0.008060 0.004653 0.000000 0.000000 0.009307 0.000000 0.000000 0.000000 0.014950 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 124.073 124.073 66.888 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a STRUCTURAL GENOMICS, UNKNOWN FUNCTION (BACOVA_03322) from Bacteroides ovatus at 2.61 A resolution 10.2210/pdb3nqk/pdb pdb_00003nqk 100 1 Flat mirror (vertical focusing) CCD 2010-04-07 MARMOSAIC 325 mm CCD Single crystal Si(111) bent monochromator (horizontal focusing) MAD M x-ray 1 0.91837 1.0 0.97937 1.0 0.97908 1.0 BL11-1 SSRL 0.91837,0.97937,0.97908 SYNCHROTRON SSRL BEAMLINE BL11-1 37451.086 uncharacterized protein 1 man polymer 62.068 1,2-ETHANEDIOL 2 syn non-polymer 18.015 water 79 nat water no yes GNEWEDEQYEQYVSFKAPIASGSDGVTTIYVRYKDNGKVTYQLPIIVSGSTVNSQDRDIHIAVDKDTLKTLNIERFSLYR PELWYTE(MSE)EEDKYEFPETVHIPAGSCVELLNIDFNLQDID(MSE)LEKWVLPLTIVDDGSYAYQSHPRKNYAKALL KVVPFNNYSGSYTASS(MSE)KVYTYINGKPDTNARTTDKRTGYVVDNNSIFFYAGLINED(MSE)DKD(MSE)RKKYKI NVHFKEDGTLD(MSE)KQDDPSNE(MSE)EFELIGTPTYSSTSV(MSE)DATRPYLERRYVQI(MSE)FEYDFQDFTYGG SGTEVIPIKYRVAGS(MSE)TLLRNINTQIPDEDQQIEW GNEWEDEQYEQYVSFKAPIASGSDGVTTIYVRYKDNGKVTYQLPIIVSGSTVNSQDRDIHIAVDKDTLKTLNIERFSLYR PELWYTEMEEDKYEFPETVHIPAGSCVELLNIDFNLQDIDMLEKWVLPLTIVDDGSYAYQSHPRKNYAKALLKVVPFNNY SGSYTASSMKVYTYINGKPDTNARTTDKRTGYVVDNNSIFFYAGLINEDMDKDMRKKYKINVHFKEDGTLDMKQDDPSNE MEFELIGTPTYSSTSVMDATRPYLERRYVQIMFEYDFQDFTYGGSGTEVIPIKYRVAGSMTLLRNINTQIPDEDQQIEW A 416718 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 8483 sample BACOVA_03322 411476 Bacteroides ovatus 562 Escherichia Coli HK100 Plasmid SpeedET 1 3.97 69.00 VAPOR DIFFUSION, SITTING DROP 6.6 0.200000000M (NH4)2Tartrate, 20.000000000% PEG-3350, No Buffer pH 6.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative software software struct_conn database_2 struct_ref_seq_dif struct_site repository Initial release Version format compliance Refinement description Data collection Derived calculations Refinement description Database references Derived calculations 1 0 2010-08-04 1 1 2011-07-13 1 2 2017-11-08 1 3 2019-07-17 1 4 2023-02-01 _software.classification _software.name _software.classification _software.contact_author _software.contact_author_email _software.language _software.location _software.name _software.type _software.version _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2010-06-29 REL REL EDO 1,2-ETHANEDIOL HOH water THE CONSTRUCT (22-339) WAS EXPRESSED WITH A N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 22 TO 339 OF THE TARGET SEQUENCE. EDO 401 2 EDO EDO 401 A EDO 402 2 EDO EDO 402 A HOH 403 3 HOH HOH 403 A HOH 404 3 HOH HOH 404 A HOH 405 3 HOH HOH 405 A HOH 406 3 HOH HOH 406 A HOH 407 3 HOH HOH 407 A HOH 408 3 HOH HOH 408 A HOH 409 3 HOH HOH 409 A HOH 410 3 HOH HOH 410 A HOH 411 3 HOH HOH 411 A HOH 412 3 HOH HOH 412 A HOH 413 3 HOH HOH 413 A HOH 414 3 HOH HOH 414 A HOH 415 3 HOH HOH 415 A HOH 416 3 HOH HOH 416 A HOH 417 3 HOH HOH 417 A HOH 418 3 HOH HOH 418 A HOH 419 3 HOH HOH 419 A HOH 420 3 HOH HOH 420 A HOH 421 3 HOH HOH 421 A HOH 422 3 HOH HOH 422 A HOH 423 3 HOH HOH 423 A HOH 424 3 HOH HOH 424 A HOH 425 3 HOH HOH 425 A HOH 426 3 HOH HOH 426 A HOH 427 3 HOH HOH 427 A HOH 428 3 HOH HOH 428 A HOH 429 3 HOH HOH 429 A HOH 430 3 HOH HOH 430 A HOH 431 3 HOH HOH 431 A HOH 432 3 HOH HOH 432 A HOH 433 3 HOH HOH 433 A HOH 434 3 HOH HOH 434 A HOH 435 3 HOH HOH 435 A HOH 436 3 HOH HOH 436 A HOH 437 3 HOH HOH 437 A HOH 438 3 HOH HOH 438 A HOH 439 3 HOH HOH 439 A HOH 440 3 HOH HOH 440 A HOH 441 3 HOH HOH 441 A HOH 442 3 HOH HOH 442 A HOH 443 3 HOH HOH 443 A HOH 444 3 HOH HOH 444 A HOH 445 3 HOH HOH 445 A HOH 446 3 HOH HOH 446 A HOH 447 3 HOH HOH 447 A HOH 448 3 HOH HOH 448 A HOH 449 3 HOH HOH 449 A HOH 450 3 HOH HOH 450 A HOH 451 3 HOH HOH 451 A HOH 452 3 HOH HOH 452 A HOH 453 3 HOH HOH 453 A HOH 454 3 HOH HOH 454 A HOH 455 3 HOH HOH 455 A HOH 456 3 HOH HOH 456 A HOH 457 3 HOH HOH 457 A HOH 458 3 HOH HOH 458 A HOH 459 3 HOH HOH 459 A HOH 460 3 HOH HOH 460 A HOH 461 3 HOH HOH 461 A HOH 462 3 HOH HOH 462 A HOH 463 3 HOH HOH 463 A HOH 464 3 HOH HOH 464 A HOH 465 3 HOH HOH 465 A HOH 466 3 HOH HOH 466 A HOH 467 3 HOH HOH 467 A HOH 468 3 HOH HOH 468 A HOH 469 3 HOH HOH 469 A HOH 470 3 HOH HOH 470 A HOH 471 3 HOH HOH 471 A HOH 472 3 HOH HOH 472 A HOH 473 3 HOH HOH 473 A HOH 474 3 HOH HOH 474 A HOH 475 3 HOH HOH 475 A HOH 476 3 HOH HOH 476 A HOH 477 3 HOH HOH 477 A HOH 478 3 HOH HOH 478 A HOH 479 3 HOH HOH 479 A HOH 480 3 HOH HOH 480 A HOH 481 3 HOH HOH 481 A n 1 21 A n 2 22 A n 3 23 A n 4 24 A n 5 25 A n 6 26 A n 7 27 A n 8 28 A n 9 29 A n 10 30 A GLN 31 n 11 GLN 31 A TYR 32 n 12 TYR 32 A VAL 33 n 13 VAL 33 A SER 34 n 14 SER 34 A PHE 35 n 15 PHE 35 A LYS 36 n 16 LYS 36 A ALA 37 n 17 ALA 37 A PRO 38 n 18 PRO 38 A ILE 39 n 19 ILE 39 A ALA 40 n 20 ALA 40 A SER 41 n 21 SER 41 A GLY 42 n 22 GLY 42 A SER 43 n 23 SER 43 A ASP 44 n 24 ASP 44 A GLY 45 n 25 GLY 45 A VAL 46 n 26 VAL 46 A THR 47 n 27 THR 47 A THR 48 n 28 THR 48 A ILE 49 n 29 ILE 49 A TYR 50 n 30 TYR 50 A VAL 51 n 31 VAL 51 A ARG 52 n 32 ARG 52 A TYR 53 n 33 TYR 53 A LYS 54 n 34 LYS 54 A ASP 55 n 35 ASP 55 A ASN 56 n 36 ASN 56 A GLY 57 n 37 GLY 57 A LYS 58 n 38 LYS 58 A VAL 59 n 39 VAL 59 A THR 60 n 40 THR 60 A TYR 61 n 41 TYR 61 A GLN 62 n 42 GLN 62 A LEU 63 n 43 LEU 63 A PRO 64 n 44 PRO 64 A ILE 65 n 45 ILE 65 A ILE 66 n 46 ILE 66 A VAL 67 n 47 VAL 67 A SER 68 n 48 SER 68 A GLY 69 n 49 GLY 69 A SER 70 n 50 SER 70 A THR 71 n 51 THR 71 A VAL 72 n 52 VAL 72 A ASN 73 n 53 ASN 73 A SER 74 n 54 SER 74 A GLN 75 n 55 GLN 75 A ASP 76 n 56 ASP 76 A ARG 77 n 57 ARG 77 A ASP 78 n 58 ASP 78 A ILE 79 n 59 ILE 79 A HIS 80 n 60 HIS 80 A ILE 81 n 61 ILE 81 A ALA 82 n 62 ALA 82 A VAL 83 n 63 VAL 83 A ASP 84 n 64 ASP 84 A LYS 85 n 65 LYS 85 A ASP 86 n 66 ASP 86 A THR 87 n 67 THR 87 A LEU 88 n 68 LEU 88 A LYS 89 n 69 LYS 89 A THR 90 n 70 THR 90 A LEU 91 n 71 LEU 91 A ASN 92 n 72 ASN 92 A ILE 93 n 73 ILE 93 A GLU 94 n 74 GLU 94 A ARG 95 n 75 ARG 95 A PHE 96 n 76 PHE 96 A SER 97 n 77 SER 97 A LEU 98 n 78 LEU 98 A TYR 99 n 79 TYR 99 A ARG 100 n 80 ARG 100 A PRO 101 n 81 PRO 101 A GLU 102 n 82 GLU 102 A LEU 103 n 83 LEU 103 A TRP 104 n 84 TRP 104 A TYR 105 n 85 TYR 105 A THR 106 n 86 THR 106 A GLU 107 n 87 GLU 107 A MSE 108 n 88 MSE 108 A GLU 109 n 89 GLU 109 A GLU 110 n 90 GLU 110 A ASP 111 n 91 ASP 111 A LYS 112 n 92 LYS 112 A TYR 113 n 93 TYR 113 A GLU 114 n 94 GLU 114 A PHE 115 n 95 PHE 115 A PRO 116 n 96 PRO 116 A GLU 117 n 97 GLU 117 A THR 118 n 98 THR 118 A VAL 119 n 99 VAL 119 A HIS 120 n 100 HIS 120 A ILE 121 n 101 ILE 121 A PRO 122 n 102 PRO 122 A ALA 123 n 103 ALA 123 A GLY 124 n 104 GLY 124 A SER 125 n 105 SER 125 A CYS 126 n 106 CYS 126 A VAL 127 n 107 VAL 127 A GLU 128 n 108 GLU 128 A LEU 129 n 109 LEU 129 A LEU 130 n 110 LEU 130 A ASN 131 n 111 ASN 131 A ILE 132 n 112 ILE 132 A ASP 133 n 113 ASP 133 A PHE 134 n 114 PHE 134 A ASN 135 n 115 ASN 135 A LEU 136 n 116 LEU 136 A GLN 137 n 117 GLN 137 A ASP 138 n 118 ASP 138 A ILE 139 n 119 ILE 139 A ASP 140 n 120 ASP 140 A MSE 141 n 121 MSE 141 A LEU 142 n 122 LEU 142 A GLU 143 n 123 GLU 143 A LYS 144 n 124 LYS 144 A TRP 145 n 125 TRP 145 A VAL 146 n 126 VAL 146 A LEU 147 n 127 LEU 147 A PRO 148 n 128 PRO 148 A LEU 149 n 129 LEU 149 A THR 150 n 130 THR 150 A ILE 151 n 131 ILE 151 A VAL 152 n 132 VAL 152 A ASP 153 n 133 ASP 153 A ASP 154 n 134 ASP 154 A GLY 155 n 135 GLY 155 A SER 156 n 136 SER 156 A TYR 157 n 137 TYR 157 A ALA 158 n 138 ALA 158 A TYR 159 n 139 TYR 159 A GLN 160 n 140 GLN 160 A n 141 161 A n 142 162 A n 143 163 A n 144 164 A LYS 165 n 145 LYS 165 A ASN 166 n 146 ASN 166 A TYR 167 n 147 TYR 167 A ALA 168 n 148 ALA 168 A LYS 169 n 149 LYS 169 A ALA 170 n 150 ALA 170 A LEU 171 n 151 LEU 171 A LEU 172 n 152 LEU 172 A LYS 173 n 153 LYS 173 A VAL 174 n 154 VAL 174 A VAL 175 n 155 VAL 175 A PRO 176 n 156 PRO 176 A PHE 177 n 157 PHE 177 A ASN 178 n 158 ASN 178 A ASN 179 n 159 ASN 179 A TYR 180 n 160 TYR 180 A SER 181 n 161 SER 181 A GLY 182 n 162 GLY 182 A SER 183 n 163 SER 183 A TYR 184 n 164 TYR 184 A THR 185 n 165 THR 185 A ALA 186 n 166 ALA 186 A SER 187 n 167 SER 187 A SER 188 n 168 SER 188 A MSE 189 n 169 MSE 189 A LYS 190 n 170 LYS 190 A VAL 191 n 171 VAL 191 A TYR 192 n 172 TYR 192 A THR 193 n 173 THR 193 A TYR 194 n 174 TYR 194 A ILE 195 n 175 ILE 195 A ASN 196 n 176 ASN 196 A GLY 197 n 177 GLY 197 A LYS 198 n 178 LYS 198 A PRO 199 n 179 PRO 199 A ASP 200 n 180 ASP 200 A THR 201 n 181 THR 201 A ASN 202 n 182 ASN 202 A ALA 203 n 183 ALA 203 A ARG 204 n 184 ARG 204 A THR 205 n 185 THR 205 A THR 206 n 186 THR 206 A ASP 207 n 187 ASP 207 A LYS 208 n 188 LYS 208 A ARG 209 n 189 ARG 209 A THR 210 n 190 THR 210 A GLY 211 n 191 GLY 211 A TYR 212 n 192 TYR 212 A VAL 213 n 193 VAL 213 A VAL 214 n 194 VAL 214 A ASP 215 n 195 ASP 215 A ASN 216 n 196 ASN 216 A ASN 217 n 197 ASN 217 A SER 218 n 198 SER 218 A ILE 219 n 199 ILE 219 A PHE 220 n 200 PHE 220 A PHE 221 n 201 PHE 221 A TYR 222 n 202 TYR 222 A ALA 223 n 203 ALA 223 A GLY 224 n 204 GLY 224 A LEU 225 n 205 LEU 225 A ILE 226 n 206 ILE 226 A ASN 227 n 207 ASN 227 A GLU 228 n 208 GLU 228 A ASP 229 n 209 ASP 229 A MSE 230 n 210 MSE 230 A ASP 231 n 211 ASP 231 A LYS 232 n 212 LYS 232 A ASP 233 n 213 ASP 233 A MSE 234 n 214 MSE 234 A ARG 235 n 215 ARG 235 A LYS 236 n 216 LYS 236 A LYS 237 n 217 LYS 237 A TYR 238 n 218 TYR 238 A LYS 239 n 219 LYS 239 A ILE 240 n 220 ILE 240 A ASN 241 n 221 ASN 241 A VAL 242 n 222 VAL 242 A HIS 243 n 223 HIS 243 A PHE 244 n 224 PHE 244 A LYS 245 n 225 LYS 245 A GLU 246 n 226 GLU 246 A ASP 247 n 227 ASP 247 A GLY 248 n 228 GLY 248 A THR 249 n 229 THR 249 A LEU 250 n 230 LEU 250 A ASP 251 n 231 ASP 251 A MSE 252 n 232 MSE 252 A LYS 253 n 233 LYS 253 A GLN 254 n 234 GLN 254 A ASP 255 n 235 ASP 255 A ASP 256 n 236 ASP 256 A PRO 257 n 237 PRO 257 A SER 258 n 238 SER 258 A ASN 259 n 239 ASN 259 A GLU 260 n 240 GLU 260 A MSE 261 n 241 MSE 261 A GLU 262 n 242 GLU 262 A PHE 263 n 243 PHE 263 A GLU 264 n 244 GLU 264 A LEU 265 n 245 LEU 265 A ILE 266 n 246 ILE 266 A GLY 267 n 247 GLY 267 A THR 268 n 248 THR 268 A PRO 269 n 249 PRO 269 A THR 270 n 250 THR 270 A TYR 271 n 251 TYR 271 A SER 272 n 252 SER 272 A SER 273 n 253 SER 273 A THR 274 n 254 THR 274 A SER 275 n 255 SER 275 A VAL 276 n 256 VAL 276 A MSE 277 n 257 MSE 277 A ASP 278 n 258 ASP 278 A ALA 279 n 259 ALA 279 A THR 280 n 260 THR 280 A ARG 281 n 261 ARG 281 A PRO 282 n 262 PRO 282 A TYR 283 n 263 TYR 283 A LEU 284 n 264 LEU 284 A GLU 285 n 265 GLU 285 A ARG 286 n 266 ARG 286 A ARG 287 n 267 ARG 287 A TYR 288 n 268 TYR 288 A VAL 289 n 269 VAL 289 A GLN 290 n 270 GLN 290 A ILE 291 n 271 ILE 291 A MSE 292 n 272 MSE 292 A PHE 293 n 273 PHE 293 A GLU 294 n 274 GLU 294 A TYR 295 n 275 TYR 295 A ASP 296 n 276 ASP 296 A PHE 297 n 277 PHE 297 A GLN 298 n 278 GLN 298 A ASP 299 n 279 ASP 299 A PHE 300 n 280 PHE 300 A THR 301 n 281 THR 301 A TYR 302 n 282 TYR 302 A GLY 303 n 283 GLY 303 A GLY 304 n 284 GLY 304 A SER 305 n 285 SER 305 A GLY 306 n 286 GLY 306 A THR 307 n 287 THR 307 A GLU 308 n 288 GLU 308 A VAL 309 n 289 VAL 309 A ILE 310 n 290 ILE 310 A PRO 311 n 291 PRO 311 A ILE 312 n 292 ILE 312 A LYS 313 n 293 LYS 313 A TYR 314 n 294 TYR 314 A ARG 315 n 295 ARG 315 A VAL 316 n 296 VAL 316 A ALA 317 n 297 ALA 317 A GLY 318 n 298 GLY 318 A SER 319 n 299 SER 319 A MSE 320 n 300 MSE 320 A THR 321 n 301 THR 321 A LEU 322 n 302 LEU 322 A LEU 323 n 303 LEU 323 A ARG 324 n 304 ARG 324 A ASN 325 n 305 ASN 325 A ILE 326 n 306 ILE 326 A ASN 327 n 307 ASN 327 A THR 328 n 308 THR 328 A GLN 329 n 309 GLN 329 A ILE 330 n 310 ILE 330 A PRO 331 n 311 PRO 331 A ASP 332 n 312 ASP 332 A GLU 333 n 313 GLU 333 A ASP 334 n 314 ASP 334 A GLN 335 n 315 GLN 335 A GLN 336 n 316 GLN 336 A ILE 337 n 317 ILE 337 A GLU 338 n 318 GLU 338 A TRP 339 n 319 TRP 339 A 0.5417 -0.0767 -0.3697 1.4368 -0.4912 1.0519 -0.0248 -0.0402 -0.0101 0.1184 0.1046 0.1861 0.0158 -0.0368 -0.0797 0.1176 -0.0096 -0.0452 0.1519 0.0325 0.1676 refined 44.6370 21.3690 31.0480 X-RAY DIFFRACTION A 31 A 339 X-RAY DIFFRACTION 1 software_defined_assembly PISA 2 dimeric 3010 -7 29880 A MSE 108 SELENOMETHIONINE A MSE 88 MET A MSE 141 SELENOMETHIONINE A MSE 121 MET A MSE 189 SELENOMETHIONINE A MSE 169 MET A MSE 230 SELENOMETHIONINE A MSE 210 MET A MSE 234 SELENOMETHIONINE A MSE 214 MET A MSE 252 SELENOMETHIONINE A MSE 232 MET A MSE 261 SELENOMETHIONINE A MSE 241 MET A MSE 277 SELENOMETHIONINE A MSE 257 MET A MSE 292 SELENOMETHIONINE A MSE 272 MET A MSE 320 SELENOMETHIONINE A MSE 300 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 5_556 x-y,-y,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 66.8880000000 A N SER 34 A N SER 14 A O ILE 66 A O ILE 46 A N TYR 61 A N TYR 41 A O ILE 132 A O ILE 112 A O ASP 133 A O ASP 113 A N GLU 114 A N GLU 94 A N THR 47 A N THR 27 A O LYS 173 A O LYS 153 A O ALA 170 A O ALA 150 A N LEU 149 A N LEU 129 A O VAL 146 A O VAL 126 A N THR 106 A N THR 86 A N THR 47 A N THR 27 A O LYS 173 A O LYS 153 A O ALA 170 A O ALA 150 A N LEU 149 A N LEU 129 A O THR 150 A O THR 130 A N ALA 82 A N ALA 62 A N ILE 79 A N ILE 59 A O VAL 119 A O VAL 99 A N GLY 182 A N GLY 162 A O GLY 211 A O GLY 191 A N TYR 212 A N TYR 192 A O PHE 220 A O PHE 200 A N ILE 219 A N ILE 199 A O VAL 242 A O VAL 222 A N ASN 241 A N ASN 221 A O LYS 253 A O LYS 233 A O LYS 198 A O LYS 178 A N ILE 195 A N ILE 175 A N TYR 192 A N TYR 172 A O ARG 315 A O ARG 295 A O ILE 326 A O ILE 306 A N GLU 285 A N GLU 265 A O ASP 296 A O ASP 276 A N GLU 264 A N GLU 244 A O LYS 198 A O LYS 178 A N ILE 195 A N ILE 175 A N TYR 192 A N TYR 172 A O ARG 315 A O ARG 295 A O ILE 326 A O ILE 306 A N GLU 285 A N GLU 265 A O MSE 292 A O MSE 272 A N THR 270 A N THR 250 1 A CG ASN 56 A CG ASN 36 1 Y 1 A OD1 ASN 56 A OD1 ASN 36 1 Y 1 A ND2 ASN 56 A ND2 ASN 36 1 Y 1 A CE LYS 58 A CE LYS 38 1 Y 1 A NZ LYS 58 A NZ LYS 38 1 Y 1 A OG SER 70 A OG SER 50 1 Y 1 A CE LYS 85 A CE LYS 65 1 Y 1 A NZ LYS 85 A NZ LYS 65 1 Y 1 A CZ ARG 95 A CZ ARG 75 1 Y 1 A NH1 ARG 95 A NH1 ARG 75 1 Y 1 A NH2 ARG 95 A NH2 ARG 75 1 Y 1 A CG GLN 160 A CG GLN 140 1 Y 1 A CD GLN 160 A CD GLN 140 1 Y 1 A OE1 GLN 160 A OE1 GLN 140 1 Y 1 A NE2 GLN 160 A NE2 GLN 140 1 Y 1 A CG LYS 165 A CG LYS 145 1 Y 1 A CD LYS 165 A CD LYS 145 1 Y 1 A CE LYS 165 A CE LYS 145 1 Y 1 A NZ LYS 165 A NZ LYS 145 1 Y 1 A CE LYS 198 A CE LYS 178 1 Y 1 A NZ LYS 198 A NZ LYS 178 1 Y 1 A NZ LYS 236 A NZ LYS 216 1 Y 1 A GLY 21 A GLY 1 1 Y 1 A ASN 22 A ASN 2 1 Y 1 A GLU 23 A GLU 3 1 Y 1 A TRP 24 A TRP 4 1 Y 1 A GLU 25 A GLU 5 1 Y 1 A ASP 26 A ASP 6 1 Y 1 A GLU 27 A GLU 7 1 Y 1 A GLN 28 A GLN 8 1 Y 1 A TYR 29 A TYR 9 1 Y 1 A GLU 30 A GLU 10 1 Y 1 A SER 161 A SER 141 1 Y 1 A HIS 162 A HIS 142 1 Y 1 A PRO 163 A PRO 143 1 Y 1 A ARG 164 A ARG 144 1 Y 1 A LYS 54 -107.30 -110.07 1 A ASN 56 59.47 8.74 1 A SER 97 78.05 164.36 1 A ASP 153 -160.32 119.13 1 A ALA 158 70.26 -100.06 1 A TYR 159 69.50 72.07 1 A ASP 231 -33.53 127.53 110.73 51.264 21.85 0.830 0.420 0.000 0.830 0.000 -1.250 0.949 0.926 (1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. (2). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. (3). ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. (4). WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. (5). ETHYLENE GLYCOL (EDO), USED AS A CRYOPROTECTANT, WAS MODELED INTO THE STRUCTURE. 0.236 0.198 0.200 2.610 29.801 940 18334 5.100 99.870 1.00 0.33 16.365 0.171 RANDOM 1 THROUGHOUT 0.00 MAD 0.241 0.800 0.800 1.400 MAXIMUM LIKELIHOOD WITH PHASES MASK 2.610 29.801 79 2544 8 0 2457 0.015 0.022 2540 0.001 0.020 1700 0.917 1.959 3448 0.616 3.000 4149 5.140 5.000 309 29.494 24.800 125 12.664 15.000 434 17.688 15.000 12 0.064 0.200 378 0.007 0.021 2823 0.001 0.020 514 1.868 3.000 1530 0.325 3.000 615 3.578 5.000 2496 5.280 8.000 1010 8.114 11.000 949 0.469 0.387 2.678 81 1260 1341 20 99.780 2.61 29.801 3NQK 18340 0.158 1 11.700 99.900 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.5.0110 refinement P.D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE program model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk 2009/03/31 Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other 3.3.15 data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data reduction MOSFLM Y Crystal structure of a STRUCTURAL GENOMICS, UNKNOWN FUNCTION (BACOVA_03322) from Bacteroides ovatus at 2.61 A resolution 1 N N 2 N N 2 N N 3 N N ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A TRIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. A ASP 84 A ASP 64 HELX_P A SER 97 A SER 77 1 1 14 A ARG 100 A ARG 80 HELX_P A TRP 104 A TRP 84 5 2 5 A GLU 109 A GLU 89 HELX_P A ASP 111 A ASP 91 5 3 3 A ASP 231 A ASP 211 HELX_P A LYS 236 A LYS 216 1 4 6 covale 1.323 both A GLU 107 A C GLU 87 1_555 A MSE 108 A N MSE 88 1_555 covale 1.329 both A MSE 108 A C MSE 88 1_555 A GLU 109 A N GLU 89 1_555 covale 1.320 both A ASP 140 A C ASP 120 1_555 A MSE 141 A N MSE 121 1_555 covale 1.319 both A MSE 141 A C MSE 121 1_555 A LEU 142 A N LEU 122 1_555 covale 1.333 both A SER 188 A C SER 168 1_555 A MSE 189 A N MSE 169 1_555 covale 1.318 both A MSE 189 A C MSE 169 1_555 A LYS 190 A N LYS 170 1_555 covale 1.308 both A ASP 229 A C ASP 209 1_555 A MSE 230 A N MSE 210 1_555 covale 1.325 both A MSE 230 A C MSE 210 1_555 A ASP 231 A N ASP 211 1_555 covale 1.317 both A ASP 233 A C ASP 213 1_555 A MSE 234 A N MSE 214 1_555 covale 1.325 both A MSE 234 A C MSE 214 1_555 A ARG 235 A N ARG 215 1_555 covale 1.326 both A ASP 251 A C ASP 231 1_555 A MSE 252 A N MSE 232 1_555 covale 1.321 both A MSE 252 A C MSE 232 1_555 A LYS 253 A N LYS 233 1_555 covale 1.336 both A GLU 260 A C GLU 240 1_555 A MSE 261 A N MSE 241 1_555 covale 1.335 both A MSE 261 A C MSE 241 1_555 A GLU 262 A N GLU 242 1_555 covale 1.326 both A VAL 276 A C VAL 256 1_555 A MSE 277 A N MSE 257 1_555 covale 1.333 both A MSE 277 A C MSE 257 1_555 A ASP 278 A N ASP 258 1_555 covale 1.339 both A ILE 291 A C ILE 271 1_555 A MSE 292 A N MSE 272 1_555 covale 1.318 both A MSE 292 A C MSE 272 1_555 A PHE 293 A N PHE 273 1_555 covale 1.320 both A SER 319 A C SER 299 1_555 A MSE 320 A N MSE 300 1_555 covale 1.314 both A MSE 320 A C MSE 300 1_555 A THR 321 A N THR 301 1_555 STRUCTURAL GENOMICS, UNKNOWN FUNCTION STRUCTURAL GENOMICS, UNKNOWN FUNCTION, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2 A7LZP6_BACOV UNP 1 22 A7LZP6 NEWEDEQYEQYVSFKAPIASGSDGVTTIYVRYKDNGKVTYQLPIIVSGSTVNSQDRDIHIAVDKDTLKTLNIERFSLYRP ELWYTEMEEDKYEFPETVHIPAGSCVELLNIDFNLQDIDMLEKWVLPLTIVDDGSYAYQSHPRKNYAKALLKVVPFNNYS GSYTASSMKVYTYINGKPDTNARTTDKRTGYVVDNNSIFFYAGLINEDMDKDMRKKYKINVHFKEDGTLDMKQDDPSNEM EFELIGTPTYSSTSVMDATRPYLERRYVQIMFEYDFQDFTYGGSGTEVIPIKYRVAGSMTLLRNINTQIPDEDQQIEW 22 339 3NQK 22 339 A7LZP6 A 1 2 319 1 expression tag GLY 21 3NQK A A7LZP6 UNP 1 4 4 5 5 5 5 anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 32 A TYR 12 A PHE 35 A PHE 15 A LYS 58 A LYS 38 A SER 68 A SER 48 A VAL 127 A VAL 107 A ASN 135 A ASN 115 A TYR 113 A TYR 93 A GLU 114 A GLU 94 A THR 47 A THR 27 A ARG 52 A ARG 32 A LYS 169 A LYS 149 A PHE 177 A PHE 157 A TRP 145 A TRP 125 A ASP 153 A ASP 133 A THR 106 A THR 86 A GLU 107 A GLU 87 A THR 47 A THR 27 A ARG 52 A ARG 32 A LYS 169 A LYS 149 A PHE 177 A PHE 157 A TRP 145 A TRP 125 A ASP 153 A ASP 133 A ARG 77 A ARG 57 A VAL 83 A VAL 63 A THR 118 A THR 98 A ILE 121 A ILE 101 A GLY 182 A GLY 162 A THR 185 A THR 165 A LYS 208 A LYS 188 A ASP 215 A ASP 195 A SER 218 A SER 198 A TYR 222 A TYR 202 A LYS 239 A LYS 219 A PHE 244 A PHE 224 A LEU 250 A LEU 230 A GLN 254 A GLN 234 A LYS 198 A LYS 178 A ARG 204 A ARG 184 A MSE 189 A MSE 169 A ILE 195 A ILE 175 A ILE 312 A ILE 292 A ASN 327 A ASN 307 A LEU 284 A LEU 264 A ASP 299 A ASP 279 A GLU 264 A GLU 244 A LEU 265 A LEU 245 A LYS 198 A LYS 178 A ARG 204 A ARG 184 A MSE 189 A MSE 169 A ILE 195 A ILE 175 A ILE 312 A ILE 292 A ASN 327 A ASN 307 A LEU 284 A LEU 264 A ASP 299 A ASP 279 A THR 270 A THR 250 A MSE 277 A MSE 257 BINDING SITE FOR RESIDUE EDO A 401 A EDO 401 Software 4 BINDING SITE FOR RESIDUE EDO A 402 A EDO 402 Software 2 A GLY 42 A GLY 22 4 1_555 A SER 43 A SER 23 4 1_555 A ASP 44 A ASP 24 4 1_555 A VAL 46 A VAL 26 4 1_555 A GLU 114 A GLU 94 2 1_555 A PHE 115 A PHE 95 2 1_555 150 P 3 2 1