0.011376 0.000000 0.000000 0.000000 0.011102 0.000000 0.000000 0.000000 0.011255 0.00000 0.00000 0.00000 Mak, A.N.S. Lambert, A.R. Stoddard, B.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 87.906 90.074 88.850 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing UK Structure STRUE6 2005 0969-2126 18 1321 1331 10.1016/j.str.2010.07.006 20800503 Folding, DNA Recognition, and Function of GIY-YIG Endonucleases: Crystal Structures of R.Eco29kI. 2010 UK Nucleic Acids Res. NARHAD 0389 0305-1048 20 1991 1991 1579502 Eco29kI, a novel plasmid encoded restriction endonuclease from Escherichia coli. 1992 10.2210/pdb3mx1/pdb pdb_00003mx1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 1 CCD 2009-07-29 ADSC QUANTUM 315 CCD 2009-10-28 ADSC QUANTUM 315 single crystal SINGLE WAVELENGTH M x-ray 1 single crystal MAD M x-ray 1 1.0 1.0 0.9801 1.0 0.9802 1.0 0.975 1.0 5.0.1 ALS 1.0 SYNCHROTRON ALS BEAMLINE 5.0.1 5.0.2 ALS 0.9801, 0.9802, 0.975 SYNCHROTRON ALS BEAMLINE 5.0.2 26792.988 Eco29kIR 3.1.21.4 E142Q 1 man polymer 18.015 water 170 nat water Restriction endonuclease no no MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVYALYYTGHYSL YDEYSRINRLAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMIS TVQAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVYALYYTGHYSL YDEYSRINRLAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMIS TVQAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample eco29kIR 562 Escherichia coli 562 Escherichia coli BL21(DE3)/pLysS plasmid pET-15HE 1 3.28 62.52 VAPOR DIFFUSION, HANGING DROP 8.5 0.1M Tris HCl, 1.5M NaCl, 10% ethanol v/v, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif pdbx_initial_refinement_model repository Initial release Version format compliance Data collection Database references Refinement description 1 0 2010-09-08 1 1 2011-07-13 1 2 2024-02-21 1 3 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details RCSB Y RCSB 2010-05-06 REL REL HOH water MAD, phase information by PHENIX Other experimental model HOH 1 2 HOH HOH 215 A HOH 2 2 HOH HOH 216 A HOH 3 2 HOH HOH 217 A HOH 4 2 HOH HOH 218 A HOH 5 2 HOH HOH 219 A HOH 6 2 HOH HOH 220 A HOH 7 2 HOH HOH 221 A HOH 8 2 HOH HOH 222 A HOH 9 2 HOH HOH 223 A HOH 10 2 HOH HOH 224 A HOH 11 2 HOH HOH 225 A HOH 12 2 HOH HOH 226 A HOH 13 2 HOH HOH 227 A HOH 14 2 HOH HOH 228 A HOH 15 2 HOH HOH 229 A HOH 16 2 HOH HOH 230 A HOH 17 2 HOH HOH 231 A HOH 18 2 HOH HOH 232 A HOH 19 2 HOH HOH 233 A HOH 20 2 HOH HOH 234 A HOH 21 2 HOH HOH 235 A HOH 22 2 HOH HOH 236 A HOH 23 2 HOH HOH 237 A HOH 24 2 HOH HOH 238 A HOH 25 2 HOH HOH 239 A HOH 26 2 HOH HOH 240 A HOH 27 2 HOH HOH 241 A HOH 28 2 HOH HOH 242 A HOH 29 2 HOH HOH 243 A HOH 30 2 HOH HOH 244 A HOH 31 2 HOH HOH 245 A HOH 32 2 HOH HOH 246 A HOH 33 2 HOH HOH 247 A HOH 34 2 HOH HOH 248 A HOH 35 2 HOH HOH 249 A HOH 36 2 HOH HOH 250 A HOH 37 2 HOH HOH 251 A HOH 38 2 HOH HOH 252 A HOH 39 2 HOH HOH 253 A HOH 40 2 HOH HOH 254 A HOH 41 2 HOH HOH 255 A HOH 42 2 HOH HOH 256 A HOH 43 2 HOH HOH 257 A HOH 44 2 HOH HOH 258 A HOH 45 2 HOH HOH 259 A HOH 46 2 HOH HOH 260 A HOH 47 2 HOH HOH 261 A HOH 48 2 HOH HOH 262 A HOH 49 2 HOH HOH 263 A HOH 50 2 HOH HOH 264 A HOH 51 2 HOH HOH 265 A HOH 52 2 HOH HOH 266 A HOH 53 2 HOH HOH 267 A HOH 54 2 HOH HOH 268 A HOH 55 2 HOH HOH 269 A HOH 56 2 HOH HOH 270 A HOH 57 2 HOH HOH 271 A HOH 58 2 HOH HOH 272 A HOH 59 2 HOH HOH 273 A HOH 60 2 HOH HOH 274 A HOH 61 2 HOH HOH 275 A HOH 62 2 HOH HOH 276 A HOH 63 2 HOH HOH 277 A HOH 64 2 HOH HOH 278 A HOH 65 2 HOH HOH 279 A HOH 66 2 HOH HOH 280 A HOH 67 2 HOH HOH 281 A HOH 68 2 HOH HOH 282 A HOH 69 2 HOH HOH 283 A HOH 70 2 HOH HOH 284 A HOH 71 2 HOH HOH 285 A HOH 72 2 HOH HOH 286 A HOH 73 2 HOH HOH 287 A HOH 74 2 HOH HOH 288 A HOH 75 2 HOH HOH 289 A HOH 76 2 HOH HOH 290 A HOH 77 2 HOH HOH 291 A HOH 78 2 HOH HOH 292 A HOH 79 2 HOH HOH 293 A HOH 80 2 HOH HOH 294 A HOH 81 2 HOH HOH 295 A HOH 82 2 HOH HOH 296 A HOH 83 2 HOH HOH 297 A HOH 84 2 HOH HOH 298 A HOH 85 2 HOH HOH 299 A HOH 86 2 HOH HOH 300 A HOH 87 2 HOH HOH 301 A HOH 88 2 HOH HOH 302 A HOH 89 2 HOH HOH 303 A HOH 90 2 HOH HOH 304 A HOH 91 2 HOH HOH 305 A HOH 92 2 HOH HOH 306 A HOH 93 2 HOH HOH 307 A HOH 94 2 HOH HOH 308 A HOH 95 2 HOH HOH 309 A HOH 96 2 HOH HOH 310 A HOH 97 2 HOH HOH 311 A HOH 98 2 HOH HOH 312 A HOH 99 2 HOH HOH 313 A HOH 100 2 HOH HOH 314 A HOH 101 2 HOH HOH 315 A HOH 102 2 HOH HOH 316 A HOH 103 2 HOH HOH 317 A HOH 104 2 HOH HOH 318 A HOH 105 2 HOH HOH 319 A HOH 106 2 HOH HOH 320 A HOH 107 2 HOH HOH 321 A HOH 108 2 HOH HOH 322 A HOH 109 2 HOH HOH 323 A HOH 110 2 HOH HOH 324 A HOH 111 2 HOH HOH 325 A HOH 112 2 HOH HOH 326 A HOH 113 2 HOH HOH 327 A HOH 114 2 HOH HOH 328 A HOH 115 2 HOH HOH 329 A HOH 116 2 HOH HOH 330 A HOH 117 2 HOH HOH 331 A HOH 118 2 HOH HOH 332 A HOH 119 2 HOH HOH 333 A HOH 120 2 HOH HOH 334 A HOH 121 2 HOH HOH 335 A HOH 122 2 HOH HOH 336 A HOH 123 2 HOH HOH 337 A HOH 124 2 HOH HOH 338 A HOH 125 2 HOH HOH 339 A HOH 126 2 HOH HOH 340 A HOH 127 2 HOH HOH 341 A HOH 128 2 HOH HOH 342 A HOH 129 2 HOH HOH 343 A HOH 130 2 HOH HOH 344 A HOH 131 2 HOH HOH 345 A HOH 132 2 HOH HOH 346 A HOH 133 2 HOH HOH 347 A HOH 134 2 HOH HOH 348 A HOH 135 2 HOH HOH 349 A HOH 136 2 HOH HOH 350 A HOH 137 2 HOH HOH 351 A HOH 138 2 HOH HOH 352 A HOH 139 2 HOH HOH 353 A HOH 140 2 HOH HOH 354 A HOH 141 2 HOH HOH 355 A HOH 142 2 HOH HOH 356 A HOH 143 2 HOH HOH 357 A HOH 144 2 HOH HOH 358 A HOH 145 2 HOH HOH 359 A HOH 146 2 HOH HOH 360 A HOH 147 2 HOH HOH 361 A HOH 148 2 HOH HOH 362 A HOH 149 2 HOH HOH 363 A HOH 150 2 HOH HOH 364 A HOH 151 2 HOH HOH 365 A HOH 152 2 HOH HOH 366 A HOH 153 2 HOH HOH 367 A HOH 154 2 HOH HOH 368 A HOH 155 2 HOH HOH 369 A HOH 156 2 HOH HOH 370 A HOH 157 2 HOH HOH 371 A HOH 158 2 HOH HOH 372 A HOH 159 2 HOH HOH 373 A HOH 160 2 HOH HOH 374 A HOH 161 2 HOH HOH 375 A HOH 162 2 HOH HOH 376 A HOH 163 2 HOH HOH 377 A HOH 164 2 HOH HOH 378 A HOH 165 2 HOH HOH 379 A HOH 166 2 HOH HOH 380 A HOH 167 2 HOH HOH 381 A HOH 168 2 HOH HOH 382 A HOH 169 2 HOH HOH 383 A HOH 170 2 HOH HOH 384 A n 1 -20 A n 2 -19 A n 3 -18 A n 4 -17 A n 5 -16 A n 6 -15 A n 7 -14 A n 8 -13 A n 9 -12 A n 10 -11 A n 11 -10 A n 12 -9 A n 13 -8 A n 14 -7 A n 15 -6 A n 16 -5 A n 17 -4 A n 18 -3 A n 19 -2 A n 20 -1 A n 21 0 A n 22 1 A n 23 2 A ASN 3 n 24 ASN 3 A LYS 4 n 25 LYS 4 A LYS 5 n 26 LYS 5 A PHE 6 n 27 PHE 6 A ASP 7 n 28 ASP 7 A ARG 8 n 29 ARG 8 A SER 9 n 30 SER 9 A GLU 10 n 31 GLU 10 A HIS 11 n 32 HIS 11 A VAL 12 n 33 VAL 12 A TYR 13 n 34 TYR 13 A ARG 14 n 35 ARG 14 A ASN 15 n 36 ASN 15 A ASP 16 n 37 ASP 16 A SER 17 n 38 SER 17 A PHE 18 n 39 PHE 18 A LEU 19 n 40 LEU 19 A GLU 20 n 41 GLU 20 A LEU 21 n 42 LEU 21 A ILE 22 n 43 ILE 22 A LYS 23 n 44 LYS 23 A ASP 24 n 45 ASP 24 A ALA 25 n 46 ALA 25 A VAL 26 n 47 VAL 26 A ARG 27 n 48 ARG 27 A PHE 28 n 49 PHE 28 A PHE 29 n 50 PHE 29 A SER 30 n 51 SER 30 A GLY 31 n 52 GLY 31 A THR 32 n 53 THR 32 A PRO 33 n 54 PRO 33 A VAL 34 n 55 VAL 34 A HIS 35 n 56 HIS 35 A SER 36 n 57 SER 36 A LEU 37 n 58 LEU 37 A PRO 38 n 59 PRO 38 A PRO 39 n 60 PRO 39 A PRO 40 n 61 PRO 40 A GLU 41 n 62 GLU 41 A ARG 42 n 63 ARG 42 A PHE 43 n 64 PHE 43 A GLN 44 n 65 GLN 44 A GLY 45 n 66 GLY 45 A ALA 46 n 67 ALA 46 A GLY 47 n 68 GLY 47 A VAL 48 n 69 VAL 48 A TYR 49 n 70 TYR 49 A ALA 50 n 71 ALA 50 A LEU 51 n 72 LEU 51 A TYR 52 n 73 TYR 52 A TYR 53 n 74 TYR 53 A THR 54 n 75 THR 54 A GLY 55 n 76 GLY 55 A HIS 56 n 77 HIS 56 A TYR 57 n 78 TYR 57 A SER 58 n 79 SER 58 A LEU 59 n 80 LEU 59 A TYR 60 n 81 TYR 60 A ASP 61 n 82 ASP 61 A GLU 62 n 83 GLU 62 A TYR 63 n 84 TYR 63 A SER 64 n 85 SER 64 A ARG 65 n 86 ARG 65 A ILE 66 n 87 ILE 66 A ASN 67 n 88 ASN 67 A ARG 68 n 89 ARG 68 A LEU 69 n 90 LEU 69 A ALA 70 n 91 ALA 70 A TYR 71 n 92 TYR 71 A ASN 72 n 93 ASN 72 A LEU 73 n 94 LEU 73 A PRO 74 n 95 PRO 74 A ILE 75 n 96 ILE 75 A TYR 76 n 97 TYR 76 A VAL 77 n 98 VAL 77 A GLY 78 n 99 GLY 78 A LYS 79 n 100 LYS 79 A ALA 80 n 101 ALA 80 A VAL 81 n 102 VAL 81 A PRO 82 n 103 PRO 82 A ALA 83 n 104 ALA 83 A GLY 84 n 105 GLY 84 A TRP 85 n 106 TRP 85 A ARG 86 n 107 ARG 86 A GLN 87 n 108 GLN 87 A SER 88 n 109 SER 88 A ARG 89 n 110 ARG 89 A ILE 90 n 111 ILE 90 A SER 91 n 112 SER 91 A ASP 92 n 113 ASP 92 A HIS 93 n 114 HIS 93 A GLU 94 n 115 GLU 94 A THR 95 n 116 THR 95 A ARG 96 n 117 ARG 96 A ALA 97 n 118 ALA 97 A GLY 98 n 119 GLY 98 A SER 99 n 120 SER 99 A GLU 100 n 121 GLU 100 A LEU 101 n 122 LEU 101 A SER 102 n 123 SER 102 A ASN 103 n 124 ASN 103 A ARG 104 n 125 ARG 104 A ILE 105 n 126 ILE 105 A ARG 106 n 127 ARG 106 A GLU 107 n 128 GLU 107 A HIS 108 n 129 HIS 108 A GLY 109 n 130 GLY 109 A ARG 110 n 131 ARG 110 A ASN 111 n 132 ASN 111 A ILE 112 n 133 ILE 112 A ALA 113 n 134 ALA 113 A LYS 114 n 135 LYS 114 A THR 115 n 136 THR 115 A SER 116 n 137 SER 116 A ASN 117 n 138 ASN 117 A LEU 118 n 139 LEU 118 A ASP 119 n 140 ASP 119 A LEU 120 n 141 LEU 120 A CYS 121 n 142 CYS 121 A ASP 122 n 143 ASP 122 A PHE 123 n 144 PHE 123 A SER 124 n 145 SER 124 A CYS 125 n 146 CYS 125 A ARG 126 n 147 ARG 126 A PHE 127 n 148 PHE 127 A VAL 128 n 149 VAL 128 A ILE 129 n 150 ILE 129 A PHE 130 n 151 PHE 130 A GLU 131 n 152 GLU 131 A ALA 132 n 153 ALA 132 A THR 133 n 154 THR 133 A GLY 134 n 155 GLY 134 A SER 135 n 156 SER 135 A ASP 136 n 157 ASP 136 A MET 137 n 158 MET 137 A ILE 138 n 159 ILE 138 A SER 139 n 160 SER 139 A THR 140 n 161 THR 140 A VAL 141 n 162 VAL 141 A GLN 142 n 163 GLN 142 A ALA 143 n 164 ALA 143 A ALA 144 n 165 ALA 144 A LEU 145 n 166 LEU 145 A ILE 146 n 167 ILE 146 A LYS 147 n 168 LYS 147 A ILE 148 n 169 ILE 148 A TYR 149 n 170 TYR 149 A LYS 150 n 171 LYS 150 A PRO 151 n 172 PRO 151 A LEU 152 n 173 LEU 152 A TRP 153 n 174 TRP 153 A ASN 154 n 175 ASN 154 A THR 155 n 176 THR 155 A VAL 156 n 177 VAL 156 A VAL 157 n 178 VAL 157 A ASP 158 n 179 ASP 158 A GLY 159 n 180 GLY 159 A PHE 160 n 181 PHE 160 A GLY 161 n 182 GLY 161 A ASN 162 n 183 ASN 162 A HIS 163 n 184 HIS 163 A THR 164 n 185 THR 164 A PRO 165 n 186 PRO 165 A GLY 166 n 187 GLY 166 A ALA 167 n 188 ALA 167 A GLY 168 n 189 GLY 168 A ARG 169 n 190 ARG 169 A PHE 170 n 191 PHE 170 A ALA 171 n 192 ALA 171 A GLN 172 n 193 GLN 172 A ALA 173 n 194 ALA 173 A LYS 174 n 195 LYS 174 A SER 175 n 196 SER 175 A ASP 176 n 197 ASP 176 A TRP 177 n 198 TRP 177 A ASP 178 n 199 ASP 178 A VAL 179 n 200 VAL 179 A ILE 180 n 201 ILE 180 A HIS 181 n 202 HIS 181 A PRO 182 n 203 PRO 182 A GLY 183 n 204 GLY 183 A ARG 184 n 205 ARG 184 A GLU 185 n 206 GLU 185 A TRP 186 n 207 TRP 186 A ALA 187 n 208 ALA 187 A GLU 188 n 209 GLU 188 A LYS 189 n 210 LYS 189 A CYS 190 n 211 CYS 190 A THR 191 n 212 THR 191 A GLY 192 n 213 GLY 192 A VAL 193 n 214 VAL 193 A HIS 194 n 215 HIS 194 A SER 195 n 216 SER 195 A GLU 196 n 217 GLU 196 A PRO 197 n 218 PRO 197 A TYR 198 n 219 TYR 198 A PHE 199 n 220 PHE 199 A ILE 200 n 221 ILE 200 A GLU 201 n 222 GLU 201 A GLU 202 n 223 GLU 202 A ARG 203 n 224 ARG 203 A ILE 204 n 225 ILE 204 A LYS 205 n 226 LYS 205 A GLN 206 n 227 GLN 206 A TYR 207 n 228 TYR 207 A PHE 208 n 229 PHE 208 A SER 209 n 230 SER 209 A LYS 210 n 231 LYS 210 A n 232 211 A n 233 212 A n 234 213 A n 235 214 A 0.9659 -0.0543 0.3847 0.6279 0.4883 4.0157 -0.0947 -0.0395 0.2065 -0.0746 0.1030 -0.0059 -1.0060 -0.3126 -0.0083 0.2605 0.0895 0.0245 0.1151 0.0065 0.1441 refined -4.0849 -28.6984 -5.2304 X-RAY DIFFRACTION A -10 A 9999 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 2 dimeric 3410 -22 21380 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_554 -x,y,-z-1/2 crystal symmetry operation 0.0000000000 0.0000000000 -44.4250000000 A N HIS 35 A N HIS 56 A O CYS 125 A O CYS 146 A O VAL 128 A O VAL 149 A N VAL 48 A N VAL 69 A N LEU 51 A N LEU 72 A O TYR 76 A O TYR 97 1 A CB GLN 87 A CB GLN 108 1 Y 1 A CG GLN 87 A CG GLN 108 1 Y 1 A CD GLN 87 A CD GLN 108 1 Y 1 A OE1 GLN 87 A OE1 GLN 108 1 Y 1 A NE2 GLN 87 A NE2 GLN 108 1 Y 1 A CB SER 88 A CB SER 109 1 Y 1 A OG SER 88 A OG SER 109 1 Y 1 A CB ARG 89 A CB ARG 110 1 Y 1 A CG ARG 89 A CG ARG 110 1 Y 1 A CD ARG 89 A CD ARG 110 1 Y 1 A NE ARG 89 A NE ARG 110 1 Y 1 A CZ ARG 89 A CZ ARG 110 1 Y 1 A NH1 ARG 89 A NH1 ARG 110 1 Y 1 A NH2 ARG 89 A NH2 ARG 110 1 Y 1 A CB ILE 90 A CB ILE 111 1 Y 1 A CG1 ILE 90 A CG1 ILE 111 1 Y 1 A CG2 ILE 90 A CG2 ILE 111 1 Y 1 A CD1 ILE 90 A CD1 ILE 111 1 Y 1 A CB SER 91 A CB SER 112 1 Y 1 A OG SER 91 A OG SER 112 1 Y 1 A CB ASP 92 A CB ASP 113 1 Y 1 A CG ASP 92 A CG ASP 113 1 Y 1 A OD1 ASP 92 A OD1 ASP 113 1 Y 1 A OD2 ASP 92 A OD2 ASP 113 1 Y 1 A CB GLU 94 A CB GLU 115 1 Y 1 A CG GLU 94 A CG GLU 115 1 Y 1 A CD GLU 94 A CD GLU 115 1 Y 1 A OE1 GLU 94 A OE1 GLU 115 1 Y 1 A OE2 GLU 94 A OE2 GLU 115 1 Y 1 A OG1 THR 95 A OG1 THR 116 1 Y 1 A CG2 THR 95 A CG2 THR 116 1 Y 1 A CB ARG 96 A CB ARG 117 1 Y 1 A CG ARG 96 A CG ARG 117 1 Y 1 A CD ARG 96 A CD ARG 117 1 Y 1 A NE ARG 96 A NE ARG 117 1 Y 1 A CZ ARG 96 A CZ ARG 117 1 Y 1 A NH1 ARG 96 A NH1 ARG 117 1 Y 1 A NH2 ARG 96 A NH2 ARG 117 1 Y 1 A CB ALA 97 A CB ALA 118 1 Y 1 A CB ALA 167 A CB ALA 188 1 Y 1 A CB GLU 188 A CB GLU 209 1 Y 1 A CG GLU 188 A CG GLU 209 1 Y 1 A CD GLU 188 A CD GLU 209 1 Y 1 A OE1 GLU 188 A OE1 GLU 209 1 Y 1 A OE2 GLU 188 A OE2 GLU 209 1 Y 1 A CG LYS 210 A CG LYS 231 1 Y 1 A CD LYS 210 A CD LYS 231 1 Y 1 A CE LYS 210 A CE LYS 231 1 Y 1 A NZ LYS 210 A NZ LYS 231 1 Y 1 A MET -20 A MET 1 1 Y 1 A ALA -19 A ALA 2 1 Y 1 A SER -18 A SER 3 1 Y 1 A SER -17 A SER 4 1 Y 1 A HIS -16 A HIS 5 1 Y 1 A HIS -15 A HIS 6 1 Y 1 A HIS -14 A HIS 7 1 Y 1 A HIS -13 A HIS 8 1 Y 1 A HIS -12 A HIS 9 1 Y 1 A HIS -11 A HIS 10 1 Y 1 A SER -10 A SER 11 1 Y 1 A SER -9 A SER 12 1 Y 1 A GLY -8 A GLY 13 1 Y 1 A LEU -7 A LEU 14 1 Y 1 A VAL -6 A VAL 15 1 Y 1 A PRO -5 A PRO 16 1 Y 1 A ARG -4 A ARG 17 1 Y 1 A GLY -3 A GLY 18 1 Y 1 A SER -2 A SER 19 1 Y 1 A SER -1 A SER 20 1 Y 1 A MET 0 A MET 21 1 Y 1 A GLY 1 A GLY 22 1 Y 1 A HIS 2 A HIS 23 1 Y 1 A SER 211 A SER 232 1 Y 1 A ASN 212 A ASN 233 1 Y 1 A PHE 213 A PHE 234 1 Y 1 A THR 214 A THR 235 1 Y 1 A A THR GLY 191 192 149.45 1 A A CG CD GLU GLU 10 10 0.101 0.015 1.515 1.616 N 1 A A CE2 CD2 TYR TYR 13 13 0.093 0.015 1.389 1.482 N 1 A A CE1 NE2 HIS HIS 194 194 -0.086 0.011 1.317 1.231 N 1 A A CG CD2 TYR TYR 198 198 0.079 0.013 1.387 1.466 N 1 A SER 88 -176.34 45.14 1 A ASP 92 -175.98 113.76 1 A GLU 94 143.92 166.33 1 A THR 95 -57.97 -77.70 1 A ALA 132 -125.30 -97.28 1 A VAL 156 -126.18 -55.40 1 A ALA 167 36.31 105.43 1 A PHE 170 -95.34 52.40 42.060 0.62 0.00 0.00 1.97 0.00 -2.59 0.946 0.921 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.22781 0.18285 0.18507 2.30 50 791 15893 15078 5.0 98.82 10.695 0.120 RANDOM 1 THROUGHOUT MAD 0.206 0.185 0.80 0.80 1.40 Phase information by PHENIX MAXIMUM LIKELIHOOD MASK 2.30 50 170 1810 0 0 1640 0.023 0.021 1689 1.951 1.928 2285 7.659 5.000 207 34.557 22.381 84 15.522 15.000 256 14.827 15.000 14 0.139 0.200 226 0.010 0.021 1342 1.279 1.500 1023 2.346 2.000 1630 3.380 3.000 666 5.291 4.500 655 0.251 0.196 2.358 50 1035 20 92.42 2.3 62.91 3MX1 15893 15078 0.079 1,2 18.35 4.9 98.82 0.311 2.3 2.358 4.2 4.5 94.2 data collection ADSC Quantum model building PHENIX refinement REFMAC 5.5.0088 data reduction HKL-2000 data scaling SCALEPACK phasing PHENIX The structure of GIY-YIG endonuclease R.Eco29kI 1 N N 2 N N A ASP 7 A ASP 28 HELX_P A VAL 12 A VAL 33 5 1 6 A ASN 15 A ASN 36 HELX_P A GLY 31 A GLY 52 1 2 17 A TYR 57 A TYR 78 HELX_P A ASP 61 A ASP 82 5 3 5 A GLU 62 A GLU 83 HELX_P A ASN 67 A ASN 88 1 4 6 A SER 99 A SER 120 HELX_P A LYS 114 A LYS 135 1 5 16 A ASP 119 A ASP 140 HELX_P A CYS 121 A CYS 142 5 6 3 A ALA 132 A ALA 153 HELX_P A ASP 136 A ASP 157 5 7 5 A MET 137 A MET 158 HELX_P A LYS 150 A LYS 171 1 8 14 A PRO 151 A PRO 172 HELX_P A VAL 156 A VAL 177 1 9 6 A SER 175 A SER 196 HELX_P A HIS 181 A HIS 202 1 10 7 A ARG 184 A ARG 205 HELX_P A CYS 190 A CYS 211 5 11 7 A GLU 196 A GLU 217 HELX_P A LYS 210 A LYS 231 1 12 15 HYDROLASE type II restriction endonuclease, GIY-YIG endonuclease, HYDROLASE A LEU 37 A LEU 58 1 A PRO 38 A PRO 59 -9.16 A SER 88 A SER 109 1 A ARG 89 A ARG 110 1.77 A PRO 182 A PRO 203 1 A GLY 183 A GLY 204 0.44 Q46944_ECOLX UNP 1 2 Q46944 HNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVYALYYTGHYSLYDEYSRINRLAYNLPIYVGKAV PAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFG NHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT 2 214 3MX1 2 214 Q46944 A 1 23 235 1 expression tag MET -20 3MX1 A Q46944 UNP 1 1 expression tag ALA -19 3MX1 A Q46944 UNP 2 1 expression tag SER -18 3MX1 A Q46944 UNP 3 1 expression tag SER -17 3MX1 A Q46944 UNP 4 1 expression tag HIS -16 3MX1 A Q46944 UNP 5 1 expression tag HIS -15 3MX1 A Q46944 UNP 6 1 expression tag HIS -14 3MX1 A Q46944 UNP 7 1 expression tag HIS -13 3MX1 A Q46944 UNP 8 1 expression tag HIS -12 3MX1 A Q46944 UNP 9 1 expression tag HIS -11 3MX1 A Q46944 UNP 10 1 expression tag SER -10 3MX1 A Q46944 UNP 11 1 expression tag SER -9 3MX1 A Q46944 UNP 12 1 expression tag GLY -8 3MX1 A Q46944 UNP 13 1 expression tag LEU -7 3MX1 A Q46944 UNP 14 1 expression tag VAL -6 3MX1 A Q46944 UNP 15 1 expression tag PRO -5 3MX1 A Q46944 UNP 16 1 expression tag ARG -4 3MX1 A Q46944 UNP 17 1 expression tag GLY -3 3MX1 A Q46944 UNP 18 1 expression tag SER -2 3MX1 A Q46944 UNP 19 1 expression tag SER -1 3MX1 A Q46944 UNP 20 1 expression tag MET 0 3MX1 A Q46944 UNP 21 1 expression tag GLY 1 3MX1 A Q46944 UNP 22 1 GLU engineered mutation GLN 142 3MX1 A Q46944 UNP 142 163 4 anti-parallel anti-parallel anti-parallel A HIS 35 A HIS 56 A SER 36 A SER 57 A PHE 123 A PHE 144 A ILE 129 A ILE 150 A GLY 47 A GLY 68 A TYR 53 A TYR 74 A TYR 76 A TYR 97 A ALA 80 A ALA 101 20 C 2 2 21