A
GLU
81
n
89
GLU
81
A
ASP
82
n
90
ASP
82
A
LEU
83
n
91
LEU
83
A
ALA
84
n
92
ALA
84
A
ASP
85
n
93
ASP
85
A
TYR
86
n
94
TYR
86
A
PHE
87
n
95
PHE
87
A
CYS
88
n
96
CYS
88
A
LEU
89
n
97
LEU
89
A
GLN
90
n
98
GLN
90
A
HIS
91
n
99
HIS
91
A
TYR
92
n
100
TYR
92
A
ASN
93
n
101
ASN
93
A
THR
94
n
102
THR
94
A
PRO
95
n
103
PRO
95
A
TRP
96
n
104
TRP
96
A
THR
97
n
105
THR
97
A
PHE
98
n
106
PHE
98
A
GLY
99
n
107
GLY
99
A
GLY
100
n
108
GLY
100
A
GLY
101
n
109
GLY
101
A
THR
102
n
110
THR
102
A
LYS
103
n
111
LYS
103
A
LEU
104
n
112
LEU
104
A
GLU
105
n
113
GLU
105
A
ILE
106
n
114
ILE
106
A
LYS
107
n
115
LYS
107
A
ARG
108
n
116
ARG
108
A
THR
109
n
117
THR
109
A
VAL
110
n
118
VAL
110
A
ALA
111
n
119
ALA
111
A
ALA
112
n
120
ALA
112
A
PRO
113
n
121
PRO
113
A
SER
114
n
122
SER
114
A
VAL
115
n
123
VAL
115
A
PHE
116
n
124
PHE
116
A
ILE
117
n
125
ILE
117
A
PHE
118
n
126
PHE
118
A
PRO
119
n
127
PRO
119
A
PRO
120
n
128
PRO
120
A
SER
121
n
129
SER
121
A
ASP
122
n
130
ASP
122
A
GLU
123
n
131
GLU
123
A
GLN
124
n
132
GLN
124
A
LEU
125
n
133
LEU
125
A
LYS
126
n
134
LYS
126
A
SER
127
n
135
SER
127
A
GLY
128
n
136
GLY
128
A
THR
129
n
137
THR
129
A
ALA
130
n
138
ALA
130
A
SER
131
n
139
SER
131
A
VAL
132
n
140
VAL
132
A
VAL
133
n
141
VAL
133
A
CYS
134
n
142
CYS
134
A
LEU
135
n
143
LEU
135
A
LEU
136
n
144
LEU
136
A
ASN
137
n
145
ASN
137
A
ASN
138
n
146
ASN
138
A
PHE
139
n
147
PHE
139
A
TYR
140
n
148
TYR
140
A
PRO
141
n
149
PRO
141
A
ARG
142
n
150
ARG
142
A
GLU
143
n
151
GLU
143
A
ALA
144
n
152
ALA
144
A
LYS
145
n
153
LYS
145
A
VAL
146
n
154
VAL
146
A
GLN
147
n
155
GLN
147
A
TRP
148
n
156
TRP
148
A
LYS
149
n
157
LYS
149
A
VAL
150
n
158
VAL
150
A
ASP
151
n
159
ASP
151
A
ASN
152
n
160
ASN
152
A
ALA
153
n
161
ALA
153
A
LEU
154
n
162
LEU
154
A
GLN
155
n
163
GLN
155
A
SER
156
n
164
SER
156
A
GLY
157
n
165
GLY
157
A
ASN
158
n
166
ASN
158
A
SER
159
n
167
SER
159
A
GLN
160
n
168
GLN
160
A
GLU
161
n
169
GLU
161
A
SER
162
n
170
SER
162
A
VAL
163
n
171
VAL
163
A
THR
164
n
172
THR
164
A
GLU
165
n
173
GLU
165
A
GLN
166
n
174
GLN
166
A
ASP
167
n
175
ASP
167
A
SER
168
n
176
SER
168
A
LYS
169
n
177
LYS
169
A
ASP
170
n
178
ASP
170
A
SER
171
n
179
SER
171
A
THR
172
n
180
THR
172
A
TYR
173
n
181
TYR
173
A
SER
174
n
182
SER
174
A
LEU
175
n
183
LEU
175
A
SER
176
n
184
SER
176
A
SER
177
n
185
SER
177
A
THR
178
n
186
THR
178
A
LEU
179
n
187
LEU
179
A
THR
180
n
188
THR
180
A
LEU
181
n
189
LEU
181
A
SER
182
n
190
SER
182
A
LYS
183
n
191
LYS
183
A
ALA
184
n
192
ALA
184
A
ASP
185
n
193
ASP
185
A
TYR
186
n
194
TYR
186
A
GLU
187
n
195
GLU
187
A
LYS
188
n
196
LYS
188
A
HIS
189
n
197
HIS
189
A
LYS
190
n
198
LYS
190
A
VAL
191
n
199
VAL
191
A
TYR
192
n
200
TYR
192
A
ALA
193
n
201
ALA
193
A
CYS
194
n
202
CYS
194
A
GLU
195
n
203
GLU
195
A
VAL
196
n
204
VAL
196
A
THR
197
n
205
THR
197
A
HIS
198
n
206
HIS
198
A
GLN
199
n
207
GLN
199
A
GLY
200
n
208
GLY
200
A
LEU
201
n
209
LEU
201
A
SER
202
n
210
SER
202
A
SER
203
n
211
SER
203
A
PRO
204
n
212
PRO
204
A
VAL
205
n
213
VAL
205
A
THR
206
n
214
THR
206
A
LYS
207
n
215
LYS
207
A
SER
208
n
216
SER
208
A
PHE
209
n
217
PHE
209
A
ASN
210
n
218
ASN
210
A
ARG
211
n
219
ARG
211
A
n
220
212
A
n
221
213
A
n
222
214
A
n
223
215
A
n
224
216
A
LEU
0
n
1
LEU
0
B
GLN
1
n
2
GLN
1
B
ILE
2
n
3
ILE
2
B
GLN
3
n
4
GLN
3
B
LEU
4
n
5
LEU
4
B
VAL
5
n
6
VAL
5
B
GLN
6
n
7
GLN
6
B
SER
7
n
8
SER
7
B
GLY
8
n
9
GLY
8
B
PRO
9
n
10
PRO
9
B
GLU
10
n
11
GLU
10
B
LEU
11
n
12
LEU
11
B
LYS
12
n
13
LYS
12
B
LYS
13
n
14
LYS
13
B
PRO
14
n
15
PRO
14
B
GLY
15
n
16
GLY
15
B
GLU
16
n
17
GLU
16
B
THR
17
n
18
THR
17
B
VAL
18
n
19
VAL
18
B
LYS
19
n
20
LYS
19
B
ILE
20
n
21
ILE
20
B
SER
21
n
22
SER
21
B
CYS
22
n
23
CYS
22
B
LYS
23
n
24
LYS
23
B
ALA
24
n
25
ALA
24
B
SER
25
n
26
SER
25
B
GLY
26
n
27
GLY
26
B
TYR
27
n
28
TYR
27
B
THR
28
n
29
THR
28
B
PHE
29
n
30
PHE
29
B
THR
30
n
31
THR
30
B
ASP
31
n
32
ASP
31
B
TYR
32
n
33
TYR
32
B
SER
33
n
34
SER
33
B
VAL
34
n
35
VAL
34
B
HIS
35
n
36
HIS
35
B
TRP
36
n
37
TRP
36
B
VAL
37
n
38
VAL
37
B
LYS
38
n
39
LYS
38
B
GLN
39
n
40
GLN
39
B
VAL
40
n
41
VAL
40
B
PRO
41
n
42
PRO
41
B
GLY
42
n
43
GLY
42
B
LYS
43
n
44
LYS
43
B
GLY
44
n
45
GLY
44
B
LEU
45
n
46
LEU
45
B
LYS
46
n
47
LYS
46
B
TRP
47
n
48
TRP
47
B
MET
48
n
49
MET
48
B
GLY
49
n
50
GLY
49
B
TRP
50
n
51
TRP
50
B
ILE
51
n
52
ILE
51
B
ASN
52
n
53
ASN
52
B
THR
52
n
54
A
THR
52
B
GLU
53
n
55
GLU
53
B
THR
54
n
56
THR
54
B
GLY
55
n
57
GLY
55
B
GLU
56
n
58
GLU
56
B
PRO
57
n
59
PRO
57
B
THR
58
n
60
THR
58
B
TYR
59
n
61
TYR
59
B
ALA
60
n
62
ALA
60
B
ASP
61
n
63
ASP
61
B
ASP
62
n
64
ASP
62
B
PHE
63
n
65
PHE
63
B
LYS
64
n
66
LYS
64
B
GLY
65
n
67
GLY
65
B
ARG
66
n
68
ARG
66
B
PHE
67
n
69
PHE
67
B
ALA
68
n
70
ALA
68
B
PHE
69
n
71
PHE
69
B
SER
70
n
72
SER
70
B
LEU
71
n
73
LEU
71
B
GLU
72
n
74
GLU
72
B
SER
73
n
75
SER
73
B
SER
74
n
76
SER
74
B
ALA
75
n
77
ALA
75
B
SER
76
n
78
SER
76
B
THR
77
n
79
THR
77
B
ALA
78
n
80
ALA
78
B
TYR
79
n
81
TYR
79
B
LEU
80
n
82
LEU
80
B
GLU
81
n
83
GLU
81
B
ILE
82
n
84
ILE
82
B
HIS
82
n
85
A
HIS
82
B
ASN
82
n
86
B
ASN
82
B
LEU
82
n
87
C
LEU
82
B
LYS
83
n
88
LYS
83
B
ASN
84
n
89
ASN
84
B
GLU
85
n
90
GLU
85
B
ASP
86
n
91
ASP
86
B
THR
87
n
92
THR
87
B
ALA
88
n
93
ALA
88
B
THR
89
n
94
THR
89
B
TYR
90
n
95
TYR
90
B
PHE
91
n
96
PHE
91
B
CYS
92
n
97
CYS
92
B
ALA
93
n
98
ALA
93
B
LEU
94
n
99
LEU
94
B
GLY
95
n
100
GLY
95
B
TRP
96
n
101
TRP
96
B
LEU
101
n
102
LEU
101
B
HIS
102
n
103
HIS
102
B
TRP
103
n
104
TRP
103
B
GLY
104
n
105
GLY
104
B
LEU
105
n
106
LEU
105
B
GLY
106
n
107
GLY
106
B
THR
107
n
108
THR
107
B
THR
108
n
109
THR
108
B
LEU
109
n
110
LEU
109
B
THR
110
n
111
THR
110
B
VAL
111
n
112
VAL
111
B
SER
112
n
113
SER
112
B
SER
113
n
114
SER
113
B
ALA
114
n
115
ALA
114
B
SER
115
n
116
SER
115
B
THR
116
n
117
THR
116
B
LYS
117
n
118
LYS
117
B
GLY
118
n
119
GLY
118
B
PRO
119
n
120
PRO
119
B
SER
120
n
121
SER
120
B
VAL
121
n
122
VAL
121
B
PHE
122
n
123
PHE
122
B
PRO
123
n
124
PRO
123
B
LEU
124
n
125
LEU
124
B
ALA
125
n
126
ALA
125
B
PRO
126
n
127
PRO
126
B
SER
127
n
128
SER
127
B
SER
128
n
129
SER
128
B
LYS
129
n
130
LYS
129
B
SER
130
n
131
SER
130
B
THR
133
n
132
THR
133
B
SER
134
n
133
SER
134
B
GLY
135
n
134
GLY
135
B
GLY
136
n
135
GLY
136
B
THR
137
n
136
THR
137
B
ALA
138
n
137
ALA
138
B
ALA
139
n
138
ALA
139
B
LEU
140
n
139
LEU
140
B
GLY
141
n
140
GLY
141
B
CYS
142
n
141
CYS
142
B
LEU
143
n
142
LEU
143
B
VAL
144
n
143
VAL
144
B
LYS
145
n
144
LYS
145
B
ASP
146
n
145
ASP
146
B
TYR
147
n
146
TYR
147
B
PHE
148
n
147
PHE
148
B
PRO
149
n
148
PRO
149
B
GLU
150
n
149
GLU
150
B
PRO
151
n
150
PRO
151
B
VAL
152
n
151
VAL
152
B
THR
153
n
152
THR
153
B
VAL
154
n
153
VAL
154
B
SER
156
n
154
SER
156
B
TRP
157
n
155
TRP
157
B
ASN
162
n
156
ASN
162
B
SER
163
n
157
SER
163
B
GLY
164
n
158
GLY
164
B
ALA
165
n
159
ALA
165
B
LEU
166
n
160
LEU
166
B
THR
167
n
161
THR
167
B
SER
168
n
162
SER
168
B
GLY
169
n
163
GLY
169
B
VAL
171
n
164
VAL
171
B
HIS
172
n
165
HIS
172
B
THR
173
n
166
THR
173
B
PHE
174
n
167
PHE
174
B
PRO
175
n
168
PRO
175
B
ALA
176
n
169
ALA
176
B
VAL
177
n
170
VAL
177
B
LEU
178
n
171
LEU
178
B
GLN
179
n
172
GLN
179
B
SER
180
n
173
SER
180
B
SER
182
n
174
SER
182
B
GLY
183
n
175
GLY
183
B
LEU
184
n
176
LEU
184
B
TYR
185
n
177
TYR
185
B
SER
186
n
178
SER
186
B
LEU
187
n
179
LEU
187
B
SER
188
n
180
SER
188
B
SER
189
n
181
SER
189
B
VAL
190
n
182
VAL
190
B
VAL
191
n
183
VAL
191
B
THR
192
n
184
THR
192
B
VAL
193
n
185
VAL
193
B
PRO
194
n
186
PRO
194
B
SER
195
n
187
SER
195
B
SER
196
n
188
SER
196
B
SER
197
n
189
SER
197
B
LEU
198
n
190
LEU
198
B
GLY
199
n
191
GLY
199
B
THR
200
n
192
THR
200
B
GLN
203
n
193
GLN
203
B
THR
205
n
194
THR
205
B
TYR
206
n
195
TYR
206
B
ILE
207
n
196
ILE
207
B
CYS
208
n
197
CYS
208
B
ASN
209
n
198
ASN
209
B
VAL
210
n
199
VAL
210
B
ASN
211
n
200
ASN
211
B
HIS
212
n
201
HIS
212
B
LYS
213
n
202
LYS
213
B
PRO
214
n
203
PRO
214
B
SER
215
n
204
SER
215
B
ASN
216
n
205
ASN
216
B
THR
217
n
206
THR
217
B
LYS
218
n
207
LYS
218
B
VAL
219
n
208
VAL
219
B
ASP
220
n
209
ASP
220
B
LYS
221
n
210
LYS
221
B
ARG
222
n
211
ARG
222
B
VAL
223
n
212
VAL
223
B
GLU
224
n
213
GLU
224
B
PRO
225
n
214
PRO
225
B
LYS
226
n
215
LYS
226
B
n
216
227
B
n
217
228
B
n
218
229
B
n
219
230
B
6.1767
-2.5537
-3.0604
3.1727
3.3390
3.8165
-0.0950
-1.0126
0.8120
0.0670
0.4857
-0.4009
0.1216
0.6990
-0.4024
0.1968
0.0452
-0.0377
0.3176
-0.1204
0.2169
refined
-11.9907
241.1655
32.3460
X-RAY DIFFRACTION
3.6644
-0.9337
-1.3216
1.1375
0.4758
0.5967
-0.2068
-0.3950
-0.1984
-0.0145
0.2218
0.0616
0.0825
0.0767
0.0497
0.2227
0.0877
-0.0007
0.2164
0.0060
0.1200
refined
-16.7702
230.4173
30.1585
X-RAY DIFFRACTION
3.9962
-1.3751
-0.6158
0.9572
1.0025
0.6998
0.0313
-0.1281
0.2842
0.0021
0.0694
-0.1703
0.1538
0.1338
-0.0974
0.2075
0.0516
-0.0012
0.2263
-0.0467
0.1409
refined
-10.7202
233.8277
26.4327
X-RAY DIFFRACTION
3.0295
-2.1269
-1.6301
1.4629
0.9571
2.2365
0.1942
-0.2767
0.5668
-0.1917
0.1919
-0.2363
-0.3942
0.1270
-0.2090
0.1758
0.0270
0.0194
0.2008
-0.0844
0.1864
refined
-19.9477
241.7997
30.6732
X-RAY DIFFRACTION
1.3016
-0.1388
-0.0220
0.5603
0.7504
2.1127
0.0352
0.2080
-0.0505
-0.0638
0.0015
0.0653
0.0785
0.2190
-0.0255
0.1813
-0.0200
-0.0226
0.2193
-0.0187
0.1421
refined
-18.4556
229.2069
-5.8779
X-RAY DIFFRACTION
0.2480
-0.1430
0.3955
0.4024
-0.4443
0.6085
-0.0853
-0.1063
0.0164
-0.0430
0.1276
0.0403
-0.2731
-0.0602
-0.0153
0.2146
0.0485
-0.0212
0.3043
-0.0323
0.1249
refined
-17.9476
234.3519
-5.7562
X-RAY DIFFRACTION
3.4789
-0.1804
0.6898
1.1162
-0.1489
0.1648
0.1231
0.6537
0.2367
-0.3400
0.0442
-0.0178
-0.2151
0.2902
-0.0832
0.2949
0.0461
-0.0002
0.3600
0.0110
0.1214
refined
-18.9866
241.1996
-14.0195
X-RAY DIFFRACTION
0.5182
-0.5888
0.4209
0.9114
-0.4780
0.4538
0.0554
-0.1456
-0.1014
-0.0234
0.1505
0.1507
0.2047
-0.1229
-0.0909
0.2338
0.0430
-0.0121
0.2397
-0.0156
0.1501
refined
-16.6945
231.6493
2.6470
X-RAY DIFFRACTION
1.5939
0.0530
-0.2396
0.4914
-0.0458
0.0646
-0.0757
0.7306
-0.1393
-0.2591
-0.1349
0.0391
0.1068
0.0070
0.1651
0.2741
0.0621
-0.0813
0.4809
-0.0040
0.1173
refined
-26.3294
237.5953
-20.8119
X-RAY DIFFRACTION
1.3405
-0.2424
-0.7873
0.3975
-0.2202
0.7042
-0.0290
-0.1426
0.0982
-0.0429
-0.0514
-0.0342
-0.2715
0.2345
0.0590
0.1988
0.0249
0.0009
0.3100
-0.0608
0.1068
refined
-11.1627
232.2135
-12.9946
X-RAY DIFFRACTION
3.1490
-3.0324
2.3527
4.5414
-4.5818
5.0983
-0.0470
-0.1427
-1.0368
-1.9357
-0.2192
0.5899
1.2066
0.0467
0.4129
0.6594
0.1265
0.1992
0.3227
0.0948
0.6456
refined
-32.5225
222.3349
29.5503
X-RAY DIFFRACTION
1.5712
-0.3526
-0.8968
0.2300
0.5123
2.1138
0.0999
0.1887
-0.5652
-0.1291
-0.1794
0.4114
0.3230
-0.1070
0.0728
0.2355
0.0355
-0.0027
0.2211
-0.0586
0.3635
refined
-41.0945
235.2831
23.4785
X-RAY DIFFRACTION
3.7917
-1.9231
1.3628
2.8193
-0.6879
0.5999
0.1536
0.4630
-0.4031
-0.1545
-0.0356
0.2512
0.0735
0.1232
-0.1275
0.1775
0.0400
0.0277
0.1474
-0.0383
0.2079
refined
-30.2526
239.0093
27.8625
X-RAY DIFFRACTION
3.5781
0.4701
-1.3189
0.2798
0.0954
1.0117
0.0076
-0.4300
-0.0987
-0.0189
-0.1301
0.1697
-0.1217
0.2164
0.1089
0.1835
0.0307
0.0302
0.2128
-0.0047
0.2578
refined
-37.0972
241.5300
37.0759
X-RAY DIFFRACTION
0.9780
-0.4984
-0.6537
2.3676
-0.3712
1.1569
0.0968
0.1376
-0.0570
0.1402
-0.1551
0.1918
-0.1126
-0.2262
0.0669
0.1880
0.0387
-0.0002
0.1779
-0.0512
0.2542
refined
-42.2670
241.8545
28.7975
X-RAY DIFFRACTION
1.8174
-0.4576
-0.6859
0.3049
0.7244
1.4503
0.1997
0.2395
-0.3069
-0.0594
-0.1673
0.2112
0.1862
-0.0869
0.0023
0.2200
0.0771
0.0002
0.1851
-0.0208
0.2274
refined
-32.7416
239.1216
22.7092
X-RAY DIFFRACTION
2.2663
-2.6384
-1.7678
5.2161
3.7433
3.7103
-0.2460
0.4117
-0.3716
0.0001
-0.2370
0.6735
-0.0104
-0.3458
0.3838
0.1993
0.0539
-0.0048
0.2792
-0.0311
0.2772
refined
-35.3251
233.0283
-3.7467
X-RAY DIFFRACTION
1.9981
-2.3176
0.5295
3.3935
-0.0370
0.2637
0.1807
0.3394
0.0060
-0.4889
-0.1557
0.0114
-0.1403
-0.2791
-0.0036
0.2115
0.0068
0.0245
0.2243
-0.0009
0.2295
refined
-27.2353
229.0155
-3.2987
X-RAY DIFFRACTION
0.0987
-0.0092
0.1570
0.2869
0.1336
-0.0279
-0.0945
0.0048
-0.0180
0.0065
0.0843
0.0991
-0.0306
-0.2183
-0.0216
0.2120
0.0000
0.0029
0.2469
0.0262
0.1786
refined
-27.0679
225.0016
-0.8020
X-RAY DIFFRACTION
0.6202
0.7480
0.9766
2.3472
-0.6473
3.7248
0.0990
0.1794
0.1833
-0.0352
0.0649
0.5396
0.4153
-0.7676
-0.1484
0.2093
-0.0460
-0.0198
0.3699
0.0492
0.3128
refined
-37.2547
225.5577
-0.9589
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain A and resid 0:30F)
X-RAY DIFFRACTION
2
(chain A and resid 31:65)
X-RAY DIFFRACTION
3
(chain A and resid 66:88)
X-RAY DIFFRACTION
4
(chain A and resid 89:105)
X-RAY DIFFRACTION
5
(chain A and resid 106:125)
X-RAY DIFFRACTION
6
(chain A and resid 126:147)
X-RAY DIFFRACTION
7
(chain A and resid 148:162)
X-RAY DIFFRACTION
8
(chain A and resid 163:180)
X-RAY DIFFRACTION
9
(chain A and resid 181:194)
X-RAY DIFFRACTION
10
(chain A and resid 195:211)
X-RAY DIFFRACTION
11
(chain B and resid 0:4)
X-RAY DIFFRACTION
12
(chain B and resid 5:30)
X-RAY DIFFRACTION
13
(chain B and resid 31:46)
X-RAY DIFFRACTION
14
(chain B and resid 47:61)
X-RAY DIFFRACTION
15
(chain B and resid 62:82C)
X-RAY DIFFRACTION
16
(chain B and resid 83:112)
X-RAY DIFFRACTION
17
(chain B and resid 113:127)
X-RAY DIFFRACTION
18
(chain B and resid 128:154)
X-RAY DIFFRACTION
19
(chain B and resid 156:210)
X-RAY DIFFRACTION
20
(chain B and resid 211:226)
author_and_software_defined_assembly
PISA
2
dimeric
3450
-25
19650
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
7
A
N
SER
9
A
O
ARG
22
A
O
ARG
24
A
N
CYS
23
A
N
CYS
25
A
O
PHE
71
A
O
PHE
79
A
O
THR
74
A
O
THR
82
A
N
ILE
63
A
N
ILE
71
A
N
LEU
11
A
N
LEU
13
A
O
GLU
105
A
O
GLU
113
A
O
LEU
104
A
O
LEU
112
A
N
ALA
84
A
N
ALA
92
A
O
ASP
85
A
O
ASP
93
A
N
GLN
38
A
N
GLN
46
A
N
TRP
35
A
N
TRP
43
A
O
LEU
47
A
O
LEU
55
A
N
TYR
49
A
N
TYR
57
A
O
ILE
53
A
O
ILE
61
A
N
LEU
11
A
N
LEU
13
A
O
GLU
105
A
O
GLU
113
A
O
LEU
104
A
O
LEU
112
A
N
ALA
84
A
N
ALA
92
A
N
GLN
90
A
N
GLN
98
A
O
THR
97
A
O
THR
105
A
N
PHE
116
A
N
PHE
124
A
O
LEU
135
A
O
LEU
143
A
N
LEU
136
A
N
LEU
144
A
O
LEU
175
A
O
LEU
183
A
O
THR
178
A
O
THR
186
A
N
GLN
160
A
N
GLN
168
A
O
ALA
153
A
O
ALA
161
A
N
VAL
150
A
N
VAL
158
A
N
GLN
147
A
N
GLN
155
A
O
GLU
195
A
O
GLU
203
A
N
VAL
196
A
N
VAL
204
A
O
VAL
205
A
O
VAL
213
B
N
VAL
5
B
N
VAL
6
B
O
LYS
23
B
O
LYS
24
B
N
CYS
22
B
N
CYS
23
B
O
ALA
78
B
O
ALA
80
B
O
GLU
81
B
O
GLU
83
B
N
ALA
68
B
N
ALA
70
B
N
LYS
12
B
N
LYS
13
B
O
THR
110
B
O
THR
111
B
O
LEU
109
B
O
LEU
110
B
N
ALA
88
B
N
ALA
93
B
O
ALA
93
B
O
ALA
98
B
N
HIS
35
B
N
HIS
36
B
N
LYS
38
B
N
LYS
39
B
O
LYS
46
B
O
LYS
47
B
N
TRP
50
B
N
TRP
51
B
O
THR
58
B
O
THR
60
B
N
LYS
12
B
N
LYS
13
B
O
THR
110
B
O
THR
111
B
O
LEU
109
B
O
LEU
110
B
N
ALA
88
B
N
ALA
93
B
N
LEU
94
B
N
LEU
99
B
O
HIS
102
B
O
HIS
103
B
N
LEU
124
B
N
LEU
125
B
O
GLY
141
B
O
GLY
140
B
N
VAL
144
B
N
VAL
143
B
O
LEU
187
B
O
LEU
179
B
O
VAL
190
B
O
VAL
182
B
N
HIS
172
B
N
HIS
165
B
N
SER
134
B
N
SER
133
B
O
THR
137
B
O
THR
136
B
N
VAL
144
B
N
VAL
143
B
O
LEU
187
B
O
LEU
179
B
O
SER
186
B
O
SER
178
B
N
VAL
177
B
N
VAL
170
B
N
SER
156
B
N
SER
154
B
O
ASN
209
B
O
ASN
198
B
N
VAL
210
B
N
VAL
199
B
O
VAL
219
B
O
VAL
208
1
B
ACT
233
G
ACT
1
B
SO4
234
H
SO4
1
B
HOH
394
J
HOH
1
A
ARG
-1
A
ARG
1
1
Y
1
A
GLY
212
A
GLY
220
1
Y
1
A
GLU
213
A
GLU
221
1
Y
1
A
CYS
214
A
CYS
222
1
Y
1
A
GLY
215
A
GLY
223
1
Y
1
A
SER
216
A
SER
224
1
Y
1
B
SER
227
B
SER
216
1
Y
1
B
CYS
228
B
CYS
217
1
Y
1
B
ASP
229
B
ASP
218
1
Y
1
B
LYS
230
B
LYS
219
1
Y
1
B
B
OG
O
SER
HOH
197
235
1.65
B
1
B
B
O
O
PRO
HOH
126
313
1.79
1
B
B
O
O
HOH
HOH
268
327
1.99
1
B
B
O4
O
SO4
HOH
234
329
2.01
1
B
B
O
O
HOH
HOH
305
308
2.15
1
B
B
OG
CH3
SER
ACT
33
232
2.19
B
1
A
ALA
51
70.98
-41.43
1
A
ASN
152
74.95
-1.14
1
B
LYS
43
94.83
-7.79
1
B
ALA
88
176.99
172.05
1
B
ASP
146
71.56
60.24
-5.5595
0.0000
0.8531
6.5605
0.0000
-1.0010
0.2208
0.1869
0.1886
1.800
40.050
1997
38721
5.16
96.38
0.25
1
0.25
MOLECULAR REPLACEMENT
23.50
0.90
1.11
3MNV
ML
FLAT BULK SOLVENT MODEL
44.331
0.377
1.800
40.050
345
3693
25
0
3323
0.009
3464
1.155
4702
15.112
1226
0.081
529
0.005
599
0.2901
0.2185
1.8450
144
2637
97.00
0.2495
0.2062
1.8949
141
2605
97.00
0.2758
0.2141
1.9507
141
2621
96.00
0.2519
0.1841
2.0136
142
2597
96.00
0.2152
0.1752
2.0856
140
2573
95.00
0.2249
0.1743
2.1691
141
2582
95.00
0.2585
0.1982
2.2678
141
2564
95.00
0.2528
0.1960
2.3874
138
2561
95.00
0.2660
0.1950
2.5369
140
2567
95.00
0.2310
0.1964
2.7328
142
2619
95.00
0.2537
0.2029
3.0077
142
2613
96.00
0.2366
0.1846
3.4427
145
2673
98.00
0.1767
0.1506
4.3366
149
2734
100.00
0.1586
0.1664
40.0598
151
2778
99.00
1.8
42.3
3MO1
40173
38807
2.0
2.0
0.073
1
13.2
7.0
96.6
model building
PHENIX
refinement
PHENIX
(phenix.refine: dev_271)
data reduction
d*TREK
data scaling
d*TREK
phasing
PHENIX
N
Crystal structure of the non-neutralizing HIV antibody 13H11 Fab fragment
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
The biological unit is a heterodimer of one light chain (A) and one heavy chain fragment (B). The biological unit in this structure is the same as the asymmetric unit.
A
GLN
79
A
GLN
87
HELX_P
A
LEU
83
A
LEU
91
5
1
5
A
SER
121
A
SER
129
HELX_P
A
SER
127
A
SER
135
1
2
7
A
LYS
183
A
LYS
191
HELX_P
A
GLU
187
A
GLU
195
1
3
5
B
THR
28
B
THR
29
HELX_P
B
TYR
32
B
TYR
33
5
4
5
B
ASP
61
B
ASP
63
HELX_P
B
LYS
64
B
LYS
66
5
5
4
B
SER
73
B
SER
75
HELX_P
B
ALA
75
B
ALA
77
5
6
3
B
LYS
83
B
LYS
88
HELX_P
B
THR
87
B
THR
92
5
7
5
B
SER
163
B
SER
157
HELX_P
B
ALA
165
B
ALA
159
5
8
3
B
SER
196
B
SER
188
HELX_P
B
LEU
198
B
LEU
190
5
9
3
B
LYS
213
B
LYS
202
HELX_P
B
ASN
216
B
ASN
205
5
10
4
disulf
2.062
A
CYS
23
A
SG
CYS
25
1_555
A
CYS
88
A
SG
CYS
96
1_555
disulf
2.066
A
CYS
134
A
SG
CYS
142
1_555
A
CYS
194
A
SG
CYS
202
1_555
disulf
2.045
B
CYS
22
B
SG
CYS
23
1_555
B
CYS
92
B
SG
CYS
97
1_555
disulf
2.041
B
CYS
142
B
SG
CYS
141
1_555
B
CYS
208
B
SG
CYS
197
1_555
IMMUNE SYSTEM
HIV-1, HIV, gp41 MPER, 13H11, 2F5, Z13, 4E10, Fab antibody, IMMUNE SYSTEM
A
SER
7
A
SER
9
1
A
PRO
8
A
PRO
10
-6.21
A
THR
94
A
THR
102
1
A
PRO
95
A
PRO
103
-3.17
A
TYR
140
A
TYR
148
1
A
PRO
141
A
PRO
149
0.29
B
PHE
148
B
PHE
147
1
B
PRO
149
B
PRO
148
-2.78
B
GLU
150
B
GLU
149
1
B
PRO
151
B
PRO
150
2.22
3MO1
PDB
1
3MO1
3MO1
PDB
2
3MO1
-1
216
3MO1
-1
216
3MO1
A
1
1
224
0
230
3MO1
0
230
3MO1
B
2
1
219
4
6
4
4
4
4
6
4
4
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
4
A
LEU
6
A
SER
7
A
SER
9
A
VAL
19
A
VAL
21
A
SER
25
A
SER
27
A
ASP
70
A
ASP
78
A
ILE
75
A
ILE
83
A
PHE
62
A
PHE
70
A
SER
67
A
SER
75
A
SER
10
A
SER
12
A
SER
14
A
SER
16
A
THR
102
A
THR
110
A
LYS
107
A
LYS
115
A
ALA
84
A
ALA
92
A
GLN
90
A
GLN
98
A
LEU
33
A
LEU
41
A
GLN
38
A
GLN
46
A
LYS
45
A
LYS
53
A
TYR
49
A
TYR
57
A
ILE
53
A
ILE
61
A
ARG
54
A
ARG
62
A
SER
10
A
SER
12
A
SER
14
A
SER
16
A
THR
102
A
THR
110
A
LYS
107
A
LYS
115
A
ALA
84
A
ALA
92
A
GLN
90
A
GLN
98
A
THR
97
A
THR
105
A
PHE
98
A
PHE
106
A
SER
114
A
SER
122
A
PHE
118
A
PHE
126
A
THR
129
A
THR
137
A
PHE
139
A
PHE
147
A
TYR
173
A
TYR
181
A
SER
182
A
SER
190
A
SER
159
A
SER
167
A
VAL
163
A
VAL
171
A
ALA
153
A
ALA
161
A
LEU
154
A
LEU
162
A
LYS
145
A
LYS
153
A
VAL
150
A
VAL
158
A
VAL
191
A
VAL
199
A
THR
197
A
THR
205
A
VAL
205
A
VAL
213
A
ASN
210
A
ASN
218
B
GLN
3
B
GLN
4
B
GLN
6
B
GLN
7
B
VAL
18
B
VAL
19
B
SER
25
B
SER
26
B
THR
77
B
THR
79
B
ILE
82
B
ILE
84
B
PHE
67
B
PHE
69
B
GLU
72
B
GLU
74
B
GLU
10
B
GLU
11
B
LYS
12
B
LYS
13
B
THR
107
B
THR
108
B
VAL
111
B
VAL
112
B
ALA
88
B
ALA
93
B
LEU
94
B
LEU
99
B
VAL
34
B
VAL
35
B
GLN
39
B
GLN
40
B
LEU
45
B
LEU
46
B
ILE
51
B
ILE
52
B
PRO
57
B
PRO
59
B
TYR
59
B
TYR
61
B
GLU
10
B
GLU
11
B
LYS
12
B
LYS
13
B
THR
107
B
THR
108
B
VAL
111
B
VAL
112
B
ALA
88
B
ALA
93
B
LEU
94
B
LEU
99
B
HIS
102
B
HIS
103
B
TRP
103
B
TRP
104
B
SER
120
B
SER
121
B
LEU
124
B
LEU
125
B
THR
137
B
THR
136
B
TYR
147
B
TYR
146
B
TYR
185
B
TYR
177
B
PRO
194
B
PRO
186
B
HIS
172
B
HIS
165
B
THR
173
B
THR
166
B
THR
133
B
THR
132
B
SER
134
B
SER
133
B
THR
137
B
THR
136
B
TYR
147
B
TYR
146
B
TYR
185
B
TYR
177
B
PRO
194
B
PRO
186
B
VAL
177
B
VAL
170
B
LEU
178
B
LEU
171
B
THR
153
B
THR
152
B
TRP
157
B
TRP
155
B
ILE
207
B
ILE
196
B
HIS
212
B
HIS
201
B
THR
217
B
THR
206
B
ARG
222
B
ARG
211
BINDING SITE FOR RESIDUE ACT A 217
A
ACT
217
Software
4
BINDING SITE FOR RESIDUE ACT A 218
A
ACT
218
Software
4
BINDING SITE FOR RESIDUE ACT B 231
B
ACT
231
Software
5
BINDING SITE FOR RESIDUE ACT B 232
B
ACT
232
Software
4
BINDING SITE FOR RESIDUE ACT B 233
B
ACT
233
Software
2
BINDING SITE FOR RESIDUE SO4 B 234
B
SO4
234
Software
7
A
GLN
17
A
GLN
19
4
1_555
A
LYS
18
A
LYS
20
4
1_555
A
HOH
329
I
HOH
4
1_555
A
HOH
333
I
HOH
4
1_555
A
LYS
39
A
LYS
47
4
1_555
A
GLN
42
A
GLN
50
4
1_555
A
LYS
45
A
LYS
53
4
1_555
A
HOH
261
I
HOH
4
1_555
A
TYR
32
A
TYR
40
5
1_555
A
HIS
91
A
HIS
99
5
1_555
B
TRP
96
B
TRP
101
5
1_555
B
HOH
249
J
HOH
5
1_555
B
HOH
327
J
HOH
5
1_555
B
THR
30
B
THR
31
4
1_555
B
SER
33
B
SER
34
4
1_555
B
ASN
52
B
ASN
53
4
1_555
B
THR
52
B
THR
54
A
4
1_555
B
GLY
55
B
GLY
57
2
2_456
B
GLY
55
B
GLY
57
2
1_555
B
THR
116
B
THR
117
7
1_555
B
LYS
117
B
LYS
118
7
1_555
B
LYS
117
B
LYS
118
7
2_455
B
GLY
118
B
GLY
119
7
1_555
B
GLY
118
B
GLY
119
7
2_455
B
HOH
329
J
HOH
7
1_555
B
HOH
329
J
HOH
7
2_455
5
C 1 2 1