data_3NP6 # _entry.id 3NP6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NP6 pdb_00003np6 10.2210/pdb3np6/pdb NDB NA0614 ? ? RCSB RCSB060105 ? ? WWPDB D_1000060105 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3NX5 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3NP6 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2010-06-28 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ferraroni, M.' 1 'Bazzicalupi, C.' 2 'Gratteri, P.' 3 'Bilia, A.R.' 4 # _citation.id primary _citation.title ;X-Ray diffraction analyses of the natural isoquinoline alkaloids Berberine and Sanguinarine complexed with double helix DNA d(CGTACG) ; _citation.journal_abbrev 'Chem.Commun.(Camb.)' _citation.journal_volume 47 _citation.page_first 4917 _citation.page_last 4919 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1359-7345 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21431128 _citation.pdbx_database_id_DOI 10.1039/c1cc10971e # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ferraroni, M.' 1 ? primary 'Bazzicalupi, C.' 2 ? primary 'Bilia, A.R.' 3 ? primary 'Gratteri, P.' 4 ? # _cell.length_a 30.370 _cell.length_b 30.370 _cell.length_c 118.260 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3NP6 _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 3NP6 _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*TP*AP*CP*G)-3'" 1809.217 4 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn BERBERINE 336.361 1 ? ? ? ? 4 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic DNA' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3NP6 _struct_ref.pdbx_db_accession 3NP6 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NP6 A 1 ? 6 ? 3NP6 1 ? 6 ? 1 6 2 1 3NP6 B 1 ? 6 ? 3NP6 7 ? 12 ? 7 12 3 1 3NP6 C 1 ? 6 ? 3NP6 1 ? 6 ? 1 6 4 1 3NP6 D 1 ? 6 ? 3NP6 7 ? 12 ? 7 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BER non-polymer . BERBERINE ? 'C20 H18 N O4 1' 336.361 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.crystals_number 1 _exptl.entry_id 3NP6 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 43.46 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 296 _exptl_crystal_grow.pdbx_details 'MPD, MgCl2, NaCl, pH 6.5, vapor diffusion, temperature 296K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'OXFORD ONYX CCD' _diffrn_detector.pdbx_collection_date 2010-01-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.542 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'SEALED TUBE' _diffrn_source.type 'OXFORD DIFFRACTION ENHANCE ULTRA' _diffrn_source.pdbx_wavelength_list 1.542 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3NP6 _reflns.d_resolution_high 2.300 _reflns.number_obs 3159 _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_netI_over_sigmaI 29.040 _reflns.percent_possible_obs 100.000 _reflns.B_iso_Wilson_estimate 43.450 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.4200 _reflns.number_all ? _reflns.pdbx_Rsym_value 0.076 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.300 2.400 7573 ? 653 ? 0.558 4.8 ? ? ? ? ? 654 ? ? 0.325 ? ? 99.800 0.584 ? 1 1 2.400 2.600 17213 ? 1019 ? 0.384 9.1 ? ? ? ? ? 1019 ? ? 0.153 ? ? 100.000 0.396 ? 2 1 2.600 2.800 14237 ? 738 ? 0.220 14.8 ? ? ? ? ? 738 ? ? 0.085 ? ? 100.000 0.226 ? 3 1 2.800 2.900 6047 ? 291 ? 0.177 18.7 ? ? ? ? ? 291 ? ? 0.060 ? ? 100.000 0.181 ? 4 1 2.900 3.000 5761 ? 273 ? 0.139 23.9 ? ? ? ? ? 273 ? ? 0.049 ? ? 100.000 0.142 ? 5 1 3.000 3.120 5891 ? 277 ? 0.104 29.6 ? ? ? ? ? 277 ? ? 0.038 ? ? 100.000 0.106 ? 6 1 3.120 3.270 6092 ? 278 ? 0.065 41.4 ? ? ? ? ? 278 ? ? 0.020 ? ? 100.000 0.067 ? 7 1 3.270 3.440 5881 ? 272 ? 0.059 46.1 ? ? ? ? ? 272 ? ? 0.018 ? ? 100.000 0.061 ? 8 1 3.440 3.650 5846 ? 263 ? 0.054 51.3 ? ? ? ? ? 263 ? ? 0.015 ? ? 100.000 0.056 ? 9 1 3.650 3.940 6152 ? 277 ? 0.060 52.3 ? ? ? ? ? 277 ? ? 0.017 ? ? 100.000 0.061 ? 10 1 3.940 4.330 6018 ? 285 ? 0.056 55.2 ? ? ? ? ? 285 ? ? 0.015 ? ? 100.000 0.057 ? 11 1 4.330 4.960 5571 ? 259 ? 0.056 55.4 ? ? ? ? ? 259 ? ? 0.017 ? ? 100.000 0.058 ? 12 1 4.960 6.250 5776 ? 272 ? 0.057 56.4 ? ? ? ? ? 272 ? ? 0.015 ? ? 100.000 0.058 ? 13 1 6.250 10.000 4592 ? 211 ? 0.049 61.8 ? ? ? ? ? 211 ? ? 0.013 ? ? 100.000 0.050 ? 14 1 10.000 15.000 863 ? 38 ? 0.041 64.6 ? ? ? ? ? 38 ? ? 0.010 ? ? 100.000 0.041 ? 15 1 15.000 39.420 351 ? 19 ? 0.030 61.0 ? ? ? ? ? 19 ? ? 0.010 ? ? 100.000 0.031 ? 16 1 # _refine.entry_id 3NP6 _refine.ls_d_res_high 2.3000 _refine.ls_d_res_low 39.4200 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9400 _refine.ls_number_reflns_obs 3153 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2387 _refine.ls_R_factor_R_work 0.2361 _refine.ls_wR_factor_R_work 0.2204 _refine.ls_R_factor_R_free 0.3014 _refine.ls_wR_factor_R_free 0.2752 _refine.ls_percent_reflns_R_free 4.4000 _refine.ls_number_reflns_R_free 139 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.1113 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc 0.9380 _refine.correlation_coeff_Fo_to_Fc_free 0.8820 _refine.overall_SU_R_Cruickshank_DPI 0.0769 _refine.overall_SU_R_free 0.0594 _refine.pdbx_overall_ESU_R_Free 0.0590 _refine.overall_SU_ML 0.2120 _refine.overall_SU_B ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1XCS' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7005 _refine.B_iso_max 36.440 _refine.B_iso_min 2.000 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 450 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 477 _refine_hist.d_res_high 2.3000 _refine_hist.d_res_low 39.4200 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 531 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 813 1.842 3.000 ? 'X-RAY DIFFRACTION' ? ;CHIRAL-CENTER RESTRAINTS (A'*3) ; 87 0.091 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 258 0.007 0.020 ? 'X-RAY DIFFRACTION' ? ;MAIN-CHAIN BOND REFINED ATOMS (A'*2) ; 3 0.189 1.500 ? 'X-RAY DIFFRACTION' ? ;MAIN-CHAIN ANGLE REFINED ATOMS (A'*2) ; 4 0.358 2.000 ? 'X-RAY DIFFRACTION' ? ;SIDE-CHAIN BOND REFINED ATOMS (A'*2) ; 528 1.454 3.000 ? 'X-RAY DIFFRACTION' ? ;SIDE-CHAIN ANGLE REFINED ATOMS (A'*2) ; 809 2.547 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.3000 _refine_ls_shell.d_res_low 2.3600 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.5400 _refine_ls_shell.number_reflns_R_work 212 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.4410 _refine_ls_shell.R_factor_R_free 0.3850 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 6 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 218 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3NP6 _struct.title 'The crystal structure of Berberine bound to DNA d(CGTACG)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NP6 _struct_keywords.text 'DRUG-DNA COMPLEX, DOUBLE HELIX, B-DNA, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E CA . CA ? ? ? 1_555 B DG 6 OP1 ? ? B CA 1 B DG 12 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc2 metalc ? ? E CA . CA ? ? ? 1_555 D DG 6 OP1 ? ? B CA 1 D DG 12 1_555 ? ? ? ? ? ? ? 2.464 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 D DG 6 N3 ? ? A DG 2 D DG 12 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N3 ? ? ? 1_555 D DG 6 N2 ? ? A DG 2 D DG 12 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DG 2 N3 ? ? B DG 12 C DG 2 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog14 hydrog ? ? B DG 6 N3 ? ? ? 1_555 C DG 2 N2 ? ? B DG 12 C DG 2 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog15 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 3 D DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 3 D DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 4 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 3 O4 ? ? C DA 4 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C BER 7 ? 8 'BINDING SITE FOR RESIDUE BER C 7' AC2 Software B CA 1 ? 3 'BINDING SITE FOR RESIDUE CA B 1' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DC A 5 ? DC A 5 . ? 1_665 ? 2 AC1 8 DG A 6 ? DG A 6 . ? 1_665 ? 3 AC1 8 DC B 1 ? DC B 7 . ? 5_665 ? 4 AC1 8 DG B 2 ? DG B 8 . ? 1_665 ? 5 AC1 8 DC C 5 ? DC C 5 . ? 1_555 ? 6 AC1 8 DG C 6 ? DG C 6 . ? 1_555 ? 7 AC1 8 DC D 1 ? DC D 7 . ? 5_675 ? 8 AC1 8 DG D 2 ? DG D 8 . ? 1_555 ? 9 AC2 3 DG B 6 ? DG B 12 . ? 1_555 ? 10 AC2 3 DG D 6 ? DG D 12 . ? 1_555 ? 11 AC2 3 DG D 6 ? DG D 12 . ? 4_555 ? # _atom_sites.entry_id 3NP6 _atom_sites.fract_transf_matrix[1][1] 0.032927 _atom_sites.fract_transf_matrix[1][2] 0.019011 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.038021 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008456 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O3'" . DC A 1 1 ? 7.373 16.624 17.454 1.00 33.62 ? 1 DC A "O3'" 1 ATOM 2 P P . DG A 1 2 ? 7.876 18.042 16.921 1.00 33.77 ? 2 DG A P 1 ATOM 3 O OP1 . DG A 1 2 ? 9.317 18.177 17.241 1.00 33.50 ? 2 DG A OP1 1 ATOM 4 O OP2 . DG A 1 2 ? 6.896 19.057 17.372 1.00 33.95 ? 2 DG A OP2 1 ATOM 5 O "O5'" . DG A 1 2 ? 7.731 17.877 15.340 1.00 32.10 ? 2 DG A "O5'" 1 ATOM 6 C "C5'" . DG A 1 2 ? 7.384 18.985 14.524 1.00 28.87 ? 2 DG A "C5'" 1 ATOM 7 C "C4'" . DG A 1 2 ? 6.873 18.501 13.180 1.00 26.17 ? 2 DG A "C4'" 1 ATOM 8 O "O4'" . DG A 1 2 ? 7.875 17.686 12.529 1.00 23.99 ? 2 DG A "O4'" 1 ATOM 9 C "C3'" . DG A 1 2 ? 5.608 17.661 13.228 1.00 25.52 ? 2 DG A "C3'" 1 ATOM 10 O "O3'" . DG A 1 2 ? 4.756 18.144 12.200 1.00 26.41 ? 2 DG A "O3'" 1 ATOM 11 C "C2'" . DG A 1 2 ? 6.109 16.235 12.993 1.00 23.90 ? 2 DG A "C2'" 1 ATOM 12 C "C1'" . DG A 1 2 ? 7.352 16.440 12.134 1.00 21.80 ? 2 DG A "C1'" 1 ATOM 13 N N9 . DG A 1 2 ? 8.456 15.507 12.339 1.00 18.94 ? 2 DG A N9 1 ATOM 14 C C8 . DG A 1 2 ? 9.051 15.226 13.543 1.00 17.76 ? 2 DG A C8 1 ATOM 15 N N7 . DG A 1 2 ? 10.029 14.378 13.463 1.00 16.95 ? 2 DG A N7 1 ATOM 16 C C5 . DG A 1 2 ? 10.108 14.083 12.113 1.00 16.20 ? 2 DG A C5 1 ATOM 17 C C6 . DG A 1 2 ? 10.997 13.218 11.435 1.00 14.96 ? 2 DG A C6 1 ATOM 18 O O6 . DG A 1 2 ? 11.904 12.527 11.923 1.00 14.75 ? 2 DG A O6 1 ATOM 19 N N1 . DG A 1 2 ? 10.752 13.189 10.063 1.00 14.19 ? 2 DG A N1 1 ATOM 20 C C2 . DG A 1 2 ? 9.770 13.908 9.430 1.00 14.43 ? 2 DG A C2 1 ATOM 21 N N2 . DG A 1 2 ? 9.693 13.748 8.104 1.00 13.38 ? 2 DG A N2 1 ATOM 22 N N3 . DG A 1 2 ? 8.928 14.731 10.056 1.00 16.02 ? 2 DG A N3 1 ATOM 23 C C4 . DG A 1 2 ? 9.148 14.771 11.398 1.00 16.96 ? 2 DG A C4 1 ATOM 24 P P . DT A 1 3 ? 3.192 17.830 12.151 1.00 26.95 ? 3 DT A P 1 ATOM 25 O OP1 . DT A 1 3 ? 2.503 19.041 11.663 1.00 27.03 ? 3 DT A OP1 1 ATOM 26 O OP2 . DT A 1 3 ? 2.767 17.188 13.410 1.00 28.04 ? 3 DT A OP2 1 ATOM 27 O "O5'" . DT A 1 3 ? 3.125 16.685 11.043 1.00 26.90 ? 3 DT A "O5'" 1 ATOM 28 C "C5'" . DT A 1 3 ? 3.713 16.855 9.764 1.00 24.70 ? 3 DT A "C5'" 1 ATOM 29 C "C4'" . DT A 1 3 ? 3.941 15.509 9.108 1.00 23.27 ? 3 DT A "C4'" 1 ATOM 30 O "O4'" . DT A 1 3 ? 5.041 14.829 9.744 1.00 22.25 ? 3 DT A "O4'" 1 ATOM 31 C "C3'" . DT A 1 3 ? 2.782 14.522 9.163 1.00 22.83 ? 3 DT A "C3'" 1 ATOM 32 O "O3'" . DT A 1 3 ? 2.362 14.319 7.824 1.00 23.76 ? 3 DT A "O3'" 1 ATOM 33 C "C2'" . DT A 1 3 ? 3.372 13.270 9.817 1.00 21.49 ? 3 DT A "C2'" 1 ATOM 34 C "C1'" . DT A 1 3 ? 4.848 13.458 9.515 1.00 20.49 ? 3 DT A "C1'" 1 ATOM 35 N N1 . DT A 1 3 ? 5.840 12.735 10.359 1.00 18.35 ? 3 DT A N1 1 ATOM 36 C C2 . DT A 1 3 ? 6.777 11.921 9.752 1.00 16.91 ? 3 DT A C2 1 ATOM 37 O O2 . DT A 1 3 ? 6.848 11.713 8.560 1.00 15.96 ? 3 DT A O2 1 ATOM 38 N N3 . DT A 1 3 ? 7.647 11.321 10.612 1.00 16.77 ? 3 DT A N3 1 ATOM 39 C C4 . DT A 1 3 ? 7.690 11.445 11.984 1.00 16.72 ? 3 DT A C4 1 ATOM 40 O O4 . DT A 1 3 ? 8.534 10.850 12.642 1.00 17.08 ? 3 DT A O4 1 ATOM 41 C C5 . DT A 1 3 ? 6.692 12.313 12.561 1.00 17.14 ? 3 DT A C5 1 ATOM 42 C C7 . DT A 1 3 ? 6.621 12.540 14.043 1.00 17.65 ? 3 DT A C7 1 ATOM 43 C C6 . DT A 1 3 ? 5.828 12.909 11.729 1.00 17.74 ? 3 DT A C6 1 ATOM 44 P P . DA A 1 4 ? 1.181 13.331 7.411 1.00 23.52 ? 4 DA A P 1 ATOM 45 O OP1 . DA A 1 4 ? 0.450 13.937 6.285 1.00 24.57 ? 4 DA A OP1 1 ATOM 46 O OP2 . DA A 1 4 ? 0.432 12.884 8.604 1.00 24.00 ? 4 DA A OP2 1 ATOM 47 O "O5'" . DA A 1 4 ? 2.044 12.115 6.867 1.00 22.14 ? 4 DA A "O5'" 1 ATOM 48 C "C5'" . DA A 1 4 ? 2.591 12.149 5.568 1.00 19.65 ? 4 DA A "C5'" 1 ATOM 49 C "C4'" . DA A 1 4 ? 3.265 10.821 5.346 1.00 18.23 ? 4 DA A "C4'" 1 ATOM 50 O "O4'" . DA A 1 4 ? 4.072 10.595 6.514 1.00 16.45 ? 4 DA A "O4'" 1 ATOM 51 C "C3'" . DA A 1 4 ? 2.330 9.619 5.268 1.00 18.47 ? 4 DA A "C3'" 1 ATOM 52 O "O3'" . DA A 1 4 ? 2.606 8.882 4.084 1.00 21.05 ? 4 DA A "O3'" 1 ATOM 53 C "C2'" . DA A 1 4 ? 2.630 8.804 6.526 1.00 16.05 ? 4 DA A "C2'" 1 ATOM 54 C "C1'" . DA A 1 4 ? 4.053 9.231 6.830 1.00 12.98 ? 4 DA A "C1'" 1 ATOM 55 N N9 . DA A 1 4 ? 4.452 9.147 8.222 1.00 7.89 ? 4 DA A N9 1 ATOM 56 C C8 . DA A 1 4 ? 3.846 9.733 9.297 1.00 5.77 ? 4 DA A C8 1 ATOM 57 N N7 . DA A 1 4 ? 4.441 9.489 10.435 1.00 4.42 ? 4 DA A N7 1 ATOM 58 C C5 . DA A 1 4 ? 5.522 8.702 10.071 1.00 2.00 ? 4 DA A C5 1 ATOM 59 C C6 . DA A 1 4 ? 6.549 8.102 10.802 1.00 2.00 ? 4 DA A C6 1 ATOM 60 N N6 . DA A 1 4 ? 6.637 8.224 12.116 1.00 2.00 ? 4 DA A N6 1 ATOM 61 N N1 . DA A 1 4 ? 7.481 7.359 10.162 1.00 2.00 ? 4 DA A N1 1 ATOM 62 C C2 . DA A 1 4 ? 7.368 7.232 8.834 1.00 2.11 ? 4 DA A C2 1 ATOM 63 N N3 . DA A 1 4 ? 6.445 7.753 8.017 1.00 3.99 ? 4 DA A N3 1 ATOM 64 C C4 . DA A 1 4 ? 5.544 8.478 8.708 1.00 4.59 ? 4 DA A C4 1 ATOM 65 P P . DC A 1 5 ? 1.599 7.758 3.563 1.00 21.91 ? 5 DC A P 1 ATOM 66 O OP1 . DC A 1 5 ? 1.717 7.695 2.093 1.00 22.89 ? 5 DC A OP1 1 ATOM 67 O OP2 . DC A 1 5 ? 0.286 7.940 4.211 1.00 22.16 ? 5 DC A OP2 1 ATOM 68 O "O5'" . DC A 1 5 ? 2.240 6.442 4.165 1.00 22.35 ? 5 DC A "O5'" 1 ATOM 69 C "C5'" . DC A 1 5 ? 3.564 6.076 3.832 1.00 22.86 ? 5 DC A "C5'" 1 ATOM 70 C "C4'" . DC A 1 5 ? 3.988 5.014 4.812 1.00 23.27 ? 5 DC A "C4'" 1 ATOM 71 O "O4'" . DC A 1 5 ? 4.197 5.609 6.105 1.00 22.63 ? 5 DC A "O4'" 1 ATOM 72 C "C3'" . DC A 1 5 ? 2.877 4.013 5.064 1.00 24.31 ? 5 DC A "C3'" 1 ATOM 73 O "O3'" . DC A 1 5 ? 3.091 2.912 4.214 1.00 25.03 ? 5 DC A "O3'" 1 ATOM 74 C "C2'" . DC A 1 5 ? 2.989 3.663 6.549 1.00 23.53 ? 5 DC A "C2'" 1 ATOM 75 C "C1'" . DC A 1 5 ? 4.125 4.557 7.033 1.00 21.81 ? 5 DC A "C1'" 1 ATOM 76 N N1 . DC A 1 5 ? 3.953 5.081 8.420 1.00 20.17 ? 5 DC A N1 1 ATOM 77 C C2 . DC A 1 5 ? 4.918 4.754 9.376 1.00 19.74 ? 5 DC A C2 1 ATOM 78 O O2 . DC A 1 5 ? 5.883 4.055 9.049 1.00 19.94 ? 5 DC A O2 1 ATOM 79 N N3 . DC A 1 5 ? 4.771 5.215 10.643 1.00 19.41 ? 5 DC A N3 1 ATOM 80 C C4 . DC A 1 5 ? 3.725 5.972 10.971 1.00 18.81 ? 5 DC A C4 1 ATOM 81 N N4 . DC A 1 5 ? 3.647 6.396 12.235 1.00 18.38 ? 5 DC A N4 1 ATOM 82 C C5 . DC A 1 5 ? 2.728 6.321 10.012 1.00 19.31 ? 5 DC A C5 1 ATOM 83 C C6 . DC A 1 5 ? 2.879 5.857 8.762 1.00 19.78 ? 5 DC A C6 1 ATOM 84 P P . DG A 1 6 ? 1.927 1.876 3.943 1.00 25.59 ? 6 DG A P 1 ATOM 85 O OP1 . DG A 1 6 ? 2.259 1.234 2.658 1.00 27.15 ? 6 DG A OP1 1 ATOM 86 O OP2 . DG A 1 6 ? 0.611 2.519 4.163 1.00 24.51 ? 6 DG A OP2 1 ATOM 87 O "O5'" . DG A 1 6 ? 2.184 0.805 5.096 1.00 27.17 ? 6 DG A "O5'" 1 ATOM 88 C "C5'" . DG A 1 6 ? 3.120 -0.249 4.888 1.00 28.16 ? 6 DG A "C5'" 1 ATOM 89 C "C4'" . DG A 1 6 ? 2.548 -1.572 5.356 1.00 29.11 ? 6 DG A "C4'" 1 ATOM 90 O "O4'" . DG A 1 6 ? 2.248 -1.436 6.762 1.00 29.93 ? 6 DG A "O4'" 1 ATOM 91 C "C3'" . DG A 1 6 ? 1.240 -1.992 4.700 1.00 29.28 ? 6 DG A "C3'" 1 ATOM 92 O "O3'" . DG A 1 6 ? 1.483 -2.790 3.560 1.00 29.89 ? 6 DG A "O3'" 1 ATOM 93 C "C2'" . DG A 1 6 ? 0.587 -2.802 5.806 1.00 29.78 ? 6 DG A "C2'" 1 ATOM 94 C "C1'" . DG A 1 6 ? 0.999 -2.018 7.049 1.00 30.23 ? 6 DG A "C1'" 1 ATOM 95 N N9 . DG A 1 6 ? 0.072 -0.970 7.479 1.00 30.98 ? 6 DG A N9 1 ATOM 96 C C8 . DG A 1 6 ? -0.983 -0.443 6.774 1.00 31.60 ? 6 DG A C8 1 ATOM 97 N N7 . DG A 1 6 ? -1.642 0.478 7.413 1.00 32.21 ? 6 DG A N7 1 ATOM 98 C C5 . DG A 1 6 ? -0.980 0.574 8.627 1.00 32.53 ? 6 DG A C5 1 ATOM 99 C C6 . DG A 1 6 ? -1.242 1.413 9.740 1.00 32.85 ? 6 DG A C6 1 ATOM 100 O O6 . DG A 1 6 ? -2.141 2.257 9.860 1.00 33.22 ? 6 DG A O6 1 ATOM 101 N N1 . DG A 1 6 ? -0.339 1.200 10.782 1.00 32.46 ? 6 DG A N1 1 ATOM 102 C C2 . DG A 1 6 ? 0.694 0.293 10.745 1.00 31.95 ? 6 DG A C2 1 ATOM 103 N N2 . DG A 1 6 ? 1.458 0.227 11.840 1.00 32.27 ? 6 DG A N2 1 ATOM 104 N N3 . DG A 1 6 ? 0.951 -0.499 9.709 1.00 32.18 ? 6 DG A N3 1 ATOM 105 C C4 . DG A 1 6 ? 0.078 -0.309 8.686 1.00 31.79 ? 6 DG A C4 1 ATOM 106 O "O5'" . DC B 1 1 ? 15.161 4.258 21.543 1.00 28.71 ? 7 DC B "O5'" 1 ATOM 107 C "C5'" . DC B 1 1 ? 14.834 2.988 20.981 1.00 27.44 ? 7 DC B "C5'" 1 ATOM 108 C "C4'" . DC B 1 1 ? 13.551 2.410 21.562 1.00 26.23 ? 7 DC B "C4'" 1 ATOM 109 O "O4'" . DC B 1 1 ? 13.775 1.981 22.927 1.00 26.06 ? 7 DC B "O4'" 1 ATOM 110 C "C3'" . DC B 1 1 ? 12.340 3.339 21.607 1.00 26.04 ? 7 DC B "C3'" 1 ATOM 111 O "O3'" . DC B 1 1 ? 11.181 2.617 21.201 1.00 25.84 ? 7 DC B "O3'" 1 ATOM 112 C "C2'" . DC B 1 1 ? 12.251 3.730 23.079 1.00 25.67 ? 7 DC B "C2'" 1 ATOM 113 C "C1'" . DC B 1 1 ? 12.705 2.430 23.730 1.00 25.36 ? 7 DC B "C1'" 1 ATOM 114 N N1 . DC B 1 1 ? 13.195 2.525 25.133 1.00 24.70 ? 7 DC B N1 1 ATOM 115 C C2 . DC B 1 1 ? 12.500 1.888 26.173 1.00 23.93 ? 7 DC B C2 1 ATOM 116 O O2 . DC B 1 1 ? 11.465 1.251 25.940 1.00 22.76 ? 7 DC B O2 1 ATOM 117 N N3 . DC B 1 1 ? 12.996 1.995 27.433 1.00 24.55 ? 7 DC B N3 1 ATOM 118 C C4 . DC B 1 1 ? 14.117 2.692 27.670 1.00 24.89 ? 7 DC B C4 1 ATOM 119 N N4 . DC B 1 1 ? 14.562 2.768 28.926 1.00 25.00 ? 7 DC B N4 1 ATOM 120 C C5 . DC B 1 1 ? 14.837 3.344 26.628 1.00 25.21 ? 7 DC B C5 1 ATOM 121 C C6 . DC B 1 1 ? 14.343 3.228 25.391 1.00 25.25 ? 7 DC B C6 1 ATOM 122 P P . DG B 1 2 ? 10.425 2.912 19.826 1.00 25.10 ? 8 DG B P 1 ATOM 123 O OP1 . DG B 1 2 ? 10.115 4.351 19.752 1.00 25.91 ? 8 DG B OP1 1 ATOM 124 O OP2 . DG B 1 2 ? 9.331 1.927 19.720 1.00 26.33 ? 8 DG B OP2 1 ATOM 125 O "O5'" . DG B 1 2 ? 11.510 2.582 18.712 1.00 23.94 ? 8 DG B "O5'" 1 ATOM 126 C "C5'" . DG B 1 2 ? 11.796 1.253 18.322 1.00 22.22 ? 8 DG B "C5'" 1 ATOM 127 C "C4'" . DG B 1 2 ? 11.655 1.069 16.824 1.00 20.73 ? 8 DG B "C4'" 1 ATOM 128 O "O4'" . DG B 1 2 ? 10.259 1.149 16.495 1.00 19.85 ? 8 DG B "O4'" 1 ATOM 129 C "C3'" . DG B 1 2 ? 12.321 2.127 15.961 1.00 20.32 ? 8 DG B "C3'" 1 ATOM 130 O "O3'" . DG B 1 2 ? 13.636 1.707 15.655 1.00 21.31 ? 8 DG B "O3'" 1 ATOM 131 C "C2'" . DG B 1 2 ? 11.449 2.172 14.712 1.00 19.50 ? 8 DG B "C2'" 1 ATOM 132 C "C1'" . DG B 1 2 ? 10.102 1.662 15.188 1.00 18.40 ? 8 DG B "C1'" 1 ATOM 133 N N9 . DG B 1 2 ? 9.042 2.662 15.219 1.00 16.33 ? 8 DG B N9 1 ATOM 134 C C8 . DG B 1 2 ? 8.521 3.281 16.325 1.00 15.46 ? 8 DG B C8 1 ATOM 135 N N7 . DG B 1 2 ? 7.568 4.114 16.053 1.00 15.19 ? 8 DG B N7 1 ATOM 136 C C5 . DG B 1 2 ? 7.441 4.039 14.679 1.00 14.54 ? 8 DG B C5 1 ATOM 137 C C6 . DG B 1 2 ? 6.563 4.719 13.814 1.00 14.02 ? 8 DG B C6 1 ATOM 138 O O6 . DG B 1 2 ? 5.701 5.547 14.121 1.00 15.05 ? 8 DG B O6 1 ATOM 139 N N1 . DG B 1 2 ? 6.757 4.356 12.484 1.00 13.72 ? 8 DG B N1 1 ATOM 140 C C2 . DG B 1 2 ? 7.693 3.450 12.045 1.00 13.61 ? 8 DG B C2 1 ATOM 141 N N2 . DG B 1 2 ? 7.752 3.212 10.729 1.00 13.66 ? 8 DG B N2 1 ATOM 142 N N3 . DG B 1 2 ? 8.522 2.805 12.849 1.00 14.66 ? 8 DG B N3 1 ATOM 143 C C4 . DG B 1 2 ? 8.339 3.148 14.149 1.00 15.09 ? 8 DG B C4 1 ATOM 144 P P . DT B 1 3 ? 14.720 2.716 15.065 1.00 21.34 ? 9 DT B P 1 ATOM 145 O OP1 . DT B 1 3 ? 16.039 2.070 15.171 1.00 22.36 ? 9 DT B OP1 1 ATOM 146 O OP2 . DT B 1 3 ? 14.479 4.057 15.633 1.00 21.53 ? 9 DT B OP2 1 ATOM 147 O "O5'" . DT B 1 3 ? 14.351 2.754 13.520 1.00 20.90 ? 9 DT B "O5'" 1 ATOM 148 C "C5'" . DT B 1 3 ? 14.720 1.684 12.667 1.00 18.67 ? 9 DT B "C5'" 1 ATOM 149 C "C4'" . DT B 1 3 ? 14.230 1.992 11.268 1.00 16.97 ? 9 DT B "C4'" 1 ATOM 150 O "O4'" . DT B 1 3 ? 12.882 2.521 11.319 1.00 15.79 ? 9 DT B "O4'" 1 ATOM 151 C "C3'" . DT B 1 3 ? 15.063 3.023 10.536 1.00 16.67 ? 9 DT B "C3'" 1 ATOM 152 O "O3'" . DT B 1 3 ? 15.306 2.534 9.232 1.00 17.48 ? 9 DT B "O3'" 1 ATOM 153 C "C2'" . DT B 1 3 ? 14.198 4.283 10.572 1.00 16.24 ? 9 DT B "C2'" 1 ATOM 154 C "C1'" . DT B 1 3 ? 12.781 3.738 10.619 1.00 14.51 ? 9 DT B "C1'" 1 ATOM 155 N N1 . DT B 1 3 ? 11.792 4.618 11.331 1.00 12.73 ? 9 DT B N1 1 ATOM 156 C C2 . DT B 1 3 ? 10.712 5.147 10.652 1.00 11.24 ? 9 DT B C2 1 ATOM 157 O O2 . DT B 1 3 ? 10.477 4.968 9.475 1.00 10.31 ? 9 DT B O2 1 ATOM 158 N N3 . DT B 1 3 ? 9.887 5.922 11.421 1.00 11.34 ? 9 DT B N3 1 ATOM 159 C C4 . DT B 1 3 ? 10.012 6.226 12.762 1.00 10.97 ? 9 DT B C4 1 ATOM 160 O O4 . DT B 1 3 ? 9.201 6.940 13.347 1.00 11.64 ? 9 DT B O4 1 ATOM 161 C C5 . DT B 1 3 ? 11.154 5.644 13.411 1.00 11.08 ? 9 DT B C5 1 ATOM 162 C C7 . DT B 1 3 ? 11.408 5.892 14.870 1.00 11.66 ? 9 DT B C7 1 ATOM 163 C C6 . DT B 1 3 ? 11.973 4.886 12.676 1.00 11.69 ? 9 DT B C6 1 ATOM 164 P P . DA B 1 4 ? 15.991 3.409 8.092 1.00 16.63 ? 10 DA B P 1 ATOM 165 O OP1 . DA B 1 4 ? 16.551 2.467 7.111 1.00 17.48 ? 10 DA B OP1 1 ATOM 166 O OP2 . DA B 1 4 ? 16.858 4.436 8.699 1.00 17.93 ? 10 DA B OP2 1 ATOM 167 O "O5'" . DA B 1 4 ? 14.728 4.148 7.483 1.00 15.03 ? 10 DA B "O5'" 1 ATOM 168 C "C5'" . DA B 1 4 ? 14.015 3.601 6.397 1.00 11.40 ? 10 DA B "C5'" 1 ATOM 169 C "C4'" . DA B 1 4 ? 13.393 4.726 5.596 1.00 7.95 ? 10 DA B "C4'" 1 ATOM 170 O "O4'" . DA B 1 4 ? 12.498 5.484 6.441 1.00 4.92 ? 10 DA B "O4'" 1 ATOM 171 C "C3'" . DA B 1 4 ? 14.388 5.725 5.028 1.00 8.06 ? 10 DA B "C3'" 1 ATOM 172 O "O3'" . DA B 1 4 ? 13.992 5.983 3.698 1.00 12.84 ? 10 DA B "O3'" 1 ATOM 173 C "C2'" . DA B 1 4 ? 14.263 6.947 5.946 1.00 2.87 ? 10 DA B "C2'" 1 ATOM 174 C "C1'" . DA B 1 4 ? 12.829 6.868 6.451 1.00 2.00 ? 10 DA B "C1'" 1 ATOM 175 N N9 . DA B 1 4 ? 12.568 7.372 7.807 1.00 2.00 ? 10 DA B N9 1 ATOM 176 C C8 . DA B 1 4 ? 13.277 7.147 8.948 1.00 2.00 ? 10 DA B C8 1 ATOM 177 N N7 . DA B 1 4 ? 12.794 7.706 10.028 1.00 2.00 ? 10 DA B N7 1 ATOM 178 C C5 . DA B 1 4 ? 11.661 8.354 9.583 1.00 2.00 ? 10 DA B C5 1 ATOM 179 C C6 . DA B 1 4 ? 10.724 9.169 10.241 1.00 2.00 ? 10 DA B C6 1 ATOM 180 N N6 . DA B 1 4 ? 10.820 9.388 11.549 1.00 2.00 ? 10 DA B N6 1 ATOM 181 N N1 . DA B 1 4 ? 9.691 9.699 9.553 1.00 2.00 ? 10 DA B N1 1 ATOM 182 C C2 . DA B 1 4 ? 9.696 9.410 8.255 1.00 2.00 ? 10 DA B C2 1 ATOM 183 N N3 . DA B 1 4 ? 10.526 8.689 7.509 1.00 2.00 ? 10 DA B N3 1 ATOM 184 C C4 . DA B 1 4 ? 11.519 8.175 8.235 1.00 2.00 ? 10 DA B C4 1 ATOM 185 P P . DC B 1 5 ? 14.884 6.796 2.657 1.00 15.35 ? 11 DC B P 1 ATOM 186 O OP1 . DC B 1 5 ? 14.501 6.314 1.312 1.00 16.88 ? 11 DC B OP1 1 ATOM 187 O OP2 . DC B 1 5 ? 16.299 6.818 3.066 1.00 15.46 ? 11 DC B OP2 1 ATOM 188 O "O5'" . DC B 1 5 ? 14.325 8.266 2.866 1.00 14.87 ? 11 DC B "O5'" 1 ATOM 189 C "C5'" . DC B 1 5 ? 13.023 8.600 2.452 1.00 13.22 ? 11 DC B "C5'" 1 ATOM 190 C "C4'" . DC B 1 5 ? 12.697 9.986 2.956 1.00 12.23 ? 11 DC B "C4'" 1 ATOM 191 O "O4'" . DC B 1 5 ? 12.613 9.947 4.399 1.00 10.52 ? 11 DC B "O4'" 1 ATOM 192 C "C3'" . DC B 1 5 ? 13.729 11.065 2.633 1.00 12.49 ? 11 DC B "C3'" 1 ATOM 193 O "O3'" . DC B 1 5 ? 13.066 12.199 2.077 1.00 14.45 ? 11 DC B "O3'" 1 ATOM 194 C "C2'" . DC B 1 5 ? 14.329 11.384 3.995 1.00 10.23 ? 11 DC B "C2'" 1 ATOM 195 C "C1'" . DC B 1 5 ? 13.085 11.188 4.843 1.00 6.65 ? 11 DC B "C1'" 1 ATOM 196 N N1 . DC B 1 5 ? 13.327 11.118 6.286 1.00 3.24 ? 11 DC B N1 1 ATOM 197 C C2 . DC B 1 5 ? 12.477 11.783 7.177 1.00 2.00 ? 11 DC B C2 1 ATOM 198 O O2 . DC B 1 5 ? 11.523 12.476 6.804 1.00 3.57 ? 11 DC B O2 1 ATOM 199 N N3 . DC B 1 5 ? 12.782 11.697 8.480 1.00 2.00 ? 11 DC B N3 1 ATOM 200 C C4 . DC B 1 5 ? 13.803 10.985 8.928 1.00 2.00 ? 11 DC B C4 1 ATOM 201 N N4 . DC B 1 5 ? 13.987 10.932 10.244 1.00 2.00 ? 11 DC B N4 1 ATOM 202 C C5 . DC B 1 5 ? 14.672 10.279 8.041 1.00 2.00 ? 11 DC B C5 1 ATOM 203 C C6 . DC B 1 5 ? 14.393 10.377 6.732 1.00 2.04 ? 11 DC B C6 1 ATOM 204 P P . DG B 1 6 ? 13.859 13.304 1.259 1.00 14.94 ? 12 DG B P 1 ATOM 205 O OP1 . DG B 1 6 ? 12.843 14.118 0.588 1.00 16.16 ? 12 DG B OP1 1 ATOM 206 O OP2 . DG B 1 6 ? 14.929 12.660 0.478 1.00 15.11 ? 12 DG B OP2 1 ATOM 207 O "O5'" . DG B 1 6 ? 14.549 14.171 2.399 1.00 16.98 ? 12 DG B "O5'" 1 ATOM 208 C "C5'" . DG B 1 6 ? 13.819 15.077 3.204 1.00 18.17 ? 12 DG B "C5'" 1 ATOM 209 C "C4'" . DG B 1 6 ? 14.736 16.147 3.767 1.00 19.82 ? 12 DG B "C4'" 1 ATOM 210 O "O4'" . DG B 1 6 ? 15.872 15.540 4.431 1.00 20.59 ? 12 DG B "O4'" 1 ATOM 211 C "C3'" . DG B 1 6 ? 15.288 17.125 2.740 1.00 20.30 ? 12 DG B "C3'" 1 ATOM 212 O "O3'" . DG B 1 6 ? 14.675 18.376 2.942 1.00 21.65 ? 12 DG B "O3'" 1 ATOM 213 C "C2'" . DG B 1 6 ? 16.777 17.218 3.050 1.00 20.79 ? 12 DG B "C2'" 1 ATOM 214 C "C1'" . DG B 1 6 ? 17.083 15.936 3.815 1.00 21.02 ? 12 DG B "C1'" 1 ATOM 215 N N9 . DG B 1 6 ? 17.545 14.817 2.998 1.00 21.66 ? 12 DG B N9 1 ATOM 216 C C8 . DG B 1 6 ? 17.872 14.831 1.665 1.00 22.21 ? 12 DG B C8 1 ATOM 217 N N7 . DG B 1 6 ? 18.238 13.669 1.204 1.00 22.96 ? 12 DG B N7 1 ATOM 218 C C5 . DG B 1 6 ? 18.150 12.827 2.301 1.00 23.07 ? 12 DG B C5 1 ATOM 219 C C6 . DG B 1 6 ? 18.422 11.444 2.418 1.00 23.75 ? 12 DG B C6 1 ATOM 220 O O6 . DG B 1 6 ? 18.812 10.670 1.537 1.00 25.08 ? 12 DG B O6 1 ATOM 221 N N1 . DG B 1 6 ? 18.202 10.968 3.712 1.00 23.85 ? 12 DG B N1 1 ATOM 222 C C2 . DG B 1 6 ? 17.769 11.741 4.763 1.00 23.17 ? 12 DG B C2 1 ATOM 223 N N2 . DG B 1 6 ? 17.607 11.129 5.941 1.00 23.68 ? 12 DG B N2 1 ATOM 224 N N3 . DG B 1 6 ? 17.515 13.036 4.663 1.00 23.21 ? 12 DG B N3 1 ATOM 225 C C4 . DG B 1 6 ? 17.724 13.517 3.413 1.00 22.49 ? 12 DG B C4 1 ATOM 226 O "O3'" . DC C 1 1 ? 20.861 10.293 13.990 1.00 30.28 ? 1 DC C "O3'" 1 ATOM 227 P P . DG C 1 2 ? 19.829 9.095 14.230 1.00 30.38 ? 2 DG C P 1 ATOM 228 O OP1 . DG C 1 2 ? 18.741 9.609 15.094 1.00 30.43 ? 2 DG C OP1 1 ATOM 229 O OP2 . DG C 1 2 ? 20.607 7.912 14.652 1.00 30.53 ? 2 DG C OP2 1 ATOM 230 O "O5'" . DG C 1 2 ? 19.228 8.817 12.769 1.00 28.42 ? 2 DG C "O5'" 1 ATOM 231 C "C5'" . DG C 1 2 ? 19.968 8.116 11.767 1.00 24.24 ? 2 DG C "C5'" 1 ATOM 232 C "C4'" . DG C 1 2 ? 19.906 8.781 10.394 1.00 20.71 ? 2 DG C "C4'" 1 ATOM 233 O "O4'" . DG C 1 2 ? 18.721 9.600 10.226 1.00 17.89 ? 2 DG C "O4'" 1 ATOM 234 C "C3'" . DG C 1 2 ? 21.078 9.684 10.058 1.00 20.22 ? 2 DG C "C3'" 1 ATOM 235 O "O3'" . DG C 1 2 ? 21.516 9.321 8.760 1.00 22.65 ? 2 DG C "O3'" 1 ATOM 236 C "C2'" . DG C 1 2 ? 20.498 11.099 10.124 1.00 16.80 ? 2 DG C "C2'" 1 ATOM 237 C "C1'" . DG C 1 2 ? 19.036 10.893 9.745 1.00 12.88 ? 2 DG C "C1'" 1 ATOM 238 N N9 . DG C 1 2 ? 18.055 11.757 10.399 1.00 5.95 ? 2 DG C N9 1 ATOM 239 C C8 . DG C 1 2 ? 17.894 11.859 11.758 1.00 4.07 ? 2 DG C C8 1 ATOM 240 N N7 . DG C 1 2 ? 16.947 12.676 12.109 1.00 2.00 ? 2 DG C N7 1 ATOM 241 C C5 . DG C 1 2 ? 16.431 13.141 10.914 1.00 2.00 ? 2 DG C C5 1 ATOM 242 C C6 . DG C 1 2 ? 15.370 14.055 10.699 1.00 2.00 ? 2 DG C C6 1 ATOM 243 O O6 . DG C 1 2 ? 14.639 14.644 11.494 1.00 2.00 ? 2 DG C O6 1 ATOM 244 N N1 . DG C 1 2 ? 15.115 14.265 9.362 1.00 2.00 ? 2 DG C N1 1 ATOM 245 C C2 . DG C 1 2 ? 15.820 13.680 8.349 1.00 2.00 ? 2 DG C C2 1 ATOM 246 N N2 . DG C 1 2 ? 15.456 14.040 7.118 1.00 2.00 ? 2 DG C N2 1 ATOM 247 N N3 . DG C 1 2 ? 16.828 12.830 8.529 1.00 2.00 ? 2 DG C N3 1 ATOM 248 C C4 . DG C 1 2 ? 17.086 12.584 9.845 1.00 2.00 ? 2 DG C C4 1 ATOM 249 P P . DT C 1 3 ? 22.930 9.778 8.178 1.00 24.51 ? 3 DT C P 1 ATOM 250 O OP1 . DT C 1 3 ? 23.390 8.679 7.312 1.00 25.20 ? 3 DT C OP1 1 ATOM 251 O OP2 . DT C 1 3 ? 23.775 10.273 9.284 1.00 25.21 ? 3 DT C OP2 1 ATOM 252 O "O5'" . DT C 1 3 ? 22.578 11.035 7.261 1.00 24.22 ? 3 DT C "O5'" 1 ATOM 253 C "C5'" . DT C 1 3 ? 21.659 10.888 6.187 1.00 23.52 ? 3 DT C "C5'" 1 ATOM 254 C "C4'" . DT C 1 3 ? 21.133 12.233 5.731 1.00 22.56 ? 3 DT C "C4'" 1 ATOM 255 O "O4'" . DT C 1 3 ? 20.248 12.803 6.728 1.00 22.33 ? 3 DT C "O4'" 1 ATOM 256 C "C3'" . DT C 1 3 ? 22.203 13.285 5.475 1.00 22.61 ? 3 DT C "C3'" 1 ATOM 257 O "O3'" . DT C 1 3 ? 22.118 13.660 4.110 1.00 23.46 ? 3 DT C "O3'" 1 ATOM 258 C "C2'" . DT C 1 3 ? 21.857 14.429 6.433 1.00 21.78 ? 3 DT C "C2'" 1 ATOM 259 C "C1'" . DT C 1 3 ? 20.366 14.205 6.647 1.00 20.25 ? 3 DT C "C1'" 1 ATOM 260 N N1 . DT C 1 3 ? 19.750 14.807 7.862 1.00 18.05 ? 3 DT C N1 1 ATOM 261 C C2 . DT C 1 3 ? 18.707 15.680 7.683 1.00 17.65 ? 3 DT C C2 1 ATOM 262 O O2 . DT C 1 3 ? 18.281 15.988 6.595 1.00 19.03 ? 3 DT C O2 1 ATOM 263 N N3 . DT C 1 3 ? 18.166 16.200 8.825 1.00 16.81 ? 3 DT C N3 1 ATOM 264 C C4 . DT C 1 3 ? 18.559 15.939 10.118 1.00 16.40 ? 3 DT C C4 1 ATOM 265 O O4 . DT C 1 3 ? 17.992 16.467 11.067 1.00 16.21 ? 3 DT C O4 1 ATOM 266 C C5 . DT C 1 3 ? 19.662 15.015 10.251 1.00 16.61 ? 3 DT C C5 1 ATOM 267 C C7 . DT C 1 3 ? 20.186 14.644 11.606 1.00 16.82 ? 3 DT C C7 1 ATOM 268 C C6 . DT C 1 3 ? 20.197 14.499 9.132 1.00 17.25 ? 3 DT C C6 1 ATOM 269 P P . DA C 1 4 ? 23.257 14.521 3.399 1.00 23.02 ? 4 DA C P 1 ATOM 270 O OP1 . DA C 1 4 ? 23.528 13.898 2.093 1.00 24.19 ? 4 DA C OP1 1 ATOM 271 O OP2 . DA C 1 4 ? 24.367 14.766 4.345 1.00 22.96 ? 4 DA C OP2 1 ATOM 272 O "O5'" . DA C 1 4 ? 22.496 15.893 3.151 1.00 22.14 ? 4 DA C "O5'" 1 ATOM 273 C "C5'" . DA C 1 4 ? 21.257 15.912 2.477 1.00 20.61 ? 4 DA C "C5'" 1 ATOM 274 C "C4'" . DA C 1 4 ? 20.641 17.292 2.581 1.00 19.88 ? 4 DA C "C4'" 1 ATOM 275 O "O4'" . DA C 1 4 ? 20.095 17.492 3.909 1.00 19.15 ? 4 DA C "O4'" 1 ATOM 276 C "C3'" . DA C 1 4 ? 21.601 18.447 2.339 1.00 19.57 ? 4 DA C "C3'" 1 ATOM 277 O "O3'" . DA C 1 4 ? 20.971 19.334 1.437 1.00 20.53 ? 4 DA C "O3'" 1 ATOM 278 C "C2'" . DA C 1 4 ? 21.787 19.069 3.723 1.00 18.68 ? 4 DA C "C2'" 1 ATOM 279 C "C1'" . DA C 1 4 ? 20.449 18.768 4.390 1.00 17.09 ? 4 DA C "C1'" 1 ATOM 280 N N9 . DA C 1 4 ? 20.483 18.681 5.847 1.00 14.45 ? 4 DA C N9 1 ATOM 281 C C8 . DA C 1 4 ? 21.359 17.954 6.603 1.00 13.14 ? 4 DA C C8 1 ATOM 282 N N7 . DA C 1 4 ? 21.156 18.044 7.890 1.00 12.14 ? 4 DA C N7 1 ATOM 283 C C5 . DA C 1 4 ? 20.063 18.884 7.985 1.00 11.89 ? 4 DA C C5 1 ATOM 284 C C6 . DA C 1 4 ? 19.349 19.379 9.092 1.00 10.85 ? 4 DA C C6 1 ATOM 285 N N6 . DA C 1 4 ? 19.669 19.071 10.349 1.00 10.48 ? 4 DA C N6 1 ATOM 286 N N1 . DA C 1 4 ? 18.305 20.203 8.855 1.00 11.08 ? 4 DA C N1 1 ATOM 287 C C2 . DA C 1 4 ? 17.991 20.511 7.586 1.00 11.19 ? 4 DA C C2 1 ATOM 288 N N3 . DA C 1 4 ? 18.587 20.102 6.465 1.00 12.34 ? 4 DA C N3 1 ATOM 289 C C4 . DA C 1 4 ? 19.628 19.287 6.735 1.00 12.60 ? 4 DA C C4 1 ATOM 290 P P . DC C 1 5 ? 21.774 20.487 0.694 1.00 20.65 ? 5 DC C P 1 ATOM 291 O OP1 . DC C 1 5 ? 21.046 20.756 -0.561 1.00 21.71 ? 5 DC C OP1 1 ATOM 292 O OP2 . DC C 1 5 ? 23.209 20.148 0.689 1.00 20.81 ? 5 DC C OP2 1 ATOM 293 O "O5'" . DC C 1 5 ? 21.615 21.732 1.662 1.00 20.38 ? 5 DC C "O5'" 1 ATOM 294 C "C5'" . DC C 1 5 ? 20.383 22.402 1.805 1.00 19.26 ? 5 DC C "C5'" 1 ATOM 295 C "C4'" . DC C 1 5 ? 20.464 23.306 3.016 1.00 18.40 ? 5 DC C "C4'" 1 ATOM 296 O "O4'" . DC C 1 5 ? 20.563 22.495 4.212 1.00 17.07 ? 5 DC C "O4'" 1 ATOM 297 C "C3'" . DC C 1 5 ? 21.677 24.237 3.034 1.00 18.53 ? 5 DC C "C3'" 1 ATOM 298 O "O3'" . DC C 1 5 ? 21.228 25.588 3.007 1.00 19.55 ? 5 DC C "O3'" 1 ATOM 299 C "C2'" . DC C 1 5 ? 22.392 23.894 4.338 1.00 17.72 ? 5 DC C "C2'" 1 ATOM 300 C "C1'" . DC C 1 5 ? 21.252 23.283 5.146 1.00 16.30 ? 5 DC C "C1'" 1 ATOM 301 N N1 . DC C 1 5 ? 21.687 22.500 6.346 1.00 13.98 ? 5 DC C N1 1 ATOM 302 C C2 . DC C 1 5 ? 21.037 22.703 7.568 1.00 12.14 ? 5 DC C C2 1 ATOM 303 O O2 . DC C 1 5 ? 20.108 23.510 7.638 1.00 11.36 ? 5 DC C O2 1 ATOM 304 N N3 . DC C 1 5 ? 21.453 22.002 8.651 1.00 11.36 ? 5 DC C N3 1 ATOM 305 C C4 . DC C 1 5 ? 22.461 21.140 8.546 1.00 10.86 ? 5 DC C C4 1 ATOM 306 N N4 . DC C 1 5 ? 22.829 20.474 9.636 1.00 10.62 ? 5 DC C N4 1 ATOM 307 C C5 . DC C 1 5 ? 23.134 20.913 7.311 1.00 11.86 ? 5 DC C C5 1 ATOM 308 C C6 . DC C 1 5 ? 22.722 21.612 6.248 1.00 13.07 ? 5 DC C C6 1 ATOM 309 P P . DG C 1 6 ? 22.236 26.810 2.833 1.00 19.85 ? 6 DG C P 1 ATOM 310 O OP1 . DG C 1 6 ? 21.498 27.870 2.124 1.00 20.76 ? 6 DG C OP1 1 ATOM 311 O OP2 . DG C 1 6 ? 23.514 26.301 2.315 1.00 20.24 ? 6 DG C OP2 1 ATOM 312 O "O5'" . DG C 1 6 ? 22.516 27.282 4.331 1.00 20.47 ? 6 DG C "O5'" 1 ATOM 313 C "C5'" . DG C 1 6 ? 21.654 28.204 4.978 1.00 19.28 ? 6 DG C "C5'" 1 ATOM 314 C "C4'" . DG C 1 6 ? 22.447 29.196 5.803 1.00 19.51 ? 6 DG C "C4'" 1 ATOM 315 O "O4'" . DG C 1 6 ? 23.187 28.498 6.822 1.00 19.41 ? 6 DG C "O4'" 1 ATOM 316 C "C3'" . DG C 1 6 ? 23.513 29.988 5.070 1.00 19.60 ? 6 DG C "C3'" 1 ATOM 317 O "O3'" . DG C 1 6 ? 22.894 31.087 4.436 1.00 20.57 ? 6 DG C "O3'" 1 ATOM 318 C "C2'" . DG C 1 6 ? 24.422 30.425 6.214 1.00 18.97 ? 6 DG C "C2'" 1 ATOM 319 C "C1'" . DG C 1 6 ? 24.277 29.286 7.228 1.00 18.37 ? 6 DG C "C1'" 1 ATOM 320 N N9 . DG C 1 6 ? 25.404 28.364 7.321 1.00 17.83 ? 6 DG C N9 1 ATOM 321 C C8 . DG C 1 6 ? 26.263 27.998 6.318 1.00 17.55 ? 6 DG C C8 1 ATOM 322 N N7 . DG C 1 6 ? 27.174 27.154 6.689 1.00 17.55 ? 6 DG C N7 1 ATOM 323 C C5 . DG C 1 6 ? 26.902 26.937 8.026 1.00 17.09 ? 6 DG C C5 1 ATOM 324 C C6 . DG C 1 6 ? 27.555 26.097 8.956 1.00 17.14 ? 6 DG C C6 1 ATOM 325 O O6 . DG C 1 6 ? 28.534 25.368 8.774 1.00 17.51 ? 6 DG C O6 1 ATOM 326 N N1 . DG C 1 6 ? 26.962 26.159 10.210 1.00 16.98 ? 6 DG C N1 1 ATOM 327 C C2 . DG C 1 6 ? 25.872 26.936 10.521 1.00 17.05 ? 6 DG C C2 1 ATOM 328 N N2 . DG C 1 6 ? 25.446 26.870 11.786 1.00 18.24 ? 6 DG C N2 1 ATOM 329 N N3 . DG C 1 6 ? 25.242 27.719 9.659 1.00 17.22 ? 6 DG C N3 1 ATOM 330 C C4 . DG C 1 6 ? 25.812 27.671 8.431 1.00 17.17 ? 6 DG C C4 1 ATOM 331 O "O5'" . DC D 1 1 ? 13.947 23.404 20.018 1.00 34.47 ? 7 DC D "O5'" 1 ATOM 332 C "C5'" . DC D 1 1 ? 14.628 22.415 20.767 1.00 34.01 ? 7 DC D "C5'" 1 ATOM 333 C "C4'" . DC D 1 1 ? 15.730 23.063 21.578 1.00 33.85 ? 7 DC D "C4'" 1 ATOM 334 O "O4'" . DC D 1 1 ? 15.303 23.213 22.956 1.00 34.72 ? 7 DC D "O4'" 1 ATOM 335 C "C3'" . DC D 1 1 ? 17.043 22.287 21.582 1.00 33.21 ? 7 DC D "C3'" 1 ATOM 336 O "O3'" . DC D 1 1 ? 18.097 23.103 21.070 1.00 30.99 ? 7 DC D "O3'" 1 ATOM 337 C "C2'" . DC D 1 1 ? 17.287 21.904 23.044 1.00 34.35 ? 7 DC D "C2'" 1 ATOM 338 C "C1'" . DC D 1 1 ? 16.342 22.809 23.833 1.00 35.31 ? 7 DC D "C1'" 1 ATOM 339 N N1 . DC D 1 1 ? 15.733 22.197 25.083 1.00 36.08 ? 7 DC D N1 1 ATOM 340 C C2 . DC D 1 1 ? 16.171 22.616 26.354 1.00 36.28 ? 7 DC D C2 1 ATOM 341 O O2 . DC D 1 1 ? 17.063 23.470 26.443 1.00 36.25 ? 7 DC D O2 1 ATOM 342 N N3 . DC D 1 1 ? 15.603 22.060 27.464 1.00 36.31 ? 7 DC D N3 1 ATOM 343 C C4 . DC D 1 1 ? 14.640 21.138 27.343 1.00 35.82 ? 7 DC D C4 1 ATOM 344 N N4 . DC D 1 1 ? 14.118 20.628 28.460 1.00 35.55 ? 7 DC D N4 1 ATOM 345 C C5 . DC D 1 1 ? 14.175 20.698 26.067 1.00 35.94 ? 7 DC D C5 1 ATOM 346 C C6 . DC D 1 1 ? 14.742 21.249 24.983 1.00 36.20 ? 7 DC D C6 1 ATOM 347 P P . DG D 1 2 ? 18.525 23.076 19.526 1.00 28.13 ? 8 DG D P 1 ATOM 348 O OP1 . DG D 1 2 ? 18.391 21.704 18.996 1.00 28.94 ? 8 DG D OP1 1 ATOM 349 O OP2 . DG D 1 2 ? 19.821 23.781 19.452 1.00 27.50 ? 8 DG D OP2 1 ATOM 350 O "O5'" . DG D 1 2 ? 17.397 23.927 18.798 1.00 25.25 ? 8 DG D "O5'" 1 ATOM 351 C "C5'" . DG D 1 2 ? 17.710 25.217 18.373 1.00 20.68 ? 8 DG D "C5'" 1 ATOM 352 C "C4'" . DG D 1 2 ? 16.943 25.690 17.161 1.00 16.90 ? 8 DG D "C4'" 1 ATOM 353 O "O4'" . DG D 1 2 ? 17.958 26.039 16.209 1.00 13.48 ? 8 DG D "O4'" 1 ATOM 354 C "C3'" . DG D 1 2 ? 16.006 24.718 16.461 1.00 17.19 ? 8 DG D "C3'" 1 ATOM 355 O "O3'" . DG D 1 2 ? 14.701 25.134 16.765 1.00 22.12 ? 8 DG D "O3'" 1 ATOM 356 C "C2'" . DG D 1 2 ? 16.262 24.980 14.985 1.00 13.30 ? 8 DG D "C2'" 1 ATOM 357 C "C1'" . DG D 1 2 ? 17.695 25.443 14.969 1.00 7.86 ? 8 DG D "C1'" 1 ATOM 358 N N9 . DG D 1 2 ? 18.688 24.406 14.725 1.00 2.00 ? 8 DG D N9 1 ATOM 359 C C8 . DG D 1 2 ? 19.494 23.705 15.586 1.00 2.00 ? 8 DG D C8 1 ATOM 360 N N7 . DG D 1 2 ? 20.302 22.868 14.987 1.00 2.00 ? 8 DG D N7 1 ATOM 361 C C5 . DG D 1 2 ? 20.004 23.029 13.644 1.00 2.00 ? 8 DG D C5 1 ATOM 362 C C6 . DG D 1 2 ? 20.524 22.428 12.471 1.00 2.00 ? 8 DG D C6 1 ATOM 363 O O6 . DG D 1 2 ? 21.396 21.568 12.338 1.00 2.00 ? 8 DG D O6 1 ATOM 364 N N1 . DG D 1 2 ? 19.932 22.926 11.318 1.00 2.00 ? 8 DG D N1 1 ATOM 365 C C2 . DG D 1 2 ? 18.936 23.875 11.294 1.00 2.00 ? 8 DG D C2 1 ATOM 366 N N2 . DG D 1 2 ? 18.491 24.265 10.107 1.00 2.00 ? 8 DG D N2 1 ATOM 367 N N3 . DG D 1 2 ? 18.451 24.452 12.358 1.00 2.00 ? 8 DG D N3 1 ATOM 368 C C4 . DG D 1 2 ? 19.025 23.980 13.483 1.00 2.00 ? 8 DG D C4 1 ATOM 369 P P . DT D 1 3 ? 13.366 24.408 16.265 1.00 24.50 ? 9 DT D P 1 ATOM 370 O OP1 . DT D 1 3 ? 12.258 25.267 16.759 1.00 25.70 ? 9 DT D OP1 1 ATOM 371 O OP2 . DT D 1 3 ? 13.453 22.981 16.645 1.00 23.94 ? 9 DT D OP2 1 ATOM 372 O "O5'" . DT D 1 3 ? 13.372 24.517 14.681 1.00 24.09 ? 9 DT D "O5'" 1 ATOM 373 C "C5'" . DT D 1 3 ? 12.838 25.661 14.043 1.00 23.51 ? 9 DT D "C5'" 1 ATOM 374 C "C4'" . DT D 1 3 ? 12.761 25.398 12.555 1.00 22.79 ? 9 DT D "C4'" 1 ATOM 375 O "O4'" . DT D 1 3 ? 14.001 24.795 12.124 1.00 22.55 ? 9 DT D "O4'" 1 ATOM 376 C "C3'" . DT D 1 3 ? 11.670 24.434 12.130 1.00 23.02 ? 9 DT D "C3'" 1 ATOM 377 O "O3'" . DT D 1 3 ? 11.091 24.944 10.934 1.00 24.17 ? 9 DT D "O3'" 1 ATOM 378 C "C2'" . DT D 1 3 ? 12.421 23.119 11.925 1.00 22.22 ? 9 DT D "C2'" 1 ATOM 379 C "C1'" . DT D 1 3 ? 13.773 23.598 11.422 1.00 20.55 ? 9 DT D "C1'" 1 ATOM 380 N N1 . DT D 1 3 ? 14.900 22.660 11.718 1.00 18.39 ? 9 DT D N1 1 ATOM 381 C C2 . DT D 1 3 ? 15.665 22.117 10.703 1.00 17.02 ? 9 DT D C2 1 ATOM 382 O O2 . DT D 1 3 ? 15.499 22.346 9.526 1.00 17.14 ? 9 DT D O2 1 ATOM 383 N N3 . DT D 1 3 ? 16.657 21.272 11.118 1.00 15.89 ? 9 DT D N3 1 ATOM 384 C C4 . DT D 1 3 ? 16.961 20.923 12.419 1.00 15.94 ? 9 DT D C4 1 ATOM 385 O O4 . DT D 1 3 ? 17.879 20.155 12.691 1.00 16.45 ? 9 DT D O4 1 ATOM 386 C C5 . DT D 1 3 ? 16.128 21.526 13.431 1.00 15.94 ? 9 DT D C5 1 ATOM 387 C C7 . DT D 1 3 ? 16.335 21.241 14.887 1.00 15.77 ? 9 DT D C7 1 ATOM 388 C C6 . DT D 1 3 ? 15.159 22.347 13.034 1.00 17.18 ? 9 DT D C6 1 ATOM 389 P P . DA D 1 4 ? 9.957 24.159 10.127 1.00 24.12 ? 10 DA D P 1 ATOM 390 O OP1 . DA D 1 4 ? 9.130 25.171 9.431 1.00 24.06 ? 10 DA D OP1 1 ATOM 391 O OP2 . DA D 1 4 ? 9.348 23.156 11.031 1.00 23.35 ? 10 DA D OP2 1 ATOM 392 O "O5'" . DA D 1 4 ? 10.809 23.370 9.026 1.00 22.71 ? 10 DA D "O5'" 1 ATOM 393 C "C5'" . DA D 1 4 ? 11.367 24.038 7.896 1.00 19.00 ? 10 DA D "C5'" 1 ATOM 394 C "C4'" . DA D 1 4 ? 11.621 23.055 6.767 1.00 15.93 ? 10 DA D "C4'" 1 ATOM 395 O "O4'" . DA D 1 4 ? 12.723 22.189 7.112 1.00 13.24 ? 10 DA D "O4'" 1 ATOM 396 C "C3'" . DA D 1 4 ? 10.452 22.133 6.444 1.00 15.61 ? 10 DA D "C3'" 1 ATOM 397 O "O3'" . DA D 1 4 ? 10.347 21.998 5.044 1.00 17.83 ? 10 DA D "O3'" 1 ATOM 398 C "C2'" . DA D 1 4 ? 10.814 20.817 7.125 1.00 12.65 ? 10 DA D "C2'" 1 ATOM 399 C "C1'" . DA D 1 4 ? 12.333 20.831 7.095 1.00 8.81 ? 10 DA D "C1'" 1 ATOM 400 N N9 . DA D 1 4 ? 12.944 20.222 8.268 1.00 3.21 ? 10 DA D N9 1 ATOM 401 C C8 . DA D 1 4 ? 12.574 20.417 9.566 1.00 2.00 ? 10 DA D C8 1 ATOM 402 N N7 . DA D 1 4 ? 13.334 19.742 10.397 1.00 2.00 ? 10 DA D N7 1 ATOM 403 C C5 . DA D 1 4 ? 14.254 19.058 9.616 1.00 2.00 ? 10 DA D C5 1 ATOM 404 C C6 . DA D 1 4 ? 15.302 18.173 9.928 1.00 2.00 ? 10 DA D C6 1 ATOM 405 N N6 . DA D 1 4 ? 15.652 17.798 11.155 1.00 3.15 ? 10 DA D N6 1 ATOM 406 N N1 . DA D 1 4 ? 16.000 17.684 8.900 1.00 2.00 ? 10 DA D N1 1 ATOM 407 C C2 . DA D 1 4 ? 15.647 18.053 7.666 1.00 2.00 ? 10 DA D C2 1 ATOM 408 N N3 . DA D 1 4 ? 14.700 18.882 7.244 1.00 2.00 ? 10 DA D N3 1 ATOM 409 C C4 . DA D 1 4 ? 14.020 19.362 8.292 1.00 2.00 ? 10 DA D C4 1 ATOM 410 P P . DC D 1 5 ? 9.080 21.333 4.346 1.00 18.58 ? 11 DC D P 1 ATOM 411 O OP1 . DC D 1 5 ? 8.929 21.954 3.021 1.00 19.24 ? 11 DC D OP1 1 ATOM 412 O OP2 . DC D 1 5 ? 7.940 21.321 5.280 1.00 19.37 ? 11 DC D OP2 1 ATOM 413 O "O5'" . DC D 1 5 ? 9.583 19.836 4.181 1.00 18.74 ? 11 DC D "O5'" 1 ATOM 414 C "C5'" . DC D 1 5 ? 10.756 19.525 3.439 1.00 17.99 ? 11 DC D "C5'" 1 ATOM 415 C "C4'" . DC D 1 5 ? 11.148 18.076 3.661 1.00 17.48 ? 11 DC D "C4'" 1 ATOM 416 O "O4'" . DC D 1 5 ? 11.753 17.947 4.971 1.00 16.78 ? 11 DC D "O4'" 1 ATOM 417 C "C3'" . DC D 1 5 ? 9.998 17.063 3.621 1.00 17.23 ? 11 DC D "C3'" 1 ATOM 418 O "O3'" . DC D 1 5 ? 10.344 15.984 2.740 1.00 17.82 ? 11 DC D "O3'" 1 ATOM 419 C "C2'" . DC D 1 5 ? 9.875 16.625 5.082 1.00 16.08 ? 11 DC D "C2'" 1 ATOM 420 C "C1'" . DC D 1 5 ? 11.343 16.704 5.486 1.00 15.45 ? 11 DC D "C1'" 1 ATOM 421 N N1 . DC D 1 5 ? 11.631 16.607 6.947 1.00 13.59 ? 11 DC D N1 1 ATOM 422 C C2 . DC D 1 5 ? 12.725 15.853 7.382 1.00 12.60 ? 11 DC D C2 1 ATOM 423 O O2 . DC D 1 5 ? 13.447 15.277 6.564 1.00 12.92 ? 11 DC D O2 1 ATOM 424 N N3 . DC D 1 5 ? 12.967 15.761 8.707 1.00 12.33 ? 11 DC D N3 1 ATOM 425 C C4 . DC D 1 5 ? 12.174 16.381 9.578 1.00 12.48 ? 11 DC D C4 1 ATOM 426 N N4 . DC D 1 5 ? 12.463 16.260 10.878 1.00 13.25 ? 11 DC D N4 1 ATOM 427 C C5 . DC D 1 5 ? 11.056 17.157 9.160 1.00 12.89 ? 11 DC D C5 1 ATOM 428 C C6 . DC D 1 5 ? 10.822 17.237 7.847 1.00 13.39 ? 11 DC D C6 1 ATOM 429 P P . DG D 1 6 ? 9.261 14.983 2.118 1.00 16.33 ? 12 DG D P 1 ATOM 430 O OP1 . DG D 1 6 ? 9.907 14.290 0.988 1.00 17.22 ? 12 DG D OP1 1 ATOM 431 O OP2 . DG D 1 6 ? 8.004 15.712 1.926 1.00 16.34 ? 12 DG D OP2 1 ATOM 432 O "O5'" . DG D 1 6 ? 9.022 13.924 3.277 1.00 17.58 ? 12 DG D "O5'" 1 ATOM 433 C "C5'" . DG D 1 6 ? 10.056 13.077 3.733 1.00 17.22 ? 12 DG D "C5'" 1 ATOM 434 C "C4'" . DG D 1 6 ? 9.438 11.883 4.418 1.00 18.02 ? 12 DG D "C4'" 1 ATOM 435 O "O4'" . DG D 1 6 ? 8.687 12.350 5.561 1.00 18.88 ? 12 DG D "O4'" 1 ATOM 436 C "C3'" . DG D 1 6 ? 8.455 11.122 3.547 1.00 18.66 ? 12 DG D "C3'" 1 ATOM 437 O "O3'" . DG D 1 6 ? 9.083 9.969 3.010 1.00 18.69 ? 12 DG D "O3'" 1 ATOM 438 C "C2'" . DG D 1 6 ? 7.309 10.793 4.503 1.00 18.91 ? 12 DG D "C2'" 1 ATOM 439 C "C1'" . DG D 1 6 ? 7.323 11.989 5.447 1.00 19.05 ? 12 DG D "C1'" 1 ATOM 440 N N9 . DG D 1 6 ? 6.602 13.178 4.997 1.00 19.94 ? 12 DG D N9 1 ATOM 441 C C8 . DG D 1 6 ? 5.867 13.333 3.846 1.00 20.34 ? 12 DG D C8 1 ATOM 442 N N7 . DG D 1 6 ? 5.349 14.516 3.704 1.00 20.88 ? 12 DG D N7 1 ATOM 443 C C5 . DG D 1 6 ? 5.767 15.199 4.829 1.00 21.48 ? 12 DG D C5 1 ATOM 444 C C6 . DG D 1 6 ? 5.516 16.533 5.225 1.00 22.16 ? 12 DG D C6 1 ATOM 445 O O6 . DG D 1 6 ? 4.847 17.387 4.634 1.00 23.17 ? 12 DG D O6 1 ATOM 446 N N1 . DG D 1 6 ? 6.127 16.846 6.437 1.00 22.31 ? 12 DG D N1 1 ATOM 447 C C2 . DG D 1 6 ? 6.887 15.972 7.176 1.00 22.11 ? 12 DG D C2 1 ATOM 448 N N2 . DG D 1 6 ? 7.389 16.449 8.325 1.00 23.17 ? 12 DG D N2 1 ATOM 449 N N3 . DG D 1 6 ? 7.132 14.716 6.818 1.00 21.96 ? 12 DG D N3 1 ATOM 450 C C4 . DG D 1 6 ? 6.542 14.393 5.636 1.00 21.23 ? 12 DG D C4 1 HETATM 451 CA CA . CA E 2 . ? 11.402 14.626 -0.941 1.00 36.44 ? 1 CA B CA 1 HETATM 452 C C1 . BER F 3 . ? 22.371 25.635 11.021 1.00 18.98 ? 7 BER C C1 1 HETATM 453 C C2 . BER F 3 . ? 21.552 26.387 12.005 1.00 18.81 ? 7 BER C C2 1 HETATM 454 N N1 . BER F 3 . ? 22.251 25.914 9.631 1.00 19.01 ? 7 BER C N1 1 HETATM 455 C C3 . BER F 3 . ? 23.315 24.721 11.496 1.00 19.07 ? 7 BER C C3 1 HETATM 456 C C4 . BER F 3 . ? 20.514 27.351 11.530 1.00 18.59 ? 7 BER C C4 1 HETATM 457 C C5 . BER F 3 . ? 21.894 26.280 13.356 1.00 18.38 ? 7 BER C C5 1 HETATM 458 C C6 . BER F 3 . ? 23.039 25.271 8.734 1.00 19.33 ? 7 BER C C6 1 HETATM 459 C C7 . BER F 3 . ? 21.276 26.894 9.108 1.00 18.93 ? 7 BER C C7 1 HETATM 460 C C8 . BER F 3 . ? 24.132 24.046 10.598 1.00 19.57 ? 7 BER C C8 1 HETATM 461 C C9 . BER F 3 . ? 19.761 28.086 12.451 1.00 17.85 ? 7 BER C C9 1 HETATM 462 C C10 . BER F 3 . ? 20.194 27.440 10.052 1.00 18.67 ? 7 BER C C10 1 HETATM 463 C C11 . BER F 3 . ? 21.151 27.035 14.239 1.00 18.42 ? 7 BER C C11 1 HETATM 464 C C12 . BER F 3 . ? 23.992 24.328 9.144 1.00 19.61 ? 7 BER C C12 1 HETATM 465 C C13 . BER F 3 . ? 25.071 23.124 11.049 1.00 19.61 ? 7 BER C C13 1 HETATM 466 C C14 . BER F 3 . ? 20.096 27.934 13.789 1.00 18.21 ? 7 BER C C14 1 HETATM 467 O O1 . BER F 3 . ? 21.239 27.111 15.592 1.00 19.34 ? 7 BER C O1 1 HETATM 468 C C15 . BER F 3 . ? 24.890 23.595 8.197 1.00 20.63 ? 7 BER C C15 1 HETATM 469 C C16 . BER F 3 . ? 25.900 22.433 10.164 1.00 20.18 ? 7 BER C C16 1 HETATM 470 O O2 . BER F 3 . ? 19.572 28.528 14.896 1.00 19.35 ? 7 BER C O2 1 HETATM 471 C C17 . BER F 3 . ? 20.287 28.082 16.068 1.00 19.16 ? 7 BER C C17 1 HETATM 472 C C18 . BER F 3 . ? 25.861 22.604 8.778 1.00 20.95 ? 7 BER C C18 1 HETATM 473 O O3 . BER F 3 . ? 24.755 23.824 6.849 1.00 22.47 ? 7 BER C O3 1 HETATM 474 O O4 . BER F 3 . ? 26.767 21.838 8.062 1.00 22.88 ? 7 BER C O4 1 HETATM 475 C C19 . BER F 3 . ? 25.824 24.241 5.997 1.00 22.09 ? 7 BER C C19 1 HETATM 476 C C20 . BER F 3 . ? 26.545 21.227 6.784 1.00 24.23 ? 7 BER C C20 1 HETATM 477 O O . HOH G 4 . ? 9.549 8.187 4.995 1.00 15.59 ? 1 HOH D O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 DC 1 7 7 DC DC B . n B 1 2 DG 2 8 8 DG DG B . n B 1 3 DT 3 9 9 DT DT B . n B 1 4 DA 4 10 10 DA DA B . n B 1 5 DC 5 11 11 DC DC B . n B 1 6 DG 6 12 12 DG DG B . n C 1 1 DC 1 1 1 DC DC C . n C 1 2 DG 2 2 2 DG DG C . n C 1 3 DT 3 3 3 DT DT C . n C 1 4 DA 4 4 4 DA DA C . n C 1 5 DC 5 5 5 DC DC C . n C 1 6 DG 6 6 6 DG DG C . n D 1 1 DC 1 7 7 DC DC D . n D 1 2 DG 2 8 8 DG DG D . n D 1 3 DT 3 9 9 DT DT D . n D 1 4 DA 4 10 10 DA DA D . n D 1 5 DC 5 11 11 DC DC D . n D 1 6 DG 6 12 12 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA 1 1 1 CA CA B . F 3 BER 1 7 1 BER BER C . G 4 HOH 1 1 1 HOH HOH D . # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E 2 1 C,D,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 360 ? 1 MORE -2 ? 1 'SSA (A^2)' 2700 ? 2 'ABSA (A^2)' 360 ? 2 MORE -2 ? 2 'SSA (A^2)' 2700 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OP1 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id B _pdbx_struct_conn_angle.ptnr1_label_comp_id DG _pdbx_struct_conn_angle.ptnr1_label_seq_id 6 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id B _pdbx_struct_conn_angle.ptnr1_auth_comp_id DG _pdbx_struct_conn_angle.ptnr1_auth_seq_id 12 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id CA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id E _pdbx_struct_conn_angle.ptnr2_label_comp_id CA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id B _pdbx_struct_conn_angle.ptnr2_auth_comp_id CA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 1 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OP1 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id D _pdbx_struct_conn_angle.ptnr3_label_comp_id DG _pdbx_struct_conn_angle.ptnr3_label_seq_id 6 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id D _pdbx_struct_conn_angle.ptnr3_auth_comp_id DG _pdbx_struct_conn_angle.ptnr3_auth_seq_id 12 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 79.6 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-05-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 4 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_phasing_MR.entry_id 3NP6 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.500 _pdbx_phasing_MR.d_res_low_rotation 39.420 _pdbx_phasing_MR.d_res_high_translation 3.500 _pdbx_phasing_MR.d_res_low_translation 39.420 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CrysalisPro . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.91 108.30 2.61 0.30 N 2 1 C6 B DA 10 ? ? N1 B DA 10 ? ? C2 B DA 10 ? ? 114.17 118.60 -4.43 0.60 N 3 1 C8 B DA 10 ? ? N9 B DA 10 ? ? C4 B DA 10 ? ? 103.33 105.80 -2.47 0.40 N 4 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 122.87 118.90 3.97 0.60 N 5 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 112.49 108.30 4.19 0.30 N 6 1 "O4'" D DC 11 ? ? "C1'" D DC 11 ? ? N1 D DC 11 ? ? 111.08 108.30 2.78 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DC 1 ? "O5'" ? A DC 1 "O5'" 2 1 Y 1 A DC 1 ? "C5'" ? A DC 1 "C5'" 3 1 Y 1 A DC 1 ? "C4'" ? A DC 1 "C4'" 4 1 Y 1 A DC 1 ? "O4'" ? A DC 1 "O4'" 5 1 Y 1 A DC 1 ? "C3'" ? A DC 1 "C3'" 6 1 Y 1 A DC 1 ? "C2'" ? A DC 1 "C2'" 7 1 Y 1 A DC 1 ? "C1'" ? A DC 1 "C1'" 8 1 Y 1 A DC 1 ? N1 ? A DC 1 N1 9 1 Y 1 A DC 1 ? C2 ? A DC 1 C2 10 1 Y 1 A DC 1 ? O2 ? A DC 1 O2 11 1 Y 1 A DC 1 ? N3 ? A DC 1 N3 12 1 Y 1 A DC 1 ? C4 ? A DC 1 C4 13 1 Y 1 A DC 1 ? N4 ? A DC 1 N4 14 1 Y 1 A DC 1 ? C5 ? A DC 1 C5 15 1 Y 1 A DC 1 ? C6 ? A DC 1 C6 16 1 Y 1 C DC 1 ? "O5'" ? C DC 1 "O5'" 17 1 Y 1 C DC 1 ? "C5'" ? C DC 1 "C5'" 18 1 Y 1 C DC 1 ? "C4'" ? C DC 1 "C4'" 19 1 Y 1 C DC 1 ? "O4'" ? C DC 1 "O4'" 20 1 Y 1 C DC 1 ? "C3'" ? C DC 1 "C3'" 21 1 Y 1 C DC 1 ? "C2'" ? C DC 1 "C2'" 22 1 Y 1 C DC 1 ? "C1'" ? C DC 1 "C1'" 23 1 Y 1 C DC 1 ? N1 ? C DC 1 N1 24 1 Y 1 C DC 1 ? C2 ? C DC 1 C2 25 1 Y 1 C DC 1 ? O2 ? C DC 1 O2 26 1 Y 1 C DC 1 ? N3 ? C DC 1 N3 27 1 Y 1 C DC 1 ? C4 ? C DC 1 C4 28 1 Y 1 C DC 1 ? N4 ? C DC 1 N4 29 1 Y 1 C DC 1 ? C5 ? C DC 1 C5 30 1 Y 1 C DC 1 ? C6 ? C DC 1 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BER C1 C Y N 1 BER C2 C Y N 2 BER N1 N Y N 3 BER C3 C Y N 4 BER C4 C Y N 5 BER C5 C Y N 6 BER C6 C Y N 7 BER C7 C N N 8 BER C8 C Y N 9 BER C9 C Y N 10 BER C10 C N N 11 BER C11 C Y N 12 BER C12 C Y N 13 BER C13 C Y N 14 BER C14 C Y N 15 BER O1 O N N 16 BER C15 C Y N 17 BER C16 C Y N 18 BER O2 O N N 19 BER C17 C N N 20 BER C18 C Y N 21 BER O3 O N N 22 BER O4 O N N 23 BER C19 C N N 24 BER C20 C N N 25 BER H31 H N N 26 BER H51 H N N 27 BER H61 H N N 28 BER H71 H N N 29 BER H72 H N N 30 BER H91 H N N 31 BER H101 H N N 32 BER H102 H N N 33 BER H131 H N N 34 BER H161 H N N 35 BER H171 H N N 36 BER H172 H N N 37 BER H191 H N N 38 BER H192 H N N 39 BER H193 H N N 40 BER H201 H N N 41 BER H202 H N N 42 BER H203 H N N 43 CA CA CA N N 44 DA OP3 O N N 45 DA P P N N 46 DA OP1 O N N 47 DA OP2 O N N 48 DA "O5'" O N N 49 DA "C5'" C N N 50 DA "C4'" C N R 51 DA "O4'" O N N 52 DA "C3'" C N S 53 DA "O3'" O N N 54 DA "C2'" C N N 55 DA "C1'" C N R 56 DA N9 N Y N 57 DA C8 C Y N 58 DA N7 N Y N 59 DA C5 C Y N 60 DA C6 C Y N 61 DA N6 N N N 62 DA N1 N Y N 63 DA C2 C Y N 64 DA N3 N Y N 65 DA C4 C Y N 66 DA HOP3 H N N 67 DA HOP2 H N N 68 DA "H5'" H N N 69 DA "H5''" H N N 70 DA "H4'" H N N 71 DA "H3'" H N N 72 DA "HO3'" H N N 73 DA "H2'" H N N 74 DA "H2''" H N N 75 DA "H1'" H N N 76 DA H8 H N N 77 DA H61 H N N 78 DA H62 H N N 79 DA H2 H N N 80 DC OP3 O N N 81 DC P P N N 82 DC OP1 O N N 83 DC OP2 O N N 84 DC "O5'" O N N 85 DC "C5'" C N N 86 DC "C4'" C N R 87 DC "O4'" O N N 88 DC "C3'" C N S 89 DC "O3'" O N N 90 DC "C2'" C N N 91 DC "C1'" C N R 92 DC N1 N N N 93 DC C2 C N N 94 DC O2 O N N 95 DC N3 N N N 96 DC C4 C N N 97 DC N4 N N N 98 DC C5 C N N 99 DC C6 C N N 100 DC HOP3 H N N 101 DC HOP2 H N N 102 DC "H5'" H N N 103 DC "H5''" H N N 104 DC "H4'" H N N 105 DC "H3'" H N N 106 DC "HO3'" H N N 107 DC "H2'" H N N 108 DC "H2''" H N N 109 DC "H1'" H N N 110 DC H41 H N N 111 DC H42 H N N 112 DC H5 H N N 113 DC H6 H N N 114 DG OP3 O N N 115 DG P P N N 116 DG OP1 O N N 117 DG OP2 O N N 118 DG "O5'" O N N 119 DG "C5'" C N N 120 DG "C4'" C N R 121 DG "O4'" O N N 122 DG "C3'" C N S 123 DG "O3'" O N N 124 DG "C2'" C N N 125 DG "C1'" C N R 126 DG N9 N Y N 127 DG C8 C Y N 128 DG N7 N Y N 129 DG C5 C Y N 130 DG C6 C N N 131 DG O6 O N N 132 DG N1 N N N 133 DG C2 C N N 134 DG N2 N N N 135 DG N3 N N N 136 DG C4 C Y N 137 DG HOP3 H N N 138 DG HOP2 H N N 139 DG "H5'" H N N 140 DG "H5''" H N N 141 DG "H4'" H N N 142 DG "H3'" H N N 143 DG "HO3'" H N N 144 DG "H2'" H N N 145 DG "H2''" H N N 146 DG "H1'" H N N 147 DG H8 H N N 148 DG H1 H N N 149 DG H21 H N N 150 DG H22 H N N 151 DT OP3 O N N 152 DT P P N N 153 DT OP1 O N N 154 DT OP2 O N N 155 DT "O5'" O N N 156 DT "C5'" C N N 157 DT "C4'" C N R 158 DT "O4'" O N N 159 DT "C3'" C N S 160 DT "O3'" O N N 161 DT "C2'" C N N 162 DT "C1'" C N R 163 DT N1 N N N 164 DT C2 C N N 165 DT O2 O N N 166 DT N3 N N N 167 DT C4 C N N 168 DT O4 O N N 169 DT C5 C N N 170 DT C7 C N N 171 DT C6 C N N 172 DT HOP3 H N N 173 DT HOP2 H N N 174 DT "H5'" H N N 175 DT "H5''" H N N 176 DT "H4'" H N N 177 DT "H3'" H N N 178 DT "HO3'" H N N 179 DT "H2'" H N N 180 DT "H2''" H N N 181 DT "H1'" H N N 182 DT H3 H N N 183 DT H71 H N N 184 DT H72 H N N 185 DT H73 H N N 186 DT H6 H N N 187 HOH O O N N 188 HOH H1 H N N 189 HOH H2 H N N 190 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BER C1 C2 sing Y N 1 BER C1 N1 doub Y N 2 BER C1 C3 sing Y N 3 BER C2 C4 doub Y N 4 BER C2 C5 sing Y N 5 BER N1 C6 sing Y N 6 BER N1 C7 sing N N 7 BER C3 C8 doub Y N 8 BER C3 H31 sing N N 9 BER C4 C9 sing Y N 10 BER C4 C10 sing N N 11 BER C5 C11 doub Y N 12 BER C5 H51 sing N N 13 BER C6 C12 doub Y N 14 BER C6 H61 sing N N 15 BER C7 C10 sing N N 16 BER C7 H71 sing N N 17 BER C7 H72 sing N N 18 BER C8 C12 sing Y N 19 BER C8 C13 sing Y N 20 BER C9 C14 doub Y N 21 BER C9 H91 sing N N 22 BER C10 H101 sing N N 23 BER C10 H102 sing N N 24 BER C11 C14 sing Y N 25 BER C11 O1 sing N N 26 BER C12 C15 sing Y N 27 BER C13 C16 doub Y N 28 BER C13 H131 sing N N 29 BER C14 O2 sing N N 30 BER O1 C17 sing N N 31 BER C15 C18 doub Y N 32 BER C15 O3 sing N N 33 BER C16 C18 sing Y N 34 BER C16 H161 sing N N 35 BER O2 C17 sing N N 36 BER C17 H171 sing N N 37 BER C17 H172 sing N N 38 BER C18 O4 sing N N 39 BER O3 C19 sing N N 40 BER O4 C20 sing N N 41 BER C19 H191 sing N N 42 BER C19 H192 sing N N 43 BER C19 H193 sing N N 44 BER C20 H201 sing N N 45 BER C20 H202 sing N N 46 BER C20 H203 sing N N 47 DA OP3 P sing N N 48 DA OP3 HOP3 sing N N 49 DA P OP1 doub N N 50 DA P OP2 sing N N 51 DA P "O5'" sing N N 52 DA OP2 HOP2 sing N N 53 DA "O5'" "C5'" sing N N 54 DA "C5'" "C4'" sing N N 55 DA "C5'" "H5'" sing N N 56 DA "C5'" "H5''" sing N N 57 DA "C4'" "O4'" sing N N 58 DA "C4'" "C3'" sing N N 59 DA "C4'" "H4'" sing N N 60 DA "O4'" "C1'" sing N N 61 DA "C3'" "O3'" sing N N 62 DA "C3'" "C2'" sing N N 63 DA "C3'" "H3'" sing N N 64 DA "O3'" "HO3'" sing N N 65 DA "C2'" "C1'" sing N N 66 DA "C2'" "H2'" sing N N 67 DA "C2'" "H2''" sing N N 68 DA "C1'" N9 sing N N 69 DA "C1'" "H1'" sing N N 70 DA N9 C8 sing Y N 71 DA N9 C4 sing Y N 72 DA C8 N7 doub Y N 73 DA C8 H8 sing N N 74 DA N7 C5 sing Y N 75 DA C5 C6 sing Y N 76 DA C5 C4 doub Y N 77 DA C6 N6 sing N N 78 DA C6 N1 doub Y N 79 DA N6 H61 sing N N 80 DA N6 H62 sing N N 81 DA N1 C2 sing Y N 82 DA C2 N3 doub Y N 83 DA C2 H2 sing N N 84 DA N3 C4 sing Y N 85 DC OP3 P sing N N 86 DC OP3 HOP3 sing N N 87 DC P OP1 doub N N 88 DC P OP2 sing N N 89 DC P "O5'" sing N N 90 DC OP2 HOP2 sing N N 91 DC "O5'" "C5'" sing N N 92 DC "C5'" "C4'" sing N N 93 DC "C5'" "H5'" sing N N 94 DC "C5'" "H5''" sing N N 95 DC "C4'" "O4'" sing N N 96 DC "C4'" "C3'" sing N N 97 DC "C4'" "H4'" sing N N 98 DC "O4'" "C1'" sing N N 99 DC "C3'" "O3'" sing N N 100 DC "C3'" "C2'" sing N N 101 DC "C3'" "H3'" sing N N 102 DC "O3'" "HO3'" sing N N 103 DC "C2'" "C1'" sing N N 104 DC "C2'" "H2'" sing N N 105 DC "C2'" "H2''" sing N N 106 DC "C1'" N1 sing N N 107 DC "C1'" "H1'" sing N N 108 DC N1 C2 sing N N 109 DC N1 C6 sing N N 110 DC C2 O2 doub N N 111 DC C2 N3 sing N N 112 DC N3 C4 doub N N 113 DC C4 N4 sing N N 114 DC C4 C5 sing N N 115 DC N4 H41 sing N N 116 DC N4 H42 sing N N 117 DC C5 C6 doub N N 118 DC C5 H5 sing N N 119 DC C6 H6 sing N N 120 DG OP3 P sing N N 121 DG OP3 HOP3 sing N N 122 DG P OP1 doub N N 123 DG P OP2 sing N N 124 DG P "O5'" sing N N 125 DG OP2 HOP2 sing N N 126 DG "O5'" "C5'" sing N N 127 DG "C5'" "C4'" sing N N 128 DG "C5'" "H5'" sing N N 129 DG "C5'" "H5''" sing N N 130 DG "C4'" "O4'" sing N N 131 DG "C4'" "C3'" sing N N 132 DG "C4'" "H4'" sing N N 133 DG "O4'" "C1'" sing N N 134 DG "C3'" "O3'" sing N N 135 DG "C3'" "C2'" sing N N 136 DG "C3'" "H3'" sing N N 137 DG "O3'" "HO3'" sing N N 138 DG "C2'" "C1'" sing N N 139 DG "C2'" "H2'" sing N N 140 DG "C2'" "H2''" sing N N 141 DG "C1'" N9 sing N N 142 DG "C1'" "H1'" sing N N 143 DG N9 C8 sing Y N 144 DG N9 C4 sing Y N 145 DG C8 N7 doub Y N 146 DG C8 H8 sing N N 147 DG N7 C5 sing Y N 148 DG C5 C6 sing N N 149 DG C5 C4 doub Y N 150 DG C6 O6 doub N N 151 DG C6 N1 sing N N 152 DG N1 C2 sing N N 153 DG N1 H1 sing N N 154 DG C2 N2 sing N N 155 DG C2 N3 doub N N 156 DG N2 H21 sing N N 157 DG N2 H22 sing N N 158 DG N3 C4 sing N N 159 DT OP3 P sing N N 160 DT OP3 HOP3 sing N N 161 DT P OP1 doub N N 162 DT P OP2 sing N N 163 DT P "O5'" sing N N 164 DT OP2 HOP2 sing N N 165 DT "O5'" "C5'" sing N N 166 DT "C5'" "C4'" sing N N 167 DT "C5'" "H5'" sing N N 168 DT "C5'" "H5''" sing N N 169 DT "C4'" "O4'" sing N N 170 DT "C4'" "C3'" sing N N 171 DT "C4'" "H4'" sing N N 172 DT "O4'" "C1'" sing N N 173 DT "C3'" "O3'" sing N N 174 DT "C3'" "C2'" sing N N 175 DT "C3'" "H3'" sing N N 176 DT "O3'" "HO3'" sing N N 177 DT "C2'" "C1'" sing N N 178 DT "C2'" "H2'" sing N N 179 DT "C2'" "H2''" sing N N 180 DT "C1'" N1 sing N N 181 DT "C1'" "H1'" sing N N 182 DT N1 C2 sing N N 183 DT N1 C6 sing N N 184 DT C2 O2 doub N N 185 DT C2 N3 sing N N 186 DT N3 C4 sing N N 187 DT N3 H3 sing N N 188 DT C4 O4 doub N N 189 DT C4 C5 sing N N 190 DT C5 C7 sing N N 191 DT C5 C6 doub N N 192 DT C7 H71 sing N N 193 DT C7 H72 sing N N 194 DT C7 H73 sing N N 195 DT C6 H6 sing N N 196 HOH O H1 sing N N 197 HOH O H2 sing N N 198 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3NP6 'double helix' 3NP6 'b-form double helix' 3NP6 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 2 1_555 A DC 5 1_555 -0.241 -0.176 0.041 -12.422 -2.953 1.525 1 B_DG8:DC5_A B 8 ? A 5 ? 19 1 1 B DT 3 1_555 A DA 4 1_555 -0.280 0.105 -0.071 2.974 -5.637 -2.967 2 B_DT9:DA4_A B 9 ? A 4 ? 20 1 1 B DA 4 1_555 A DT 3 1_555 0.194 -0.119 0.147 2.760 -6.299 -2.803 3 B_DA10:DT3_A B 10 ? A 3 ? 20 1 1 B DC 5 1_555 A DG 2 1_555 0.478 -0.087 0.142 5.535 -0.591 3.858 4 B_DC11:DG2_A B 11 ? A 2 ? 19 1 1 C DG 2 1_555 D DC 5 1_555 -0.243 -0.301 0.040 -5.985 0.988 2.581 5 C_DG2:DC11_D C 2 ? D 11 ? 19 1 1 C DT 3 1_555 D DA 4 1_555 -0.474 -0.329 0.306 -0.963 -5.912 -0.672 6 C_DT3:DA10_D C 3 ? D 10 ? 20 1 1 C DA 4 1_555 D DT 3 1_555 -0.109 0.012 0.092 0.480 -1.774 -0.391 7 C_DA4:DT9_D C 4 ? D 9 ? 20 1 1 C DC 5 1_555 D DG 2 1_555 0.457 0.175 -0.123 16.259 3.015 2.526 8 C_DC5:DG8_D C 5 ? D 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 2 1_555 A DC 5 1_555 B DT 3 1_555 A DA 4 1_555 -1.025 -0.562 3.061 2.669 1.546 30.479 -1.343 2.424 2.931 2.932 -5.060 30.631 1 BB_DG8DT9:DA4DC5_AA B 8 ? A 5 ? B 9 ? A 4 ? 1 B DT 3 1_555 A DA 4 1_555 B DA 4 1_555 A DT 3 1_555 -0.133 -0.171 3.242 -2.256 2.449 39.916 -0.527 -0.062 3.229 3.581 3.297 40.049 2 BB_DT9DA10:DT3DA4_AA B 9 ? A 4 ? B 10 ? A 3 ? 1 B DA 4 1_555 A DT 3 1_555 B DC 5 1_555 A DG 2 1_555 0.462 -0.197 3.397 -0.239 2.622 28.359 -1.021 -0.996 3.362 5.336 0.487 28.479 3 BB_DA10DC11:DG2DT3_AA B 10 ? A 3 ? B 11 ? A 2 ? 1 B DC 5 1_555 A DG 2 1_555 C DG 2 1_555 D DC 5 1_555 -0.016 0.948 3.516 0.774 4.400 -70.766 -0.980 0.015 3.459 -3.796 0.668 -70.888 4 BC_DC11DG2:DC11DG2_DA B 11 ? A 2 ? C 2 ? D 11 ? 1 C DG 2 1_555 D DC 5 1_555 C DT 3 1_555 D DA 4 1_555 -0.485 -0.440 3.319 -2.016 1.313 24.370 -1.451 0.507 3.320 3.101 4.761 24.487 5 CC_DG2DT3:DA10DC11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 C DT 3 1_555 D DA 4 1_555 C DA 4 1_555 D DT 3 1_555 0.270 -0.226 3.218 1.970 1.836 40.484 -0.527 -0.173 3.214 2.650 -2.843 40.570 6 CC_DT3DA4:DT9DA10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 C DA 4 1_555 D DT 3 1_555 C DC 5 1_555 D DG 2 1_555 1.011 -0.509 3.128 -1.075 4.716 30.255 -1.839 -2.114 2.979 8.963 2.044 30.631 7 CC_DA4DC5:DG8DT9_DD C 4 ? D 9 ? C 5 ? D 8 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 BERBERINE BER 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1XCS _pdbx_initial_refinement_model.details 'PDB ENTRY 1XCS' # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.fraction _pdbx_reflns_twin.operator _pdbx_reflns_twin.type _pdbx_reflns_twin.mean_F_square_over_mean_F2 _pdbx_reflns_twin.mean_I2_over_mean_I_square 1 1 1 0.914 'H, K, L' ? ? ? 2 1 1 0.086 -h,-k,l ? ? ? #