0.005982 0.000000 0.000000 0.000000 0.005982 0.000000 0.000000 0.000000 0.005982 0.00000 0.00000 0.00000 Cappadocia, L. Brisson, N. Sygusch, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 96 90.00 90.00 90.00 167.164 167.164 167.164 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C N 86 N N N 87 N C N 88 N O N 89 N N N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N N N 111 S C N 112 N C N 113 N O N 114 N C N 115 N C N 116 N C N 117 N O N 118 N N N 119 N O N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 N C N 135 N C N 136 N C N 137 N O N 138 N O N 139 N O N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N N N 150 N C N 151 N C N 152 N O N 153 N O N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 S C N 161 N C N 162 N O N 163 N C Y 164 N C Y 165 N N Y 166 N C Y 167 N C Y 168 N N N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N O N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 S C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N O N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N C N 234 N C N 235 N N N 236 N O N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N N N 253 S C N 254 N C N 255 N O N 256 N C N 257 N C N 258 N S N 259 N C N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N N N 273 S C N 274 N C N 275 N O N 276 N C Y 277 N C Y 278 N C Y 279 N C Y 280 N C Y 281 N C Y 282 N C N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C N 300 N C N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N O N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 R C N 331 N O N 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C Y 348 N C Y 349 N C Y 350 N C Y 351 N N Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C N 381 N O N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C N 399 N C N 400 N C N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N doub N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing Y 164 N sing Y 165 N doub Y 166 N doub N 167 N sing Y 168 N sing N 169 N sing Y 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing Y 272 N doub Y 273 N sing Y 274 N sing N 275 N sing Y 276 N doub N 277 N sing Y 278 N doub N 279 N sing Y 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing Y 341 N doub Y 342 N sing Y 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N sing Y 350 N doub N 351 N sing Y 352 N doub N 353 N sing Y 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N doub N 374 N sing Y 375 N doub N 376 N sing Y 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N doub N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing US Plant Cell PLCEEW 2109 1040-4651 22 1849 1867 10.1105/tpc.109.071399 20551348 Crystal Structures of DNA-Whirly Complexes and Their Role in Arabidopsis Organelle Genome Repair. 2010 10.2210/pdb3n1i/pdb pdb_00003n1i 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2007-03-07 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 1.08 1.0 X29A NSLS 1.08 SYNCHROTRON NSLS BEAMLINE X29A 20000.715 protein StWhy2 1 man polymer ERE32 2692.778 DNA 32-mer ERE32 1 syn polymer 18.015 water 36 nat water no no MADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSL ISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHI MGWDRFTNRPLEHHHHHH MADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSL ISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHI MGWDRFTNRPLEHHHHHH A polypeptide(L) no no (DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT) TTTTTTTTT B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Potato Kennebec sample StWhy2 4113 Solanum tuberosum 469008 Escherichia coli BL21(DE3) plasmid pET21a 1 2.17 47.91 VAPOR DIFFUSION, HANGING DROP 8.0 13.5% PEG6000, 0.1M Tris, 1.0M LiCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software struct_ref_seq chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Data collection Database references Refinement description Data collection Database references Refinement description 1 0 2010-08-11 1 1 2011-07-13 1 2 2019-07-17 1 3 2023-09-06 _software.classification _software.name _software.version _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end _database_2.pdbx_DOI _database_2.pdbx_database_accession Crystal Structure of StWhy2 Crystal Structure of StWhy2-dT32 complex Crystal Structure of StWhy2-cERE32 complex Crystal Structure of StWhy2-rcERE32 complex RCSB Y RCSB 2010-05-15 REL REL HOH water DNA Synthesis sample THE SEQUENCE OF THE CRYSTALLIZED DNA IS A 32-MER OLIGONUCLEOTIDE WITH SEQUENCE TGTCATTTTTGTCATTTTTGTCATTTTTGTCA. ONLY 9 RESIDUES OF THYMIDINE WERE MODELED IN THE COORDINATES OF THE ASYMMETRIC UNIT. ACCORDING TO THE AUTHORS, THE 32-MER DNA BINDS A TETRAMER THAT INCLUDE FOUR MONOMERS OF FOUR ASYMMETRIC UNITS; THE STWHY2-DNA BINDING IS NOT SEQUENCE SPECIFIC THUS EACH TETRAMERIC PROTEIN BINDS A 32-MER DNA IN DIFFERENT SEQUENCE REGISTERS; AS A RESULT ONLY THREE OF THE FOUR DNA-BINDING SITES OF EACH TETRAMER WOULD BE PHYSICALLY OCCUPIED BY THE DNA. 1L3A PDB ENTRY 1L3A PDB experimental model HOH 1 3 HOH HOH 1 A HOH 2 3 HOH HOH 2 A HOH 3 3 HOH HOH 3 A HOH 4 3 HOH HOH 4 A HOH 5 3 HOH HOH 5 A HOH 7 3 HOH HOH 7 A HOH 8 3 HOH HOH 8 A HOH 9 3 HOH HOH 9 A HOH 10 3 HOH HOH 10 A HOH 11 3 HOH HOH 11 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 22 3 HOH HOH 22 A HOH 23 3 HOH HOH 23 A HOH 24 3 HOH HOH 24 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 28 3 HOH HOH 28 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 33 3 HOH HOH 33 A HOH 34 3 HOH HOH 34 A HOH 35 3 HOH HOH 35 A HOH 36 3 HOH HOH 36 A HOH 6 3 HOH HOH 10 B n 1 47 A n 2 48 A n 3 49 A n 4 50 A n 5 51 A n 6 52 A n 7 53 A n 8 54 A GLY 55 n 9 GLY 55 A ARG 56 n 10 ARG 56 A VAL 57 n 11 VAL 57 A PHE 58 n 12 PHE 58 A ALA 59 n 13 ALA 59 A PRO 60 n 14 PRO 60 A TYR 61 n 15 TYR 61 A SER 62 n 16 SER 62 A VAL 63 n 17 VAL 63 A PHE 64 n 18 PHE 64 A LYS 65 n 19 LYS 65 A GLY 66 n 20 GLY 66 A LYS 67 n 21 LYS 67 A ALA 68 n 22 ALA 68 A ALA 69 n 23 ALA 69 A LEU 70 n 24 LEU 70 A SER 71 n 25 SER 71 A ALA 72 n 26 ALA 72 A GLU 73 n 27 GLU 73 A PRO 74 n 28 PRO 74 A ARG 75 n 29 ARG 75 A LEU 76 n 30 LEU 76 A PRO 77 n 31 PRO 77 A THR 78 n 32 THR 78 A PHE 79 n 33 PHE 79 A ASN 80 n 34 ASN 80 A ARG 81 n 35 ARG 81 A LEU 82 n 36 LEU 82 A ASP 83 n 37 ASP 83 A SER 84 n 38 SER 84 A GLY 85 n 39 GLY 85 A GLY 86 n 40 GLY 86 A VAL 87 n 41 VAL 87 A LYS 88 n 42 LYS 88 A LEU 89 n 43 LEU 89 A ASN 90 n 44 ASN 90 A ARG 91 n 45 ARG 91 A ARG 92 n 46 ARG 92 A GLY 93 n 47 GLY 93 A VAL 94 n 48 VAL 94 A ILE 95 n 49 ILE 95 A MET 96 n 50 MET 96 A LEU 97 n 51 LEU 97 A THR 98 n 52 THR 98 A PHE 99 n 53 PHE 99 A TRP 100 n 54 TRP 100 A PRO 101 n 55 PRO 101 A SER 102 n 56 SER 102 A VAL 103 n 57 VAL 103 A GLY 104 n 58 GLY 104 A GLU 105 n 59 GLU 105 A ARG 106 n 60 ARG 106 A LYS 107 n 61 LYS 107 A TYR 108 n 62 TYR 108 A ASP 109 n 63 ASP 109 A TRP 110 n 64 TRP 110 A GLU 111 n 65 GLU 111 A LYS 112 n 66 LYS 112 A ARG 113 n 67 ARG 113 A GLN 114 n 68 GLN 114 A LEU 115 n 69 LEU 115 A PHE 116 n 70 PHE 116 A ALA 117 n 71 ALA 117 A LEU 118 n 72 LEU 118 A SER 119 n 73 SER 119 A ALA 120 n 74 ALA 120 A THR 121 n 75 THR 121 A GLU 122 n 76 GLU 122 A VAL 123 n 77 VAL 123 A GLY 124 n 78 GLY 124 A SER 125 n 79 SER 125 A LEU 126 n 80 LEU 126 A ILE 127 n 81 ILE 127 A SER 128 n 82 SER 128 A MET 129 n 83 MET 129 A GLY 130 n 84 GLY 130 A THR 131 n 85 THR 131 A ARG 132 n 86 ARG 132 A ASP 133 n 87 ASP 133 A SER 134 n 88 SER 134 A SER 135 n 89 SER 135 A GLU 136 n 90 GLU 136 A PHE 137 n 91 PHE 137 A PHE 138 n 92 PHE 138 A HIS 139 n 93 HIS 139 A ASP 140 n 94 ASP 140 A PRO 141 n 95 PRO 141 A SER 142 n 96 SER 142 A MET 143 n 97 MET 143 A LEU 144 n 98 LEU 144 A SER 145 n 99 SER 145 A SER 146 n 100 SER 146 A ASN 147 n 101 ASN 147 A ALA 148 n 102 ALA 148 A GLY 149 n 103 GLY 149 A GLN 150 n 104 GLN 150 A VAL 151 n 105 VAL 151 A ARG 152 n 106 ARG 152 A LYS 153 n 107 LYS 153 A SER 154 n 108 SER 154 A LEU 155 n 109 LEU 155 A SER 156 n 110 SER 156 A ILE 157 n 111 ILE 157 A LYS 158 n 112 LYS 158 A PRO 159 n 113 PRO 159 A ASN 160 n 114 ASN 160 A ALA 161 n 115 ALA 161 A ASP 162 n 116 ASP 162 A GLY 163 n 117 GLY 163 A SER 164 n 118 SER 164 A GLY 165 n 119 GLY 165 A TYR 166 n 120 TYR 166 A PHE 167 n 121 PHE 167 A ILE 168 n 122 ILE 168 A SER 169 n 123 SER 169 A LEU 170 n 124 LEU 170 A SER 171 n 125 SER 171 A VAL 172 n 126 VAL 172 A VAL 173 n 127 VAL 173 A ASN 174 n 128 ASN 174 A ASN 175 n 129 ASN 175 A ASN 176 n 130 ASN 176 A LEU 177 n 131 LEU 177 A LYS 178 n 132 LYS 178 A THR 179 n 133 THR 179 A ASN 180 n 134 ASN 180 A ASP 181 n 135 ASP 181 A ARG 182 n 136 ARG 182 A PHE 183 n 137 PHE 183 A THR 184 n 138 THR 184 A VAL 185 n 139 VAL 185 A PRO 186 n 140 PRO 186 A VAL 187 n 141 VAL 187 A THR 188 n 142 THR 188 A THR 189 n 143 THR 189 A ALA 190 n 144 ALA 190 A GLU 191 n 145 GLU 191 A PHE 192 n 146 PHE 192 A ALA 193 n 147 ALA 193 A VAL 194 n 148 VAL 194 A MET 195 n 149 MET 195 A ARG 196 n 150 ARG 196 A THR 197 n 151 THR 197 A ALA 198 n 152 ALA 198 A PHE 199 n 153 PHE 199 A SER 200 n 154 SER 200 A PHE 201 n 155 PHE 201 A ALA 202 n 156 ALA 202 A LEU 203 n 157 LEU 203 A PRO 204 n 158 PRO 204 A HIS 205 n 159 HIS 205 A ILE 206 n 160 ILE 206 A MET 207 n 161 MET 207 A GLY 208 n 162 GLY 208 A TRP 209 n 163 TRP 209 A ASP 210 n 164 ASP 210 A ARG 211 n 165 ARG 211 A PHE 212 n 166 PHE 212 A THR 213 n 167 THR 213 A ASN 214 n 168 ASN 214 A ARG 215 n 169 ARG 215 A n 170 216 A n 171 217 A n 172 218 A n 173 219 A n 174 220 A n 175 221 A n 176 222 A n 177 223 A n 178 224 A DT 1 n 1 DT 1 B DT 2 n 2 DT 2 B DT 3 n 3 DT 3 B DT 4 n 4 DT 4 B DT 5 n 5 DT 5 B DT 6 n 6 DT 6 B DT 7 n 7 DT 7 B DT 8 n 8 DT 8 B DT 9 n 9 DT 9 B software_defined_assembly PISA 48 48-meric author_and_software_defined_assembly PISA 8 octameric 127190 -889 179220 16740 -142 34330 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -x+1,-y+1,z crystal symmetry operation 167.1640000000 167.1640000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_654 -x+1,y,-z-1 crystal symmetry operation 167.1640000000 0.0000000000 -167.1640000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_564 x,-y+1,-z-1 crystal symmetry operation 0.0000000000 167.1640000000 -167.1640000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5_654 z+1,x,y-1 crystal symmetry operation 167.1640000000 0.0000000000 -167.1640000000 0.0000000000 0.0000000000 1.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 6_665 z+1,-x+1,-y crystal symmetry operation 167.1640000000 167.1640000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7_564 -z,-x+1,y-1 crystal symmetry operation 0.0000000000 167.1640000000 -167.1640000000 0.0000000000 0.0000000000 -1.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 8_555 -z,x,-y crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 9_564 y,z+1,x-1 crystal symmetry operation 0.0000000000 167.1640000000 -167.1640000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -1.0000000000 0.0000000000 0.0000000000 10_665 -y+1,z+1,-x crystal symmetry operation 167.1640000000 167.1640000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -1.0000000000 0.0000000000 0.0000000000 11_555 y,-z,-x crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 1.0000000000 0.0000000000 0.0000000000 12_654 -y+1,-z,x-1 crystal symmetry operation 167.1640000000 0.0000000000 -167.1640000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 13_554 y,x,-z-1 crystal symmetry operation 0.0000000000 0.0000000000 -167.1640000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 14_664 -y+1,-x+1,-z-1 crystal symmetry operation 167.1640000000 167.1640000000 -167.1640000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 15_565 y,-x+1,z crystal symmetry operation 0.0000000000 167.1640000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 16_655 -y+1,x,z crystal symmetry operation 167.1640000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 17_565 x,z+1,-y crystal symmetry operation 0.0000000000 167.1640000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 18_664 -x+1,z+1,y-1 crystal symmetry operation 167.1640000000 167.1640000000 -167.1640000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 19_655 -x+1,-z,-y crystal symmetry operation 167.1640000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 20_554 x,-z,y-1 crystal symmetry operation 0.0000000000 0.0000000000 -167.1640000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 21_655 z+1,y,-x crystal symmetry operation 167.1640000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 22_664 z+1,-y+1,x-1 crystal symmetry operation 167.1640000000 167.1640000000 -167.1640000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 23_554 -z,y,x-1 crystal symmetry operation 0.0000000000 0.0000000000 -167.1640000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 24_565 -z,-y+1,-x crystal symmetry operation 0.0000000000 167.1640000000 0.0000000000 A N VAL 63 A N VAL 17 A O LEU 70 A O LEU 24 A N ALA 69 A N ALA 23 A O TRP 100 A O TRP 54 A N LEU 97 A N LEU 51 A O PHE 116 A O PHE 70 A N ASN 80 A N ASN 34 A O LYS 88 A O LYS 42 A N HIS 139 A N HIS 93 A O LYS 153 A O LYS 107 A N LYS 158 A N LYS 112 A O PHE 167 A O PHE 121 A N TYR 166 A N TYR 120 A O VAL 187 A O VAL 141 1 A MET 47 A MET 1 1 Y 1 A ALA 48 A ALA 2 1 Y 1 A ASP 49 A ASP 3 1 Y 1 A ALA 50 A ALA 4 1 Y 1 A GLY 51 A GLY 5 1 Y 1 A LYS 52 A LYS 6 1 Y 1 A ARG 53 A ARG 7 1 Y 1 A GLU 54 A GLU 8 1 Y 1 A PRO 216 A PRO 170 1 Y 1 A LEU 217 A LEU 171 1 Y 1 A GLU 218 A GLU 172 1 Y 1 A HIS 219 A HIS 173 1 Y 1 A HIS 220 A HIS 174 1 Y 1 A HIS 221 A HIS 175 1 Y 1 A HIS 222 A HIS 176 1 Y 1 A HIS 223 A HIS 177 1 Y 1 A HIS 224 A HIS 178 1 Y 1 A ASN 90 -103.21 -92.03 1 A LEU 144 66.12 -6.88 53.56 1.0433 0.0000 0.0000 1.0433 -0.0000 1.0433 0.2618 0.2267 0.2295 2.200 32.171 755 10665 9840 7.67 92.11 0.35 RANDOM 1 Isotropic THROUGHOUT 0.06 MOLECULAR REPLACEMENT 0.80 1.00 PDB ENTRY 1L3A ML FLAT BULK SOLVENT MODEL 43.592 0.330 2.200 32.171 36 1482 0 180 1266 0.008 1495 1.099 2056 16.539 561 0.060 225 0.004 236 0.4758 0.4689 2.3701 100 1252 65.00 0.3336 0.2909 2.6085 140 1877 97.00 0.3184 0.2644 2.9858 161 1908 99.00 0.2265 0.2141 3.7608 163 1955 99.00 0.2256 0.1852 32.1742 191 2093 99.00 40.49 2.20 50 3N1I 10693 10665 0 0 0.051 1 23.1 35.9 99.8 2.20 2.28 3.8 1028 0.56 9.9 98.7 refinement PHENIX (phenix.refine) model building PHENIX refinement CNS data collection CBASS data reduction HKL-2000 data scaling HKL-2000 phasing PHENIX phasing CNS Crystal Structure of a StWhy2-ERE32 complex 1 N N 2 N N 3 N N 3 N N Authors state that the biological unit is a tetramer protein plus a 32-mer DNA molecule, as indicated as pentamer in remark 350. Please refer to remark 999 for more details on the sequences specificity of this crystal structure. A ASP 109 A ASP 63 HELX_P A ARG 113 A ARG 67 5 1 5 A SER 119 A SER 73 HELX_P A SER 128 A SER 82 1 2 10 A THR 189 A THR 143 HELX_P A MET 207 A MET 161 1 3 19 A GLY 208 A GLY 162 HELX_P A PHE 212 A PHE 166 5 4 5 DNA BINDING PROTEIN/DNA Single-stranded DNA binding protein, Plant, Whirly, Protein-DNA complex, DNA BINDING PROTEIN-DNA complex 3N1I PDB 1 1 3N1I MADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSL ISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHI MGWDRFTNRPLEHHHHHH 3N1I PDB 2 1 3N1I TTTTTTTTT 47 224 3N1I 47 224 3N1I A 1 1 178 1 9 3N1I 1 9 3N1I B 2 1 9 4 2 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 61 A TYR 15 A PHE 64 A PHE 18 A ALA 68 A ALA 22 A ARG 75 A ARG 29 A VAL 94 A VAL 48 A PRO 101 A PRO 55 A GLN 114 A GLN 68 A LEU 118 A LEU 72 A PHE 79 A PHE 33 A ARG 81 A ARG 35 A VAL 87 A VAL 41 A LEU 89 A LEU 43 A SER 135 A SER 89 A HIS 139 A HIS 93 A VAL 151 A VAL 105 A PRO 159 A PRO 113 A GLY 165 A GLY 119 A ASN 174 A ASN 128 A THR 179 A THR 133 A THR 188 A THR 142 209 F 4 3 2