0.008060
0.004653
0.000000
0.000000
0.009307
0.000000
0.000000
0.000000
0.014950
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
124.073
124.073
66.888
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a STRUCTURAL GENOMICS, UNKNOWN FUNCTION (BACOVA_03322) from Bacteroides ovatus at 2.61 A resolution
10.2210/pdb3nqk/pdb
pdb_00003nqk
100
1
Flat mirror (vertical focusing)
CCD
2010-04-07
MARMOSAIC 325 mm CCD
Single crystal Si(111) bent monochromator (horizontal focusing)
MAD
M
x-ray
1
0.91837
1.0
0.97937
1.0
0.97908
1.0
BL11-1
SSRL
0.91837,0.97937,0.97908
SYNCHROTRON
SSRL BEAMLINE BL11-1
37451.086
uncharacterized protein
1
man
polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
18.015
water
79
nat
water
no
yes
GNEWEDEQYEQYVSFKAPIASGSDGVTTIYVRYKDNGKVTYQLPIIVSGSTVNSQDRDIHIAVDKDTLKTLNIERFSLYR
PELWYTE(MSE)EEDKYEFPETVHIPAGSCVELLNIDFNLQDID(MSE)LEKWVLPLTIVDDGSYAYQSHPRKNYAKALL
KVVPFNNYSGSYTASS(MSE)KVYTYINGKPDTNARTTDKRTGYVVDNNSIFFYAGLINED(MSE)DKD(MSE)RKKYKI
NVHFKEDGTLD(MSE)KQDDPSNE(MSE)EFELIGTPTYSSTSV(MSE)DATRPYLERRYVQI(MSE)FEYDFQDFTYGG
SGTEVIPIKYRVAGS(MSE)TLLRNINTQIPDEDQQIEW
GNEWEDEQYEQYVSFKAPIASGSDGVTTIYVRYKDNGKVTYQLPIIVSGSTVNSQDRDIHIAVDKDTLKTLNIERFSLYR
PELWYTEMEEDKYEFPETVHIPAGSCVELLNIDFNLQDIDMLEKWVLPLTIVDDGSYAYQSHPRKNYAKALLKVVPFNNY
SGSYTASSMKVYTYINGKPDTNARTTDKRTGYVVDNNSIFFYAGLINEDMDKDMRKKYKINVHFKEDGTLDMKQDDPSNE
MEFELIGTPTYSSTSVMDATRPYLERRYVQIMFEYDFQDFTYGGSGTEVIPIKYRVAGSMTLLRNINTQIPDEDQQIEW
A
416718
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 8483
sample
BACOVA_03322
411476
Bacteroides ovatus
562
Escherichia Coli
HK100
Plasmid
SpeedET
1
3.97
69.00
VAPOR DIFFUSION, SITTING DROP
6.6
0.200000000M (NH4)2Tartrate, 20.000000000% PEG-3350, No Buffer pH 6.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
software
software
struct_conn
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Refinement description
Data collection
Derived calculations
Refinement description
Database references
Derived calculations
1
0
2010-08-04
1
1
2011-07-13
1
2
2017-11-08
1
3
2019-07-17
1
4
2023-02-01
_software.classification
_software.name
_software.classification
_software.contact_author
_software.contact_author_email
_software.language
_software.location
_software.name
_software.type
_software.version
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2010-06-29
REL
REL
EDO
1,2-ETHANEDIOL
HOH
water
THE CONSTRUCT (22-339) WAS EXPRESSED WITH A N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 22 TO 339 OF THE TARGET SEQUENCE.
EDO
401
2
EDO
EDO
401
A
EDO
402
2
EDO
EDO
402
A
HOH
403
3
HOH
HOH
403
A
HOH
404
3
HOH
HOH
404
A
HOH
405
3
HOH
HOH
405
A
HOH
406
3
HOH
HOH
406
A
HOH
407
3
HOH
HOH
407
A
HOH
408
3
HOH
HOH
408
A
HOH
409
3
HOH
HOH
409
A
HOH
410
3
HOH
HOH
410
A
HOH
411
3
HOH
HOH
411
A
HOH
412
3
HOH
HOH
412
A
HOH
413
3
HOH
HOH
413
A
HOH
414
3
HOH
HOH
414
A
HOH
415
3
HOH
HOH
415
A
HOH
416
3
HOH
HOH
416
A
HOH
417
3
HOH
HOH
417
A
HOH
418
3
HOH
HOH
418
A
HOH
419
3
HOH
HOH
419
A
HOH
420
3
HOH
HOH
420
A
HOH
421
3
HOH
HOH
421
A
HOH
422
3
HOH
HOH
422
A
HOH
423
3
HOH
HOH
423
A
HOH
424
3
HOH
HOH
424
A
HOH
425
3
HOH
HOH
425
A
HOH
426
3
HOH
HOH
426
A
HOH
427
3
HOH
HOH
427
A
HOH
428
3
HOH
HOH
428
A
HOH
429
3
HOH
HOH
429
A
HOH
430
3
HOH
HOH
430
A
HOH
431
3
HOH
HOH
431
A
HOH
432
3
HOH
HOH
432
A
HOH
433
3
HOH
HOH
433
A
HOH
434
3
HOH
HOH
434
A
HOH
435
3
HOH
HOH
435
A
HOH
436
3
HOH
HOH
436
A
HOH
437
3
HOH
HOH
437
A
HOH
438
3
HOH
HOH
438
A
HOH
439
3
HOH
HOH
439
A
HOH
440
3
HOH
HOH
440
A
HOH
441
3
HOH
HOH
441
A
HOH
442
3
HOH
HOH
442
A
HOH
443
3
HOH
HOH
443
A
HOH
444
3
HOH
HOH
444
A
HOH
445
3
HOH
HOH
445
A
HOH
446
3
HOH
HOH
446
A
HOH
447
3
HOH
HOH
447
A
HOH
448
3
HOH
HOH
448
A
HOH
449
3
HOH
HOH
449
A
HOH
450
3
HOH
HOH
450
A
HOH
451
3
HOH
HOH
451
A
HOH
452
3
HOH
HOH
452
A
HOH
453
3
HOH
HOH
453
A
HOH
454
3
HOH
HOH
454
A
HOH
455
3
HOH
HOH
455
A
HOH
456
3
HOH
HOH
456
A
HOH
457
3
HOH
HOH
457
A
HOH
458
3
HOH
HOH
458
A
HOH
459
3
HOH
HOH
459
A
HOH
460
3
HOH
HOH
460
A
HOH
461
3
HOH
HOH
461
A
HOH
462
3
HOH
HOH
462
A
HOH
463
3
HOH
HOH
463
A
HOH
464
3
HOH
HOH
464
A
HOH
465
3
HOH
HOH
465
A
HOH
466
3
HOH
HOH
466
A
HOH
467
3
HOH
HOH
467
A
HOH
468
3
HOH
HOH
468
A
HOH
469
3
HOH
HOH
469
A
HOH
470
3
HOH
HOH
470
A
HOH
471
3
HOH
HOH
471
A
HOH
472
3
HOH
HOH
472
A
HOH
473
3
HOH
HOH
473
A
HOH
474
3
HOH
HOH
474
A
HOH
475
3
HOH
HOH
475
A
HOH
476
3
HOH
HOH
476
A
HOH
477
3
HOH
HOH
477
A
HOH
478
3
HOH
HOH
478
A
HOH
479
3
HOH
HOH
479
A
HOH
480
3
HOH
HOH
480
A
HOH
481
3
HOH
HOH
481
A
n
1
21
A
n
2
22
A
n
3
23
A
n
4
24
A
n
5
25
A
n
6
26
A
n
7
27
A
n
8
28
A
n
9
29
A
n
10
30
A
GLN
31
n
11
GLN
31
A
TYR
32
n
12
TYR
32
A
VAL
33
n
13
VAL
33
A
SER
34
n
14
SER
34
A
PHE
35
n
15
PHE
35
A
LYS
36
n
16
LYS
36
A
ALA
37
n
17
ALA
37
A
PRO
38
n
18
PRO
38
A
ILE
39
n
19
ILE
39
A
ALA
40
n
20
ALA
40
A
SER
41
n
21
SER
41
A
GLY
42
n
22
GLY
42
A
SER
43
n
23
SER
43
A
ASP
44
n
24
ASP
44
A
GLY
45
n
25
GLY
45
A
VAL
46
n
26
VAL
46
A
THR
47
n
27
THR
47
A
THR
48
n
28
THR
48
A
ILE
49
n
29
ILE
49
A
TYR
50
n
30
TYR
50
A
VAL
51
n
31
VAL
51
A
ARG
52
n
32
ARG
52
A
TYR
53
n
33
TYR
53
A
LYS
54
n
34
LYS
54
A
ASP
55
n
35
ASP
55
A
ASN
56
n
36
ASN
56
A
GLY
57
n
37
GLY
57
A
LYS
58
n
38
LYS
58
A
VAL
59
n
39
VAL
59
A
THR
60
n
40
THR
60
A
TYR
61
n
41
TYR
61
A
GLN
62
n
42
GLN
62
A
LEU
63
n
43
LEU
63
A
PRO
64
n
44
PRO
64
A
ILE
65
n
45
ILE
65
A
ILE
66
n
46
ILE
66
A
VAL
67
n
47
VAL
67
A
SER
68
n
48
SER
68
A
GLY
69
n
49
GLY
69
A
SER
70
n
50
SER
70
A
THR
71
n
51
THR
71
A
VAL
72
n
52
VAL
72
A
ASN
73
n
53
ASN
73
A
SER
74
n
54
SER
74
A
GLN
75
n
55
GLN
75
A
ASP
76
n
56
ASP
76
A
ARG
77
n
57
ARG
77
A
ASP
78
n
58
ASP
78
A
ILE
79
n
59
ILE
79
A
HIS
80
n
60
HIS
80
A
ILE
81
n
61
ILE
81
A
ALA
82
n
62
ALA
82
A
VAL
83
n
63
VAL
83
A
ASP
84
n
64
ASP
84
A
LYS
85
n
65
LYS
85
A
ASP
86
n
66
ASP
86
A
THR
87
n
67
THR
87
A
LEU
88
n
68
LEU
88
A
LYS
89
n
69
LYS
89
A
THR
90
n
70
THR
90
A
LEU
91
n
71
LEU
91
A
ASN
92
n
72
ASN
92
A
ILE
93
n
73
ILE
93
A
GLU
94
n
74
GLU
94
A
ARG
95
n
75
ARG
95
A
PHE
96
n
76
PHE
96
A
SER
97
n
77
SER
97
A
LEU
98
n
78
LEU
98
A
TYR
99
n
79
TYR
99
A
ARG
100
n
80
ARG
100
A
PRO
101
n
81
PRO
101
A
GLU
102
n
82
GLU
102
A
LEU
103
n
83
LEU
103
A
TRP
104
n
84
TRP
104
A
TYR
105
n
85
TYR
105
A
THR
106
n
86
THR
106
A
GLU
107
n
87
GLU
107
A
MSE
108
n
88
MSE
108
A
GLU
109
n
89
GLU
109
A
GLU
110
n
90
GLU
110
A
ASP
111
n
91
ASP
111
A
LYS
112
n
92
LYS
112
A
TYR
113
n
93
TYR
113
A
GLU
114
n
94
GLU
114
A
PHE
115
n
95
PHE
115
A
PRO
116
n
96
PRO
116
A
GLU
117
n
97
GLU
117
A
THR
118
n
98
THR
118
A
VAL
119
n
99
VAL
119
A
HIS
120
n
100
HIS
120
A
ILE
121
n
101
ILE
121
A
PRO
122
n
102
PRO
122
A
ALA
123
n
103
ALA
123
A
GLY
124
n
104
GLY
124
A
SER
125
n
105
SER
125
A
CYS
126
n
106
CYS
126
A
VAL
127
n
107
VAL
127
A
GLU
128
n
108
GLU
128
A
LEU
129
n
109
LEU
129
A
LEU
130
n
110
LEU
130
A
ASN
131
n
111
ASN
131
A
ILE
132
n
112
ILE
132
A
ASP
133
n
113
ASP
133
A
PHE
134
n
114
PHE
134
A
ASN
135
n
115
ASN
135
A
LEU
136
n
116
LEU
136
A
GLN
137
n
117
GLN
137
A
ASP
138
n
118
ASP
138
A
ILE
139
n
119
ILE
139
A
ASP
140
n
120
ASP
140
A
MSE
141
n
121
MSE
141
A
LEU
142
n
122
LEU
142
A
GLU
143
n
123
GLU
143
A
LYS
144
n
124
LYS
144
A
TRP
145
n
125
TRP
145
A
VAL
146
n
126
VAL
146
A
LEU
147
n
127
LEU
147
A
PRO
148
n
128
PRO
148
A
LEU
149
n
129
LEU
149
A
THR
150
n
130
THR
150
A
ILE
151
n
131
ILE
151
A
VAL
152
n
132
VAL
152
A
ASP
153
n
133
ASP
153
A
ASP
154
n
134
ASP
154
A
GLY
155
n
135
GLY
155
A
SER
156
n
136
SER
156
A
TYR
157
n
137
TYR
157
A
ALA
158
n
138
ALA
158
A
TYR
159
n
139
TYR
159
A
GLN
160
n
140
GLN
160
A
n
141
161
A
n
142
162
A
n
143
163
A
n
144
164
A
LYS
165
n
145
LYS
165
A
ASN
166
n
146
ASN
166
A
TYR
167
n
147
TYR
167
A
ALA
168
n
148
ALA
168
A
LYS
169
n
149
LYS
169
A
ALA
170
n
150
ALA
170
A
LEU
171
n
151
LEU
171
A
LEU
172
n
152
LEU
172
A
LYS
173
n
153
LYS
173
A
VAL
174
n
154
VAL
174
A
VAL
175
n
155
VAL
175
A
PRO
176
n
156
PRO
176
A
PHE
177
n
157
PHE
177
A
ASN
178
n
158
ASN
178
A
ASN
179
n
159
ASN
179
A
TYR
180
n
160
TYR
180
A
SER
181
n
161
SER
181
A
GLY
182
n
162
GLY
182
A
SER
183
n
163
SER
183
A
TYR
184
n
164
TYR
184
A
THR
185
n
165
THR
185
A
ALA
186
n
166
ALA
186
A
SER
187
n
167
SER
187
A
SER
188
n
168
SER
188
A
MSE
189
n
169
MSE
189
A
LYS
190
n
170
LYS
190
A
VAL
191
n
171
VAL
191
A
TYR
192
n
172
TYR
192
A
THR
193
n
173
THR
193
A
TYR
194
n
174
TYR
194
A
ILE
195
n
175
ILE
195
A
ASN
196
n
176
ASN
196
A
GLY
197
n
177
GLY
197
A
LYS
198
n
178
LYS
198
A
PRO
199
n
179
PRO
199
A
ASP
200
n
180
ASP
200
A
THR
201
n
181
THR
201
A
ASN
202
n
182
ASN
202
A
ALA
203
n
183
ALA
203
A
ARG
204
n
184
ARG
204
A
THR
205
n
185
THR
205
A
THR
206
n
186
THR
206
A
ASP
207
n
187
ASP
207
A
LYS
208
n
188
LYS
208
A
ARG
209
n
189
ARG
209
A
THR
210
n
190
THR
210
A
GLY
211
n
191
GLY
211
A
TYR
212
n
192
TYR
212
A
VAL
213
n
193
VAL
213
A
VAL
214
n
194
VAL
214
A
ASP
215
n
195
ASP
215
A
ASN
216
n
196
ASN
216
A
ASN
217
n
197
ASN
217
A
SER
218
n
198
SER
218
A
ILE
219
n
199
ILE
219
A
PHE
220
n
200
PHE
220
A
PHE
221
n
201
PHE
221
A
TYR
222
n
202
TYR
222
A
ALA
223
n
203
ALA
223
A
GLY
224
n
204
GLY
224
A
LEU
225
n
205
LEU
225
A
ILE
226
n
206
ILE
226
A
ASN
227
n
207
ASN
227
A
GLU
228
n
208
GLU
228
A
ASP
229
n
209
ASP
229
A
MSE
230
n
210
MSE
230
A
ASP
231
n
211
ASP
231
A
LYS
232
n
212
LYS
232
A
ASP
233
n
213
ASP
233
A
MSE
234
n
214
MSE
234
A
ARG
235
n
215
ARG
235
A
LYS
236
n
216
LYS
236
A
LYS
237
n
217
LYS
237
A
TYR
238
n
218
TYR
238
A
LYS
239
n
219
LYS
239
A
ILE
240
n
220
ILE
240
A
ASN
241
n
221
ASN
241
A
VAL
242
n
222
VAL
242
A
HIS
243
n
223
HIS
243
A
PHE
244
n
224
PHE
244
A
LYS
245
n
225
LYS
245
A
GLU
246
n
226
GLU
246
A
ASP
247
n
227
ASP
247
A
GLY
248
n
228
GLY
248
A
THR
249
n
229
THR
249
A
LEU
250
n
230
LEU
250
A
ASP
251
n
231
ASP
251
A
MSE
252
n
232
MSE
252
A
LYS
253
n
233
LYS
253
A
GLN
254
n
234
GLN
254
A
ASP
255
n
235
ASP
255
A
ASP
256
n
236
ASP
256
A
PRO
257
n
237
PRO
257
A
SER
258
n
238
SER
258
A
ASN
259
n
239
ASN
259
A
GLU
260
n
240
GLU
260
A
MSE
261
n
241
MSE
261
A
GLU
262
n
242
GLU
262
A
PHE
263
n
243
PHE
263
A
GLU
264
n
244
GLU
264
A
LEU
265
n
245
LEU
265
A
ILE
266
n
246
ILE
266
A
GLY
267
n
247
GLY
267
A
THR
268
n
248
THR
268
A
PRO
269
n
249
PRO
269
A
THR
270
n
250
THR
270
A
TYR
271
n
251
TYR
271
A
SER
272
n
252
SER
272
A
SER
273
n
253
SER
273
A
THR
274
n
254
THR
274
A
SER
275
n
255
SER
275
A
VAL
276
n
256
VAL
276
A
MSE
277
n
257
MSE
277
A
ASP
278
n
258
ASP
278
A
ALA
279
n
259
ALA
279
A
THR
280
n
260
THR
280
A
ARG
281
n
261
ARG
281
A
PRO
282
n
262
PRO
282
A
TYR
283
n
263
TYR
283
A
LEU
284
n
264
LEU
284
A
GLU
285
n
265
GLU
285
A
ARG
286
n
266
ARG
286
A
ARG
287
n
267
ARG
287
A
TYR
288
n
268
TYR
288
A
VAL
289
n
269
VAL
289
A
GLN
290
n
270
GLN
290
A
ILE
291
n
271
ILE
291
A
MSE
292
n
272
MSE
292
A
PHE
293
n
273
PHE
293
A
GLU
294
n
274
GLU
294
A
TYR
295
n
275
TYR
295
A
ASP
296
n
276
ASP
296
A
PHE
297
n
277
PHE
297
A
GLN
298
n
278
GLN
298
A
ASP
299
n
279
ASP
299
A
PHE
300
n
280
PHE
300
A
THR
301
n
281
THR
301
A
TYR
302
n
282
TYR
302
A
GLY
303
n
283
GLY
303
A
GLY
304
n
284
GLY
304
A
SER
305
n
285
SER
305
A
GLY
306
n
286
GLY
306
A
THR
307
n
287
THR
307
A
GLU
308
n
288
GLU
308
A
VAL
309
n
289
VAL
309
A
ILE
310
n
290
ILE
310
A
PRO
311
n
291
PRO
311
A
ILE
312
n
292
ILE
312
A
LYS
313
n
293
LYS
313
A
TYR
314
n
294
TYR
314
A
ARG
315
n
295
ARG
315
A
VAL
316
n
296
VAL
316
A
ALA
317
n
297
ALA
317
A
GLY
318
n
298
GLY
318
A
SER
319
n
299
SER
319
A
MSE
320
n
300
MSE
320
A
THR
321
n
301
THR
321
A
LEU
322
n
302
LEU
322
A
LEU
323
n
303
LEU
323
A
ARG
324
n
304
ARG
324
A
ASN
325
n
305
ASN
325
A
ILE
326
n
306
ILE
326
A
ASN
327
n
307
ASN
327
A
THR
328
n
308
THR
328
A
GLN
329
n
309
GLN
329
A
ILE
330
n
310
ILE
330
A
PRO
331
n
311
PRO
331
A
ASP
332
n
312
ASP
332
A
GLU
333
n
313
GLU
333
A
ASP
334
n
314
ASP
334
A
GLN
335
n
315
GLN
335
A
GLN
336
n
316
GLN
336
A
ILE
337
n
317
ILE
337
A
GLU
338
n
318
GLU
338
A
TRP
339
n
319
TRP
339
A
0.5417
-0.0767
-0.3697
1.4368
-0.4912
1.0519
-0.0248
-0.0402
-0.0101
0.1184
0.1046
0.1861
0.0158
-0.0368
-0.0797
0.1176
-0.0096
-0.0452
0.1519
0.0325
0.1676
refined
44.6370
21.3690
31.0480
X-RAY DIFFRACTION
A
31
A
339
X-RAY DIFFRACTION
1
software_defined_assembly
PISA
2
dimeric
3010
-7
29880
A
MSE
108
SELENOMETHIONINE
A
MSE
88
MET
A
MSE
141
SELENOMETHIONINE
A
MSE
121
MET
A
MSE
189
SELENOMETHIONINE
A
MSE
169
MET
A
MSE
230
SELENOMETHIONINE
A
MSE
210
MET
A
MSE
234
SELENOMETHIONINE
A
MSE
214
MET
A
MSE
252
SELENOMETHIONINE
A
MSE
232
MET
A
MSE
261
SELENOMETHIONINE
A
MSE
241
MET
A
MSE
277
SELENOMETHIONINE
A
MSE
257
MET
A
MSE
292
SELENOMETHIONINE
A
MSE
272
MET
A
MSE
320
SELENOMETHIONINE
A
MSE
300
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_556
x-y,-y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
66.8880000000
A
N
SER
34
A
N
SER
14
A
O
ILE
66
A
O
ILE
46
A
N
TYR
61
A
N
TYR
41
A
O
ILE
132
A
O
ILE
112
A
O
ASP
133
A
O
ASP
113
A
N
GLU
114
A
N
GLU
94
A
N
THR
47
A
N
THR
27
A
O
LYS
173
A
O
LYS
153
A
O
ALA
170
A
O
ALA
150
A
N
LEU
149
A
N
LEU
129
A
O
VAL
146
A
O
VAL
126
A
N
THR
106
A
N
THR
86
A
N
THR
47
A
N
THR
27
A
O
LYS
173
A
O
LYS
153
A
O
ALA
170
A
O
ALA
150
A
N
LEU
149
A
N
LEU
129
A
O
THR
150
A
O
THR
130
A
N
ALA
82
A
N
ALA
62
A
N
ILE
79
A
N
ILE
59
A
O
VAL
119
A
O
VAL
99
A
N
GLY
182
A
N
GLY
162
A
O
GLY
211
A
O
GLY
191
A
N
TYR
212
A
N
TYR
192
A
O
PHE
220
A
O
PHE
200
A
N
ILE
219
A
N
ILE
199
A
O
VAL
242
A
O
VAL
222
A
N
ASN
241
A
N
ASN
221
A
O
LYS
253
A
O
LYS
233
A
O
LYS
198
A
O
LYS
178
A
N
ILE
195
A
N
ILE
175
A
N
TYR
192
A
N
TYR
172
A
O
ARG
315
A
O
ARG
295
A
O
ILE
326
A
O
ILE
306
A
N
GLU
285
A
N
GLU
265
A
O
ASP
296
A
O
ASP
276
A
N
GLU
264
A
N
GLU
244
A
O
LYS
198
A
O
LYS
178
A
N
ILE
195
A
N
ILE
175
A
N
TYR
192
A
N
TYR
172
A
O
ARG
315
A
O
ARG
295
A
O
ILE
326
A
O
ILE
306
A
N
GLU
285
A
N
GLU
265
A
O
MSE
292
A
O
MSE
272
A
N
THR
270
A
N
THR
250
1
A
CG
ASN
56
A
CG
ASN
36
1
Y
1
A
OD1
ASN
56
A
OD1
ASN
36
1
Y
1
A
ND2
ASN
56
A
ND2
ASN
36
1
Y
1
A
CE
LYS
58
A
CE
LYS
38
1
Y
1
A
NZ
LYS
58
A
NZ
LYS
38
1
Y
1
A
OG
SER
70
A
OG
SER
50
1
Y
1
A
CE
LYS
85
A
CE
LYS
65
1
Y
1
A
NZ
LYS
85
A
NZ
LYS
65
1
Y
1
A
CZ
ARG
95
A
CZ
ARG
75
1
Y
1
A
NH1
ARG
95
A
NH1
ARG
75
1
Y
1
A
NH2
ARG
95
A
NH2
ARG
75
1
Y
1
A
CG
GLN
160
A
CG
GLN
140
1
Y
1
A
CD
GLN
160
A
CD
GLN
140
1
Y
1
A
OE1
GLN
160
A
OE1
GLN
140
1
Y
1
A
NE2
GLN
160
A
NE2
GLN
140
1
Y
1
A
CG
LYS
165
A
CG
LYS
145
1
Y
1
A
CD
LYS
165
A
CD
LYS
145
1
Y
1
A
CE
LYS
165
A
CE
LYS
145
1
Y
1
A
NZ
LYS
165
A
NZ
LYS
145
1
Y
1
A
CE
LYS
198
A
CE
LYS
178
1
Y
1
A
NZ
LYS
198
A
NZ
LYS
178
1
Y
1
A
NZ
LYS
236
A
NZ
LYS
216
1
Y
1
A
GLY
21
A
GLY
1
1
Y
1
A
ASN
22
A
ASN
2
1
Y
1
A
GLU
23
A
GLU
3
1
Y
1
A
TRP
24
A
TRP
4
1
Y
1
A
GLU
25
A
GLU
5
1
Y
1
A
ASP
26
A
ASP
6
1
Y
1
A
GLU
27
A
GLU
7
1
Y
1
A
GLN
28
A
GLN
8
1
Y
1
A
TYR
29
A
TYR
9
1
Y
1
A
GLU
30
A
GLU
10
1
Y
1
A
SER
161
A
SER
141
1
Y
1
A
HIS
162
A
HIS
142
1
Y
1
A
PRO
163
A
PRO
143
1
Y
1
A
ARG
164
A
ARG
144
1
Y
1
A
LYS
54
-107.30
-110.07
1
A
ASN
56
59.47
8.74
1
A
SER
97
78.05
164.36
1
A
ASP
153
-160.32
119.13
1
A
ALA
158
70.26
-100.06
1
A
TYR
159
69.50
72.07
1
A
ASP
231
-33.53
127.53
110.73
51.264
21.85
0.830
0.420
0.000
0.830
0.000
-1.250
0.949
0.926
(1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. (2). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. (3). ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. (4). WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. (5). ETHYLENE GLYCOL (EDO), USED AS A CRYOPROTECTANT, WAS MODELED INTO THE STRUCTURE.
0.236
0.198
0.200
2.610
29.801
940
18334
5.100
99.870
1.00
0.33
16.365
0.171
RANDOM
1
THROUGHOUT
0.00
MAD
0.241
0.800
0.800
1.400
MAXIMUM LIKELIHOOD WITH PHASES
MASK
2.610
29.801
79
2544
8
0
2457
0.015
0.022
2540
0.001
0.020
1700
0.917
1.959
3448
0.616
3.000
4149
5.140
5.000
309
29.494
24.800
125
12.664
15.000
434
17.688
15.000
12
0.064
0.200
378
0.007
0.021
2823
0.001
0.020
514
1.868
3.000
1530
0.325
3.000
615
3.578
5.000
2496
5.280
8.000
1010
8.114
11.000
949
0.469
0.387
2.678
81
1260
1341
20
99.780
2.61
29.801
3NQK
18340
0.158
1
11.700
99.900
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0110
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
program
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2009/03/31
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.15
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data reduction
MOSFLM
Y
Crystal structure of a STRUCTURAL GENOMICS, UNKNOWN FUNCTION (BACOVA_03322) from Bacteroides ovatus at 2.61 A resolution
1
N
N
2
N
N
2
N
N
3
N
N
ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A TRIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.
A
ASP
84
A
ASP
64
HELX_P
A
SER
97
A
SER
77
1
1
14
A
ARG
100
A
ARG
80
HELX_P
A
TRP
104
A
TRP
84
5
2
5
A
GLU
109
A
GLU
89
HELX_P
A
ASP
111
A
ASP
91
5
3
3
A
ASP
231
A
ASP
211
HELX_P
A
LYS
236
A
LYS
216
1
4
6
covale
1.323
both
A
GLU
107
A
C
GLU
87
1_555
A
MSE
108
A
N
MSE
88
1_555
covale
1.329
both
A
MSE
108
A
C
MSE
88
1_555
A
GLU
109
A
N
GLU
89
1_555
covale
1.320
both
A
ASP
140
A
C
ASP
120
1_555
A
MSE
141
A
N
MSE
121
1_555
covale
1.319
both
A
MSE
141
A
C
MSE
121
1_555
A
LEU
142
A
N
LEU
122
1_555
covale
1.333
both
A
SER
188
A
C
SER
168
1_555
A
MSE
189
A
N
MSE
169
1_555
covale
1.318
both
A
MSE
189
A
C
MSE
169
1_555
A
LYS
190
A
N
LYS
170
1_555
covale
1.308
both
A
ASP
229
A
C
ASP
209
1_555
A
MSE
230
A
N
MSE
210
1_555
covale
1.325
both
A
MSE
230
A
C
MSE
210
1_555
A
ASP
231
A
N
ASP
211
1_555
covale
1.317
both
A
ASP
233
A
C
ASP
213
1_555
A
MSE
234
A
N
MSE
214
1_555
covale
1.325
both
A
MSE
234
A
C
MSE
214
1_555
A
ARG
235
A
N
ARG
215
1_555
covale
1.326
both
A
ASP
251
A
C
ASP
231
1_555
A
MSE
252
A
N
MSE
232
1_555
covale
1.321
both
A
MSE
252
A
C
MSE
232
1_555
A
LYS
253
A
N
LYS
233
1_555
covale
1.336
both
A
GLU
260
A
C
GLU
240
1_555
A
MSE
261
A
N
MSE
241
1_555
covale
1.335
both
A
MSE
261
A
C
MSE
241
1_555
A
GLU
262
A
N
GLU
242
1_555
covale
1.326
both
A
VAL
276
A
C
VAL
256
1_555
A
MSE
277
A
N
MSE
257
1_555
covale
1.333
both
A
MSE
277
A
C
MSE
257
1_555
A
ASP
278
A
N
ASP
258
1_555
covale
1.339
both
A
ILE
291
A
C
ILE
271
1_555
A
MSE
292
A
N
MSE
272
1_555
covale
1.318
both
A
MSE
292
A
C
MSE
272
1_555
A
PHE
293
A
N
PHE
273
1_555
covale
1.320
both
A
SER
319
A
C
SER
299
1_555
A
MSE
320
A
N
MSE
300
1_555
covale
1.314
both
A
MSE
320
A
C
MSE
300
1_555
A
THR
321
A
N
THR
301
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
STRUCTURAL GENOMICS, UNKNOWN FUNCTION, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2
A7LZP6_BACOV
UNP
1
22
A7LZP6
NEWEDEQYEQYVSFKAPIASGSDGVTTIYVRYKDNGKVTYQLPIIVSGSTVNSQDRDIHIAVDKDTLKTLNIERFSLYRP
ELWYTEMEEDKYEFPETVHIPAGSCVELLNIDFNLQDIDMLEKWVLPLTIVDDGSYAYQSHPRKNYAKALLKVVPFNNYS
GSYTASSMKVYTYINGKPDTNARTTDKRTGYVVDNNSIFFYAGLINEDMDKDMRKKYKINVHFKEDGTLDMKQDDPSNEM
EFELIGTPTYSSTSVMDATRPYLERRYVQIMFEYDFQDFTYGGSGTEVIPIKYRVAGSMTLLRNINTQIPDEDQQIEW
22
339
3NQK
22
339
A7LZP6
A
1
2
319
1
expression tag
GLY
21
3NQK
A
A7LZP6
UNP
1
4
4
5
5
5
5
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
32
A
TYR
12
A
PHE
35
A
PHE
15
A
LYS
58
A
LYS
38
A
SER
68
A
SER
48
A
VAL
127
A
VAL
107
A
ASN
135
A
ASN
115
A
TYR
113
A
TYR
93
A
GLU
114
A
GLU
94
A
THR
47
A
THR
27
A
ARG
52
A
ARG
32
A
LYS
169
A
LYS
149
A
PHE
177
A
PHE
157
A
TRP
145
A
TRP
125
A
ASP
153
A
ASP
133
A
THR
106
A
THR
86
A
GLU
107
A
GLU
87
A
THR
47
A
THR
27
A
ARG
52
A
ARG
32
A
LYS
169
A
LYS
149
A
PHE
177
A
PHE
157
A
TRP
145
A
TRP
125
A
ASP
153
A
ASP
133
A
ARG
77
A
ARG
57
A
VAL
83
A
VAL
63
A
THR
118
A
THR
98
A
ILE
121
A
ILE
101
A
GLY
182
A
GLY
162
A
THR
185
A
THR
165
A
LYS
208
A
LYS
188
A
ASP
215
A
ASP
195
A
SER
218
A
SER
198
A
TYR
222
A
TYR
202
A
LYS
239
A
LYS
219
A
PHE
244
A
PHE
224
A
LEU
250
A
LEU
230
A
GLN
254
A
GLN
234
A
LYS
198
A
LYS
178
A
ARG
204
A
ARG
184
A
MSE
189
A
MSE
169
A
ILE
195
A
ILE
175
A
ILE
312
A
ILE
292
A
ASN
327
A
ASN
307
A
LEU
284
A
LEU
264
A
ASP
299
A
ASP
279
A
GLU
264
A
GLU
244
A
LEU
265
A
LEU
245
A
LYS
198
A
LYS
178
A
ARG
204
A
ARG
184
A
MSE
189
A
MSE
169
A
ILE
195
A
ILE
175
A
ILE
312
A
ILE
292
A
ASN
327
A
ASN
307
A
LEU
284
A
LEU
264
A
ASP
299
A
ASP
279
A
THR
270
A
THR
250
A
MSE
277
A
MSE
257
BINDING SITE FOR RESIDUE EDO A 401
A
EDO
401
Software
4
BINDING SITE FOR RESIDUE EDO A 402
A
EDO
402
Software
2
A
GLY
42
A
GLY
22
4
1_555
A
SER
43
A
SER
23
4
1_555
A
ASP
44
A
ASP
24
4
1_555
A
VAL
46
A
VAL
26
4
1_555
A
GLU
114
A
GLU
94
2
1_555
A
PHE
115
A
PHE
95
2
1_555
150
P 3 2 1