0.021658 0.000000 0.000000 0.000000 0.015674 0.000000 0.000000 0.000000 0.009470 0.000000 0.000000 0.000000 Joint Center for Structural Genomics Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 46.173 63.798 105.600 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H8 O7 192.124 CITRIC ACID non-polymer Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C4 H10 O3 106.120 DI(HYDROXYETHYL)ETHER non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a protein of unknown function (BACCAC_01654) from Bacteroides caccae at 1.35 A resolution 10.2210/pdb3no2/pdb pdb_00003no2 100 1 Flat mirror (vertical focusing) CCD 2010-04-08 MARMOSAIC 325 mm CCD Single crystal Si(111) bent monochromator (horizontal focusing) MAD M x-ray 1 0.91837 1.0 0.97941 1.0 0.97894 1.0 BL11-1 SSRL 0.91837,0.97941,0.97894 SYNCHROTRON SSRL BEAMLINE BL11-1 30676.355 uncharacterized protein 1 man polymer 35.453 CHLORIDE ION 1 syn non-polymer 192.124 CITRIC ACID 1 syn non-polymer 106.120 DI(HYDROXYETHYL)ETHER 2 syn non-polymer 18.015 water 368 nat water no yes GSSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAK(MSE)ITRDGRELWNIAAPAG CE(MSE)QTARILPDGNALVAWCGHPSTILEVN(MSE)KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEV REIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFG(MSE)ISTICPIRE GSSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITRDGRELWNIAAPAGCEMQ TARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNS VKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGK GKHPQLVEIDSEGKVVWQLNDKVKFGMISTICPIRE A 416597 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n TBD ATCC 43185 sample BACCAC_01654, ZP_01960044.1 411901 Bacteroides caccae 562 Escherichia Coli HK100 Plasmid SpeedET 1 2.54 51.48 VAPOR DIFFUSION, SITTING DROP 5.5 40.000000000% PEG-600, 0.1M Citrate pH 5.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, VAPOR DIFFUSION, SITTING DROP 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Database references Derived calculations 1 0 2010-07-28 1 1 2011-07-13 1 2 2023-02-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2010-06-24 REL REL CL CHLORIDE ION CIT CITRIC ACID PEG DI(HYDROXYETHYL)ETHER HOH water THE CONSTRUCT (20-294) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. CL 1 2 CL CL 1 A CIT 2 3 CIT CIT 2 A PEG 3 4 PEG PEG 3 A PEG 4 4 PEG PEG 4 A HOH 5 5 HOH HOH 5 A HOH 6 5 HOH HOH 6 A HOH 7 5 HOH HOH 7 A HOH 8 5 HOH HOH 8 A HOH 9 5 HOH HOH 9 A HOH 10 5 HOH HOH 10 A HOH 11 5 HOH HOH 11 A HOH 12 5 HOH HOH 12 A HOH 13 5 HOH HOH 13 A HOH 14 5 HOH HOH 14 A HOH 15 5 HOH HOH 15 A HOH 16 5 HOH HOH 16 A HOH 17 5 HOH HOH 17 A HOH 18 5 HOH HOH 18 A HOH 295 5 HOH HOH 295 A HOH 296 5 HOH HOH 296 A HOH 297 5 HOH HOH 297 A HOH 298 5 HOH HOH 298 A HOH 299 5 HOH HOH 299 A HOH 300 5 HOH HOH 300 A HOH 301 5 HOH HOH 301 A HOH 302 5 HOH HOH 302 A HOH 303 5 HOH HOH 303 A HOH 304 5 HOH HOH 304 A HOH 305 5 HOH HOH 305 A HOH 306 5 HOH HOH 306 A HOH 307 5 HOH HOH 307 A HOH 308 5 HOH HOH 308 A HOH 309 5 HOH HOH 309 A HOH 310 5 HOH HOH 310 A HOH 311 5 HOH HOH 311 A HOH 312 5 HOH HOH 312 A HOH 313 5 HOH HOH 313 A HOH 314 5 HOH HOH 314 A HOH 315 5 HOH HOH 315 A HOH 316 5 HOH HOH 316 A HOH 317 5 HOH HOH 317 A HOH 318 5 HOH HOH 318 A HOH 319 5 HOH HOH 319 A HOH 320 5 HOH HOH 320 A HOH 321 5 HOH HOH 321 A HOH 322 5 HOH HOH 322 A HOH 323 5 HOH HOH 323 A HOH 324 5 HOH HOH 324 A HOH 325 5 HOH HOH 325 A HOH 326 5 HOH HOH 326 A HOH 327 5 HOH HOH 327 A HOH 328 5 HOH HOH 328 A HOH 329 5 HOH HOH 329 A HOH 330 5 HOH HOH 330 A HOH 331 5 HOH HOH 331 A HOH 332 5 HOH HOH 332 A HOH 333 5 HOH HOH 333 A HOH 334 5 HOH HOH 334 A HOH 335 5 HOH HOH 335 A HOH 336 5 HOH HOH 336 A HOH 337 5 HOH HOH 337 A HOH 338 5 HOH HOH 338 A HOH 339 5 HOH HOH 339 A HOH 340 5 HOH HOH 340 A HOH 341 5 HOH HOH 341 A HOH 342 5 HOH HOH 342 A HOH 343 5 HOH HOH 343 A HOH 344 5 HOH HOH 344 A HOH 345 5 HOH HOH 345 A HOH 346 5 HOH HOH 346 A HOH 347 5 HOH HOH 347 A HOH 348 5 HOH HOH 348 A HOH 349 5 HOH HOH 349 A HOH 350 5 HOH HOH 350 A HOH 351 5 HOH HOH 351 A HOH 352 5 HOH HOH 352 A HOH 353 5 HOH HOH 353 A HOH 354 5 HOH HOH 354 A HOH 355 5 HOH HOH 355 A HOH 356 5 HOH HOH 356 A HOH 357 5 HOH HOH 357 A HOH 358 5 HOH HOH 358 A HOH 359 5 HOH HOH 359 A HOH 360 5 HOH HOH 360 A HOH 361 5 HOH HOH 361 A HOH 362 5 HOH HOH 362 A HOH 363 5 HOH HOH 363 A HOH 364 5 HOH HOH 364 A HOH 365 5 HOH HOH 365 A HOH 366 5 HOH HOH 366 A HOH 367 5 HOH HOH 367 A HOH 368 5 HOH HOH 368 A HOH 369 5 HOH HOH 369 A HOH 370 5 HOH HOH 370 A HOH 371 5 HOH HOH 371 A HOH 372 5 HOH HOH 372 A HOH 19 5 HOH HOH 373 A HOH 20 5 HOH HOH 374 A HOH 21 5 HOH HOH 375 A HOH 22 5 HOH HOH 376 A HOH 23 5 HOH HOH 377 A HOH 24 5 HOH HOH 378 A HOH 25 5 HOH HOH 379 A HOH 26 5 HOH HOH 380 A HOH 27 5 HOH HOH 381 A HOH 28 5 HOH HOH 382 A HOH 29 5 HOH HOH 383 A HOH 30 5 HOH HOH 384 A HOH 31 5 HOH HOH 385 A HOH 32 5 HOH HOH 386 A HOH 33 5 HOH HOH 387 A HOH 34 5 HOH HOH 388 A HOH 35 5 HOH HOH 389 A HOH 36 5 HOH HOH 390 A HOH 37 5 HOH HOH 391 A HOH 38 5 HOH HOH 392 A HOH 39 5 HOH HOH 393 A HOH 40 5 HOH HOH 394 A HOH 41 5 HOH HOH 395 A HOH 42 5 HOH HOH 396 A HOH 43 5 HOH HOH 397 A HOH 44 5 HOH HOH 398 A HOH 45 5 HOH HOH 399 A HOH 46 5 HOH HOH 400 A HOH 47 5 HOH HOH 401 A HOH 48 5 HOH HOH 402 A HOH 49 5 HOH HOH 403 A HOH 50 5 HOH HOH 404 A HOH 51 5 HOH HOH 405 A HOH 52 5 HOH HOH 406 A HOH 53 5 HOH HOH 407 A HOH 54 5 HOH HOH 408 A HOH 55 5 HOH HOH 409 A HOH 56 5 HOH HOH 410 A HOH 57 5 HOH HOH 411 A HOH 58 5 HOH HOH 412 A HOH 59 5 HOH HOH 413 A HOH 60 5 HOH HOH 414 A HOH 61 5 HOH HOH 415 A HOH 62 5 HOH HOH 416 A HOH 63 5 HOH HOH 417 A HOH 64 5 HOH HOH 418 A HOH 65 5 HOH HOH 419 A HOH 66 5 HOH HOH 420 A HOH 67 5 HOH HOH 421 A HOH 68 5 HOH HOH 422 A HOH 69 5 HOH HOH 423 A HOH 70 5 HOH HOH 424 A HOH 71 5 HOH HOH 425 A HOH 72 5 HOH HOH 426 A HOH 73 5 HOH HOH 427 A HOH 74 5 HOH HOH 428 A HOH 75 5 HOH HOH 429 A HOH 76 5 HOH HOH 430 A HOH 77 5 HOH HOH 431 A HOH 78 5 HOH HOH 432 A HOH 79 5 HOH HOH 433 A HOH 80 5 HOH HOH 434 A HOH 81 5 HOH HOH 435 A HOH 82 5 HOH HOH 436 A HOH 83 5 HOH HOH 437 A HOH 84 5 HOH HOH 438 A HOH 85 5 HOH HOH 439 A HOH 86 5 HOH HOH 440 A HOH 87 5 HOH HOH 441 A HOH 88 5 HOH HOH 442 A HOH 89 5 HOH HOH 443 A HOH 90 5 HOH HOH 444 A HOH 91 5 HOH HOH 445 A HOH 92 5 HOH HOH 446 A HOH 93 5 HOH HOH 447 A HOH 94 5 HOH HOH 448 A HOH 95 5 HOH HOH 449 A HOH 96 5 HOH HOH 450 A HOH 97 5 HOH HOH 451 A HOH 98 5 HOH HOH 452 A HOH 99 5 HOH HOH 453 A HOH 100 5 HOH HOH 454 A HOH 101 5 HOH HOH 455 A HOH 102 5 HOH HOH 456 A HOH 103 5 HOH HOH 457 A HOH 104 5 HOH HOH 458 A HOH 105 5 HOH HOH 459 A HOH 106 5 HOH HOH 460 A HOH 107 5 HOH HOH 461 A HOH 108 5 HOH HOH 462 A HOH 109 5 HOH HOH 463 A HOH 110 5 HOH HOH 464 A HOH 111 5 HOH HOH 465 A HOH 112 5 HOH HOH 466 A HOH 113 5 HOH HOH 467 A HOH 114 5 HOH HOH 468 A HOH 115 5 HOH HOH 469 A HOH 116 5 HOH HOH 470 A HOH 117 5 HOH HOH 471 A HOH 118 5 HOH HOH 472 A HOH 119 5 HOH HOH 473 A HOH 120 5 HOH HOH 474 A HOH 121 5 HOH HOH 475 A HOH 122 5 HOH HOH 476 A HOH 123 5 HOH HOH 477 A HOH 124 5 HOH HOH 478 A HOH 125 5 HOH HOH 479 A HOH 126 5 HOH HOH 480 A HOH 127 5 HOH HOH 481 A HOH 128 5 HOH HOH 482 A HOH 129 5 HOH HOH 483 A HOH 130 5 HOH HOH 484 A HOH 131 5 HOH HOH 485 A HOH 132 5 HOH HOH 486 A HOH 133 5 HOH HOH 487 A HOH 134 5 HOH HOH 488 A HOH 135 5 HOH HOH 489 A HOH 136 5 HOH HOH 490 A HOH 137 5 HOH HOH 491 A HOH 138 5 HOH HOH 492 A HOH 139 5 HOH HOH 493 A HOH 140 5 HOH HOH 494 A HOH 141 5 HOH HOH 495 A HOH 142 5 HOH HOH 496 A HOH 143 5 HOH HOH 497 A HOH 144 5 HOH HOH 498 A HOH 145 5 HOH HOH 499 A HOH 146 5 HOH HOH 500 A HOH 147 5 HOH HOH 501 A HOH 148 5 HOH HOH 502 A HOH 149 5 HOH HOH 503 A HOH 150 5 HOH HOH 504 A HOH 151 5 HOH HOH 505 A HOH 152 5 HOH HOH 506 A HOH 153 5 HOH HOH 507 A HOH 154 5 HOH HOH 508 A HOH 155 5 HOH HOH 509 A HOH 156 5 HOH HOH 510 A HOH 157 5 HOH HOH 511 A HOH 158 5 HOH HOH 512 A HOH 159 5 HOH HOH 513 A HOH 160 5 HOH HOH 514 A HOH 161 5 HOH HOH 515 A HOH 162 5 HOH HOH 516 A HOH 163 5 HOH HOH 517 A HOH 164 5 HOH HOH 518 A HOH 165 5 HOH HOH 519 A HOH 166 5 HOH HOH 520 A HOH 167 5 HOH HOH 521 A HOH 168 5 HOH HOH 522 A HOH 169 5 HOH HOH 523 A HOH 170 5 HOH HOH 524 A HOH 171 5 HOH HOH 525 A HOH 172 5 HOH HOH 526 A HOH 173 5 HOH HOH 527 A HOH 174 5 HOH HOH 528 A HOH 175 5 HOH HOH 529 A HOH 176 5 HOH HOH 530 A HOH 177 5 HOH HOH 531 A HOH 178 5 HOH HOH 532 A HOH 179 5 HOH HOH 533 A HOH 180 5 HOH HOH 534 A HOH 181 5 HOH HOH 535 A HOH 182 5 HOH HOH 536 A HOH 183 5 HOH HOH 537 A HOH 184 5 HOH HOH 538 A HOH 185 5 HOH HOH 539 A HOH 186 5 HOH HOH 540 A HOH 187 5 HOH HOH 541 A HOH 188 5 HOH HOH 542 A HOH 189 5 HOH HOH 543 A HOH 190 5 HOH HOH 544 A HOH 191 5 HOH HOH 545 A HOH 192 5 HOH HOH 546 A HOH 193 5 HOH HOH 547 A HOH 194 5 HOH HOH 548 A HOH 195 5 HOH HOH 549 A HOH 196 5 HOH HOH 550 A HOH 197 5 HOH HOH 551 A HOH 198 5 HOH HOH 552 A HOH 199 5 HOH HOH 553 A HOH 200 5 HOH HOH 554 A HOH 201 5 HOH HOH 555 A HOH 202 5 HOH HOH 556 A HOH 203 5 HOH HOH 557 A HOH 204 5 HOH HOH 558 A HOH 205 5 HOH HOH 559 A HOH 206 5 HOH HOH 560 A HOH 207 5 HOH HOH 561 A HOH 208 5 HOH HOH 562 A HOH 209 5 HOH HOH 563 A HOH 210 5 HOH HOH 564 A HOH 211 5 HOH HOH 565 A HOH 212 5 HOH HOH 566 A HOH 213 5 HOH HOH 567 A HOH 214 5 HOH HOH 568 A HOH 215 5 HOH HOH 569 A HOH 216 5 HOH HOH 570 A HOH 217 5 HOH HOH 571 A HOH 218 5 HOH HOH 572 A HOH 219 5 HOH HOH 573 A HOH 220 5 HOH HOH 574 A HOH 221 5 HOH HOH 575 A HOH 222 5 HOH HOH 576 A HOH 223 5 HOH HOH 577 A HOH 224 5 HOH HOH 578 A HOH 225 5 HOH HOH 579 A HOH 226 5 HOH HOH 580 A HOH 227 5 HOH HOH 581 A HOH 228 5 HOH HOH 582 A HOH 229 5 HOH HOH 583 A HOH 230 5 HOH HOH 584 A HOH 231 5 HOH HOH 585 A HOH 232 5 HOH HOH 586 A HOH 233 5 HOH HOH 587 A HOH 234 5 HOH HOH 588 A HOH 235 5 HOH HOH 589 A HOH 236 5 HOH HOH 590 A HOH 237 5 HOH HOH 591 A HOH 238 5 HOH HOH 592 A HOH 239 5 HOH HOH 593 A HOH 240 5 HOH HOH 594 A HOH 241 5 HOH HOH 595 A HOH 242 5 HOH HOH 596 A HOH 243 5 HOH HOH 597 A HOH 244 5 HOH HOH 598 A HOH 245 5 HOH HOH 599 A HOH 246 5 HOH HOH 600 A HOH 247 5 HOH HOH 601 A HOH 248 5 HOH HOH 602 A HOH 249 5 HOH HOH 603 A HOH 250 5 HOH HOH 604 A HOH 251 5 HOH HOH 605 A HOH 252 5 HOH HOH 606 A HOH 253 5 HOH HOH 607 A HOH 254 5 HOH HOH 608 A HOH 255 5 HOH HOH 609 A HOH 256 5 HOH HOH 610 A HOH 257 5 HOH HOH 611 A HOH 258 5 HOH HOH 612 A HOH 259 5 HOH HOH 613 A HOH 260 5 HOH HOH 614 A HOH 261 5 HOH HOH 615 A HOH 262 5 HOH HOH 616 A HOH 263 5 HOH HOH 617 A HOH 264 5 HOH HOH 618 A HOH 265 5 HOH HOH 619 A HOH 266 5 HOH HOH 620 A HOH 267 5 HOH HOH 621 A HOH 268 5 HOH HOH 622 A HOH 269 5 HOH HOH 623 A HOH 270 5 HOH HOH 624 A HOH 271 5 HOH HOH 625 A HOH 272 5 HOH HOH 626 A HOH 273 5 HOH HOH 627 A HOH 274 5 HOH HOH 628 A HOH 275 5 HOH HOH 629 A HOH 276 5 HOH HOH 630 A HOH 277 5 HOH HOH 631 A HOH 278 5 HOH HOH 632 A HOH 279 5 HOH HOH 633 A HOH 280 5 HOH HOH 634 A HOH 281 5 HOH HOH 635 A HOH 282 5 HOH HOH 636 A HOH 283 5 HOH HOH 637 A HOH 284 5 HOH HOH 638 A HOH 285 5 HOH HOH 639 A HOH 286 5 HOH HOH 640 A HOH 287 5 HOH HOH 641 A HOH 288 5 HOH HOH 642 A HOH 289 5 HOH HOH 643 A HOH 290 5 HOH HOH 644 A HOH 291 5 HOH HOH 645 A HOH 292 5 HOH HOH 646 A HOH 293 5 HOH HOH 647 A HOH 294 5 HOH HOH 648 A n 1 0 A n 2 20 A SER 21 n 3 SER 21 A PRO 22 n 4 PRO 22 A GLN 23 n 5 GLN 23 A HIS 24 n 6 HIS 24 A LEU 25 n 7 LEU 25 A LEU 26 n 8 LEU 26 A VAL 27 n 9 VAL 27 A GLY 28 n 10 GLY 28 A GLY 29 n 11 GLY 29 A SER 30 n 12 SER 30 A GLY 31 n 13 GLY 31 A TRP 32 n 14 TRP 32 A ASN 33 n 15 ASN 33 A LYS 34 n 16 LYS 34 A ILE 35 n 17 ILE 35 A ALA 36 n 18 ALA 36 A ILE 37 n 19 ILE 37 A ILE 38 n 20 ILE 38 A ASN 39 n 21 ASN 39 A LYS 40 n 22 LYS 40 A ASP 41 n 23 ASP 41 A THR 42 n 24 THR 42 A LYS 43 n 25 LYS 43 A GLU 44 n 26 GLU 44 A ILE 45 n 27 ILE 45 A VAL 46 n 28 VAL 46 A TRP 47 n 29 TRP 47 A GLU 48 n 30 GLU 48 A TYR 49 n 31 TYR 49 A PRO 50 n 32 PRO 50 A LEU 51 n 33 LEU 51 A GLU 52 n 34 GLU 52 A LYS 53 n 35 LYS 53 A GLY 54 n 36 GLY 54 A TRP 55 n 37 TRP 55 A GLU 56 n 38 GLU 56 A CYS 57 n 39 CYS 57 A ASN 58 n 40 ASN 58 A SER 59 n 41 SER 59 A VAL 60 n 42 VAL 60 A ALA 61 n 43 ALA 61 A ALA 62 n 44 ALA 62 A THR 63 n 45 THR 63 A LYS 64 n 46 LYS 64 A ALA 65 n 47 ALA 65 A GLY 66 n 48 GLY 66 A GLU 67 n 49 GLU 67 A ILE 68 n 50 ILE 68 A LEU 69 n 51 LEU 69 A PHE 70 n 52 PHE 70 A SER 71 n 53 SER 71 A TYR 72 n 54 TYR 72 A SER 73 n 55 SER 73 A LYS 74 n 56 LYS 74 A GLY 75 n 57 GLY 75 A ALA 76 n 58 ALA 76 A LYS 77 n 59 LYS 77 A MSE 78 n 60 MSE 78 A ILE 79 n 61 ILE 79 A THR 80 n 62 THR 80 A ARG 81 n 63 ARG 81 A ASP 82 n 64 ASP 82 A GLY 83 n 65 GLY 83 A ARG 84 n 66 ARG 84 A GLU 85 n 67 GLU 85 A LEU 86 n 68 LEU 86 A TRP 87 n 69 TRP 87 A ASN 88 n 70 ASN 88 A ILE 89 n 71 ILE 89 A ALA 90 n 72 ALA 90 A ALA 91 n 73 ALA 91 A PRO 92 n 74 PRO 92 A ALA 93 n 75 ALA 93 A GLY 94 n 76 GLY 94 A CYS 95 n 77 CYS 95 A GLU 96 n 78 GLU 96 A MSE 97 n 79 MSE 97 A GLN 98 n 80 GLN 98 A THR 99 n 81 THR 99 A ALA 100 n 82 ALA 100 A ARG 101 n 83 ARG 101 A ILE 102 n 84 ILE 102 A LEU 103 n 85 LEU 103 A PRO 104 n 86 PRO 104 A ASP 105 n 87 ASP 105 A GLY 106 n 88 GLY 106 A ASN 107 n 89 ASN 107 A ALA 108 n 90 ALA 108 A LEU 109 n 91 LEU 109 A VAL 110 n 92 VAL 110 A ALA 111 n 93 ALA 111 A TRP 112 n 94 TRP 112 A CYS 113 n 95 CYS 113 A GLY 114 n 96 GLY 114 A HIS 115 n 97 HIS 115 A PRO 116 n 98 PRO 116 A SER 117 n 99 SER 117 A THR 118 n 100 THR 118 A ILE 119 n 101 ILE 119 A LEU 120 n 102 LEU 120 A GLU 121 n 103 GLU 121 A VAL 122 n 104 VAL 122 A ASN 123 n 105 ASN 123 A MSE 124 n 106 MSE 124 A LYS 125 n 107 LYS 125 A GLY 126 n 108 GLY 126 A GLU 127 n 109 GLU 127 A VAL 128 n 110 VAL 128 A LEU 129 n 111 LEU 129 A SER 130 n 112 SER 130 A LYS 131 n 113 LYS 131 A THR 132 n 114 THR 132 A GLU 133 n 115 GLU 133 A PHE 134 n 116 PHE 134 A GLU 135 n 117 GLU 135 A THR 136 n 118 THR 136 A GLY 137 n 119 GLY 137 A ILE 138 n 120 ILE 138 A GLU 139 n 121 GLU 139 A ARG 140 n 122 ARG 140 A PRO 141 n 123 PRO 141 A HIS 142 n 124 HIS 142 A ALA 143 n 125 ALA 143 A GLN 144 n 126 GLN 144 A PHE 145 n 127 PHE 145 A ARG 146 n 128 ARG 146 A GLN 147 n 129 GLN 147 A ILE 148 n 130 ILE 148 A ASN 149 n 131 ASN 149 A LYS 150 n 132 LYS 150 A ASN 151 n 133 ASN 151 A LYS 152 n 134 LYS 152 A LYS 153 n 135 LYS 153 A GLY 154 n 136 GLY 154 A ASN 155 n 137 ASN 155 A TYR 156 n 138 TYR 156 A LEU 157 n 139 LEU 157 A VAL 158 n 140 VAL 158 A PRO 159 n 141 PRO 159 A LEU 160 n 142 LEU 160 A PHE 161 n 143 PHE 161 A ALA 162 n 144 ALA 162 A THR 163 n 145 THR 163 A SER 164 n 146 SER 164 A GLU 165 n 147 GLU 165 A VAL 166 n 148 VAL 166 A ARG 167 n 149 ARG 167 A GLU 168 n 150 GLU 168 A ILE 169 n 151 ILE 169 A ALA 170 n 152 ALA 170 A PRO 171 n 153 PRO 171 A ASN 172 n 154 ASN 172 A GLY 173 n 155 GLY 173 A GLN 174 n 156 GLN 174 A LEU 175 n 157 LEU 175 A LEU 176 n 158 LEU 176 A ASN 177 n 159 ASN 177 A SER 178 n 160 SER 178 A VAL 179 n 161 VAL 179 A LYS 180 n 162 LYS 180 A LEU 181 n 163 LEU 181 A SER 182 n 164 SER 182 A GLY 183 n 165 GLY 183 A THR 184 n 166 THR 184 A PRO 185 n 167 PRO 185 A PHE 186 n 168 PHE 186 A SER 187 n 169 SER 187 A SER 188 n 170 SER 188 A ALA 189 n 171 ALA 189 A PHE 190 n 172 PHE 190 A LEU 191 n 173 LEU 191 A ASP 192 n 174 ASP 192 A ASN 193 n 175 ASN 193 A GLY 194 n 176 GLY 194 A ASP 195 n 177 ASP 195 A CYS 196 n 178 CYS 196 A LEU 197 n 179 LEU 197 A VAL 198 n 180 VAL 198 A ALA 199 n 181 ALA 199 A CYS 200 n 182 CYS 200 A GLY 201 n 183 GLY 201 A ASP 202 n 184 ASP 202 A ALA 203 n 185 ALA 203 A HIS 204 n 186 HIS 204 A CYS 205 n 187 CYS 205 A PHE 206 n 188 PHE 206 A VAL 207 n 189 VAL 207 A GLN 208 n 190 GLN 208 A LEU 209 n 191 LEU 209 A ASN 210 n 192 ASN 210 A LEU 211 n 193 LEU 211 A GLU 212 n 194 GLU 212 A SER 213 n 195 SER 213 A ASN 214 n 196 ASN 214 A ARG 215 n 197 ARG 215 A ILE 216 n 198 ILE 216 A VAL 217 n 199 VAL 217 A ARG 218 n 200 ARG 218 A ARG 219 n 201 ARG 219 A VAL 220 n 202 VAL 220 A ASN 221 n 203 ASN 221 A ALA 222 n 204 ALA 222 A ASN 223 n 205 ASN 223 A ASP 224 n 206 ASP 224 A ILE 225 n 207 ILE 225 A GLU 226 n 208 GLU 226 A GLY 227 n 209 GLY 227 A VAL 228 n 210 VAL 228 A GLN 229 n 211 GLN 229 A LEU 230 n 212 LEU 230 A PHE 231 n 213 PHE 231 A PHE 232 n 214 PHE 232 A VAL 233 n 215 VAL 233 A ALA 234 n 216 ALA 234 A GLN 235 n 217 GLN 235 A LEU 236 n 218 LEU 236 A PHE 237 n 219 PHE 237 A PRO 238 n 220 PRO 238 A LEU 239 n 221 LEU 239 A GLN 240 n 222 GLN 240 A ASN 241 n 223 ASN 241 A GLY 242 n 224 GLY 242 A GLY 243 n 225 GLY 243 A LEU 244 n 226 LEU 244 A TYR 245 n 227 TYR 245 A ILE 246 n 228 ILE 246 A CYS 247 n 229 CYS 247 A ASN 248 n 230 ASN 248 A TRP 249 n 231 TRP 249 A GLN 250 n 232 GLN 250 A GLY 251 n 233 GLY 251 A HIS 252 n 234 HIS 252 A ASP 253 n 235 ASP 253 A ARG 254 n 236 ARG 254 A GLU 255 n 237 GLU 255 A ALA 256 n 238 ALA 256 A GLY 257 n 239 GLY 257 A LYS 258 n 240 LYS 258 A GLY 259 n 241 GLY 259 A LYS 260 n 242 LYS 260 A HIS 261 n 243 HIS 261 A PRO 262 n 244 PRO 262 A GLN 263 n 245 GLN 263 A LEU 264 n 246 LEU 264 A VAL 265 n 247 VAL 265 A GLU 266 n 248 GLU 266 A ILE 267 n 249 ILE 267 A ASP 268 n 250 ASP 268 A SER 269 n 251 SER 269 A GLU 270 n 252 GLU 270 A GLY 271 n 253 GLY 271 A LYS 272 n 254 LYS 272 A VAL 273 n 255 VAL 273 A VAL 274 n 256 VAL 274 A TRP 275 n 257 TRP 275 A GLN 276 n 258 GLN 276 A LEU 277 n 259 LEU 277 A ASN 278 n 260 ASN 278 A ASP 279 n 261 ASP 279 A LYS 280 n 262 LYS 280 A VAL 281 n 263 VAL 281 A LYS 282 n 264 LYS 282 A PHE 283 n 265 PHE 283 A GLY 284 n 266 GLY 284 A MSE 285 n 267 MSE 285 A ILE 286 n 268 ILE 286 A SER 287 n 269 SER 287 A THR 288 n 270 THR 288 A ILE 289 n 271 ILE 289 A CYS 290 n 272 CYS 290 A PRO 291 n 273 PRO 291 A ILE 292 n 274 ILE 292 A ARG 293 n 275 ARG 293 A GLU 294 n 276 GLU 294 A 0.0357 -0.1300 0.0578 0.3007 -0.0513 0.2346 0.0037 -0.0088 -0.0065 -0.0125 0.0020 0.0102 0.0045 -0.0193 -0.0057 0.0014 -0.0042 -0.0023 0.0086 0.0027 0.0051 refined 40.1053 9.5309 16.8778 X-RAY DIFFRACTION A 21 A 294 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 1 monomeric A MSE 78 SELENOMETHIONINE A MSE 60 MET A MSE 97 SELENOMETHIONINE A MSE 79 MET A MSE 124 SELENOMETHIONINE A MSE 106 MET A MSE 285 SELENOMETHIONINE A MSE 267 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 46 A O VAL 28 A N ILE 37 A N ILE 19 A O ALA 36 A O ALA 18 A N VAL 27 A N VAL 9 A N LEU 26 A N LEU 8 A O CYS 290 A O CYS 272 A N ALA 61 A N ALA 43 A O LEU 69 A O LEU 51 A N ILE 68 A N ILE 50 A O ILE 79 A O ILE 61 A N ALA 76 A N ALA 58 A O ILE 89 A O ILE 71 A N GLU 96 A N GLU 78 A O CYS 113 A O CYS 95 A N ALA 108 A N ALA 90 A O VAL 122 A O VAL 104 A N GLU 121 A N GLU 103 A O LEU 129 A O LEU 111 A N ASN 149 A N ASN 131 A O LEU 157 A O LEU 139 A N VAL 158 A N VAL 140 A O ARG 167 A O ARG 149 A N GLU 168 A N GLU 150 A O LEU 176 A O LEU 158 A N ALA 189 A N ALA 171 A O LEU 197 A O LEU 179 A N CYS 196 A N CYS 178 A O LEU 209 A O LEU 191 A N GLN 208 A N GLN 190 A O VAL 217 A O VAL 199 A N PHE 232 A N PHE 214 A O TRP 249 A O TRP 231 A N LEU 244 A N LEU 226 A O ILE 267 A O ILE 249 A N GLU 266 A N GLU 248 A O TRP 275 A O TRP 257 1 A OG SER 21 A OG SER 3 1 Y 1 A CD LYS 64 A CD LYS 46 1 Y 1 A CE LYS 64 A CE LYS 46 1 Y 1 A NZ LYS 64 A NZ LYS 46 1 Y 1 A CG GLU 212 A CG GLU 194 1 Y 1 A CD GLU 212 A CD GLU 194 1 Y 1 A OE1 GLU 212 A OE1 GLU 194 1 Y 1 A OE2 GLU 212 A OE2 GLU 194 1 Y 1 A CD ARG 215 A CD ARG 197 1 Y 1 A NE ARG 215 A NE ARG 197 1 Y 1 A CZ ARG 215 A CZ ARG 197 1 Y 1 A NH1 ARG 215 A NH1 ARG 197 1 Y 1 A NH2 ARG 215 A NH2 ARG 197 1 Y 1 A CD GLN 240 A CD GLN 222 1 Y 1 A OE1 GLN 240 A OE1 GLN 222 1 Y 1 A NE2 GLN 240 A NE2 GLN 222 1 Y 1 A CG ARG 254 A CG ARG 236 1 Y 1 A CD ARG 254 A CD ARG 236 1 Y 1 A NE ARG 254 A NE ARG 236 1 Y 1 A CZ ARG 254 A CZ ARG 236 1 Y 1 A NH1 ARG 254 A NH1 ARG 236 1 Y 1 A NH2 ARG 254 A NH2 ARG 236 1 Y 1 A CE LYS 272 A CE LYS 254 1 Y 1 A NZ LYS 272 A NZ LYS 254 1 Y 1 A CD GLU 294 A CD GLU 276 1 Y 1 A OE1 GLU 294 A OE1 GLU 276 1 Y 1 A OE2 GLU 294 A OE2 GLU 276 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A SER 20 A SER 2 1 Y 1 A A NH2 O ARG HOH 167 637 2.19 B 1 -14.35 2.20 98.90 84.55 A A A CG SE CE MSE MSE MSE 124 124 124 B B B N 1 A TYR 72 A -143.37 21.62 1 A TYR 72 B -140.96 17.73 1 A SER 73 78.80 -53.90 1 A SER 73 80.45 -53.90 1 A ALA 100 -161.24 106.40 1 A GLN 144 -86.79 -105.68 1 A ARG 146 -114.77 -80.04 1 A LEU 181 -118.08 -140.32 1 A LEU 181 -118.08 -154.48 1 A PHE 231 -95.93 -109.87 1 A ALA 234 -96.32 -139.65 1 A ASN 248 -104.64 77.78 1 A LYS 260 -115.26 77.48 1 A ASP 279 -166.97 99.33 64.220 14.9537 2.860 0.4900 0.0000 0.0000 -0.2800 0.0000 -0.2100 0.9720 0.9670 (1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. (2). ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. (3). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. (4). CL AND CITRATE (CIT) IONS, AND PEG-600 FRAGMENTS (PEG) FROM CRYSTALLIZATION CONDITION WERE MODELED INTO THE STRUCTURE. (5). RAMACHANDRAN OUTLIER OF RESIDUE GLN144 IS SUPPORTED BY ELECTRON DENSITY. 0.1595 0.1468 0.1475 1.3500 27.993 3466 65006 68472 5.1000 98.8000 1.000 0.110 1.2920 0.0270 RANDOM 1 THROUGHOUT 0.000 MAD 0.0460 0.0450 0.8000 0.8000 1.4000 MAXIMUM LIKELIHOOD WITH PHASES MASK 1.3500 27.993 368 2501 28 0 2105 0.016 0.022 2460 0.001 0.020 1667 1.617 1.957 3355 0.912 3.000 4096 7.036 5.000 328 33.602 25.234 107 11.365 15.000 419 21.710 15.000 11 0.103 0.200 356 0.008 0.021 2874 0.002 0.020 482 1.544 3.000 1543 0.388 3.000 628 2.631 5.000 2504 3.874 8.000 917 6.154 11.000 851 0.2530 0.2540 1.3850 241 4702 4943 20 97.0200 10.556 0.164 1.35 27.993 3NO2 68533 -3.000 0.058 0.075 1 10.610 297194 97.700 0.861 0.505 1.350 1.400 1.9 28471 13740 13087 0.657 95.200 0.684 0.396 1.400 1.450 2.4 25252 11841 11410 0.516 96.400 0.531 0.308 1.450 1.520 3.1 30507 14080 13642 0.401 96.900 0.373 0.222 1.520 1.600 4.2 29318 13271 12963 0.288 97.700 0.292 0.168 1.600 1.700 5.5 29515 13174 12921 0.219 98.100 0.197 0.118 1.700 1.830 7.6 30053 13197 12944 0.153 98.100 0.124 0.075 1.830 2.020 11.5 31493 13629 13432 0.098 98.600 0.075 0.050 2.020 2.310 16.5 30508 13094 12930 0.065 98.700 0.052 0.038 2.310 2.910 21.0 30934 13209 13082 0.049 99.000 0.027 0.025 2.910 31.6 31143 13253 13079 0.032 98.700 phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.5.0110 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data reduction XDS phasing SHELXD phasing autoSHARP Y Crystal structure of a protein of unknown function (BACCAC_01654) from Bacteroides caccae at 1.35 A resolution 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N A ARG 140 A ARG 122 HELX_P A GLN 144 A GLN 126 5 1 5 A GLY 201 A GLY 183 HELX_P A ALA 203 A ALA 185 5 2 3 A ASN 223 A ASN 205 HELX_P A ILE 225 A ILE 207 5 3 3 A GLU 255 A GLU 237 HELX_P A GLY 259 A GLY 241 5 4 5 covale 1.326 both A A LYS 77 A C LYS 59 1_555 A MSE 78 A N MSE 60 1_555 covale 1.332 both B A LYS 77 A C LYS 59 1_555 A MSE 78 A N MSE 60 1_555 covale 1.324 both C A LYS 77 A C LYS 59 1_555 A MSE 78 A N MSE 60 1_555 covale 1.330 both A A MSE 78 A C MSE 60 1_555 A ILE 79 A N ILE 61 1_555 covale 1.327 both B A MSE 78 A C MSE 60 1_555 A ILE 79 A N ILE 61 1_555 covale 1.324 both C A MSE 78 A C MSE 60 1_555 A ILE 79 A N ILE 61 1_555 covale 1.332 both A GLU 96 A C GLU 78 1_555 A MSE 97 A N MSE 79 1_555 covale 1.329 both A MSE 97 A C MSE 79 1_555 A GLN 98 A N GLN 80 1_555 covale 1.336 both A A ASN 123 A C ASN 105 1_555 A MSE 124 A N MSE 106 1_555 covale 1.327 both B A ASN 123 A C ASN 105 1_555 A MSE 124 A N MSE 106 1_555 covale 1.320 both A A MSE 124 A C MSE 106 1_555 A LYS 125 A N LYS 107 1_555 covale 1.348 both B A MSE 124 A C MSE 106 1_555 A LYS 125 A N LYS 107 1_555 covale 1.310 both A GLY 284 A C GLY 266 1_555 A MSE 285 A N MSE 267 1_555 covale 1.320 both A MSE 285 A C MSE 267 1_555 A ILE 286 A N ILE 268 1_555 UNKNOWN FUNCTION six-bladed beta-propeller, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, UNKNOWN FUNCTION A HIS 115 A HIS 97 1 A PRO 116 A PRO 98 9.16 A5ZFJ0_9BACE UNP 1 20 A5ZFJ0 SSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITRDGRELWNIAAPAGCEMQT ARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSV KLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKG KHPQLVEIDSEGKVVWQLNDKVKFGMISTICPIRE 20 294 3NO2 20 294 A5ZFJ0 A 1 2 276 1 expression tag GLY 0 3NO2 A A5ZFJ0 UNP 1 4 4 4 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLU 44 A GLU 26 A PRO 50 A PRO 32 A LYS 34 A LYS 16 A ASN 39 A ASN 21 A HIS 24 A HIS 6 A GLY 28 A GLY 10 A THR 288 A THR 270 A ILE 292 A ILE 274 A SER 59 A SER 41 A ALA 62 A ALA 44 A ILE 68 A ILE 50 A SER 71 A SER 53 A GLY 75 A GLY 57 A ILE 79 A ILE 61 A GLU 85 A GLU 67 A ALA 90 A ALA 72 A GLU 96 A GLU 78 A ILE 102 A ILE 84 A ALA 108 A ALA 90 A CYS 113 A CYS 95 A SER 117 A SER 99 A VAL 122 A VAL 104 A VAL 128 A VAL 110 A PHE 134 A PHE 116 A ASN 149 A ASN 131 A LYS 150 A LYS 132 A TYR 156 A TYR 138 A LEU 160 A LEU 142 A GLU 165 A GLU 147 A ILE 169 A ILE 151 A LEU 175 A LEU 157 A LYS 180 A LYS 162 A SER 187 A SER 169 A PHE 190 A PHE 172 A CYS 196 A CYS 178 A ALA 199 A ALA 181 A CYS 205 A CYS 187 A LEU 209 A LEU 191 A ILE 216 A ILE 198 A ASN 221 A ASN 203 A PHE 232 A PHE 214 A PRO 238 A PRO 220 A LEU 244 A LEU 226 A TRP 249 A TRP 231 A LEU 264 A LEU 246 A ILE 267 A ILE 249 A VAL 273 A VAL 255 A LEU 277 A LEU 259 BINDING SITE FOR RESIDUE CL A 1 A CL 1 Software 3 BINDING SITE FOR RESIDUE CIT A 2 A CIT 2 Software 16 BINDING SITE FOR RESIDUE PEG A 3 A PEG 3 Software 3 BINDING SITE FOR RESIDUE PEG A 4 A PEG 4 Software 8 A LYS 43 A LYS 25 3 1_555 A GLN 276 A GLN 258 3 1_555 A HOH 384 F HOH 3 1_555 A SER 30 A SER 12 16 1_555 A GLU 56 A GLU 38 16 1_555 A ASN 58 A ASN 40 16 1_555 A HIS 142 A HIS 124 16 1_555 A ARG 146 A ARG 128 16 1_555 A PHE 161 A PHE 143 16 1_555 A PHE 186 A PHE 168 16 1_555 A TRP 249 A TRP 231 16 1_555 A HIS 252 A HIS 234 16 1_555 A HOH 298 F HOH 16 1_555 A HOH 334 F HOH 16 1_555 A HOH 401 F HOH 16 1_555 A HOH 445 F HOH 16 1_555 A HOH 480 F HOH 16 3_755 A HOH 516 F HOH 16 1_555 A HOH 548 F HOH 16 1_555 A PHE 190 A PHE 172 3 1_555 A LEU 191 A LEU 173 3 1_555 A HOH 627 F HOH 3 1_555 A ARG 218 A ARG 200 8 1_555 A ASP 224 A ASP 206 8 1_555 A GLY 242 A GLY 224 8 1_555 A ILE 267 A ILE 249 8 1_555 A ASP 268 A ASP 250 8 1_555 A SER 269 A SER 251 8 1_555 A GLY 271 A GLY 253 8 1_555 A HOH 372 F HOH 8 1_555 19 P 21 21 21