0.028399
0.000000
0.000000
0.000000
0.021273
0.000000
0.000000
0.000000
0.012804
0.00000
0.00000
0.00000
Vollmuth, F.
Geyer, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
35.213
47.008
78.101
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C9 H18 N2 O3
202.251
n
N~6~-propanoyl-L-lysine
N(6)-Propionyllysine
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
Y
152
N
C
Y
153
N
N
Y
154
N
C
Y
155
N
C
Y
156
N
N
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
S
C
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
S
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
C
N
284
N
N
N
285
N
O
N
286
S
C
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
N
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
R
C
N
351
N
O
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
N
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
Y
149
N
sing
Y
150
N
doub
Y
151
N
doub
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
Y
257
N
doub
Y
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
Y
357
N
doub
Y
358
N
sing
Y
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
Y
385
N
doub
Y
386
N
sing
Y
387
N
sing
N
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
GE
Angew.Chem.Int.Ed.Engl.
9999
1433-7851
49
6768
6772
10.1002/anie.201002724
20715035
Interaction of propionylated and butyrylated histone H3 lysine marks with Brd4 bromodomains
2010
10.2210/pdb3muk/pdb
pdb_00003muk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-11-15
MARMOSAIC 225 mm CCD
Diamond(111)
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
X10SA
SLS
1.00
SYNCHROTRON
SLS BEAMLINE X10SA
15385.665
Bromodomain-containing protein 4
bromodomain, UNP residues 42-168
1
man
polymer
890.040
peptide of Histone H3.3
histone H3 peptide, UNP residues 22-29
1
syn
polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
151
nat
water
Mitotic chromosome-associated protein, MCAP
no
no
GAMGSTNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENN
YYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE
GAMGSTNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENN
YYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE
A
polypeptide(L)
no
yes
AT(PRK)AARKS
ATXAARKS
D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Brd4, Mcap
10090
Mus musculus
562
Escherichia coli
BL21(DE3)
Plasmid
pProEx-HTb
1
1.99
38.06
VAPOR DIFFUSION, HANGING DROP
8.0
3.6M Na formate, 10% glycerol, soaked with 20-times excess of histone octapeptide, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-08-11
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2010-05-03
REL
REL
EDO
1,2-ETHANEDIOL
HOH
water
Fmoc solid phase synthesis
sample
3JVJ
PDB ENTRY 3JVJ
PDB
experimental model
EDO
1
3
EDO
EDO
1
A
HOH
2
4
HOH
HOH
2
A
HOH
3
4
HOH
HOH
3
A
HOH
4
4
HOH
HOH
4
A
HOH
5
4
HOH
HOH
5
A
HOH
6
4
HOH
HOH
6
A
HOH
7
4
HOH
HOH
7
A
HOH
8
4
HOH
HOH
8
A
HOH
9
4
HOH
HOH
9
A
HOH
10
4
HOH
HOH
10
A
HOH
11
4
HOH
HOH
11
A
HOH
12
4
HOH
HOH
12
A
HOH
13
4
HOH
HOH
13
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
26
4
HOH
HOH
26
A
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
30
4
HOH
HOH
30
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
33
4
HOH
HOH
33
A
HOH
34
4
HOH
HOH
34
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
1
4
HOH
HOH
169
A
HOH
38
4
HOH
HOH
170
A
HOH
39
4
HOH
HOH
171
A
HOH
40
4
HOH
HOH
172
A
HOH
41
4
HOH
HOH
173
A
HOH
42
4
HOH
HOH
174
A
HOH
43
4
HOH
HOH
175
A
HOH
44
4
HOH
HOH
176
A
HOH
45
4
HOH
HOH
177
A
HOH
46
4
HOH
HOH
178
A
HOH
47
4
HOH
HOH
179
A
HOH
48
4
HOH
HOH
180
A
HOH
49
4
HOH
HOH
181
A
HOH
50
4
HOH
HOH
182
A
HOH
51
4
HOH
HOH
183
A
HOH
52
4
HOH
HOH
184
A
HOH
53
4
HOH
HOH
185
A
HOH
54
4
HOH
HOH
186
A
HOH
55
4
HOH
HOH
187
A
HOH
56
4
HOH
HOH
188
A
HOH
57
4
HOH
HOH
189
A
HOH
58
4
HOH
HOH
190
A
HOH
59
4
HOH
HOH
191
A
HOH
60
4
HOH
HOH
192
A
HOH
61
4
HOH
HOH
193
A
HOH
62
4
HOH
HOH
194
A
HOH
63
4
HOH
HOH
195
A
HOH
64
4
HOH
HOH
196
A
HOH
65
4
HOH
HOH
197
A
HOH
66
4
HOH
HOH
198
A
HOH
67
4
HOH
HOH
199
A
HOH
68
4
HOH
HOH
200
A
HOH
69
4
HOH
HOH
201
A
HOH
70
4
HOH
HOH
202
A
HOH
71
4
HOH
HOH
203
A
HOH
72
4
HOH
HOH
204
A
HOH
73
4
HOH
HOH
205
A
HOH
74
4
HOH
HOH
206
A
HOH
75
4
HOH
HOH
207
A
HOH
76
4
HOH
HOH
208
A
HOH
77
4
HOH
HOH
209
A
HOH
78
4
HOH
HOH
210
A
HOH
79
4
HOH
HOH
211
A
HOH
80
4
HOH
HOH
212
A
HOH
81
4
HOH
HOH
213
A
HOH
82
4
HOH
HOH
214
A
HOH
83
4
HOH
HOH
215
A
HOH
84
4
HOH
HOH
216
A
HOH
85
4
HOH
HOH
217
A
HOH
86
4
HOH
HOH
218
A
HOH
87
4
HOH
HOH
219
A
HOH
88
4
HOH
HOH
220
A
HOH
89
4
HOH
HOH
221
A
HOH
90
4
HOH
HOH
222
A
HOH
91
4
HOH
HOH
223
A
HOH
93
4
HOH
HOH
225
A
HOH
94
4
HOH
HOH
226
A
HOH
96
4
HOH
HOH
227
A
HOH
97
4
HOH
HOH
228
A
HOH
98
4
HOH
HOH
229
A
HOH
99
4
HOH
HOH
230
A
HOH
100
4
HOH
HOH
231
A
HOH
101
4
HOH
HOH
232
A
HOH
102
4
HOH
HOH
233
A
HOH
103
4
HOH
HOH
234
A
HOH
104
4
HOH
HOH
235
A
HOH
105
4
HOH
HOH
236
A
HOH
106
4
HOH
HOH
237
A
HOH
107
4
HOH
HOH
238
A
HOH
108
4
HOH
HOH
239
A
HOH
109
4
HOH
HOH
240
A
HOH
110
4
HOH
HOH
241
A
HOH
111
4
HOH
HOH
242
A
HOH
112
4
HOH
HOH
243
A
HOH
113
4
HOH
HOH
244
A
HOH
114
4
HOH
HOH
245
A
HOH
115
4
HOH
HOH
246
A
HOH
116
4
HOH
HOH
247
A
HOH
117
4
HOH
HOH
248
A
HOH
118
4
HOH
HOH
249
A
HOH
119
4
HOH
HOH
250
A
HOH
120
4
HOH
HOH
251
A
HOH
121
4
HOH
HOH
252
A
HOH
122
4
HOH
HOH
253
A
HOH
123
4
HOH
HOH
254
A
HOH
124
4
HOH
HOH
255
A
HOH
125
4
HOH
HOH
256
A
HOH
126
4
HOH
HOH
257
A
HOH
129
4
HOH
HOH
258
A
HOH
130
4
HOH
HOH
259
A
HOH
132
4
HOH
HOH
260
A
HOH
133
4
HOH
HOH
261
A
HOH
134
4
HOH
HOH
262
A
HOH
135
4
HOH
HOH
263
A
HOH
136
4
HOH
HOH
264
A
HOH
137
4
HOH
HOH
265
A
HOH
138
4
HOH
HOH
266
A
HOH
139
4
HOH
HOH
267
A
HOH
140
4
HOH
HOH
268
A
HOH
141
4
HOH
HOH
269
A
HOH
142
4
HOH
HOH
270
A
HOH
144
4
HOH
HOH
271
A
HOH
145
4
HOH
HOH
272
A
HOH
146
4
HOH
HOH
273
A
HOH
147
4
HOH
HOH
274
A
HOH
148
4
HOH
HOH
275
A
HOH
149
4
HOH
HOH
276
A
HOH
151
4
HOH
HOH
277
A
HOH
14
4
HOH
HOH
14
D
HOH
19
4
HOH
HOH
19
D
HOH
95
4
HOH
HOH
95
D
HOH
127
4
HOH
HOH
127
D
HOH
128
4
HOH
HOH
128
D
HOH
131
4
HOH
HOH
131
D
HOH
143
4
HOH
HOH
143
D
HOH
150
4
HOH
HOH
150
D
HOH
92
4
HOH
HOH
224
D
n
1
38
A
n
2
39
A
MET
40
n
3
MET
40
A
GLY
41
n
4
GLY
41
A
SER
42
n
5
SER
42
A
THR
43
n
6
THR
43
A
ASN
44
n
7
ASN
44
A
PRO
45
n
8
PRO
45
A
PRO
46
n
9
PRO
46
A
PRO
47
n
10
PRO
47
A
PRO
48
n
11
PRO
48
A
GLU
49
n
12
GLU
49
A
THR
50
n
13
THR
50
A
SER
51
n
14
SER
51
A
ASN
52
n
15
ASN
52
A
PRO
53
n
16
PRO
53
A
ASN
54
n
17
ASN
54
A
LYS
55
n
18
LYS
55
A
PRO
56
n
19
PRO
56
A
LYS
57
n
20
LYS
57
A
ARG
58
n
21
ARG
58
A
GLN
59
n
22
GLN
59
A
THR
60
n
23
THR
60
A
ASN
61
n
24
ASN
61
A
GLN
62
n
25
GLN
62
A
LEU
63
n
26
LEU
63
A
GLN
64
n
27
GLN
64
A
TYR
65
n
28
TYR
65
A
LEU
66
n
29
LEU
66
A
LEU
67
n
30
LEU
67
A
ARG
68
n
31
ARG
68
A
VAL
69
n
32
VAL
69
A
VAL
70
n
33
VAL
70
A
LEU
71
n
34
LEU
71
A
LYS
72
n
35
LYS
72
A
THR
73
n
36
THR
73
A
LEU
74
n
37
LEU
74
A
TRP
75
n
38
TRP
75
A
LYS
76
n
39
LYS
76
A
HIS
77
n
40
HIS
77
A
GLN
78
n
41
GLN
78
A
PHE
79
n
42
PHE
79
A
ALA
80
n
43
ALA
80
A
TRP
81
n
44
TRP
81
A
PRO
82
n
45
PRO
82
A
PHE
83
n
46
PHE
83
A
GLN
84
n
47
GLN
84
A
GLN
85
n
48
GLN
85
A
PRO
86
n
49
PRO
86
A
VAL
87
n
50
VAL
87
A
ASP
88
n
51
ASP
88
A
ALA
89
n
52
ALA
89
A
VAL
90
n
53
VAL
90
A
LYS
91
n
54
LYS
91
A
LEU
92
n
55
LEU
92
A
ASN
93
n
56
ASN
93
A
LEU
94
n
57
LEU
94
A
PRO
95
n
58
PRO
95
A
ASP
96
n
59
ASP
96
A
TYR
97
n
60
TYR
97
A
TYR
98
n
61
TYR
98
A
LYS
99
n
62
LYS
99
A
ILE
100
n
63
ILE
100
A
ILE
101
n
64
ILE
101
A
LYS
102
n
65
LYS
102
A
THR
103
n
66
THR
103
A
PRO
104
n
67
PRO
104
A
MET
105
n
68
MET
105
A
ASP
106
n
69
ASP
106
A
MET
107
n
70
MET
107
A
GLY
108
n
71
GLY
108
A
THR
109
n
72
THR
109
A
ILE
110
n
73
ILE
110
A
LYS
111
n
74
LYS
111
A
LYS
112
n
75
LYS
112
A
ARG
113
n
76
ARG
113
A
LEU
114
n
77
LEU
114
A
GLU
115
n
78
GLU
115
A
ASN
116
n
79
ASN
116
A
ASN
117
n
80
ASN
117
A
TYR
118
n
81
TYR
118
A
TYR
119
n
82
TYR
119
A
TRP
120
n
83
TRP
120
A
ASN
121
n
84
ASN
121
A
ALA
122
n
85
ALA
122
A
GLN
123
n
86
GLN
123
A
GLU
124
n
87
GLU
124
A
CYS
125
n
88
CYS
125
A
ILE
126
n
89
ILE
126
A
GLN
127
n
90
GLN
127
A
ASP
128
n
91
ASP
128
A
PHE
129
n
92
PHE
129
A
ASN
130
n
93
ASN
130
A
THR
131
n
94
THR
131
A
MET
132
n
95
MET
132
A
PHE
133
n
96
PHE
133
A
THR
134
n
97
THR
134
A
ASN
135
n
98
ASN
135
A
CYS
136
n
99
CYS
136
A
TYR
137
n
100
TYR
137
A
ILE
138
n
101
ILE
138
A
TYR
139
n
102
TYR
139
A
ASN
140
n
103
ASN
140
A
LYS
141
n
104
LYS
141
A
PRO
142
n
105
PRO
142
A
GLY
143
n
106
GLY
143
A
ASP
144
n
107
ASP
144
A
ASP
145
n
108
ASP
145
A
ILE
146
n
109
ILE
146
A
VAL
147
n
110
VAL
147
A
LEU
148
n
111
LEU
148
A
MET
149
n
112
MET
149
A
ALA
150
n
113
ALA
150
A
GLU
151
n
114
GLU
151
A
ALA
152
n
115
ALA
152
A
LEU
153
n
116
LEU
153
A
GLU
154
n
117
GLU
154
A
LYS
155
n
118
LYS
155
A
LEU
156
n
119
LEU
156
A
PHE
157
n
120
PHE
157
A
LEU
158
n
121
LEU
158
A
GLN
159
n
122
GLN
159
A
LYS
160
n
123
LYS
160
A
ILE
161
n
124
ILE
161
A
ASN
162
n
125
ASN
162
A
GLU
163
n
126
GLU
163
A
LEU
164
n
127
LEU
164
A
PRO
165
n
128
PRO
165
A
THR
166
n
129
THR
166
A
n
130
167
A
n
131
168
A
ALA
1
n
1
ALA
1
D
THR
2
n
2
THR
2
D
PRK
3
n
3
PRK
3
D
ALA
4
n
4
ALA
4
D
ALA
5
n
5
ALA
5
D
ARG
6
n
6
ARG
6
D
LYS
7
n
7
LYS
7
D
n
8
8
D
0.6217
-0.1303
0.2882
2.4222
1.1500
1.6783
-0.0427
0.0013
0.0214
-0.2167
-0.0630
0.1291
-0.3039
-0.1262
0.1057
-0.0842
0.0053
-0.0324
-0.0027
0.0098
-0.0129
refined
-5.9577
2.0343
7.6689
X-RAY DIFFRACTION
A
40
A
166
X-RAY DIFFRACTION
1
author_defined_assembly
2
dimeric
D
PRK
3
N~6~-PROPANOYL-L-LYSINE
B
PRK
3
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
MET
40
A
CG
MET
3
1
Y
1
A
SD
MET
40
A
SD
MET
3
1
Y
1
A
CE
MET
40
A
CE
MET
3
1
Y
1
A
OE1
GLN
59
A
OE1
GLN
22
1
Y
1
A
NE2
GLN
59
A
NE2
GLN
22
1
Y
1
A
CG
ARG
68
A
CG
ARG
31
1
Y
1
A
CD
ARG
68
A
CD
ARG
31
1
Y
1
A
NE
ARG
68
A
NE
ARG
31
1
Y
1
A
CZ
ARG
68
A
CZ
ARG
31
1
Y
1
A
NH1
ARG
68
A
NH1
ARG
31
1
Y
1
A
NH2
ARG
68
A
NH2
ARG
31
1
Y
1
A
CG
LYS
72
A
CG
LYS
35
1
Y
1
A
CD
LYS
72
A
CD
LYS
35
1
Y
1
A
CE
LYS
72
A
CE
LYS
35
1
Y
1
A
NZ
LYS
72
A
NZ
LYS
35
1
Y
1
A
CE
LYS
76
A
CE
LYS
39
1
Y
1
A
NZ
LYS
76
A
NZ
LYS
39
1
Y
1
A
CG
LYS
99
A
CG
LYS
62
1
Y
1
A
CD
LYS
99
A
CD
LYS
62
1
Y
1
A
CE
LYS
99
A
CE
LYS
62
1
Y
1
A
NZ
LYS
99
A
NZ
LYS
62
1
Y
1
A
CD
LYS
112
A
CD
LYS
75
1
Y
1
A
CE
LYS
112
A
CE
LYS
75
1
Y
1
A
NZ
LYS
112
A
NZ
LYS
75
1
Y
1
A
CD
GLN
123
A
CD
GLN
86
1
Y
1
A
OE1
GLN
123
A
OE1
GLN
86
1
Y
1
A
NE2
GLN
123
A
NE2
GLN
86
1
Y
1
A
CG
GLN
127
A
CG
GLN
90
1
Y
1
A
CD
GLN
127
A
CD
GLN
90
1
Y
1
A
OE1
GLN
127
A
OE1
GLN
90
1
Y
1
A
NE2
GLN
127
A
NE2
GLN
90
1
Y
1
A
CG
LYS
155
A
CG
LYS
118
1
Y
1
A
CD
LYS
155
A
CD
LYS
118
1
Y
1
A
CE
LYS
155
A
CE
LYS
118
1
Y
1
A
NZ
LYS
155
A
NZ
LYS
118
1
Y
1
A
NZ
LYS
160
A
NZ
LYS
123
1
Y
1
D
CG
ARG
6
B
CG
ARG
6
1
Y
1
D
CD
ARG
6
B
CD
ARG
6
1
Y
1
D
NE
ARG
6
B
NE
ARG
6
1
Y
1
D
CZ
ARG
6
B
CZ
ARG
6
1
Y
1
D
NH1
ARG
6
B
NH1
ARG
6
1
Y
1
D
NH2
ARG
6
B
NH2
ARG
6
1
Y
1
A
GLY
38
A
GLY
1
1
Y
1
A
ALA
39
A
ALA
2
1
Y
1
A
GLU
167
A
GLU
130
1
Y
1
A
GLU
168
A
GLU
131
1
Y
1
D
SER
8
B
SER
8
1
Y
1
A
A
O
O
HOH
HOH
33
239
1.74
1
A
A
O
O
HOH
HOH
239
250
1.93
1
A
A
O
O
HOH
HOH
211
275
1.94
1
A
A
O
O
HOH
HOH
205
248
1.99
1
A
A
O
O
HOH
HOH
193
234
2.03
1
A
A
O
O
HOH
HOH
33
250
2.04
1
D
D
N
O
ALA
HOH
1
150
2.10
1
A
A
OE1
O
GLU
HOH
151
216
2.17
1
3.09
0.50
120.30
123.39
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
113
113
113
N
1
A
A
CZ
CE2
TYR
TYR
98
98
0.078
0.013
1.381
1.459
N
1
A
A
CE1
CZ
TYR
TYR
119
119
-0.092
0.013
1.381
1.289
N
1
A
A
CD
OE2
GLU
GLU
124
124
0.067
0.011
1.252
1.319
N
1
A
A
O
O
HOH
HOH
253
273
2.07
1_555
4_445
1
A
D
O
O
HOH
HOH
209
224
2.17
1_555
2_455
1
A
ASN
52
-160.52
96.25
1
A
LEU
94
-118.70
69.65
29.685
4.84
0.00
0.00
-2.41
0.00
-2.43
0.970
0.947
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.21879
0.17206
0.17451
1.75
19.60
730
12865
12865
5.4
99.76
8.057
0.108
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.121
0.80
0.80
1.20
PDB ENTRY 3JVJ
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.75
19.60
151
1222
4
0
1067
0.023
0.022
1109
0.001
0.020
734
1.936
1.971
1516
1.051
3.000
1814
6.144
5.000
136
33.433
25.918
49
13.147
15.000
174
12.363
15.000
2
0.116
0.200
168
0.009
0.020
1216
0.001
0.020
200
0.232
0.200
257
0.184
0.200
702
0.200
0.200
551
0.102
0.200
493
0.316
0.200
95
0.195
0.200
18
0.202
0.200
32
0.259
0.200
27
1.226
1.500
713
0.375
1.500
259
1.790
2.000
1112
2.781
3.000
475
3.700
4.500
402
0.254
0.233
1.795
44
938
20
100.00
1.75
19.6
3MUK
13605
13605
-3.00
-3.00
0.086
1
20.1
99.7
0.532
1.75
1.80
4.2
1072
100
data collection
ADSC
Quantum
refinement
REFMAC
5.2.0019
data reduction
XDS
data scaling
XSCALE
phasing
REFMAC
5.2.0019
N
Crystal structure of Brd4 bromodomain 1 with propionylated histone H3-K(prop)23
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
THR
60
A
THR
23
HELX_P
A
VAL
69
A
VAL
32
1
1
10
A
VAL
69
A
VAL
32
HELX_P
A
LYS
76
A
LYS
39
1
2
8
A
ALA
80
A
ALA
43
HELX_P
A
GLN
84
A
GLN
47
5
3
5
A
ASP
96
A
ASP
59
HELX_P
A
ILE
101
A
ILE
64
1
4
6
A
ASP
106
A
ASP
69
HELX_P
A
ASN
116
A
ASN
79
1
5
11
A
ASN
121
A
ASN
84
HELX_P
A
ASN
140
A
ASN
103
1
6
20
A
ASP
144
A
ASP
107
HELX_P
A
ASN
162
A
ASN
125
1
7
19
covale
1.328
both
D
THR
2
B
C
THR
2
1_555
D
PRK
3
B
N
PRK
3
1_555
covale
1.340
both
D
PRK
3
B
C
PRK
3
1_555
D
ALA
4
B
N
ALA
4
1_555
SIGNALING PROTEIN
bromodomain, histone recognition, N-propionyl lysine, acylation, SIGNALING PROTEIN
BRD4_MOUSE
UNP
1
42
Q9ESU6
STNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN
AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE
H33_HUMAN
UNP
2
22
P84243
ATKAARKS
42
168
3MUK
42
168
Q9ESU6
A
1
5
131
22
29
3MUK
1
8
P84243
D
2
1
8
1
expression tag
GLY
38
3MUK
A
Q9ESU6
UNP
1
1
expression tag
ALA
39
3MUK
A
Q9ESU6
UNP
2
1
expression tag
MET
40
3MUK
A
Q9ESU6
UNP
3
1
expression tag
GLY
41
3MUK
A
Q9ESU6
UNP
4
BINDING SITE FOR RESIDUE EDO A 1
A
EDO
1
Software
5
A
ILE
100
A
ILE
63
5
1_555
A
ILE
101
A
ILE
64
5
1_555
A
LYS
102
A
LYS
65
5
1_555
A
THR
103
A
THR
66
5
1_555
A
ASN
135
A
ASN
98
5
1_555
19
P 21 21 21