0.008864
0.005118
0.000000
0.000000
0.010235
0.000000
0.000000
0.000000
0.008656
0.000000
0.000000
0.000000
Guan, R.
Xiao, R.
Acton, T.
Jiang, M.
Roth, M.
Montelione, G.T.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
36
90.000
90.000
120.000
112.818
112.818
115.528
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Proteins
PSFGEY
0867
1097-0134
85
647
656
10.1002/prot.25245
28066922
X-ray crystal structure of the N-terminal region of Moloney murine leukemia virus integrase and its implications for viral DNA recognition.
2017
10.2210/pdb3nnq/pdb
pdb_00003nnq
100
1
CCD
2008-10-24
MAD
M
x-ray
1
0.97917
1.0
0.97940
1.0
0.96863
1.0
X4A
NSLS
0.97917, 0.97940, 0.96863
SYNCHROTRON
NSLS BEAMLINE X4A
13707.008
N-terminal domain of Moloney murine leukemia virus integrase
N-terminal domain
2
man
polymer
65.409
ZINC ION
2
syn
non-polymer
59.044
ACETATE ION
2
syn
non-polymer
18.015
water
36
nat
water
Integrase p46
no
yes
(MSE)IENSSPYTSEHFHYTVTDIKDLTKLGAIYDKTKKYWVYQGKPV(MSE)PDQFTFELLDFLHQLTHLSFSK(MSE)
KALLERSHSPYY(MSE)LNRDRTLKNITETCKACAQVNASKSLEHHHHHH
MIENSSPYTSEHFHYTVTDIKDLTKLGAIYDKTKKYWVYQGKPVMPDQFTFELLDFLHQLTHLSFSKMKALLERSHSPYY
MLNRDRTLKNITETCKACAQVNASKSLEHHHHHH
A,B
OR3
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
MoMLV
sample
gag-pol
11801
Moloney murine leukemia virus
469008
Escherichia coli
BL21(DE3)
plasmid
pET21
1
2.58
52.34
VAPOR DIFFUSION, HANGING DROP
5.0
2.0 M Sodium Malonate, 0.1 M Sodium Acetate,0.05% Anapoe X-305, pH 5.0, vapor diffusion, hanging drop, temperature 298K
298
Northeast Structural Genomics Consortium
NESG
PSI, Protein Structure Initiative
software
citation
database_2
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_ncs_dom_lim
struct_site
repository
Initial release
Version format compliance
Database references
Refinement description
Database references
Derived calculations
Refinement description
1
0
2010-07-14
1
1
2011-07-13
1
2
2017-02-22
1
3
2017-11-08
1
4
2023-07-26
_citation.journal_volume
_citation.page_first
_citation.page_last
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2010-06-24
REL
REL
ZN
ZINC ION
ACT
ACETATE ION
HOH
water
ZN
201
2
ZN
ZN
201
A
ACT
1
3
ACT
ACT
115
A
ZN
201
2
ZN
ZN
201
B
ACT
2
3
ACT
ACT
115
B
HOH
26
4
HOH
HOH
116
A
HOH
30
4
HOH
HOH
117
A
HOH
31
4
HOH
HOH
118
A
HOH
32
4
HOH
HOH
119
A
HOH
33
4
HOH
HOH
120
A
HOH
34
4
HOH
HOH
121
A
HOH
40
4
HOH
HOH
122
A
HOH
43
4
HOH
HOH
123
A
HOH
2
4
HOH
HOH
124
A
HOH
3
4
HOH
HOH
125
A
HOH
5
4
HOH
HOH
126
A
HOH
8
4
HOH
HOH
127
A
HOH
9
4
HOH
HOH
128
A
HOH
10
4
HOH
HOH
129
A
HOH
11
4
HOH
HOH
130
A
HOH
1
4
HOH
HOH
131
A
HOH
13
4
HOH
HOH
132
A
HOH
14
4
HOH
HOH
133
A
HOH
16
4
HOH
HOH
134
A
HOH
17
4
HOH
HOH
135
A
HOH
18
4
HOH
HOH
136
A
HOH
19
4
HOH
HOH
137
A
HOH
20
4
HOH
HOH
138
A
HOH
21
4
HOH
HOH
139
A
HOH
4
4
HOH
HOH
116
B
HOH
6
4
HOH
HOH
117
B
HOH
7
4
HOH
HOH
118
B
HOH
15
4
HOH
HOH
119
B
HOH
22
4
HOH
HOH
120
B
HOH
23
4
HOH
HOH
121
B
HOH
24
4
HOH
HOH
122
B
HOH
27
4
HOH
HOH
123
B
HOH
28
4
HOH
HOH
124
B
HOH
36
4
HOH
HOH
125
B
HOH
37
4
HOH
HOH
126
B
HOH
41
4
HOH
HOH
127
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
HIS
12
n
12
HIS
12
A
PHE
13
n
13
PHE
13
A
HIS
14
n
14
HIS
14
A
TYR
15
n
15
TYR
15
A
THR
16
n
16
THR
16
A
VAL
17
n
17
VAL
17
A
THR
18
n
18
THR
18
A
ASP
19
n
19
ASP
19
A
ILE
20
n
20
ILE
20
A
LYS
21
n
21
LYS
21
A
ASP
22
n
22
ASP
22
A
LEU
23
n
23
LEU
23
A
THR
24
n
24
THR
24
A
LYS
25
n
25
LYS
25
A
LEU
26
n
26
LEU
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ILE
29
n
29
ILE
29
A
TYR
30
n
30
TYR
30
A
ASP
31
n
31
ASP
31
A
LYS
32
n
32
LYS
32
A
THR
33
n
33
THR
33
A
LYS
34
n
34
LYS
34
A
LYS
35
n
35
LYS
35
A
TYR
36
n
36
TYR
36
A
TRP
37
n
37
TRP
37
A
VAL
38
n
38
VAL
38
A
TYR
39
n
39
TYR
39
A
GLN
40
n
40
GLN
40
A
GLY
41
n
41
GLY
41
A
LYS
42
n
42
LYS
42
A
PRO
43
n
43
PRO
43
A
VAL
44
n
44
VAL
44
A
MSE
45
n
45
MSE
45
A
PRO
46
n
46
PRO
46
A
ASP
47
n
47
ASP
47
A
GLN
48
n
48
GLN
48
A
PHE
49
n
49
PHE
49
A
THR
50
n
50
THR
50
A
PHE
51
n
51
PHE
51
A
GLU
52
n
52
GLU
52
A
LEU
53
n
53
LEU
53
A
LEU
54
n
54
LEU
54
A
ASP
55
n
55
ASP
55
A
PHE
56
n
56
PHE
56
A
LEU
57
n
57
LEU
57
A
HIS
58
n
58
HIS
58
A
GLN
59
n
59
GLN
59
A
LEU
60
n
60
LEU
60
A
THR
61
n
61
THR
61
A
HIS
62
n
62
HIS
62
A
LEU
63
n
63
LEU
63
A
SER
64
n
64
SER
64
A
PHE
65
n
65
PHE
65
A
SER
66
n
66
SER
66
A
LYS
67
n
67
LYS
67
A
MSE
68
n
68
MSE
68
A
LYS
69
n
69
LYS
69
A
ALA
70
n
70
ALA
70
A
LEU
71
n
71
LEU
71
A
LEU
72
n
72
LEU
72
A
GLU
73
n
73
GLU
73
A
ARG
74
n
74
ARG
74
A
SER
75
n
75
SER
75
A
HIS
76
n
76
HIS
76
A
SER
77
n
77
SER
77
A
PRO
78
n
78
PRO
78
A
TYR
79
n
79
TYR
79
A
TYR
80
n
80
TYR
80
A
MSE
81
n
81
MSE
81
A
LEU
82
n
82
LEU
82
A
ASN
83
n
83
ASN
83
A
ARG
84
n
84
ARG
84
A
ASP
85
n
85
ASP
85
A
ARG
86
n
86
ARG
86
A
THR
87
n
87
THR
87
A
LEU
88
n
88
LEU
88
A
LYS
89
n
89
LYS
89
A
ASN
90
n
90
ASN
90
A
ILE
91
n
91
ILE
91
A
THR
92
n
92
THR
92
A
GLU
93
n
93
GLU
93
A
THR
94
n
94
THR
94
A
CYS
95
n
95
CYS
95
A
LYS
96
n
96
LYS
96
A
ALA
97
n
97
ALA
97
A
CYS
98
n
98
CYS
98
A
ALA
99
n
99
ALA
99
A
GLN
100
n
100
GLN
100
A
VAL
101
n
101
VAL
101
A
ASN
102
n
102
ASN
102
A
ALA
103
n
103
ALA
103
A
SER
104
n
104
SER
104
A
LYS
105
n
105
LYS
105
A
SER
106
n
106
SER
106
A
n
107
107
A
n
108
108
A
n
109
109
A
n
110
110
A
n
111
111
A
n
112
112
A
n
113
113
A
n
114
114
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
n
10
10
B
n
11
11
B
HIS
12
n
12
HIS
12
B
PHE
13
n
13
PHE
13
B
HIS
14
n
14
HIS
14
B
TYR
15
n
15
TYR
15
B
THR
16
n
16
THR
16
B
VAL
17
n
17
VAL
17
B
THR
18
n
18
THR
18
B
ASP
19
n
19
ASP
19
B
ILE
20
n
20
ILE
20
B
LYS
21
n
21
LYS
21
B
ASP
22
n
22
ASP
22
B
LEU
23
n
23
LEU
23
B
THR
24
n
24
THR
24
B
LYS
25
n
25
LYS
25
B
LEU
26
n
26
LEU
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ILE
29
n
29
ILE
29
B
TYR
30
n
30
TYR
30
B
ASP
31
n
31
ASP
31
B
LYS
32
n
32
LYS
32
B
THR
33
n
33
THR
33
B
LYS
34
n
34
LYS
34
B
LYS
35
n
35
LYS
35
B
TYR
36
n
36
TYR
36
B
TRP
37
n
37
TRP
37
B
VAL
38
n
38
VAL
38
B
TYR
39
n
39
TYR
39
B
GLN
40
n
40
GLN
40
B
GLY
41
n
41
GLY
41
B
LYS
42
n
42
LYS
42
B
PRO
43
n
43
PRO
43
B
VAL
44
n
44
VAL
44
B
MSE
45
n
45
MSE
45
B
PRO
46
n
46
PRO
46
B
ASP
47
n
47
ASP
47
B
GLN
48
n
48
GLN
48
B
PHE
49
n
49
PHE
49
B
THR
50
n
50
THR
50
B
PHE
51
n
51
PHE
51
B
GLU
52
n
52
GLU
52
B
LEU
53
n
53
LEU
53
B
LEU
54
n
54
LEU
54
B
ASP
55
n
55
ASP
55
B
PHE
56
n
56
PHE
56
B
LEU
57
n
57
LEU
57
B
HIS
58
n
58
HIS
58
B
GLN
59
n
59
GLN
59
B
LEU
60
n
60
LEU
60
B
THR
61
n
61
THR
61
B
HIS
62
n
62
HIS
62
B
LEU
63
n
63
LEU
63
B
SER
64
n
64
SER
64
B
PHE
65
n
65
PHE
65
B
SER
66
n
66
SER
66
B
LYS
67
n
67
LYS
67
B
MSE
68
n
68
MSE
68
B
LYS
69
n
69
LYS
69
B
ALA
70
n
70
ALA
70
B
LEU
71
n
71
LEU
71
B
LEU
72
n
72
LEU
72
B
GLU
73
n
73
GLU
73
B
ARG
74
n
74
ARG
74
B
SER
75
n
75
SER
75
B
HIS
76
n
76
HIS
76
B
SER
77
n
77
SER
77
B
PRO
78
n
78
PRO
78
B
TYR
79
n
79
TYR
79
B
TYR
80
n
80
TYR
80
B
MSE
81
n
81
MSE
81
B
LEU
82
n
82
LEU
82
B
ASN
83
n
83
ASN
83
B
ARG
84
n
84
ARG
84
B
ASP
85
n
85
ASP
85
B
ARG
86
n
86
ARG
86
B
THR
87
n
87
THR
87
B
LEU
88
n
88
LEU
88
B
LYS
89
n
89
LYS
89
B
ASN
90
n
90
ASN
90
B
ILE
91
n
91
ILE
91
B
THR
92
n
92
THR
92
B
GLU
93
n
93
GLU
93
B
THR
94
n
94
THR
94
B
CYS
95
n
95
CYS
95
B
LYS
96
n
96
LYS
96
B
ALA
97
n
97
ALA
97
B
CYS
98
n
98
CYS
98
B
ALA
99
n
99
ALA
99
B
GLN
100
n
100
GLN
100
B
VAL
101
n
101
VAL
101
B
ASN
102
n
102
ASN
102
B
ALA
103
n
103
ALA
103
B
SER
104
n
104
SER
104
B
LYS
105
n
105
LYS
105
B
SER
106
n
106
SER
106
B
n
107
107
B
n
108
108
B
n
109
109
B
n
110
110
B
n
111
111
B
n
112
112
B
n
113
113
B
n
114
114
B
0.3048
0.1310
-0.0972
0.5822
-0.3563
0.3986
0.3150
-0.4332
0.7309
0.2706
0.3043
-0.2965
-0.3942
-0.0563
0.2568
0.1463
0.0896
0.1260
0.6774
-0.4002
0.4821
refined
-31.1161
-20.6544
23.5604
X-RAY DIFFRACTION
0.3001
0.1759
-0.1967
0.7879
-0.4916
0.3207
0.2510
0.7394
-0.1844
-0.3199
-0.3588
-0.7932
0.1152
-0.3588
-0.0209
0.3102
0.0220
0.1384
0.9028
-0.4470
0.6654
refined
0.7430
-34.6497
6.9312
X-RAY DIFFRACTION
A
12
A
201
X-RAY DIFFRACTION
1
chain A
B
12
B
201
X-RAY DIFFRACTION
2
chain B
software_defined_assembly
PISA
4
tetrameric
4800
-42
23930
A
HIS
58
A
NE2
HIS
58
1_555
A
ZN
201
C
ZN
ZN
1_555
A
HIS
62
A
ND1
HIS
62
1_555
114.5
A
HIS
58
A
NE2
HIS
58
1_555
A
ZN
201
C
ZN
ZN
1_555
A
CYS
95
A
SG
CYS
95
1_555
100.3
A
HIS
62
A
ND1
HIS
62
1_555
A
ZN
201
C
ZN
ZN
1_555
A
CYS
95
A
SG
CYS
95
1_555
98.7
A
HIS
58
A
NE2
HIS
58
1_555
A
ZN
201
C
ZN
ZN
1_555
A
CYS
98
A
SG
CYS
98
1_555
94.8
A
HIS
62
A
ND1
HIS
62
1_555
A
ZN
201
C
ZN
ZN
1_555
A
CYS
98
A
SG
CYS
98
1_555
132.7
A
CYS
95
A
SG
CYS
95
1_555
A
ZN
201
C
ZN
ZN
1_555
A
CYS
98
A
SG
CYS
98
1_555
112.2
B
HIS
58
B
NE2
HIS
58
1_555
B
ZN
201
E
ZN
ZN
1_555
B
HIS
62
B
ND1
HIS
62
1_555
111.6
B
HIS
58
B
NE2
HIS
58
1_555
B
ZN
201
E
ZN
ZN
1_555
B
CYS
95
B
SG
CYS
95
1_555
97.1
B
HIS
62
B
ND1
HIS
62
1_555
B
ZN
201
E
ZN
ZN
1_555
B
CYS
95
B
SG
CYS
95
1_555
96.5
B
HIS
58
B
NE2
HIS
58
1_555
B
ZN
201
E
ZN
ZN
1_555
B
CYS
98
B
SG
CYS
98
1_555
95.1
B
HIS
62
B
ND1
HIS
62
1_555
B
ZN
201
E
ZN
ZN
1_555
B
CYS
98
B
SG
CYS
98
1_555
136.7
B
CYS
95
B
SG
CYS
95
1_555
B
ZN
201
E
ZN
ZN
1_555
B
CYS
98
B
SG
CYS
98
1_555
113.7
A
MSE
45
SELENOMETHIONINE
A
MSE
45
MET
A
MSE
68
SELENOMETHIONINE
A
MSE
68
MET
A
MSE
81
SELENOMETHIONINE
A
MSE
81
MET
B
MSE
45
SELENOMETHIONINE
B
MSE
45
MET
B
MSE
68
SELENOMETHIONINE
B
MSE
68
MET
B
MSE
81
SELENOMETHIONINE
B
MSE
81
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_445
x-y-1/3,-y-2/3,-z+1/3
crystal symmetry operation
0.0000000000
-65.1355026694
38.5093333333
A
N
ILE
29
A
N
ILE
29
A
O
VAL
38
A
O
VAL
38
A
N
TRP
37
A
N
TRP
37
A
O
VAL
44
A
O
VAL
44
A
N
MSE
45
A
N
MSE
45
A
O
TYR
80
A
O
TYR
80
B
N
ILE
29
B
N
ILE
29
B
O
VAL
38
B
O
VAL
38
B
N
TRP
37
B
N
TRP
37
B
O
VAL
44
B
O
VAL
44
B
N
MSE
45
B
N
MSE
45
B
O
TYR
80
B
O
TYR
80
1
A
HOH
136
G
HOH
1
A
MSE
1
A
MSE
1
1
Y
1
A
ILE
2
A
ILE
2
1
Y
1
A
GLU
3
A
GLU
3
1
Y
1
A
ASN
4
A
ASN
4
1
Y
1
A
SER
5
A
SER
5
1
Y
1
A
SER
6
A
SER
6
1
Y
1
A
PRO
7
A
PRO
7
1
Y
1
A
TYR
8
A
TYR
8
1
Y
1
A
THR
9
A
THR
9
1
Y
1
A
SER
10
A
SER
10
1
Y
1
A
GLU
11
A
GLU
11
1
Y
1
A
LEU
107
A
LEU
107
1
Y
1
A
GLU
108
A
GLU
108
1
Y
1
A
HIS
109
A
HIS
109
1
Y
1
A
HIS
110
A
HIS
110
1
Y
1
A
HIS
111
A
HIS
111
1
Y
1
A
HIS
112
A
HIS
112
1
Y
1
A
HIS
113
A
HIS
113
1
Y
1
A
HIS
114
A
HIS
114
1
Y
1
B
MSE
1
B
MSE
1
1
Y
1
B
ILE
2
B
ILE
2
1
Y
1
B
GLU
3
B
GLU
3
1
Y
1
B
ASN
4
B
ASN
4
1
Y
1
B
SER
5
B
SER
5
1
Y
1
B
SER
6
B
SER
6
1
Y
1
B
PRO
7
B
PRO
7
1
Y
1
B
TYR
8
B
TYR
8
1
Y
1
B
THR
9
B
THR
9
1
Y
1
B
SER
10
B
SER
10
1
Y
1
B
GLU
11
B
GLU
11
1
Y
1
B
LEU
107
B
LEU
107
1
Y
1
B
GLU
108
B
GLU
108
1
Y
1
B
HIS
109
B
HIS
109
1
Y
1
B
HIS
110
B
HIS
110
1
Y
1
B
HIS
111
B
HIS
111
1
Y
1
B
HIS
112
B
HIS
112
1
Y
1
B
HIS
113
B
HIS
113
1
Y
1
B
HIS
114
B
HIS
114
1
Y
1
A
LYS
35
81.86
-7.89
1
A
PRO
46
-48.26
166.09
1
B
LYS
35
82.07
-8.07
192.720
94.1634
15.220
-3.7665
0.0000
0.0000
-3.7665
0.0000
7.5329
0.2744
0.2292
0.2337
2.6930
49.7240
783
7989
7829
10.0000
97.7400
1.000
0.500
0.4200
10% data, random
1
0.000
MAD
0.0400
0.4000
Engh & Huber
FLAT BULK SOLVENT MODEL
88.8650
0.3840
2.6930
49.7240
36
1620
10
0
1574
0.004
1628
0.674
2194
0.048
240
0.002
268
13.741
598
1
A
1
772
X-RAY DIFFRACTION
POSITIONAL
0.015
2
B
1
772
X-RAY DIFFRACTION
POSITIONAL
0.015
0.3573
0.3091
2.8622
118
1067
1185
6
90.0000
0.3442
0.2872
3.0831
131
1172
1303
6
99.0000
0.3201
0.2740
3.3933
132
1187
1319
6
100.0000
0.2720
0.2213
3.8842
131
1183
1314
6
99.0000
0.2630
0.1916
4.8930
134
1201
1335
6
100.0000
0.2383
0.2178
49.7323
137
1236
1373
6
98.0000
74.8
2.693
50
3NNQ
7989
2.0
2
0.1
1
44.1
10.2
99.8
0.886
2.70
2.80
3.43
795
1
9.6
100
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
dev_403
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
ADSC
Quantum
data reduction
HKL-2000
data scaling
HKL-2000
N
Crystal Structure of the N-terminal domain of Moloney murine leukemia virus integrase, Northeast Structural Genomics Consortium Target OR3
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
Authors state that the biological unit is a dimer, not a tetramer. The dimer in the asymmetric unit may not be the real dimer in solution, however.
A
THR
16
A
THR
16
HELX_P
A
GLY
27
A
GLY
27
1
1
12
A
PRO
46
A
PRO
46
HELX_P
A
HIS
62
A
HIS
62
1
2
17
A
SER
64
A
SER
64
HELX_P
A
HIS
76
A
HIS
76
1
3
13
A
ASN
83
A
ASN
83
HELX_P
A
CYS
95
A
CYS
95
1
4
13
A
CYS
95
A
CYS
95
HELX_P
A
ALA
103
A
ALA
103
1
5
9
B
THR
16
B
THR
16
HELX_P
B
GLY
27
B
GLY
27
1
6
12
B
PRO
46
B
PRO
46
HELX_P
B
HIS
62
B
HIS
62
1
7
17
B
SER
64
B
SER
64
HELX_P
B
HIS
76
B
HIS
76
1
8
13
B
ASN
83
B
ASN
83
HELX_P
B
CYS
95
B
CYS
95
1
9
13
B
CYS
95
B
CYS
95
HELX_P
B
ALA
103
B
ALA
103
1
10
9
covale
1.327
both
A
VAL
44
A
C
VAL
44
1_555
A
MSE
45
A
N
MSE
45
1_555
covale
1.346
both
A
MSE
45
A
C
MSE
45
1_555
A
PRO
46
A
N
PRO
46
1_555
covale
1.329
both
A
LYS
67
A
C
LYS
67
1_555
A
MSE
68
A
N
MSE
68
1_555
covale
1.329
both
A
MSE
68
A
C
MSE
68
1_555
A
LYS
69
A
N
LYS
69
1_555
covale
1.329
both
A
TYR
80
A
C
TYR
80
1_555
A
MSE
81
A
N
MSE
81
1_555
covale
1.329
both
A
MSE
81
A
C
MSE
81
1_555
A
LEU
82
A
N
LEU
82
1_555
covale
1.327
both
B
VAL
44
B
C
VAL
44
1_555
B
MSE
45
B
N
MSE
45
1_555
covale
1.347
both
B
MSE
45
B
C
MSE
45
1_555
B
PRO
46
B
N
PRO
46
1_555
covale
1.330
both
B
LYS
67
B
C
LYS
67
1_555
B
MSE
68
B
N
MSE
68
1_555
covale
1.329
both
B
MSE
68
B
C
MSE
68
1_555
B
LYS
69
B
N
LYS
69
1_555
covale
1.330
both
B
TYR
80
B
C
TYR
80
1_555
B
MSE
81
B
N
MSE
81
1_555
covale
1.328
both
B
MSE
81
B
C
MSE
81
1_555
B
LEU
82
B
N
LEU
82
1_555
metalc
2.052
A
HIS
58
A
NE2
HIS
58
1_555
A
ZN
201
C
ZN
ZN
1_555
metalc
2.061
A
HIS
62
A
ND1
HIS
62
1_555
A
ZN
201
C
ZN
ZN
1_555
metalc
2.279
A
CYS
95
A
SG
CYS
95
1_555
A
ZN
201
C
ZN
ZN
1_555
metalc
2.332
A
CYS
98
A
SG
CYS
98
1_555
A
ZN
201
C
ZN
ZN
1_555
metalc
2.090
B
HIS
58
B
NE2
HIS
58
1_555
B
ZN
201
E
ZN
ZN
1_555
metalc
2.067
B
HIS
62
B
ND1
HIS
62
1_555
B
ZN
201
E
ZN
ZN
1_555
metalc
2.304
B
CYS
95
B
SG
CYS
95
1_555
B
ZN
201
E
ZN
ZN
1_555
metalc
2.281
B
CYS
98
B
SG
CYS
98
1_555
B
ZN
201
E
ZN
ZN
1_555
VIRAL PROTEIN
retroviral integrase, Zn finger, Moloney murine leukemia virus, structural genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, VIRAL PROTEIN
A
B
A
HIS
12
A
HIS
12
A
SER
104
A
SER
104
chain A and (resseq 12:104 )
B
HIS
12
B
HIS
12
B
SER
104
B
SER
104
chain B and (resseq 12:104 )
POL_MLVMO
UNP
1
1331
P03355
IENSSPYTSEHFHYTVTDIKDLTKLGAIYDKTKKYWVYQGKPVMPDQFTFELLDFLHQLTHLSFSKMKALLERSHSPYYM
LNRDRTLKNITETCKACAQVNASKS
1331
1435
3NNQ
2
106
P03355
A
1
2
106
1331
1435
3NNQ
2
106
P03355
B
1
2
106
1
expression tag
MSE
1
3NNQ
A
P03355
UNP
1
1
expression tag
LEU
107
3NNQ
A
P03355
UNP
107
1
expression tag
GLU
108
3NNQ
A
P03355
UNP
108
1
expression tag
HIS
109
3NNQ
A
P03355
UNP
109
1
expression tag
HIS
110
3NNQ
A
P03355
UNP
110
1
expression tag
HIS
111
3NNQ
A
P03355
UNP
111
1
expression tag
HIS
112
3NNQ
A
P03355
UNP
112
1
expression tag
HIS
113
3NNQ
A
P03355
UNP
113
1
expression tag
HIS
114
3NNQ
A
P03355
UNP
114
2
expression tag
MSE
1
3NNQ
B
P03355
UNP
1
2
expression tag
LEU
107
3NNQ
B
P03355
UNP
107
2
expression tag
GLU
108
3NNQ
B
P03355
UNP
108
2
expression tag
HIS
109
3NNQ
B
P03355
UNP
109
2
expression tag
HIS
110
3NNQ
B
P03355
UNP
110
2
expression tag
HIS
111
3NNQ
B
P03355
UNP
111
2
expression tag
HIS
112
3NNQ
B
P03355
UNP
112
2
expression tag
HIS
113
3NNQ
B
P03355
UNP
113
2
expression tag
HIS
114
3NNQ
B
P03355
UNP
114
4
4
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
A
ILE
29
A
ILE
29
A
ASP
31
A
ASP
31
A
TYR
36
A
TYR
36
A
TYR
39
A
TYR
39
A
LYS
42
A
LYS
42
A
MSE
45
A
MSE
45
A
TYR
80
A
TYR
80
A
MSE
81
A
MSE
81
B
ILE
29
B
ILE
29
B
ASP
31
B
ASP
31
B
TYR
36
B
TYR
36
B
TYR
39
B
TYR
39
B
LYS
42
B
LYS
42
B
MSE
45
B
MSE
45
B
TYR
80
B
TYR
80
B
MSE
81
B
MSE
81
BINDING SITE FOR RESIDUE ZN A 201
A
ZN
201
Software
4
BINDING SITE FOR RESIDUE ACT A 115
A
ACT
115
Software
3
BINDING SITE FOR RESIDUE ZN B 201
B
ZN
201
Software
4
BINDING SITE FOR RESIDUE ACT B 115
B
ACT
115
Software
3
A
HIS
58
A
HIS
58
4
1_555
A
HIS
62
A
HIS
62
4
1_555
A
CYS
95
A
CYS
95
4
1_555
A
CYS
98
A
CYS
98
4
1_555
A
LEU
71
A
LEU
71
3
1_555
A
ARG
74
A
ARG
74
3
1_555
A
HOH
124
G
HOH
3
1_555
B
HIS
58
B
HIS
58
4
1_555
B
HIS
62
B
HIS
62
4
1_555
B
CYS
95
B
CYS
95
4
1_555
B
CYS
98
B
CYS
98
4
1_555
B
LEU
71
B
LEU
71
3
1_555
B
HOH
116
H
HOH
3
1_555
B
HOH
124
H
HOH
3
1_555
155
H 3 2