0.028087
0.000000
0.000000
0.000000
0.018144
0.000000
0.000000
0.000000
0.009005
0.00000
0.00000
0.00000
Kocher, O.
Birrane, G.
Krieger, M.
Ladias, J.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
35.604
55.114
111.055
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
Y
235
N
C
Y
236
N
C
Y
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
O
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
R
C
N
289
N
O
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
N
312
N
O
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
C
N
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
Y
229
N
doub
Y
230
N
sing
Y
231
N
sing
N
232
N
sing
Y
233
N
doub
N
234
N
sing
Y
235
N
doub
N
236
N
sing
Y
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
285
34999
35010
10.1074/jbc.M110.164418
20739281
In vitro and in vivo analysis of the binding of the C terminus of the HDL receptor scavenger receptor class B, type I (SR-BI), to the PDZ1 domain of its adaptor protein PDZK1.
2010
10.2210/pdb3ngh/pdb
pdb_00003ngh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2009-06-01
ADSC QUANTUM 210
Si(111) CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
X12C
NSLS
1.1
SYNCHROTRON
NSLS BEAMLINE X12C
11838.280
PDZ domain-containing protein 1
residues 7-106
C5S
2
man
polymer
18.015
water
187
nat
water
NHERF-3, Na(+)/H(+) exchange regulatory cofactor NHE-RF3, CFTR-associated protein of 70 kDa, Na/Pi cotransporter C-terminal-associated protein 1, NaPi-Cap1, Sodium-hydrogen exchanger regulatory factor 3, Na(+)/H(+) exchanger regulatory factor 3
no
no
GPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL
VLDGDSYEKAVKNQVDLKELDQEAKL
GPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL
VLDGDSYEKAVKNQVDLKELDQEAKL
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Cap70, Nherf3, Pdzk1
10090
Mus musculus
562
Escherichia coli
C41(DE3)
PLASMID
pMal-c2x
1
2.30
46.54
VAPOR DIFFUSION, SITTING DROP
8.5
100mM Tris/HCl, 40% PEG 200, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Data collection
Database references
Refinement description
1
0
2010-08-25
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
NMR structure of mouse PDZK1 PDZ1
RCSB
Y
RCSB
2010-06-11
REL
REL
HOH
water
MOUSE SR-BI PROTEIN AS IN UNP ENTRY Q61009, RESIDUES 505-509
2EDZ
PDB
experimental model
HOH
3
2
HOH
HOH
3
A
HOH
112
2
HOH
HOH
112
A
HOH
6
2
HOH
HOH
113
A
HOH
7
2
HOH
HOH
114
A
HOH
115
2
HOH
HOH
115
A
HOH
116
2
HOH
HOH
116
A
HOH
8
2
HOH
HOH
117
A
HOH
9
2
HOH
HOH
118
A
HOH
119
2
HOH
HOH
119
A
HOH
120
2
HOH
HOH
120
A
HOH
13
2
HOH
HOH
121
A
HOH
14
2
HOH
HOH
122
A
HOH
123
2
HOH
HOH
123
A
HOH
15
2
HOH
HOH
124
A
HOH
125
2
HOH
HOH
125
A
HOH
17
2
HOH
HOH
126
A
HOH
127
2
HOH
HOH
127
A
HOH
22
2
HOH
HOH
128
A
HOH
24
2
HOH
HOH
129
A
HOH
130
2
HOH
HOH
130
A
HOH
131
2
HOH
HOH
131
A
HOH
25
2
HOH
HOH
132
A
HOH
133
2
HOH
HOH
133
A
HOH
26
2
HOH
HOH
134
A
HOH
135
2
HOH
HOH
135
A
HOH
136
2
HOH
HOH
136
A
HOH
27
2
HOH
HOH
137
A
HOH
138
2
HOH
HOH
138
A
HOH
139
2
HOH
HOH
139
A
HOH
140
2
HOH
HOH
140
A
HOH
33
2
HOH
HOH
141
A
HOH
142
2
HOH
HOH
142
A
HOH
34
2
HOH
HOH
143
A
HOH
35
2
HOH
HOH
144
A
HOH
37
2
HOH
HOH
145
A
HOH
38
2
HOH
HOH
146
A
HOH
39
2
HOH
HOH
147
A
HOH
148
2
HOH
HOH
148
A
HOH
40
2
HOH
HOH
149
A
HOH
49
2
HOH
HOH
150
A
HOH
151
2
HOH
HOH
151
A
HOH
50
2
HOH
HOH
152
A
HOH
54
2
HOH
HOH
153
A
HOH
154
2
HOH
HOH
154
A
HOH
56
2
HOH
HOH
155
A
HOH
156
2
HOH
HOH
156
A
HOH
157
2
HOH
HOH
157
A
HOH
158
2
HOH
HOH
158
A
HOH
57
2
HOH
HOH
159
A
HOH
160
2
HOH
HOH
160
A
HOH
59
2
HOH
HOH
161
A
HOH
162
2
HOH
HOH
162
A
HOH
63
2
HOH
HOH
163
A
HOH
164
2
HOH
HOH
164
A
HOH
165
2
HOH
HOH
165
A
HOH
166
2
HOH
HOH
166
A
HOH
65
2
HOH
HOH
167
A
HOH
67
2
HOH
HOH
168
A
HOH
68
2
HOH
HOH
169
A
HOH
69
2
HOH
HOH
170
A
HOH
171
2
HOH
HOH
171
A
HOH
71
2
HOH
HOH
172
A
HOH
173
2
HOH
HOH
173
A
HOH
72
2
HOH
HOH
174
A
HOH
175
2
HOH
HOH
175
A
HOH
73
2
HOH
HOH
176
A
HOH
76
2
HOH
HOH
177
A
HOH
178
2
HOH
HOH
178
A
HOH
77
2
HOH
HOH
179
A
HOH
78
2
HOH
HOH
180
A
HOH
86
2
HOH
HOH
181
A
HOH
182
2
HOH
HOH
182
A
HOH
87
2
HOH
HOH
183
A
HOH
88
2
HOH
HOH
184
A
HOH
92
2
HOH
HOH
185
A
HOH
186
2
HOH
HOH
186
A
HOH
93
2
HOH
HOH
187
A
HOH
95
2
HOH
HOH
188
A
HOH
189
2
HOH
HOH
189
A
HOH
98
2
HOH
HOH
190
A
HOH
191
2
HOH
HOH
191
A
HOH
101
2
HOH
HOH
192
A
HOH
193
2
HOH
HOH
193
A
HOH
194
2
HOH
HOH
194
A
HOH
102
2
HOH
HOH
195
A
HOH
103
2
HOH
HOH
196
A
HOH
105
2
HOH
HOH
197
A
HOH
198
2
HOH
HOH
198
A
HOH
199
2
HOH
HOH
199
A
HOH
107
2
HOH
HOH
200
A
HOH
110
2
HOH
HOH
201
A
HOH
203
2
HOH
HOH
203
A
HOH
2
2
HOH
HOH
2
B
HOH
4
2
HOH
HOH
4
B
HOH
5
2
HOH
HOH
5
B
HOH
10
2
HOH
HOH
112
B
HOH
113
2
HOH
HOH
113
B
HOH
114
2
HOH
HOH
114
B
HOH
11
2
HOH
HOH
115
B
HOH
12
2
HOH
HOH
116
B
HOH
117
2
HOH
HOH
117
B
HOH
118
2
HOH
HOH
118
B
HOH
16
2
HOH
HOH
119
B
HOH
18
2
HOH
HOH
120
B
HOH
19
2
HOH
HOH
121
B
HOH
122
2
HOH
HOH
122
B
HOH
20
2
HOH
HOH
123
B
HOH
124
2
HOH
HOH
124
B
HOH
21
2
HOH
HOH
125
B
HOH
126
2
HOH
HOH
126
B
HOH
23
2
HOH
HOH
127
B
HOH
128
2
HOH
HOH
128
B
HOH
129
2
HOH
HOH
129
B
HOH
28
2
HOH
HOH
130
B
HOH
29
2
HOH
HOH
131
B
HOH
132
2
HOH
HOH
132
B
HOH
30
2
HOH
HOH
133
B
HOH
31
2
HOH
HOH
134
B
HOH
32
2
HOH
HOH
135
B
HOH
41
2
HOH
HOH
136
B
HOH
137
2
HOH
HOH
137
B
HOH
42
2
HOH
HOH
138
B
HOH
43
2
HOH
HOH
139
B
HOH
44
2
HOH
HOH
140
B
HOH
141
2
HOH
HOH
141
B
HOH
45
2
HOH
HOH
142
B
HOH
46
2
HOH
HOH
143
B
HOH
47
2
HOH
HOH
144
B
HOH
145
2
HOH
HOH
145
B
HOH
48
2
HOH
HOH
146
B
HOH
147
2
HOH
HOH
147
B
HOH
51
2
HOH
HOH
148
B
HOH
149
2
HOH
HOH
149
B
HOH
150
2
HOH
HOH
150
B
HOH
52
2
HOH
HOH
151
B
HOH
152
2
HOH
HOH
152
B
HOH
153
2
HOH
HOH
153
B
HOH
53
2
HOH
HOH
154
B
HOH
55
2
HOH
HOH
155
B
HOH
58
2
HOH
HOH
156
B
HOH
60
2
HOH
HOH
157
B
HOH
61
2
HOH
HOH
158
B
HOH
62
2
HOH
HOH
159
B
HOH
64
2
HOH
HOH
160
B
HOH
66
2
HOH
HOH
161
B
HOH
70
2
HOH
HOH
162
B
HOH
163
2
HOH
HOH
163
B
HOH
74
2
HOH
HOH
164
B
HOH
79
2
HOH
HOH
165
B
HOH
80
2
HOH
HOH
166
B
HOH
167
2
HOH
HOH
167
B
HOH
168
2
HOH
HOH
168
B
HOH
169
2
HOH
HOH
169
B
HOH
170
2
HOH
HOH
170
B
HOH
81
2
HOH
HOH
171
B
HOH
172
2
HOH
HOH
172
B
HOH
82
2
HOH
HOH
173
B
HOH
174
2
HOH
HOH
174
B
HOH
83
2
HOH
HOH
175
B
HOH
176
2
HOH
HOH
176
B
HOH
177
2
HOH
HOH
177
B
HOH
84
2
HOH
HOH
178
B
HOH
179
2
HOH
HOH
179
B
HOH
180
2
HOH
HOH
180
B
HOH
181
2
HOH
HOH
181
B
HOH
85
2
HOH
HOH
182
B
HOH
183
2
HOH
HOH
183
B
HOH
184
2
HOH
HOH
184
B
HOH
185
2
HOH
HOH
185
B
HOH
89
2
HOH
HOH
186
B
HOH
90
2
HOH
HOH
187
B
HOH
188
2
HOH
HOH
188
B
HOH
91
2
HOH
HOH
189
B
HOH
190
2
HOH
HOH
190
B
HOH
94
2
HOH
HOH
191
B
HOH
96
2
HOH
HOH
192
B
HOH
97
2
HOH
HOH
193
B
HOH
99
2
HOH
HOH
194
B
HOH
100
2
HOH
HOH
195
B
HOH
196
2
HOH
HOH
196
B
HOH
104
2
HOH
HOH
197
B
HOH
108
2
HOH
HOH
198
B
HOH
111
2
HOH
HOH
199
B
HOH
201
2
HOH
HOH
201
B
HOH
202
2
HOH
HOH
202
B
HOH
204
2
HOH
HOH
204
B
HOH
205
2
HOH
HOH
205
B
GLY
6
n
1
GLY
6
A
PRO
7
n
2
PRO
7
A
ARG
8
n
3
ARG
8
A
GLU
9
n
4
GLU
9
A
SER
10
n
5
SER
10
A
LYS
11
n
6
LYS
11
A
LEU
12
n
7
LEU
12
A
SER
13
n
8
SER
13
A
LYS
14
n
9
LYS
14
A
GLN
15
n
10
GLN
15
A
GLU
16
n
11
GLU
16
A
GLY
17
n
12
GLY
17
A
GLN
18
n
13
GLN
18
A
ASN
19
n
14
ASN
19
A
TYR
20
n
15
TYR
20
A
GLY
21
n
16
GLY
21
A
PHE
22
n
17
PHE
22
A
PHE
23
n
18
PHE
23
A
LEU
24
n
19
LEU
24
A
ARG
25
n
20
ARG
25
A
ILE
26
n
21
ILE
26
A
GLU
27
n
22
GLU
27
A
LYS
28
n
23
LYS
28
A
ASP
29
n
24
ASP
29
A
THR
30
n
25
THR
30
A
ASP
31
n
26
ASP
31
A
GLY
32
n
27
GLY
32
A
HIS
33
n
28
HIS
33
A
LEU
34
n
29
LEU
34
A
ILE
35
n
30
ILE
35
A
ARG
36
n
31
ARG
36
A
VAL
37
n
32
VAL
37
A
ILE
38
n
33
ILE
38
A
GLU
39
n
34
GLU
39
A
GLU
40
n
35
GLU
40
A
GLY
41
n
36
GLY
41
A
SER
42
n
37
SER
42
A
PRO
43
n
38
PRO
43
A
ALA
44
n
39
ALA
44
A
GLU
45
n
40
GLU
45
A
LYS
46
n
41
LYS
46
A
ALA
47
n
42
ALA
47
A
GLY
48
n
43
GLY
48
A
LEU
49
n
44
LEU
49
A
LEU
50
n
45
LEU
50
A
ASP
51
n
46
ASP
51
A
GLY
52
n
47
GLY
52
A
ASP
53
n
48
ASP
53
A
ARG
54
n
49
ARG
54
A
VAL
55
n
50
VAL
55
A
LEU
56
n
51
LEU
56
A
ARG
57
n
52
ARG
57
A
ILE
58
n
53
ILE
58
A
ASN
59
n
54
ASN
59
A
GLY
60
n
55
GLY
60
A
VAL
61
n
56
VAL
61
A
PHE
62
n
57
PHE
62
A
VAL
63
n
58
VAL
63
A
ASP
64
n
59
ASP
64
A
LYS
65
n
60
LYS
65
A
GLU
66
n
61
GLU
66
A
GLU
67
n
62
GLU
67
A
HIS
68
n
63
HIS
68
A
ALA
69
n
64
ALA
69
A
GLN
70
n
65
GLN
70
A
VAL
71
n
66
VAL
71
A
VAL
72
n
67
VAL
72
A
GLU
73
n
68
GLU
73
A
LEU
74
n
69
LEU
74
A
VAL
75
n
70
VAL
75
A
ARG
76
n
71
ARG
76
A
LYS
77
n
72
LYS
77
A
SER
78
n
73
SER
78
A
GLY
79
n
74
GLY
79
A
ASN
80
n
75
ASN
80
A
SER
81
n
76
SER
81
A
VAL
82
n
77
VAL
82
A
THR
83
n
78
THR
83
A
LEU
84
n
79
LEU
84
A
LEU
85
n
80
LEU
85
A
VAL
86
n
81
VAL
86
A
LEU
87
n
82
LEU
87
A
ASP
88
n
83
ASP
88
A
GLY
89
n
84
GLY
89
A
ASP
90
n
85
ASP
90
A
SER
91
n
86
SER
91
A
TYR
92
n
87
TYR
92
A
GLU
93
n
88
GLU
93
A
LYS
94
n
89
LYS
94
A
ALA
95
n
90
ALA
95
A
VAL
96
n
91
VAL
96
A
LYS
97
n
92
LYS
97
A
ASN
98
n
93
ASN
98
A
GLN
99
n
94
GLN
99
A
VAL
100
n
95
VAL
100
A
ASP
101
n
96
ASP
101
A
LEU
102
n
97
LEU
102
A
LYS
103
n
98
LYS
103
A
GLU
104
n
99
GLU
104
A
LEU
105
n
100
LEU
105
A
ASP
106
n
101
ASP
106
A
GLN
107
n
102
GLN
107
A
GLU
108
n
103
GLU
108
A
ALA
109
n
104
ALA
109
A
LYS
110
n
105
LYS
110
A
LEU
111
n
106
LEU
111
A
GLY
6
n
1
GLY
6
B
PRO
7
n
2
PRO
7
B
ARG
8
n
3
ARG
8
B
GLU
9
n
4
GLU
9
B
SER
10
n
5
SER
10
B
LYS
11
n
6
LYS
11
B
LEU
12
n
7
LEU
12
B
SER
13
n
8
SER
13
B
LYS
14
n
9
LYS
14
B
GLN
15
n
10
GLN
15
B
GLU
16
n
11
GLU
16
B
GLY
17
n
12
GLY
17
B
GLN
18
n
13
GLN
18
B
ASN
19
n
14
ASN
19
B
TYR
20
n
15
TYR
20
B
GLY
21
n
16
GLY
21
B
PHE
22
n
17
PHE
22
B
PHE
23
n
18
PHE
23
B
LEU
24
n
19
LEU
24
B
ARG
25
n
20
ARG
25
B
ILE
26
n
21
ILE
26
B
GLU
27
n
22
GLU
27
B
LYS
28
n
23
LYS
28
B
ASP
29
n
24
ASP
29
B
THR
30
n
25
THR
30
B
ASP
31
n
26
ASP
31
B
GLY
32
n
27
GLY
32
B
HIS
33
n
28
HIS
33
B
LEU
34
n
29
LEU
34
B
ILE
35
n
30
ILE
35
B
ARG
36
n
31
ARG
36
B
VAL
37
n
32
VAL
37
B
ILE
38
n
33
ILE
38
B
GLU
39
n
34
GLU
39
B
GLU
40
n
35
GLU
40
B
GLY
41
n
36
GLY
41
B
SER
42
n
37
SER
42
B
PRO
43
n
38
PRO
43
B
ALA
44
n
39
ALA
44
B
GLU
45
n
40
GLU
45
B
LYS
46
n
41
LYS
46
B
ALA
47
n
42
ALA
47
B
GLY
48
n
43
GLY
48
B
LEU
49
n
44
LEU
49
B
LEU
50
n
45
LEU
50
B
ASP
51
n
46
ASP
51
B
GLY
52
n
47
GLY
52
B
ASP
53
n
48
ASP
53
B
ARG
54
n
49
ARG
54
B
VAL
55
n
50
VAL
55
B
LEU
56
n
51
LEU
56
B
ARG
57
n
52
ARG
57
B
ILE
58
n
53
ILE
58
B
ASN
59
n
54
ASN
59
B
GLY
60
n
55
GLY
60
B
VAL
61
n
56
VAL
61
B
PHE
62
n
57
PHE
62
B
VAL
63
n
58
VAL
63
B
ASP
64
n
59
ASP
64
B
LYS
65
n
60
LYS
65
B
GLU
66
n
61
GLU
66
B
GLU
67
n
62
GLU
67
B
HIS
68
n
63
HIS
68
B
ALA
69
n
64
ALA
69
B
GLN
70
n
65
GLN
70
B
VAL
71
n
66
VAL
71
B
VAL
72
n
67
VAL
72
B
GLU
73
n
68
GLU
73
B
LEU
74
n
69
LEU
74
B
VAL
75
n
70
VAL
75
B
ARG
76
n
71
ARG
76
B
LYS
77
n
72
LYS
77
B
SER
78
n
73
SER
78
B
GLY
79
n
74
GLY
79
B
ASN
80
n
75
ASN
80
B
SER
81
n
76
SER
81
B
VAL
82
n
77
VAL
82
B
THR
83
n
78
THR
83
B
LEU
84
n
79
LEU
84
B
LEU
85
n
80
LEU
85
B
VAL
86
n
81
VAL
86
B
LEU
87
n
82
LEU
87
B
ASP
88
n
83
ASP
88
B
GLY
89
n
84
GLY
89
B
ASP
90
n
85
ASP
90
B
SER
91
n
86
SER
91
B
TYR
92
n
87
TYR
92
B
GLU
93
n
88
GLU
93
B
LYS
94
n
89
LYS
94
B
ALA
95
n
90
ALA
95
B
VAL
96
n
91
VAL
96
B
LYS
97
n
92
LYS
97
B
ASN
98
n
93
ASN
98
B
GLN
99
n
94
GLN
99
B
VAL
100
n
95
VAL
100
B
ASP
101
n
96
ASP
101
B
LEU
102
n
97
LEU
102
B
LYS
103
n
98
LYS
103
B
GLU
104
n
99
GLU
104
B
LEU
105
n
100
LEU
105
B
ASP
106
n
101
ASP
106
B
GLN
107
n
102
GLN
107
B
GLU
108
n
103
GLU
108
B
ALA
109
n
104
ALA
109
B
LYS
110
n
105
LYS
110
B
LEU
111
n
106
LEU
111
B
0.5701
-0.0877
0.8374
1.1013
-0.3681
1.5369
-0.0239
0.1568
0.0893
0.0808
-0.0457
-0.0716
-0.0463
0.1046
0.0696
0.1521
0.0003
0.0045
0.1919
0.0101
0.2201
refined
32.3980
-3.2210
90.9620
X-RAY DIFFRACTION
1.1115
-0.4334
1.1835
1.2121
-0.1307
1.3843
-0.0652
0.0292
0.0793
0.0396
0.0446
0.0933
0.0342
0.0024
0.0205
0.1558
-0.0039
0.0130
0.1902
0.0115
0.2016
refined
26.3770
-3.9300
89.7560
X-RAY DIFFRACTION
-0.4222
-1.3470
-1.1809
1.0958
-2.7093
5.8104
-0.1824
0.0113
-0.1405
0.0494
0.3593
0.2417
-0.5712
-0.0321
-0.1769
0.1646
-0.0330
-0.0120
0.1994
-0.0441
0.2622
refined
20.5060
8.3450
82.6640
X-RAY DIFFRACTION
1.1069
1.9538
1.0905
2.4873
1.3113
0.6313
-0.1083
0.0600
0.2139
-0.1645
0.0182
0.2481
-0.0953
0.1864
0.0901
0.2303
-0.0140
-0.0745
0.2089
-0.0152
0.1876
refined
30.7470
7.6140
62.2800
X-RAY DIFFRACTION
2.2263
2.8643
3.5969
0.3615
3.0369
3.2109
-0.4213
-0.3222
0.7078
-0.3695
-0.3885
0.6122
0.1411
-0.1253
0.8099
0.3850
0.0763
-0.1314
0.0348
-0.1263
0.3360
refined
22.7250
3.3160
63.4720
X-RAY DIFFRACTION
-0.1002
-0.1122
-0.2516
0.4931
0.6674
0.5351
0.0188
-0.0009
0.0242
0.0855
-0.0780
0.1339
0.1381
0.0632
0.0592
0.2279
-0.0189
-0.0421
0.1784
-0.0101
0.2333
refined
22.0200
-0.9950
58.0290
X-RAY DIFFRACTION
A
6
A
40
X-RAY DIFFRACTION
1
A
41
A
92
X-RAY DIFFRACTION
2
A
93
A
111
X-RAY DIFFRACTION
3
B
6
B
25
X-RAY DIFFRACTION
4
B
26
B
67
X-RAY DIFFRACTION
5
B
68
B
111
X-RAY DIFFRACTION
6
author_and_software_defined_assembly
PISA
2
dimeric
1310
-4
12230
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-x+3/2,-y,z+1/2
crystal symmetry operation
53.4060000000
0.0000000000
55.5275000000
A
N
SER
10
A
N
SER
5
A
O
LEU
84
A
O
LEU
79
A
O
LEU
85
A
O
LEU
80
A
N
LEU
56
A
N
LEU
51
A
N
ILE
58
A
N
ILE
53
A
O
VAL
61
A
O
VAL
56
A
N
PHE
23
A
N
PHE
18
A
O
ARG
36
A
O
ARG
31
A
N
ALA
109
A
N
ALA
104
B
O
LEU
24
B
O
LEU
19
B
N
PHE
23
B
N
PHE
18
B
O
ARG
36
B
O
ARG
31
B
N
SER
10
B
N
SER
5
B
O
LEU
84
B
O
LEU
79
B
O
LEU
85
B
O
LEU
80
B
N
LEU
56
B
N
LEU
51
B
N
ILE
58
B
N
ILE
53
B
O
VAL
61
B
O
VAL
56
1
3.06
0.50
120.30
123.36
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
8
8
8
N
1
-3.42
0.50
120.30
116.88
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
8
8
8
N
1
-3.21
0.50
120.30
117.09
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
8
8
8
N
27.334
0.02
0.00
0.00
0.11
0.00
-0.13
0.953
0.937
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23763
0.19973
0.20158
0.20158
1.80
29.91
1003
19752
19752
4.8
98.88
7.595
0.105
RANDOM
1
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
0.135
0.80
0.80
1.40
2EDZ
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.80
29.91
187
1853
0
0
1666
0.022
0.022
1722
0.001
0.020
1217
1.851
1.990
2315
0.967
3.000
2987
6.209
5.000
220
44.405
25.506
89
15.274
15.000
345
18.297
15.000
13
0.123
0.200
257
0.008
0.020
1935
0.001
0.020
318
1.100
1.500
1062
0.335
1.500
444
1.887
2.000
1705
2.900
3.000
660
4.677
4.500
606
0.3180
0.2280
1.8470
63
1396
1459
20
97.0100
26.9
1.65
30.7
3NGH
26518
26518
0.0
-3.0
0.488
0.545
1
41.1
10.5
97.5
0.055
1.65
1.86
3.7
1235
0.056
5.8
91.7
data collection
CBASS
phasing
PHASER
refinement
REFMAC
5.5.0109
data reduction
HKL-2000
data scaling
HKL-2000
Molecular Analysis of the Interaction of the HDL Receptor SR-BI with the Adaptor Protein PDZK1
1
N
N
1
N
N
2
N
N
2
N
N
A
SER
42
A
SER
37
HELX_P
A
ALA
47
A
ALA
42
1
1
6
A
GLU
67
A
GLU
62
HELX_P
A
SER
78
A
SER
73
1
2
12
A
ASP
88
A
ASP
83
HELX_P
A
ASN
98
A
ASN
93
1
3
11
A
ASP
101
A
ASP
96
HELX_P
A
LEU
105
A
LEU
100
5
4
5
B
SER
42
B
SER
37
HELX_P
B
GLY
48
B
GLY
43
1
5
7
B
GLU
67
B
GLU
62
HELX_P
B
SER
78
B
SER
73
1
6
12
B
ASP
88
B
ASP
83
HELX_P
B
ASN
98
B
ASN
93
1
7
11
B
ASP
101
B
ASP
96
HELX_P
B
LEU
105
B
LEU
100
5
8
5
SIGNALING PROTEIN
PDZ domain, Adaptor protein, SR-BI, SIGNALING PROTEIN
NHRF3_MOUSE
UNP
1
7
Q9JIL4
PRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV
LDGDSYEKAVKNQVDLKELD
7
106
3NGH
7
106
Q9JIL4
A
1
2
101
7
106
3NGH
7
106
Q9JIL4
B
1
2
101
1
expression tag
GLY
6
3NGH
A
Q9JIL4
UNP
1
1
CYS
engineered mutation
SER
10
3NGH
A
Q9JIL4
UNP
10
5
1
SEE REMARK 999
GLN
107
3NGH
A
Q9JIL4
UNP
102
1
SEE REMARK 999
GLU
108
3NGH
A
Q9JIL4
UNP
103
1
SEE REMARK 999
ALA
109
3NGH
A
Q9JIL4
UNP
104
1
SEE REMARK 999
LYS
110
3NGH
A
Q9JIL4
UNP
105
1
SEE REMARK 999
LEU
111
3NGH
A
Q9JIL4
UNP
106
2
expression tag
GLY
6
3NGH
B
Q9JIL4
UNP
1
2
CYS
engineered mutation
SER
10
3NGH
B
Q9JIL4
UNP
10
5
2
SEE REMARK 999
GLN
107
3NGH
B
Q9JIL4
UNP
102
2
SEE REMARK 999
GLU
108
3NGH
B
Q9JIL4
UNP
103
2
SEE REMARK 999
ALA
109
3NGH
B
Q9JIL4
UNP
104
2
SEE REMARK 999
LYS
110
3NGH
B
Q9JIL4
UNP
105
2
SEE REMARK 999
LEU
111
3NGH
B
Q9JIL4
UNP
106
4
2
3
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
8
A
ARG
3
A
SER
13
A
SER
8
A
SER
81
A
SER
76
A
LEU
87
A
LEU
82
A
ARG
54
A
ARG
49
A
ILE
58
A
ILE
53
A
VAL
61
A
VAL
56
A
PHE
62
A
PHE
57
A
PHE
23
A
PHE
18
A
ARG
25
A
ARG
20
A
LEU
34
A
LEU
29
A
ARG
36
A
ARG
31
A
GLU
108
A
GLU
103
A
LYS
110
A
LYS
105
B
PHE
23
B
PHE
18
B
ARG
25
B
ARG
20
B
LEU
34
B
LEU
29
B
ARG
36
B
ARG
31
B
ARG
8
B
ARG
3
B
SER
13
B
SER
8
B
SER
81
B
SER
76
B
LEU
87
B
LEU
82
B
ARG
54
B
ARG
49
B
ILE
58
B
ILE
53
B
VAL
61
B
VAL
56
B
PHE
62
B
PHE
57
19
P 21 21 21