0.028399 0.000000 0.000000 0.000000 0.021273 0.000000 0.000000 0.000000 0.012804 0.00000 0.00000 0.00000 Vollmuth, F. Geyer, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 35.213 47.008 78.101 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C9 H18 N2 O3 202.251 n N~6~-propanoyl-L-lysine N(6)-Propionyllysine L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N O N 90 N C N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 S C N 100 N C N 101 N O N 102 N C N 103 N C N 104 N C N 105 N O N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 N C N 139 N C N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 N C Y 152 N C Y 153 N N Y 154 N C Y 155 N C Y 156 N N N 157 N O N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N O N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 S C N 176 N C N 177 N C N 178 N C N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N C N 223 N N N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N S N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N C N 284 N N N 285 N O N 286 S C N 287 N C N 288 N C N 289 N C N 290 N C N 291 N N N 292 N C N 293 N O N 294 N C N 295 N C N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C N 320 N C N 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N N N 333 S C N 334 N C N 335 N O N 336 N C N 337 N O N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 R C N 351 N O N 352 N C N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N N Y 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C N 377 N O N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N N N 391 S C N 392 N C N 393 N O N 394 N C Y 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C N 401 N O N 402 N O N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N N N 415 S C N 416 N C N 417 N O N 418 N C N 419 N C N 420 N C N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing Y 149 N sing Y 150 N doub Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing Y 257 N doub Y 258 N sing Y 259 N sing N 260 N sing Y 261 N doub N 262 N sing Y 263 N doub N 264 N sing Y 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing Y 357 N doub Y 358 N sing Y 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N sing Y 366 N doub N 367 N sing Y 368 N doub N 369 N sing Y 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N doub N 381 N sing N 382 N sing N 383 N sing N 384 N sing Y 385 N doub Y 386 N sing Y 387 N sing N 388 N sing Y 389 N doub N 390 N sing Y 391 N doub N 392 N sing Y 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing GE Angew.Chem.Int.Ed.Engl. 9999 1433-7851 49 6768 6772 10.1002/anie.201002724 20715035 Interaction of propionylated and butyrylated histone H3 lysine marks with Brd4 bromodomains 2010 10.2210/pdb3muk/pdb pdb_00003muk 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2009-11-15 MARMOSAIC 225 mm CCD Diamond(111) SINGLE WAVELENGTH M x-ray 1 1.00 1.0 X10SA SLS 1.00 SYNCHROTRON SLS BEAMLINE X10SA 15385.665 Bromodomain-containing protein 4 bromodomain, UNP residues 42-168 1 man polymer 890.040 peptide of Histone H3.3 histone H3 peptide, UNP residues 22-29 1 syn polymer 62.068 1,2-ETHANEDIOL 1 syn non-polymer 18.015 water 151 nat water Mitotic chromosome-associated protein, MCAP no no GAMGSTNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENN YYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE GAMGSTNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENN YYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE A polypeptide(L) no yes AT(PRK)AARKS ATXAARKS D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample Brd4, Mcap 10090 Mus musculus 562 Escherichia coli BL21(DE3) Plasmid pProEx-HTb 1 1.99 38.06 VAPOR DIFFUSION, HANGING DROP 8.0 3.6M Na formate, 10% glycerol, soaked with 20-times excess of histone octapeptide, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2010-08-11 1 1 2011-07-13 1 2 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2010-05-03 REL REL EDO 1,2-ETHANEDIOL HOH water Fmoc solid phase synthesis sample 3JVJ PDB ENTRY 3JVJ PDB experimental model EDO 1 3 EDO EDO 1 A HOH 2 4 HOH HOH 2 A HOH 3 4 HOH HOH 3 A HOH 4 4 HOH HOH 4 A HOH 5 4 HOH HOH 5 A HOH 6 4 HOH HOH 6 A HOH 7 4 HOH HOH 7 A HOH 8 4 HOH HOH 8 A HOH 9 4 HOH HOH 9 A HOH 10 4 HOH HOH 10 A HOH 11 4 HOH HOH 11 A HOH 12 4 HOH HOH 12 A HOH 13 4 HOH HOH 13 A HOH 15 4 HOH HOH 15 A HOH 16 4 HOH HOH 16 A HOH 17 4 HOH HOH 17 A HOH 18 4 HOH HOH 18 A HOH 20 4 HOH HOH 20 A HOH 21 4 HOH HOH 21 A HOH 22 4 HOH HOH 22 A HOH 23 4 HOH HOH 23 A HOH 24 4 HOH HOH 24 A HOH 25 4 HOH HOH 25 A HOH 26 4 HOH HOH 26 A HOH 27 4 HOH HOH 27 A HOH 28 4 HOH HOH 28 A HOH 29 4 HOH HOH 29 A HOH 30 4 HOH HOH 30 A HOH 31 4 HOH HOH 31 A HOH 32 4 HOH HOH 32 A HOH 33 4 HOH HOH 33 A HOH 34 4 HOH HOH 34 A HOH 35 4 HOH HOH 35 A HOH 36 4 HOH HOH 36 A HOH 37 4 HOH HOH 37 A HOH 1 4 HOH HOH 169 A HOH 38 4 HOH HOH 170 A HOH 39 4 HOH HOH 171 A HOH 40 4 HOH HOH 172 A HOH 41 4 HOH HOH 173 A HOH 42 4 HOH HOH 174 A HOH 43 4 HOH HOH 175 A HOH 44 4 HOH HOH 176 A HOH 45 4 HOH HOH 177 A HOH 46 4 HOH HOH 178 A HOH 47 4 HOH HOH 179 A HOH 48 4 HOH HOH 180 A HOH 49 4 HOH HOH 181 A HOH 50 4 HOH HOH 182 A HOH 51 4 HOH HOH 183 A HOH 52 4 HOH HOH 184 A HOH 53 4 HOH HOH 185 A HOH 54 4 HOH HOH 186 A HOH 55 4 HOH HOH 187 A HOH 56 4 HOH HOH 188 A HOH 57 4 HOH HOH 189 A HOH 58 4 HOH HOH 190 A HOH 59 4 HOH HOH 191 A HOH 60 4 HOH HOH 192 A HOH 61 4 HOH HOH 193 A HOH 62 4 HOH HOH 194 A HOH 63 4 HOH HOH 195 A HOH 64 4 HOH HOH 196 A HOH 65 4 HOH HOH 197 A HOH 66 4 HOH HOH 198 A HOH 67 4 HOH HOH 199 A HOH 68 4 HOH HOH 200 A HOH 69 4 HOH HOH 201 A HOH 70 4 HOH HOH 202 A HOH 71 4 HOH HOH 203 A HOH 72 4 HOH HOH 204 A HOH 73 4 HOH HOH 205 A HOH 74 4 HOH HOH 206 A HOH 75 4 HOH HOH 207 A HOH 76 4 HOH HOH 208 A HOH 77 4 HOH HOH 209 A HOH 78 4 HOH HOH 210 A HOH 79 4 HOH HOH 211 A HOH 80 4 HOH HOH 212 A HOH 81 4 HOH HOH 213 A HOH 82 4 HOH HOH 214 A HOH 83 4 HOH HOH 215 A HOH 84 4 HOH HOH 216 A HOH 85 4 HOH HOH 217 A HOH 86 4 HOH HOH 218 A HOH 87 4 HOH HOH 219 A HOH 88 4 HOH HOH 220 A HOH 89 4 HOH HOH 221 A HOH 90 4 HOH HOH 222 A HOH 91 4 HOH HOH 223 A HOH 93 4 HOH HOH 225 A HOH 94 4 HOH HOH 226 A HOH 96 4 HOH HOH 227 A HOH 97 4 HOH HOH 228 A HOH 98 4 HOH HOH 229 A HOH 99 4 HOH HOH 230 A HOH 100 4 HOH HOH 231 A HOH 101 4 HOH HOH 232 A HOH 102 4 HOH HOH 233 A HOH 103 4 HOH HOH 234 A HOH 104 4 HOH HOH 235 A HOH 105 4 HOH HOH 236 A HOH 106 4 HOH HOH 237 A HOH 107 4 HOH HOH 238 A HOH 108 4 HOH HOH 239 A HOH 109 4 HOH HOH 240 A HOH 110 4 HOH HOH 241 A HOH 111 4 HOH HOH 242 A HOH 112 4 HOH HOH 243 A HOH 113 4 HOH HOH 244 A HOH 114 4 HOH HOH 245 A HOH 115 4 HOH HOH 246 A HOH 116 4 HOH HOH 247 A HOH 117 4 HOH HOH 248 A HOH 118 4 HOH HOH 249 A HOH 119 4 HOH HOH 250 A HOH 120 4 HOH HOH 251 A HOH 121 4 HOH HOH 252 A HOH 122 4 HOH HOH 253 A HOH 123 4 HOH HOH 254 A HOH 124 4 HOH HOH 255 A HOH 125 4 HOH HOH 256 A HOH 126 4 HOH HOH 257 A HOH 129 4 HOH HOH 258 A HOH 130 4 HOH HOH 259 A HOH 132 4 HOH HOH 260 A HOH 133 4 HOH HOH 261 A HOH 134 4 HOH HOH 262 A HOH 135 4 HOH HOH 263 A HOH 136 4 HOH HOH 264 A HOH 137 4 HOH HOH 265 A HOH 138 4 HOH HOH 266 A HOH 139 4 HOH HOH 267 A HOH 140 4 HOH HOH 268 A HOH 141 4 HOH HOH 269 A HOH 142 4 HOH HOH 270 A HOH 144 4 HOH HOH 271 A HOH 145 4 HOH HOH 272 A HOH 146 4 HOH HOH 273 A HOH 147 4 HOH HOH 274 A HOH 148 4 HOH HOH 275 A HOH 149 4 HOH HOH 276 A HOH 151 4 HOH HOH 277 A HOH 14 4 HOH HOH 14 D HOH 19 4 HOH HOH 19 D HOH 95 4 HOH HOH 95 D HOH 127 4 HOH HOH 127 D HOH 128 4 HOH HOH 128 D HOH 131 4 HOH HOH 131 D HOH 143 4 HOH HOH 143 D HOH 150 4 HOH HOH 150 D HOH 92 4 HOH HOH 224 D n 1 38 A n 2 39 A MET 40 n 3 MET 40 A GLY 41 n 4 GLY 41 A SER 42 n 5 SER 42 A THR 43 n 6 THR 43 A ASN 44 n 7 ASN 44 A PRO 45 n 8 PRO 45 A PRO 46 n 9 PRO 46 A PRO 47 n 10 PRO 47 A PRO 48 n 11 PRO 48 A GLU 49 n 12 GLU 49 A THR 50 n 13 THR 50 A SER 51 n 14 SER 51 A ASN 52 n 15 ASN 52 A PRO 53 n 16 PRO 53 A ASN 54 n 17 ASN 54 A LYS 55 n 18 LYS 55 A PRO 56 n 19 PRO 56 A LYS 57 n 20 LYS 57 A ARG 58 n 21 ARG 58 A GLN 59 n 22 GLN 59 A THR 60 n 23 THR 60 A ASN 61 n 24 ASN 61 A GLN 62 n 25 GLN 62 A LEU 63 n 26 LEU 63 A GLN 64 n 27 GLN 64 A TYR 65 n 28 TYR 65 A LEU 66 n 29 LEU 66 A LEU 67 n 30 LEU 67 A ARG 68 n 31 ARG 68 A VAL 69 n 32 VAL 69 A VAL 70 n 33 VAL 70 A LEU 71 n 34 LEU 71 A LYS 72 n 35 LYS 72 A THR 73 n 36 THR 73 A LEU 74 n 37 LEU 74 A TRP 75 n 38 TRP 75 A LYS 76 n 39 LYS 76 A HIS 77 n 40 HIS 77 A GLN 78 n 41 GLN 78 A PHE 79 n 42 PHE 79 A ALA 80 n 43 ALA 80 A TRP 81 n 44 TRP 81 A PRO 82 n 45 PRO 82 A PHE 83 n 46 PHE 83 A GLN 84 n 47 GLN 84 A GLN 85 n 48 GLN 85 A PRO 86 n 49 PRO 86 A VAL 87 n 50 VAL 87 A ASP 88 n 51 ASP 88 A ALA 89 n 52 ALA 89 A VAL 90 n 53 VAL 90 A LYS 91 n 54 LYS 91 A LEU 92 n 55 LEU 92 A ASN 93 n 56 ASN 93 A LEU 94 n 57 LEU 94 A PRO 95 n 58 PRO 95 A ASP 96 n 59 ASP 96 A TYR 97 n 60 TYR 97 A TYR 98 n 61 TYR 98 A LYS 99 n 62 LYS 99 A ILE 100 n 63 ILE 100 A ILE 101 n 64 ILE 101 A LYS 102 n 65 LYS 102 A THR 103 n 66 THR 103 A PRO 104 n 67 PRO 104 A MET 105 n 68 MET 105 A ASP 106 n 69 ASP 106 A MET 107 n 70 MET 107 A GLY 108 n 71 GLY 108 A THR 109 n 72 THR 109 A ILE 110 n 73 ILE 110 A LYS 111 n 74 LYS 111 A LYS 112 n 75 LYS 112 A ARG 113 n 76 ARG 113 A LEU 114 n 77 LEU 114 A GLU 115 n 78 GLU 115 A ASN 116 n 79 ASN 116 A ASN 117 n 80 ASN 117 A TYR 118 n 81 TYR 118 A TYR 119 n 82 TYR 119 A TRP 120 n 83 TRP 120 A ASN 121 n 84 ASN 121 A ALA 122 n 85 ALA 122 A GLN 123 n 86 GLN 123 A GLU 124 n 87 GLU 124 A CYS 125 n 88 CYS 125 A ILE 126 n 89 ILE 126 A GLN 127 n 90 GLN 127 A ASP 128 n 91 ASP 128 A PHE 129 n 92 PHE 129 A ASN 130 n 93 ASN 130 A THR 131 n 94 THR 131 A MET 132 n 95 MET 132 A PHE 133 n 96 PHE 133 A THR 134 n 97 THR 134 A ASN 135 n 98 ASN 135 A CYS 136 n 99 CYS 136 A TYR 137 n 100 TYR 137 A ILE 138 n 101 ILE 138 A TYR 139 n 102 TYR 139 A ASN 140 n 103 ASN 140 A LYS 141 n 104 LYS 141 A PRO 142 n 105 PRO 142 A GLY 143 n 106 GLY 143 A ASP 144 n 107 ASP 144 A ASP 145 n 108 ASP 145 A ILE 146 n 109 ILE 146 A VAL 147 n 110 VAL 147 A LEU 148 n 111 LEU 148 A MET 149 n 112 MET 149 A ALA 150 n 113 ALA 150 A GLU 151 n 114 GLU 151 A ALA 152 n 115 ALA 152 A LEU 153 n 116 LEU 153 A GLU 154 n 117 GLU 154 A LYS 155 n 118 LYS 155 A LEU 156 n 119 LEU 156 A PHE 157 n 120 PHE 157 A LEU 158 n 121 LEU 158 A GLN 159 n 122 GLN 159 A LYS 160 n 123 LYS 160 A ILE 161 n 124 ILE 161 A ASN 162 n 125 ASN 162 A GLU 163 n 126 GLU 163 A LEU 164 n 127 LEU 164 A PRO 165 n 128 PRO 165 A THR 166 n 129 THR 166 A n 130 167 A n 131 168 A ALA 1 n 1 ALA 1 D THR 2 n 2 THR 2 D PRK 3 n 3 PRK 3 D ALA 4 n 4 ALA 4 D ALA 5 n 5 ALA 5 D ARG 6 n 6 ARG 6 D LYS 7 n 7 LYS 7 D n 8 8 D 0.6217 -0.1303 0.2882 2.4222 1.1500 1.6783 -0.0427 0.0013 0.0214 -0.2167 -0.0630 0.1291 -0.3039 -0.1262 0.1057 -0.0842 0.0053 -0.0324 -0.0027 0.0098 -0.0129 refined -5.9577 2.0343 7.6689 X-RAY DIFFRACTION A 40 A 166 X-RAY DIFFRACTION 1 author_defined_assembly 2 dimeric D PRK 3 N~6~-PROPANOYL-L-LYSINE B PRK 3 LYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG MET 40 A CG MET 3 1 Y 1 A SD MET 40 A SD MET 3 1 Y 1 A CE MET 40 A CE MET 3 1 Y 1 A OE1 GLN 59 A OE1 GLN 22 1 Y 1 A NE2 GLN 59 A NE2 GLN 22 1 Y 1 A CG ARG 68 A CG ARG 31 1 Y 1 A CD ARG 68 A CD ARG 31 1 Y 1 A NE ARG 68 A NE ARG 31 1 Y 1 A CZ ARG 68 A CZ ARG 31 1 Y 1 A NH1 ARG 68 A NH1 ARG 31 1 Y 1 A NH2 ARG 68 A NH2 ARG 31 1 Y 1 A CG LYS 72 A CG LYS 35 1 Y 1 A CD LYS 72 A CD LYS 35 1 Y 1 A CE LYS 72 A CE LYS 35 1 Y 1 A NZ LYS 72 A NZ LYS 35 1 Y 1 A CE LYS 76 A CE LYS 39 1 Y 1 A NZ LYS 76 A NZ LYS 39 1 Y 1 A CG LYS 99 A CG LYS 62 1 Y 1 A CD LYS 99 A CD LYS 62 1 Y 1 A CE LYS 99 A CE LYS 62 1 Y 1 A NZ LYS 99 A NZ LYS 62 1 Y 1 A CD LYS 112 A CD LYS 75 1 Y 1 A CE LYS 112 A CE LYS 75 1 Y 1 A NZ LYS 112 A NZ LYS 75 1 Y 1 A CD GLN 123 A CD GLN 86 1 Y 1 A OE1 GLN 123 A OE1 GLN 86 1 Y 1 A NE2 GLN 123 A NE2 GLN 86 1 Y 1 A CG GLN 127 A CG GLN 90 1 Y 1 A CD GLN 127 A CD GLN 90 1 Y 1 A OE1 GLN 127 A OE1 GLN 90 1 Y 1 A NE2 GLN 127 A NE2 GLN 90 1 Y 1 A CG LYS 155 A CG LYS 118 1 Y 1 A CD LYS 155 A CD LYS 118 1 Y 1 A CE LYS 155 A CE LYS 118 1 Y 1 A NZ LYS 155 A NZ LYS 118 1 Y 1 A NZ LYS 160 A NZ LYS 123 1 Y 1 D CG ARG 6 B CG ARG 6 1 Y 1 D CD ARG 6 B CD ARG 6 1 Y 1 D NE ARG 6 B NE ARG 6 1 Y 1 D CZ ARG 6 B CZ ARG 6 1 Y 1 D NH1 ARG 6 B NH1 ARG 6 1 Y 1 D NH2 ARG 6 B NH2 ARG 6 1 Y 1 A GLY 38 A GLY 1 1 Y 1 A ALA 39 A ALA 2 1 Y 1 A GLU 167 A GLU 130 1 Y 1 A GLU 168 A GLU 131 1 Y 1 D SER 8 B SER 8 1 Y 1 A A O O HOH HOH 33 239 1.74 1 A A O O HOH HOH 239 250 1.93 1 A A O O HOH HOH 211 275 1.94 1 A A O O HOH HOH 205 248 1.99 1 A A O O HOH HOH 193 234 2.03 1 A A O O HOH HOH 33 250 2.04 1 D D N O ALA HOH 1 150 2.10 1 A A OE1 O GLU HOH 151 216 2.17 1 3.09 0.50 120.30 123.39 A A A NE CZ NH1 ARG ARG ARG 113 113 113 N 1 A A CZ CE2 TYR TYR 98 98 0.078 0.013 1.381 1.459 N 1 A A CE1 CZ TYR TYR 119 119 -0.092 0.013 1.381 1.289 N 1 A A CD OE2 GLU GLU 124 124 0.067 0.011 1.252 1.319 N 1 A A O O HOH HOH 253 273 2.07 1_555 4_445 1 A D O O HOH HOH 209 224 2.17 1_555 2_455 1 A ASN 52 -160.52 96.25 1 A LEU 94 -118.70 69.65 29.685 4.84 0.00 0.00 -2.41 0.00 -2.43 0.970 0.947 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.21879 0.17206 0.17451 1.75 19.60 730 12865 12865 5.4 99.76 8.057 0.108 RANDOM 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.121 0.80 0.80 1.20 PDB ENTRY 3JVJ MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.75 19.60 151 1222 4 0 1067 0.023 0.022 1109 0.001 0.020 734 1.936 1.971 1516 1.051 3.000 1814 6.144 5.000 136 33.433 25.918 49 13.147 15.000 174 12.363 15.000 2 0.116 0.200 168 0.009 0.020 1216 0.001 0.020 200 0.232 0.200 257 0.184 0.200 702 0.200 0.200 551 0.102 0.200 493 0.316 0.200 95 0.195 0.200 18 0.202 0.200 32 0.259 0.200 27 1.226 1.500 713 0.375 1.500 259 1.790 2.000 1112 2.781 3.000 475 3.700 4.500 402 0.254 0.233 1.795 44 938 20 100.00 1.75 19.6 3MUK 13605 13605 -3.00 -3.00 0.086 1 20.1 99.7 0.532 1.75 1.80 4.2 1072 100 data collection ADSC Quantum refinement REFMAC 5.2.0019 data reduction XDS data scaling XSCALE phasing REFMAC 5.2.0019 N Crystal structure of Brd4 bromodomain 1 with propionylated histone H3-K(prop)23 1 N N 2 N N 3 N N 4 N N 4 N N A THR 60 A THR 23 HELX_P A VAL 69 A VAL 32 1 1 10 A VAL 69 A VAL 32 HELX_P A LYS 76 A LYS 39 1 2 8 A ALA 80 A ALA 43 HELX_P A GLN 84 A GLN 47 5 3 5 A ASP 96 A ASP 59 HELX_P A ILE 101 A ILE 64 1 4 6 A ASP 106 A ASP 69 HELX_P A ASN 116 A ASN 79 1 5 11 A ASN 121 A ASN 84 HELX_P A ASN 140 A ASN 103 1 6 20 A ASP 144 A ASP 107 HELX_P A ASN 162 A ASN 125 1 7 19 covale 1.328 both D THR 2 B C THR 2 1_555 D PRK 3 B N PRK 3 1_555 covale 1.340 both D PRK 3 B C PRK 3 1_555 D ALA 4 B N ALA 4 1_555 SIGNALING PROTEIN bromodomain, histone recognition, N-propionyl lysine, acylation, SIGNALING PROTEIN BRD4_MOUSE UNP 1 42 Q9ESU6 STNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE H33_HUMAN UNP 2 22 P84243 ATKAARKS 42 168 3MUK 42 168 Q9ESU6 A 1 5 131 22 29 3MUK 1 8 P84243 D 2 1 8 1 expression tag GLY 38 3MUK A Q9ESU6 UNP 1 1 expression tag ALA 39 3MUK A Q9ESU6 UNP 2 1 expression tag MET 40 3MUK A Q9ESU6 UNP 3 1 expression tag GLY 41 3MUK A Q9ESU6 UNP 4 BINDING SITE FOR RESIDUE EDO A 1 A EDO 1 Software 5 A ILE 100 A ILE 63 5 1_555 A ILE 101 A ILE 64 5 1_555 A LYS 102 A LYS 65 5 1_555 A THR 103 A THR 66 5 1_555 A ASN 135 A ASN 98 5 1_555 19 P 21 21 21