0.028087 0.000000 0.000000 0.000000 0.018144 0.000000 0.000000 0.000000 0.009005 0.00000 0.00000 0.00000 Kocher, O. Birrane, G. Krieger, M. Ladias, J.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 35.604 55.114 111.055 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C Y 235 N C Y 236 N C Y 237 N C Y 238 N C Y 239 N C Y 240 N C N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C N 258 N C N 259 N C N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N O N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 R C N 289 N O N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C N 312 N O N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C N 330 N C N 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing Y 229 N doub Y 230 N sing Y 231 N sing N 232 N sing Y 233 N doub N 234 N sing Y 235 N doub N 236 N sing Y 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing Y 298 N doub Y 299 N sing Y 300 N sing N 301 N sing Y 302 N doub N 303 N sing Y 304 N doub N 305 N sing Y 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 285 34999 35010 10.1074/jbc.M110.164418 20739281 In vitro and in vivo analysis of the binding of the C terminus of the HDL receptor scavenger receptor class B, type I (SR-BI), to the PDZ1 domain of its adaptor protein PDZK1. 2010 10.2210/pdb3ngh/pdb pdb_00003ngh 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors CCD 2009-06-01 ADSC QUANTUM 210 Si(111) CHANNEL SINGLE WAVELENGTH M x-ray 1 1.1 1.0 X12C NSLS 1.1 SYNCHROTRON NSLS BEAMLINE X12C 11838.280 PDZ domain-containing protein 1 residues 7-106 C5S 2 man polymer 18.015 water 187 nat water NHERF-3, Na(+)/H(+) exchange regulatory cofactor NHE-RF3, CFTR-associated protein of 70 kDa, Na/Pi cotransporter C-terminal-associated protein 1, NaPi-Cap1, Sodium-hydrogen exchanger regulatory factor 3, Na(+)/H(+) exchanger regulatory factor 3 no no GPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL VLDGDSYEKAVKNQVDLKELDQEAKL GPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL VLDGDSYEKAVKNQVDLKELDQEAKL A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample Cap70, Nherf3, Pdzk1 10090 Mus musculus 562 Escherichia coli C41(DE3) PLASMID pMal-c2x 1 2.30 46.54 VAPOR DIFFUSION, SITTING DROP 8.5 100mM Tris/HCl, 40% PEG 200, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K 291 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references Refinement description 1 0 2010-08-25 1 1 2011-07-13 1 2 2023-09-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details NMR structure of mouse PDZK1 PDZ1 RCSB Y RCSB 2010-06-11 REL REL HOH water MOUSE SR-BI PROTEIN AS IN UNP ENTRY Q61009, RESIDUES 505-509 2EDZ PDB experimental model HOH 3 2 HOH HOH 3 A HOH 112 2 HOH HOH 112 A HOH 6 2 HOH HOH 113 A HOH 7 2 HOH HOH 114 A HOH 115 2 HOH HOH 115 A HOH 116 2 HOH HOH 116 A HOH 8 2 HOH HOH 117 A HOH 9 2 HOH HOH 118 A HOH 119 2 HOH HOH 119 A HOH 120 2 HOH HOH 120 A HOH 13 2 HOH HOH 121 A HOH 14 2 HOH HOH 122 A HOH 123 2 HOH HOH 123 A HOH 15 2 HOH HOH 124 A HOH 125 2 HOH HOH 125 A HOH 17 2 HOH HOH 126 A HOH 127 2 HOH HOH 127 A HOH 22 2 HOH HOH 128 A HOH 24 2 HOH HOH 129 A HOH 130 2 HOH HOH 130 A HOH 131 2 HOH HOH 131 A HOH 25 2 HOH HOH 132 A HOH 133 2 HOH HOH 133 A HOH 26 2 HOH HOH 134 A HOH 135 2 HOH HOH 135 A HOH 136 2 HOH HOH 136 A HOH 27 2 HOH HOH 137 A HOH 138 2 HOH HOH 138 A HOH 139 2 HOH HOH 139 A HOH 140 2 HOH HOH 140 A HOH 33 2 HOH HOH 141 A HOH 142 2 HOH HOH 142 A HOH 34 2 HOH HOH 143 A HOH 35 2 HOH HOH 144 A HOH 37 2 HOH HOH 145 A HOH 38 2 HOH HOH 146 A HOH 39 2 HOH HOH 147 A HOH 148 2 HOH HOH 148 A HOH 40 2 HOH HOH 149 A HOH 49 2 HOH HOH 150 A HOH 151 2 HOH HOH 151 A HOH 50 2 HOH HOH 152 A HOH 54 2 HOH HOH 153 A HOH 154 2 HOH HOH 154 A HOH 56 2 HOH HOH 155 A HOH 156 2 HOH HOH 156 A HOH 157 2 HOH HOH 157 A HOH 158 2 HOH HOH 158 A HOH 57 2 HOH HOH 159 A HOH 160 2 HOH HOH 160 A HOH 59 2 HOH HOH 161 A HOH 162 2 HOH HOH 162 A HOH 63 2 HOH HOH 163 A HOH 164 2 HOH HOH 164 A HOH 165 2 HOH HOH 165 A HOH 166 2 HOH HOH 166 A HOH 65 2 HOH HOH 167 A HOH 67 2 HOH HOH 168 A HOH 68 2 HOH HOH 169 A HOH 69 2 HOH HOH 170 A HOH 171 2 HOH HOH 171 A HOH 71 2 HOH HOH 172 A HOH 173 2 HOH HOH 173 A HOH 72 2 HOH HOH 174 A HOH 175 2 HOH HOH 175 A HOH 73 2 HOH HOH 176 A HOH 76 2 HOH HOH 177 A HOH 178 2 HOH HOH 178 A HOH 77 2 HOH HOH 179 A HOH 78 2 HOH HOH 180 A HOH 86 2 HOH HOH 181 A HOH 182 2 HOH HOH 182 A HOH 87 2 HOH HOH 183 A HOH 88 2 HOH HOH 184 A HOH 92 2 HOH HOH 185 A HOH 186 2 HOH HOH 186 A HOH 93 2 HOH HOH 187 A HOH 95 2 HOH HOH 188 A HOH 189 2 HOH HOH 189 A HOH 98 2 HOH HOH 190 A HOH 191 2 HOH HOH 191 A HOH 101 2 HOH HOH 192 A HOH 193 2 HOH HOH 193 A HOH 194 2 HOH HOH 194 A HOH 102 2 HOH HOH 195 A HOH 103 2 HOH HOH 196 A HOH 105 2 HOH HOH 197 A HOH 198 2 HOH HOH 198 A HOH 199 2 HOH HOH 199 A HOH 107 2 HOH HOH 200 A HOH 110 2 HOH HOH 201 A HOH 203 2 HOH HOH 203 A HOH 2 2 HOH HOH 2 B HOH 4 2 HOH HOH 4 B HOH 5 2 HOH HOH 5 B HOH 10 2 HOH HOH 112 B HOH 113 2 HOH HOH 113 B HOH 114 2 HOH HOH 114 B HOH 11 2 HOH HOH 115 B HOH 12 2 HOH HOH 116 B HOH 117 2 HOH HOH 117 B HOH 118 2 HOH HOH 118 B HOH 16 2 HOH HOH 119 B HOH 18 2 HOH HOH 120 B HOH 19 2 HOH HOH 121 B HOH 122 2 HOH HOH 122 B HOH 20 2 HOH HOH 123 B HOH 124 2 HOH HOH 124 B HOH 21 2 HOH HOH 125 B HOH 126 2 HOH HOH 126 B HOH 23 2 HOH HOH 127 B HOH 128 2 HOH HOH 128 B HOH 129 2 HOH HOH 129 B HOH 28 2 HOH HOH 130 B HOH 29 2 HOH HOH 131 B HOH 132 2 HOH HOH 132 B HOH 30 2 HOH HOH 133 B HOH 31 2 HOH HOH 134 B HOH 32 2 HOH HOH 135 B HOH 41 2 HOH HOH 136 B HOH 137 2 HOH HOH 137 B HOH 42 2 HOH HOH 138 B HOH 43 2 HOH HOH 139 B HOH 44 2 HOH HOH 140 B HOH 141 2 HOH HOH 141 B HOH 45 2 HOH HOH 142 B HOH 46 2 HOH HOH 143 B HOH 47 2 HOH HOH 144 B HOH 145 2 HOH HOH 145 B HOH 48 2 HOH HOH 146 B HOH 147 2 HOH HOH 147 B HOH 51 2 HOH HOH 148 B HOH 149 2 HOH HOH 149 B HOH 150 2 HOH HOH 150 B HOH 52 2 HOH HOH 151 B HOH 152 2 HOH HOH 152 B HOH 153 2 HOH HOH 153 B HOH 53 2 HOH HOH 154 B HOH 55 2 HOH HOH 155 B HOH 58 2 HOH HOH 156 B HOH 60 2 HOH HOH 157 B HOH 61 2 HOH HOH 158 B HOH 62 2 HOH HOH 159 B HOH 64 2 HOH HOH 160 B HOH 66 2 HOH HOH 161 B HOH 70 2 HOH HOH 162 B HOH 163 2 HOH HOH 163 B HOH 74 2 HOH HOH 164 B HOH 79 2 HOH HOH 165 B HOH 80 2 HOH HOH 166 B HOH 167 2 HOH HOH 167 B HOH 168 2 HOH HOH 168 B HOH 169 2 HOH HOH 169 B HOH 170 2 HOH HOH 170 B HOH 81 2 HOH HOH 171 B HOH 172 2 HOH HOH 172 B HOH 82 2 HOH HOH 173 B HOH 174 2 HOH HOH 174 B HOH 83 2 HOH HOH 175 B HOH 176 2 HOH HOH 176 B HOH 177 2 HOH HOH 177 B HOH 84 2 HOH HOH 178 B HOH 179 2 HOH HOH 179 B HOH 180 2 HOH HOH 180 B HOH 181 2 HOH HOH 181 B HOH 85 2 HOH HOH 182 B HOH 183 2 HOH HOH 183 B HOH 184 2 HOH HOH 184 B HOH 185 2 HOH HOH 185 B HOH 89 2 HOH HOH 186 B HOH 90 2 HOH HOH 187 B HOH 188 2 HOH HOH 188 B HOH 91 2 HOH HOH 189 B HOH 190 2 HOH HOH 190 B HOH 94 2 HOH HOH 191 B HOH 96 2 HOH HOH 192 B HOH 97 2 HOH HOH 193 B HOH 99 2 HOH HOH 194 B HOH 100 2 HOH HOH 195 B HOH 196 2 HOH HOH 196 B HOH 104 2 HOH HOH 197 B HOH 108 2 HOH HOH 198 B HOH 111 2 HOH HOH 199 B HOH 201 2 HOH HOH 201 B HOH 202 2 HOH HOH 202 B HOH 204 2 HOH HOH 204 B HOH 205 2 HOH HOH 205 B GLY 6 n 1 GLY 6 A PRO 7 n 2 PRO 7 A ARG 8 n 3 ARG 8 A GLU 9 n 4 GLU 9 A SER 10 n 5 SER 10 A LYS 11 n 6 LYS 11 A LEU 12 n 7 LEU 12 A SER 13 n 8 SER 13 A LYS 14 n 9 LYS 14 A GLN 15 n 10 GLN 15 A GLU 16 n 11 GLU 16 A GLY 17 n 12 GLY 17 A GLN 18 n 13 GLN 18 A ASN 19 n 14 ASN 19 A TYR 20 n 15 TYR 20 A GLY 21 n 16 GLY 21 A PHE 22 n 17 PHE 22 A PHE 23 n 18 PHE 23 A LEU 24 n 19 LEU 24 A ARG 25 n 20 ARG 25 A ILE 26 n 21 ILE 26 A GLU 27 n 22 GLU 27 A LYS 28 n 23 LYS 28 A ASP 29 n 24 ASP 29 A THR 30 n 25 THR 30 A ASP 31 n 26 ASP 31 A GLY 32 n 27 GLY 32 A HIS 33 n 28 HIS 33 A LEU 34 n 29 LEU 34 A ILE 35 n 30 ILE 35 A ARG 36 n 31 ARG 36 A VAL 37 n 32 VAL 37 A ILE 38 n 33 ILE 38 A GLU 39 n 34 GLU 39 A GLU 40 n 35 GLU 40 A GLY 41 n 36 GLY 41 A SER 42 n 37 SER 42 A PRO 43 n 38 PRO 43 A ALA 44 n 39 ALA 44 A GLU 45 n 40 GLU 45 A LYS 46 n 41 LYS 46 A ALA 47 n 42 ALA 47 A GLY 48 n 43 GLY 48 A LEU 49 n 44 LEU 49 A LEU 50 n 45 LEU 50 A ASP 51 n 46 ASP 51 A GLY 52 n 47 GLY 52 A ASP 53 n 48 ASP 53 A ARG 54 n 49 ARG 54 A VAL 55 n 50 VAL 55 A LEU 56 n 51 LEU 56 A ARG 57 n 52 ARG 57 A ILE 58 n 53 ILE 58 A ASN 59 n 54 ASN 59 A GLY 60 n 55 GLY 60 A VAL 61 n 56 VAL 61 A PHE 62 n 57 PHE 62 A VAL 63 n 58 VAL 63 A ASP 64 n 59 ASP 64 A LYS 65 n 60 LYS 65 A GLU 66 n 61 GLU 66 A GLU 67 n 62 GLU 67 A HIS 68 n 63 HIS 68 A ALA 69 n 64 ALA 69 A GLN 70 n 65 GLN 70 A VAL 71 n 66 VAL 71 A VAL 72 n 67 VAL 72 A GLU 73 n 68 GLU 73 A LEU 74 n 69 LEU 74 A VAL 75 n 70 VAL 75 A ARG 76 n 71 ARG 76 A LYS 77 n 72 LYS 77 A SER 78 n 73 SER 78 A GLY 79 n 74 GLY 79 A ASN 80 n 75 ASN 80 A SER 81 n 76 SER 81 A VAL 82 n 77 VAL 82 A THR 83 n 78 THR 83 A LEU 84 n 79 LEU 84 A LEU 85 n 80 LEU 85 A VAL 86 n 81 VAL 86 A LEU 87 n 82 LEU 87 A ASP 88 n 83 ASP 88 A GLY 89 n 84 GLY 89 A ASP 90 n 85 ASP 90 A SER 91 n 86 SER 91 A TYR 92 n 87 TYR 92 A GLU 93 n 88 GLU 93 A LYS 94 n 89 LYS 94 A ALA 95 n 90 ALA 95 A VAL 96 n 91 VAL 96 A LYS 97 n 92 LYS 97 A ASN 98 n 93 ASN 98 A GLN 99 n 94 GLN 99 A VAL 100 n 95 VAL 100 A ASP 101 n 96 ASP 101 A LEU 102 n 97 LEU 102 A LYS 103 n 98 LYS 103 A GLU 104 n 99 GLU 104 A LEU 105 n 100 LEU 105 A ASP 106 n 101 ASP 106 A GLN 107 n 102 GLN 107 A GLU 108 n 103 GLU 108 A ALA 109 n 104 ALA 109 A LYS 110 n 105 LYS 110 A LEU 111 n 106 LEU 111 A GLY 6 n 1 GLY 6 B PRO 7 n 2 PRO 7 B ARG 8 n 3 ARG 8 B GLU 9 n 4 GLU 9 B SER 10 n 5 SER 10 B LYS 11 n 6 LYS 11 B LEU 12 n 7 LEU 12 B SER 13 n 8 SER 13 B LYS 14 n 9 LYS 14 B GLN 15 n 10 GLN 15 B GLU 16 n 11 GLU 16 B GLY 17 n 12 GLY 17 B GLN 18 n 13 GLN 18 B ASN 19 n 14 ASN 19 B TYR 20 n 15 TYR 20 B GLY 21 n 16 GLY 21 B PHE 22 n 17 PHE 22 B PHE 23 n 18 PHE 23 B LEU 24 n 19 LEU 24 B ARG 25 n 20 ARG 25 B ILE 26 n 21 ILE 26 B GLU 27 n 22 GLU 27 B LYS 28 n 23 LYS 28 B ASP 29 n 24 ASP 29 B THR 30 n 25 THR 30 B ASP 31 n 26 ASP 31 B GLY 32 n 27 GLY 32 B HIS 33 n 28 HIS 33 B LEU 34 n 29 LEU 34 B ILE 35 n 30 ILE 35 B ARG 36 n 31 ARG 36 B VAL 37 n 32 VAL 37 B ILE 38 n 33 ILE 38 B GLU 39 n 34 GLU 39 B GLU 40 n 35 GLU 40 B GLY 41 n 36 GLY 41 B SER 42 n 37 SER 42 B PRO 43 n 38 PRO 43 B ALA 44 n 39 ALA 44 B GLU 45 n 40 GLU 45 B LYS 46 n 41 LYS 46 B ALA 47 n 42 ALA 47 B GLY 48 n 43 GLY 48 B LEU 49 n 44 LEU 49 B LEU 50 n 45 LEU 50 B ASP 51 n 46 ASP 51 B GLY 52 n 47 GLY 52 B ASP 53 n 48 ASP 53 B ARG 54 n 49 ARG 54 B VAL 55 n 50 VAL 55 B LEU 56 n 51 LEU 56 B ARG 57 n 52 ARG 57 B ILE 58 n 53 ILE 58 B ASN 59 n 54 ASN 59 B GLY 60 n 55 GLY 60 B VAL 61 n 56 VAL 61 B PHE 62 n 57 PHE 62 B VAL 63 n 58 VAL 63 B ASP 64 n 59 ASP 64 B LYS 65 n 60 LYS 65 B GLU 66 n 61 GLU 66 B GLU 67 n 62 GLU 67 B HIS 68 n 63 HIS 68 B ALA 69 n 64 ALA 69 B GLN 70 n 65 GLN 70 B VAL 71 n 66 VAL 71 B VAL 72 n 67 VAL 72 B GLU 73 n 68 GLU 73 B LEU 74 n 69 LEU 74 B VAL 75 n 70 VAL 75 B ARG 76 n 71 ARG 76 B LYS 77 n 72 LYS 77 B SER 78 n 73 SER 78 B GLY 79 n 74 GLY 79 B ASN 80 n 75 ASN 80 B SER 81 n 76 SER 81 B VAL 82 n 77 VAL 82 B THR 83 n 78 THR 83 B LEU 84 n 79 LEU 84 B LEU 85 n 80 LEU 85 B VAL 86 n 81 VAL 86 B LEU 87 n 82 LEU 87 B ASP 88 n 83 ASP 88 B GLY 89 n 84 GLY 89 B ASP 90 n 85 ASP 90 B SER 91 n 86 SER 91 B TYR 92 n 87 TYR 92 B GLU 93 n 88 GLU 93 B LYS 94 n 89 LYS 94 B ALA 95 n 90 ALA 95 B VAL 96 n 91 VAL 96 B LYS 97 n 92 LYS 97 B ASN 98 n 93 ASN 98 B GLN 99 n 94 GLN 99 B VAL 100 n 95 VAL 100 B ASP 101 n 96 ASP 101 B LEU 102 n 97 LEU 102 B LYS 103 n 98 LYS 103 B GLU 104 n 99 GLU 104 B LEU 105 n 100 LEU 105 B ASP 106 n 101 ASP 106 B GLN 107 n 102 GLN 107 B GLU 108 n 103 GLU 108 B ALA 109 n 104 ALA 109 B LYS 110 n 105 LYS 110 B LEU 111 n 106 LEU 111 B 0.5701 -0.0877 0.8374 1.1013 -0.3681 1.5369 -0.0239 0.1568 0.0893 0.0808 -0.0457 -0.0716 -0.0463 0.1046 0.0696 0.1521 0.0003 0.0045 0.1919 0.0101 0.2201 refined 32.3980 -3.2210 90.9620 X-RAY DIFFRACTION 1.1115 -0.4334 1.1835 1.2121 -0.1307 1.3843 -0.0652 0.0292 0.0793 0.0396 0.0446 0.0933 0.0342 0.0024 0.0205 0.1558 -0.0039 0.0130 0.1902 0.0115 0.2016 refined 26.3770 -3.9300 89.7560 X-RAY DIFFRACTION -0.4222 -1.3470 -1.1809 1.0958 -2.7093 5.8104 -0.1824 0.0113 -0.1405 0.0494 0.3593 0.2417 -0.5712 -0.0321 -0.1769 0.1646 -0.0330 -0.0120 0.1994 -0.0441 0.2622 refined 20.5060 8.3450 82.6640 X-RAY DIFFRACTION 1.1069 1.9538 1.0905 2.4873 1.3113 0.6313 -0.1083 0.0600 0.2139 -0.1645 0.0182 0.2481 -0.0953 0.1864 0.0901 0.2303 -0.0140 -0.0745 0.2089 -0.0152 0.1876 refined 30.7470 7.6140 62.2800 X-RAY DIFFRACTION 2.2263 2.8643 3.5969 0.3615 3.0369 3.2109 -0.4213 -0.3222 0.7078 -0.3695 -0.3885 0.6122 0.1411 -0.1253 0.8099 0.3850 0.0763 -0.1314 0.0348 -0.1263 0.3360 refined 22.7250 3.3160 63.4720 X-RAY DIFFRACTION -0.1002 -0.1122 -0.2516 0.4931 0.6674 0.5351 0.0188 -0.0009 0.0242 0.0855 -0.0780 0.1339 0.1381 0.0632 0.0592 0.2279 -0.0189 -0.0421 0.1784 -0.0101 0.2333 refined 22.0200 -0.9950 58.0290 X-RAY DIFFRACTION A 6 A 40 X-RAY DIFFRACTION 1 A 41 A 92 X-RAY DIFFRACTION 2 A 93 A 111 X-RAY DIFFRACTION 3 B 6 B 25 X-RAY DIFFRACTION 4 B 26 B 67 X-RAY DIFFRACTION 5 B 68 B 111 X-RAY DIFFRACTION 6 author_and_software_defined_assembly PISA 2 dimeric 1310 -4 12230 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -x+3/2,-y,z+1/2 crystal symmetry operation 53.4060000000 0.0000000000 55.5275000000 A N SER 10 A N SER 5 A O LEU 84 A O LEU 79 A O LEU 85 A O LEU 80 A N LEU 56 A N LEU 51 A N ILE 58 A N ILE 53 A O VAL 61 A O VAL 56 A N PHE 23 A N PHE 18 A O ARG 36 A O ARG 31 A N ALA 109 A N ALA 104 B O LEU 24 B O LEU 19 B N PHE 23 B N PHE 18 B O ARG 36 B O ARG 31 B N SER 10 B N SER 5 B O LEU 84 B O LEU 79 B O LEU 85 B O LEU 80 B N LEU 56 B N LEU 51 B N ILE 58 B N ILE 53 B O VAL 61 B O VAL 56 1 3.06 0.50 120.30 123.36 A A A NE CZ NH1 ARG ARG ARG 8 8 8 N 1 -3.42 0.50 120.30 116.88 A A A NE CZ NH2 ARG ARG ARG 8 8 8 N 1 -3.21 0.50 120.30 117.09 B B B NE CZ NH2 ARG ARG ARG 8 8 8 N 27.334 0.02 0.00 0.00 0.11 0.00 -0.13 0.953 0.937 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23763 0.19973 0.20158 0.20158 1.80 29.91 1003 19752 19752 4.8 98.88 7.595 0.105 RANDOM 1 THROUGHOUT 0 0 MOLECULAR REPLACEMENT 0.135 0.80 0.80 1.40 2EDZ MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.80 29.91 187 1853 0 0 1666 0.022 0.022 1722 0.001 0.020 1217 1.851 1.990 2315 0.967 3.000 2987 6.209 5.000 220 44.405 25.506 89 15.274 15.000 345 18.297 15.000 13 0.123 0.200 257 0.008 0.020 1935 0.001 0.020 318 1.100 1.500 1062 0.335 1.500 444 1.887 2.000 1705 2.900 3.000 660 4.677 4.500 606 0.3180 0.2280 1.8470 63 1396 1459 20 97.0100 26.9 1.65 30.7 3NGH 26518 26518 0.0 -3.0 0.488 0.545 1 41.1 10.5 97.5 0.055 1.65 1.86 3.7 1235 0.056 5.8 91.7 data collection CBASS phasing PHASER refinement REFMAC 5.5.0109 data reduction HKL-2000 data scaling HKL-2000 Molecular Analysis of the Interaction of the HDL Receptor SR-BI with the Adaptor Protein PDZK1 1 N N 1 N N 2 N N 2 N N A SER 42 A SER 37 HELX_P A ALA 47 A ALA 42 1 1 6 A GLU 67 A GLU 62 HELX_P A SER 78 A SER 73 1 2 12 A ASP 88 A ASP 83 HELX_P A ASN 98 A ASN 93 1 3 11 A ASP 101 A ASP 96 HELX_P A LEU 105 A LEU 100 5 4 5 B SER 42 B SER 37 HELX_P B GLY 48 B GLY 43 1 5 7 B GLU 67 B GLU 62 HELX_P B SER 78 B SER 73 1 6 12 B ASP 88 B ASP 83 HELX_P B ASN 98 B ASN 93 1 7 11 B ASP 101 B ASP 96 HELX_P B LEU 105 B LEU 100 5 8 5 SIGNALING PROTEIN PDZ domain, Adaptor protein, SR-BI, SIGNALING PROTEIN NHRF3_MOUSE UNP 1 7 Q9JIL4 PRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV LDGDSYEKAVKNQVDLKELD 7 106 3NGH 7 106 Q9JIL4 A 1 2 101 7 106 3NGH 7 106 Q9JIL4 B 1 2 101 1 expression tag GLY 6 3NGH A Q9JIL4 UNP 1 1 CYS engineered mutation SER 10 3NGH A Q9JIL4 UNP 10 5 1 SEE REMARK 999 GLN 107 3NGH A Q9JIL4 UNP 102 1 SEE REMARK 999 GLU 108 3NGH A Q9JIL4 UNP 103 1 SEE REMARK 999 ALA 109 3NGH A Q9JIL4 UNP 104 1 SEE REMARK 999 LYS 110 3NGH A Q9JIL4 UNP 105 1 SEE REMARK 999 LEU 111 3NGH A Q9JIL4 UNP 106 2 expression tag GLY 6 3NGH B Q9JIL4 UNP 1 2 CYS engineered mutation SER 10 3NGH B Q9JIL4 UNP 10 5 2 SEE REMARK 999 GLN 107 3NGH B Q9JIL4 UNP 102 2 SEE REMARK 999 GLU 108 3NGH B Q9JIL4 UNP 103 2 SEE REMARK 999 ALA 109 3NGH B Q9JIL4 UNP 104 2 SEE REMARK 999 LYS 110 3NGH B Q9JIL4 UNP 105 2 SEE REMARK 999 LEU 111 3NGH B Q9JIL4 UNP 106 4 2 3 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 8 A ARG 3 A SER 13 A SER 8 A SER 81 A SER 76 A LEU 87 A LEU 82 A ARG 54 A ARG 49 A ILE 58 A ILE 53 A VAL 61 A VAL 56 A PHE 62 A PHE 57 A PHE 23 A PHE 18 A ARG 25 A ARG 20 A LEU 34 A LEU 29 A ARG 36 A ARG 31 A GLU 108 A GLU 103 A LYS 110 A LYS 105 B PHE 23 B PHE 18 B ARG 25 B ARG 20 B LEU 34 B LEU 29 B ARG 36 B ARG 31 B ARG 8 B ARG 3 B SER 13 B SER 8 B SER 81 B SER 76 B LEU 87 B LEU 82 B ARG 54 B ARG 49 B ILE 58 B ILE 53 B VAL 61 B VAL 56 B PHE 62 B PHE 57 19 P 21 21 21