0.014339
0.000000
0.000000
0.000000
0.013760
0.000000
0.000000
0.000000
0.013145
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
69.739
72.672
76.072
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a MarR family transcriptional regulator (CD1569) from Clostridium difficile 630 at 2.20 A resolution
10.2210/pdb3nqo/pdb
pdb_00003nqo
100
1
Flat collimating mirror, toroid focusing mirror
CCD
2010-03-12
MARMOSAIC 325 mm CCD
Double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.97911
1.0
BL9-2
SSRL
0.97911
SYNCHROTRON
SSRL BEAMLINE BL9-2
22458.258
MarR-family transcriptional regulator
2
man
polymer
92.094
GLYCEROL
2
syn
non-polymer
194.226
TETRAETHYLENE GLYCOL
5
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
63
nat
water
no
yes
G(MSE)DYSNELKELFL(MSE)NQTYATLFTLTNKIQIEGDKYFGILTSRQY(MSE)TILSILHLPEEETTLNNIARK
(MSE)GTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKV(MSE)VTCSRTGINF(MSE)ADVFHEFTKDEL
ETLWSLLKK(MSE)YRFNGEEQDGFEEDANF(MSE)EYEEIDKIKSEALEEFAKRRNRVNKND
GMDYSNELKELFLMNQTYATLFTLTNKIQIEGDKYFGILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVAN
LEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTGINFMADVFHEFTKDELETLWSLLKKMYRFNGEEQDGFEEDAN
FMEYEEIDKIKSEALEEFAKRRNRVNKND
A,B
399389
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
630
sample
CD1569
272563
Clostridium difficile
562
Escherichia coli
HK100
Plasmid
SpeedET
1
2.15
42.68
VAPOR DIFFUSION, SITTING DROP
7.47
47.0000% polyethylene glycol 200, 0.1M HEPES pH 7.47, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
pdbx_struct_assembly_auth_evidence
software
software
struct_conn
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Author supporting evidence
Refinement description
Data collection
Derived calculations
Refinement description
Database references
Derived calculations
1
0
2010-07-21
1
1
2011-07-13
1
2
2017-10-25
1
3
2019-07-17
1
4
2023-02-01
_software.classification
_software.name
_software.classification
_software.contact_author
_software.contact_author_email
_software.language
_software.location
_software.name
_software.type
_software.version
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2010-06-29
REL
REL
GOL
GLYCEROL
PG4
TETRAETHYLENE GLYCOL
NA
SODIUM ION
HOH
water
THIS CONSTRUCT (1-188) WAS EXPRESSED WITH THE PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
GOL
202
2
GOL
GOL
202
A
GOL
203
2
GOL
GOL
203
A
PG4
204
3
PG4
PG4
204
A
PG4
206
3
PG4
PG4
206
A
PG4
207
3
PG4
PG4
207
A
NA
201
4
NA
NA
201
B
PG4
205
3
PG4
PG4
205
B
PG4
208
3
PG4
PG4
208
B
HOH
209
5
HOH
HOH
209
A
HOH
210
5
HOH
HOH
210
A
HOH
212
5
HOH
HOH
212
A
HOH
214
5
HOH
HOH
214
A
HOH
218
5
HOH
HOH
218
A
HOH
219
5
HOH
HOH
219
A
HOH
220
5
HOH
HOH
220
A
HOH
224
5
HOH
HOH
224
A
HOH
225
5
HOH
HOH
225
A
HOH
227
5
HOH
HOH
227
A
HOH
228
5
HOH
HOH
228
A
HOH
229
5
HOH
HOH
229
A
HOH
230
5
HOH
HOH
230
A
HOH
233
5
HOH
HOH
233
A
HOH
234
5
HOH
HOH
234
A
HOH
235
5
HOH
HOH
235
A
HOH
237
5
HOH
HOH
237
A
HOH
238
5
HOH
HOH
238
A
HOH
240
5
HOH
HOH
240
A
HOH
243
5
HOH
HOH
243
A
HOH
245
5
HOH
HOH
245
A
HOH
246
5
HOH
HOH
246
A
HOH
247
5
HOH
HOH
247
A
HOH
248
5
HOH
HOH
248
A
HOH
249
5
HOH
HOH
249
A
HOH
251
5
HOH
HOH
251
A
HOH
252
5
HOH
HOH
252
A
HOH
257
5
HOH
HOH
257
A
HOH
260
5
HOH
HOH
260
A
HOH
261
5
HOH
HOH
261
A
HOH
268
5
HOH
HOH
268
A
HOH
269
5
HOH
HOH
269
A
HOH
271
5
HOH
HOH
271
A
HOH
211
5
HOH
HOH
211
B
HOH
213
5
HOH
HOH
213
B
HOH
215
5
HOH
HOH
215
B
HOH
216
5
HOH
HOH
216
B
HOH
217
5
HOH
HOH
217
B
HOH
221
5
HOH
HOH
221
B
HOH
222
5
HOH
HOH
222
B
HOH
223
5
HOH
HOH
223
B
HOH
226
5
HOH
HOH
226
B
HOH
231
5
HOH
HOH
231
B
HOH
232
5
HOH
HOH
232
B
HOH
236
5
HOH
HOH
236
B
HOH
239
5
HOH
HOH
239
B
HOH
241
5
HOH
HOH
241
B
HOH
242
5
HOH
HOH
242
B
HOH
244
5
HOH
HOH
244
B
HOH
250
5
HOH
HOH
250
B
HOH
253
5
HOH
HOH
253
B
HOH
254
5
HOH
HOH
254
B
HOH
255
5
HOH
HOH
255
B
HOH
256
5
HOH
HOH
256
B
HOH
258
5
HOH
HOH
258
B
HOH
259
5
HOH
HOH
259
B
HOH
262
5
HOH
HOH
262
B
HOH
263
5
HOH
HOH
263
B
HOH
264
5
HOH
HOH
264
B
HOH
265
5
HOH
HOH
265
B
HOH
266
5
HOH
HOH
266
B
HOH
267
5
HOH
HOH
267
B
HOH
270
5
HOH
HOH
270
B
n
1
0
A
n
2
1
A
ASP
2
n
3
ASP
2
A
TYR
3
n
4
TYR
3
A
SER
4
n
5
SER
4
A
ASN
5
n
6
ASN
5
A
GLU
6
n
7
GLU
6
A
LEU
7
n
8
LEU
7
A
LYS
8
n
9
LYS
8
A
GLU
9
n
10
GLU
9
A
LEU
10
n
11
LEU
10
A
PHE
11
n
12
PHE
11
A
LEU
12
n
13
LEU
12
A
MSE
13
n
14
MSE
13
A
ASN
14
n
15
ASN
14
A
GLN
15
n
16
GLN
15
A
THR
16
n
17
THR
16
A
TYR
17
n
18
TYR
17
A
ALA
18
n
19
ALA
18
A
THR
19
n
20
THR
19
A
LEU
20
n
21
LEU
20
A
PHE
21
n
22
PHE
21
A
THR
22
n
23
THR
22
A
LEU
23
n
24
LEU
23
A
THR
24
n
25
THR
24
A
ASN
25
n
26
ASN
25
A
LYS
26
n
27
LYS
26
A
ILE
27
n
28
ILE
27
A
GLN
28
n
29
GLN
28
A
ILE
29
n
30
ILE
29
A
GLU
30
n
31
GLU
30
A
GLY
31
n
32
GLY
31
A
ASP
32
n
33
ASP
32
A
LYS
33
n
34
LYS
33
A
TYR
34
n
35
TYR
34
A
PHE
35
n
36
PHE
35
A
GLY
36
n
37
GLY
36
A
ILE
37
n
38
ILE
37
A
LEU
38
n
39
LEU
38
A
THR
39
n
40
THR
39
A
SER
40
n
41
SER
40
A
ARG
41
n
42
ARG
41
A
GLN
42
n
43
GLN
42
A
TYR
43
n
44
TYR
43
A
MSE
44
n
45
MSE
44
A
THR
45
n
46
THR
45
A
ILE
46
n
47
ILE
46
A
LEU
47
n
48
LEU
47
A
SER
48
n
49
SER
48
A
ILE
49
n
50
ILE
49
A
LEU
50
n
51
LEU
50
A
HIS
51
n
52
HIS
51
A
LEU
52
n
53
LEU
52
A
PRO
53
n
54
PRO
53
A
GLU
54
n
55
GLU
54
A
GLU
55
n
56
GLU
55
A
GLU
56
n
57
GLU
56
A
THR
57
n
58
THR
57
A
THR
58
n
59
THR
58
A
LEU
59
n
60
LEU
59
A
ASN
60
n
61
ASN
60
A
ASN
61
n
62
ASN
61
A
ILE
62
n
63
ILE
62
A
ALA
63
n
64
ALA
63
A
ARG
64
n
65
ARG
64
A
LYS
65
n
66
LYS
65
A
MSE
66
n
67
MSE
66
A
GLY
67
n
68
GLY
67
A
THR
68
n
69
THR
68
A
SER
69
n
70
SER
69
A
LYS
70
n
71
LYS
70
A
GLN
71
n
72
GLN
71
A
ASN
72
n
73
ASN
72
A
ILE
73
n
74
ILE
73
A
ASN
74
n
75
ASN
74
A
ARG
75
n
76
ARG
75
A
LEU
76
n
77
LEU
76
A
VAL
77
n
78
VAL
77
A
ALA
78
n
79
ALA
78
A
ASN
79
n
80
ASN
79
A
LEU
80
n
81
LEU
80
A
GLU
81
n
82
GLU
81
A
LYS
82
n
83
LYS
82
A
ASN
83
n
84
ASN
83
A
GLY
84
n
85
GLY
84
A
TYR
85
n
86
TYR
85
A
VAL
86
n
87
VAL
86
A
ASP
87
n
88
ASP
87
A
VAL
88
n
89
VAL
88
A
ILE
89
n
90
ILE
89
A
PRO
90
n
91
PRO
90
A
SER
91
n
92
SER
91
A
PRO
92
n
93
PRO
92
A
HIS
93
n
94
HIS
93
A
ASP
94
n
95
ASP
94
A
LYS
95
n
96
LYS
95
A
ARG
96
n
97
ARG
96
A
ALA
97
n
98
ALA
97
A
ILE
98
n
99
ILE
98
A
ASN
99
n
100
ASN
99
A
VAL
100
n
101
VAL
100
A
LYS
101
n
102
LYS
101
A
VAL
102
n
103
VAL
102
A
THR
103
n
104
THR
103
A
ASP
104
n
105
ASP
104
A
LEU
105
n
106
LEU
105
A
GLY
106
n
107
GLY
106
A
LYS
107
n
108
LYS
107
A
LYS
108
n
109
LYS
108
A
VAL
109
n
110
VAL
109
A
MSE
110
n
111
MSE
110
A
VAL
111
n
112
VAL
111
A
THR
112
n
113
THR
112
A
CYS
113
n
114
CYS
113
A
SER
114
n
115
SER
114
A
ARG
115
n
116
ARG
115
A
THR
116
n
117
THR
116
A
GLY
117
n
118
GLY
117
A
ILE
118
n
119
ILE
118
A
ASN
119
n
120
ASN
119
A
PHE
120
n
121
PHE
120
A
MSE
121
n
122
MSE
121
A
ALA
122
n
123
ALA
122
A
ASP
123
n
124
ASP
123
A
VAL
124
n
125
VAL
124
A
PHE
125
n
126
PHE
125
A
HIS
126
n
127
HIS
126
A
GLU
127
n
128
GLU
127
A
PHE
128
n
129
PHE
128
A
THR
129
n
130
THR
129
A
LYS
130
n
131
LYS
130
A
ASP
131
n
132
ASP
131
A
GLU
132
n
133
GLU
132
A
LEU
133
n
134
LEU
133
A
GLU
134
n
135
GLU
134
A
THR
135
n
136
THR
135
A
LEU
136
n
137
LEU
136
A
TRP
137
n
138
TRP
137
A
SER
138
n
139
SER
138
A
LEU
139
n
140
LEU
139
A
LEU
140
n
141
LEU
140
A
LYS
141
n
142
LYS
141
A
LYS
142
n
143
LYS
142
A
MSE
143
n
144
MSE
143
A
TYR
144
n
145
TYR
144
A
ARG
145
n
146
ARG
145
A
PHE
146
n
147
PHE
146
A
ASN
147
n
148
ASN
147
A
GLY
148
n
149
GLY
148
A
GLU
149
n
150
GLU
149
A
GLU
150
n
151
GLU
150
A
GLN
151
n
152
GLN
151
A
ASP
152
n
153
ASP
152
A
GLY
153
n
154
GLY
153
A
PHE
154
n
155
PHE
154
A
GLU
155
n
156
GLU
155
A
GLU
156
n
157
GLU
156
A
ASP
157
n
158
ASP
157
A
ALA
158
n
159
ALA
158
A
ASN
159
n
160
ASN
159
A
n
161
160
A
n
162
161
A
n
163
162
A
n
164
163
A
n
165
164
A
GLU
165
n
166
GLU
165
A
ILE
166
n
167
ILE
166
A
ASP
167
n
168
ASP
167
A
LYS
168
n
169
LYS
168
A
ILE
169
n
170
ILE
169
A
LYS
170
n
171
LYS
170
A
SER
171
n
172
SER
171
A
GLU
172
n
173
GLU
172
A
ALA
173
n
174
ALA
173
A
LEU
174
n
175
LEU
174
A
GLU
175
n
176
GLU
175
A
GLU
176
n
177
GLU
176
A
PHE
177
n
178
PHE
177
A
ALA
178
n
179
ALA
178
A
LYS
179
n
180
LYS
179
A
ARG
180
n
181
ARG
180
A
ARG
181
n
182
ARG
181
A
ASN
182
n
183
ASN
182
A
ARG
183
n
184
ARG
183
A
VAL
184
n
185
VAL
184
A
ASN
185
n
186
ASN
185
A
LYS
186
n
187
LYS
186
A
ASN
187
n
188
ASN
187
A
ASP
188
n
189
ASP
188
A
n
1
0
B
n
2
1
B
n
3
2
B
TYR
3
n
4
TYR
3
B
SER
4
n
5
SER
4
B
ASN
5
n
6
ASN
5
B
GLU
6
n
7
GLU
6
B
LEU
7
n
8
LEU
7
B
LYS
8
n
9
LYS
8
B
GLU
9
n
10
GLU
9
B
LEU
10
n
11
LEU
10
B
PHE
11
n
12
PHE
11
B
LEU
12
n
13
LEU
12
B
MSE
13
n
14
MSE
13
B
ASN
14
n
15
ASN
14
B
GLN
15
n
16
GLN
15
B
THR
16
n
17
THR
16
B
TYR
17
n
18
TYR
17
B
ALA
18
n
19
ALA
18
B
THR
19
n
20
THR
19
B
LEU
20
n
21
LEU
20
B
PHE
21
n
22
PHE
21
B
THR
22
n
23
THR
22
B
LEU
23
n
24
LEU
23
B
THR
24
n
25
THR
24
B
ASN
25
n
26
ASN
25
B
LYS
26
n
27
LYS
26
B
ILE
27
n
28
ILE
27
B
GLN
28
n
29
GLN
28
B
ILE
29
n
30
ILE
29
B
GLU
30
n
31
GLU
30
B
GLY
31
n
32
GLY
31
B
ASP
32
n
33
ASP
32
B
LYS
33
n
34
LYS
33
B
TYR
34
n
35
TYR
34
B
PHE
35
n
36
PHE
35
B
GLY
36
n
37
GLY
36
B
ILE
37
n
38
ILE
37
B
LEU
38
n
39
LEU
38
B
THR
39
n
40
THR
39
B
SER
40
n
41
SER
40
B
ARG
41
n
42
ARG
41
B
GLN
42
n
43
GLN
42
B
TYR
43
n
44
TYR
43
B
MSE
44
n
45
MSE
44
B
THR
45
n
46
THR
45
B
ILE
46
n
47
ILE
46
B
LEU
47
n
48
LEU
47
B
SER
48
n
49
SER
48
B
ILE
49
n
50
ILE
49
B
LEU
50
n
51
LEU
50
B
HIS
51
n
52
HIS
51
B
LEU
52
n
53
LEU
52
B
PRO
53
n
54
PRO
53
B
GLU
54
n
55
GLU
54
B
GLU
55
n
56
GLU
55
B
GLU
56
n
57
GLU
56
B
THR
57
n
58
THR
57
B
THR
58
n
59
THR
58
B
LEU
59
n
60
LEU
59
B
ASN
60
n
61
ASN
60
B
ASN
61
n
62
ASN
61
B
ILE
62
n
63
ILE
62
B
ALA
63
n
64
ALA
63
B
ARG
64
n
65
ARG
64
B
LYS
65
n
66
LYS
65
B
MSE
66
n
67
MSE
66
B
GLY
67
n
68
GLY
67
B
THR
68
n
69
THR
68
B
SER
69
n
70
SER
69
B
LYS
70
n
71
LYS
70
B
GLN
71
n
72
GLN
71
B
ASN
72
n
73
ASN
72
B
ILE
73
n
74
ILE
73
B
ASN
74
n
75
ASN
74
B
ARG
75
n
76
ARG
75
B
LEU
76
n
77
LEU
76
B
VAL
77
n
78
VAL
77
B
ALA
78
n
79
ALA
78
B
ASN
79
n
80
ASN
79
B
LEU
80
n
81
LEU
80
B
GLU
81
n
82
GLU
81
B
LYS
82
n
83
LYS
82
B
ASN
83
n
84
ASN
83
B
GLY
84
n
85
GLY
84
B
TYR
85
n
86
TYR
85
B
VAL
86
n
87
VAL
86
B
ASP
87
n
88
ASP
87
B
VAL
88
n
89
VAL
88
B
ILE
89
n
90
ILE
89
B
PRO
90
n
91
PRO
90
B
SER
91
n
92
SER
91
B
PRO
92
n
93
PRO
92
B
HIS
93
n
94
HIS
93
B
ASP
94
n
95
ASP
94
B
LYS
95
n
96
LYS
95
B
ARG
96
n
97
ARG
96
B
ALA
97
n
98
ALA
97
B
ILE
98
n
99
ILE
98
B
ASN
99
n
100
ASN
99
B
VAL
100
n
101
VAL
100
B
LYS
101
n
102
LYS
101
B
VAL
102
n
103
VAL
102
B
THR
103
n
104
THR
103
B
ASP
104
n
105
ASP
104
B
LEU
105
n
106
LEU
105
B
GLY
106
n
107
GLY
106
B
LYS
107
n
108
LYS
107
B
LYS
108
n
109
LYS
108
B
VAL
109
n
110
VAL
109
B
MSE
110
n
111
MSE
110
B
VAL
111
n
112
VAL
111
B
THR
112
n
113
THR
112
B
CYS
113
n
114
CYS
113
B
SER
114
n
115
SER
114
B
ARG
115
n
116
ARG
115
B
THR
116
n
117
THR
116
B
GLY
117
n
118
GLY
117
B
ILE
118
n
119
ILE
118
B
ASN
119
n
120
ASN
119
B
PHE
120
n
121
PHE
120
B
MSE
121
n
122
MSE
121
B
ALA
122
n
123
ALA
122
B
ASP
123
n
124
ASP
123
B
VAL
124
n
125
VAL
124
B
PHE
125
n
126
PHE
125
B
HIS
126
n
127
HIS
126
B
GLU
127
n
128
GLU
127
B
PHE
128
n
129
PHE
128
B
THR
129
n
130
THR
129
B
LYS
130
n
131
LYS
130
B
ASP
131
n
132
ASP
131
B
GLU
132
n
133
GLU
132
B
LEU
133
n
134
LEU
133
B
GLU
134
n
135
GLU
134
B
THR
135
n
136
THR
135
B
LEU
136
n
137
LEU
136
B
TRP
137
n
138
TRP
137
B
SER
138
n
139
SER
138
B
LEU
139
n
140
LEU
139
B
LEU
140
n
141
LEU
140
B
LYS
141
n
142
LYS
141
B
LYS
142
n
143
LYS
142
B
MSE
143
n
144
MSE
143
B
TYR
144
n
145
TYR
144
B
ARG
145
n
146
ARG
145
B
PHE
146
n
147
PHE
146
B
ASN
147
n
148
ASN
147
B
GLY
148
n
149
GLY
148
B
GLU
149
n
150
GLU
149
B
GLU
150
n
151
GLU
150
B
GLN
151
n
152
GLN
151
B
ASP
152
n
153
ASP
152
B
GLY
153
n
154
GLY
153
B
PHE
154
n
155
PHE
154
B
n
156
155
B
n
157
156
B
n
158
157
B
n
159
158
B
n
160
159
B
n
161
160
B
n
162
161
B
n
163
162
B
n
164
163
B
GLU
164
n
165
GLU
164
B
GLU
165
n
166
GLU
165
B
ILE
166
n
167
ILE
166
B
ASP
167
n
168
ASP
167
B
LYS
168
n
169
LYS
168
B
ILE
169
n
170
ILE
169
B
LYS
170
n
171
LYS
170
B
SER
171
n
172
SER
171
B
GLU
172
n
173
GLU
172
B
ALA
173
n
174
ALA
173
B
LEU
174
n
175
LEU
174
B
GLU
175
n
176
GLU
175
B
GLU
176
n
177
GLU
176
B
PHE
177
n
178
PHE
177
B
ALA
178
n
179
ALA
178
B
LYS
179
n
180
LYS
179
B
ARG
180
n
181
ARG
180
B
ARG
181
n
182
ARG
181
B
ASN
182
n
183
ASN
182
B
ARG
183
n
184
ARG
183
B
VAL
184
n
185
VAL
184
B
ASN
185
n
186
ASN
185
B
LYS
186
n
187
LYS
186
B
ASN
187
n
188
ASN
187
B
ASP
188
n
189
ASP
188
B
14.6154
7.7251
0.1945
13.6158
-2.8218
10.6187
-0.0082
0.1067
-0.6413
0.1362
-0.2673
-1.4418
0.0953
0.8756
0.2756
0.0832
0.0032
-0.0157
0.1169
0.0608
0.1970
refined
92.4360
35.6480
53.6870
X-RAY DIFFRACTION
4.0850
2.0945
-0.9487
3.8109
-0.7967
1.2877
0.0355
0.1326
0.7952
-0.0093
0.2172
1.0556
-0.2105
-0.3201
-0.2526
0.1319
0.0262
-0.0440
0.1126
0.0849
0.3510
refined
56.7520
30.0360
61.4920
X-RAY DIFFRACTION
1.9534
0.5914
0.2436
4.0224
-0.4991
1.4330
0.1473
-0.2441
-0.0200
0.3270
-0.0759
-0.1160
-0.0735
0.0143
-0.0714
0.1402
-0.0336
0.0131
0.0696
-0.0041
0.0528
refined
74.4060
27.1320
69.2550
X-RAY DIFFRACTION
6.5831
14.6446
-11.8299
39.1131
-21.9872
15.3623
1.0037
0.1359
0.7188
2.5543
0.0886
2.1444
-1.4940
-0.3622
-1.0923
0.5251
-0.1282
0.3087
0.2447
-0.0774
0.5249
refined
62.1310
29.3560
77.2660
X-RAY DIFFRACTION
5.5674
0.8967
-1.3250
13.3071
1.8632
12.4146
-0.0462
-0.2171
-0.8834
0.6128
-0.3687
-0.0283
0.7824
0.3804
0.4148
0.1930
-0.0123
-0.0003
0.1116
0.0736
0.1812
refined
67.7430
9.5930
76.0800
X-RAY DIFFRACTION
1.0592
0.4852
-0.4238
1.5990
-0.6784
3.5490
0.0502
0.0437
-0.0411
0.0775
0.0840
0.1547
-0.0036
-0.0726
-0.1342
0.0760
-0.0062
-0.0435
0.0474
0.0043
0.1230
refined
71.8890
30.3430
58.3850
X-RAY DIFFRACTION
1.7882
1.5535
0.8048
3.0395
0.5514
4.5275
-0.0434
0.3463
-0.3120
-0.3720
0.1542
-0.0152
0.6075
-0.0527
-0.1108
0.1923
-0.0026
-0.0493
0.1001
-0.0811
0.1148
refined
75.8810
26.4360
40.1360
X-RAY DIFFRACTION
4.5448
2.3927
-0.1783
8.0120
-0.2732
2.3579
0.0127
0.0622
-0.2876
0.4876
-0.0207
-0.4864
0.1139
0.2032
0.0080
0.1028
-0.0041
-0.0170
0.1076
0.0349
0.0742
refined
83.1380
26.2860
63.5350
X-RAY DIFFRACTION
11.4015
19.8538
-9.4729
31.2190
-14.7239
7.6399
-1.4482
-0.0130
-1.0711
-2.9046
0.0779
-1.4623
1.5211
0.5185
1.3703
0.7310
0.0483
0.1627
0.2711
0.1065
0.5978
refined
87.2140
29.1590
48.4400
X-RAY DIFFRACTION
6.3823
-2.2564
-1.5489
10.0342
0.6947
2.9938
0.0656
-0.3697
0.3637
0.5481
-0.1558
-0.2481
-0.4482
0.2123
0.0901
0.1928
-0.0706
-0.0270
0.0941
-0.0207
0.0700
refined
88.0890
48.6840
56.0240
X-RAY DIFFRACTION
A
2
A
15
X-RAY DIFFRACTION
1
A
16
A
115
X-RAY DIFFRACTION
2
A
116
A
149
X-RAY DIFFRACTION
3
A
150
A
168
X-RAY DIFFRACTION
4
A
169
A
188
X-RAY DIFFRACTION
5
B
3
B
52
X-RAY DIFFRACTION
6
B
53
B
126
X-RAY DIFFRACTION
7
B
127
B
147
X-RAY DIFFRACTION
8
B
148
B
172
X-RAY DIFFRACTION
9
B
173
B
188
X-RAY DIFFRACTION
10
author_and_software_defined_assembly
PISA
2
dimeric
gel filtration
light scattering
10100
-69
17750
A
PG4
207
G
O4
PG4
1_555
B
NA
201
H
NA
NA
1_555
A
PG4
207
G
O5
PG4
1_555
59.4
A
MSE
13
SELENOMETHIONINE
A
MSE
14
MET
A
MSE
44
SELENOMETHIONINE
A
MSE
45
MET
A
MSE
66
SELENOMETHIONINE
A
MSE
67
MET
A
MSE
110
SELENOMETHIONINE
A
MSE
111
MET
A
MSE
121
SELENOMETHIONINE
A
MSE
122
MET
A
MSE
143
SELENOMETHIONINE
A
MSE
144
MET
B
MSE
13
SELENOMETHIONINE
B
MSE
14
MET
B
MSE
44
SELENOMETHIONINE
B
MSE
45
MET
B
MSE
66
SELENOMETHIONINE
B
MSE
67
MET
B
MSE
110
SELENOMETHIONINE
B
MSE
111
MET
B
MSE
121
SELENOMETHIONINE
B
MSE
122
MET
B
MSE
143
SELENOMETHIONINE
B
MSE
144
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASP
87
A
N
ASP
88
A
O
LYS
101
A
O
LYS
102
B
N
ASP
87
B
N
ASP
88
B
O
LYS
101
B
O
LYS
102
1
A
CG
ASP
2
A
CG
ASP
3
1
Y
1
A
OD1
ASP
2
A
OD1
ASP
3
1
Y
1
A
OD2
ASP
2
A
OD2
ASP
3
1
Y
1
A
CZ
ARG
41
A
CZ
ARG
42
1
Y
1
A
NH1
ARG
41
A
NH1
ARG
42
1
Y
1
A
NH2
ARG
41
A
NH2
ARG
42
1
Y
1
A
CG
GLU
54
A
CG
GLU
55
1
Y
1
A
CD
GLU
54
A
CD
GLU
55
1
Y
1
A
OE1
GLU
54
A
OE1
GLU
55
1
Y
1
A
OE2
GLU
54
A
OE2
GLU
55
1
Y
1
A
CD
GLU
55
A
CD
GLU
56
1
Y
1
A
OE1
GLU
55
A
OE1
GLU
56
1
Y
1
A
OE2
GLU
55
A
OE2
GLU
56
1
Y
1
A
CD
ARG
64
A
CD
ARG
65
1
Y
1
A
NE
ARG
64
A
NE
ARG
65
1
Y
1
A
CZ
ARG
64
A
CZ
ARG
65
1
Y
1
A
NH1
ARG
64
A
NH1
ARG
65
1
Y
1
A
NH2
ARG
64
A
NH2
ARG
65
1
Y
1
A
CE
LYS
70
A
CE
LYS
71
1
Y
1
A
NZ
LYS
70
A
NZ
LYS
71
1
Y
1
A
CD
GLN
71
A
CD
GLN
72
1
Y
1
A
OE1
GLN
71
A
OE1
GLN
72
1
Y
1
A
NE2
GLN
71
A
NE2
GLN
72
1
Y
1
A
CG
ARG
75
A
CG
ARG
76
1
Y
1
A
CD
ARG
75
A
CD
ARG
76
1
Y
1
A
NE
ARG
75
A
NE
ARG
76
1
Y
1
A
CZ
ARG
75
A
CZ
ARG
76
1
Y
1
A
NH1
ARG
75
A
NH1
ARG
76
1
Y
1
A
NH2
ARG
75
A
NH2
ARG
76
1
Y
1
A
CD
LYS
82
A
CD
LYS
83
1
Y
1
A
CE
LYS
82
A
CE
LYS
83
1
Y
1
A
NZ
LYS
82
A
NZ
LYS
83
1
Y
1
A
CG
LYS
95
A
CG
LYS
96
1
Y
1
A
CD
LYS
95
A
CD
LYS
96
1
Y
1
A
CE
LYS
95
A
CE
LYS
96
1
Y
1
A
NZ
LYS
95
A
NZ
LYS
96
1
Y
1
A
CG
ARG
96
A
CG
ARG
97
1
Y
1
A
CD
ARG
96
A
CD
ARG
97
1
Y
1
A
NE
ARG
96
A
NE
ARG
97
1
Y
1
A
CZ
ARG
96
A
CZ
ARG
97
1
Y
1
A
NH1
ARG
96
A
NH1
ARG
97
1
Y
1
A
NH2
ARG
96
A
NH2
ARG
97
1
Y
1
A
CG
LYS
101
A
CG
LYS
102
1
Y
1
A
CD
LYS
101
A
CD
LYS
102
1
Y
1
A
CE
LYS
101
A
CE
LYS
102
1
Y
1
A
NZ
LYS
101
A
NZ
LYS
102
1
Y
1
A
OD1
ASP
104
A
OD1
ASP
105
1
Y
1
A
OD2
ASP
104
A
OD2
ASP
105
1
Y
1
A
CD
GLU
149
A
CD
GLU
150
1
Y
1
A
OE1
GLU
149
A
OE1
GLU
150
1
Y
1
A
OE2
GLU
149
A
OE2
GLU
150
1
Y
1
A
CG
GLU
156
A
CG
GLU
157
1
Y
1
A
CD
GLU
156
A
CD
GLU
157
1
Y
1
A
OE1
GLU
156
A
OE1
GLU
157
1
Y
1
A
OE2
GLU
156
A
OE2
GLU
157
1
Y
1
A
CG
ASN
159
A
CG
ASN
160
1
Y
1
A
OD1
ASN
159
A
OD1
ASN
160
1
Y
1
A
ND2
ASN
159
A
ND2
ASN
160
1
Y
1
A
CD
LYS
170
A
CD
LYS
171
1
Y
1
A
CE
LYS
170
A
CE
LYS
171
1
Y
1
A
NZ
LYS
170
A
NZ
LYS
171
1
Y
1
A
CG
LYS
186
A
CG
LYS
187
1
Y
1
A
CD
LYS
186
A
CD
LYS
187
1
Y
1
A
CE
LYS
186
A
CE
LYS
187
1
Y
1
A
NZ
LYS
186
A
NZ
LYS
187
1
Y
1
B
OD1
ASN
5
B
OD1
ASN
6
1
Y
1
B
ND2
ASN
5
B
ND2
ASN
6
1
Y
1
B
CD
LYS
8
B
CD
LYS
9
1
Y
1
B
CE
LYS
8
B
CE
LYS
9
1
Y
1
B
NZ
LYS
8
B
NZ
LYS
9
1
Y
1
B
CD
ARG
64
B
CD
ARG
65
1
Y
1
B
NE
ARG
64
B
NE
ARG
65
1
Y
1
B
CZ
ARG
64
B
CZ
ARG
65
1
Y
1
B
NH1
ARG
64
B
NH1
ARG
65
1
Y
1
B
NH2
ARG
64
B
NH2
ARG
65
1
Y
1
B
CE
LYS
65
B
CE
LYS
66
1
Y
1
B
NZ
LYS
65
B
NZ
LYS
66
1
Y
1
B
NZ
LYS
70
B
NZ
LYS
71
1
Y
1
B
OE1
GLN
71
B
OE1
GLN
72
1
Y
1
B
NE2
GLN
71
B
NE2
GLN
72
1
Y
1
B
CD
LYS
82
B
CD
LYS
83
1
Y
1
B
CE
LYS
82
B
CE
LYS
83
1
Y
1
B
NZ
LYS
82
B
NZ
LYS
83
1
Y
1
B
CG
LYS
95
B
CG
LYS
96
1
Y
1
B
CD
LYS
95
B
CD
LYS
96
1
Y
1
B
CE
LYS
95
B
CE
LYS
96
1
Y
1
B
NZ
LYS
95
B
NZ
LYS
96
1
Y
1
B
CG
ARG
96
B
CG
ARG
97
1
Y
1
B
CD
ARG
96
B
CD
ARG
97
1
Y
1
B
NE
ARG
96
B
NE
ARG
97
1
Y
1
B
CZ
ARG
96
B
CZ
ARG
97
1
Y
1
B
NH1
ARG
96
B
NH1
ARG
97
1
Y
1
B
NH2
ARG
96
B
NH2
ARG
97
1
Y
1
B
CD
LYS
101
B
CD
LYS
102
1
Y
1
B
CE
LYS
101
B
CE
LYS
102
1
Y
1
B
NZ
LYS
101
B
NZ
LYS
102
1
Y
1
B
CD
LYS
130
B
CD
LYS
131
1
Y
1
B
CE
LYS
130
B
CE
LYS
131
1
Y
1
B
NZ
LYS
130
B
NZ
LYS
131
1
Y
1
B
CD
GLU
149
B
CD
GLU
150
1
Y
1
B
OE1
GLU
149
B
OE1
GLU
150
1
Y
1
B
OE2
GLU
149
B
OE2
GLU
150
1
Y
1
B
OE1
GLU
165
B
OE1
GLU
166
1
Y
1
B
OE2
GLU
165
B
OE2
GLU
166
1
Y
1
B
CG
ASP
167
B
CG
ASP
168
1
Y
1
B
OD1
ASP
167
B
OD1
ASP
168
1
Y
1
B
OD2
ASP
167
B
OD2
ASP
168
1
Y
1
B
CG
LYS
186
B
CG
LYS
187
1
Y
1
B
CD
LYS
186
B
CD
LYS
187
1
Y
1
B
CE
LYS
186
B
CE
LYS
187
1
Y
1
B
NZ
LYS
186
B
NZ
LYS
187
1
Y
1
A
C5
PG4
204
E
C5
PG4
1
1
N
1
A
C6
PG4
204
E
C6
PG4
1
1
N
1
A
O4
PG4
204
E
O4
PG4
1
1
N
1
A
C7
PG4
204
E
C7
PG4
1
1
N
1
A
C8
PG4
204
E
C8
PG4
1
1
N
1
A
O5
PG4
204
E
O5
PG4
1
1
N
1
A
C7
PG4
206
F
C7
PG4
1
1
N
1
A
C8
PG4
206
F
C8
PG4
1
1
N
1
A
O5
PG4
206
F
O5
PG4
1
1
N
1
B
C7
PG4
205
I
C7
PG4
1
1
N
1
B
C8
PG4
205
I
C8
PG4
1
1
N
1
B
O5
PG4
205
I
O5
PG4
1
1
N
1
B
C5
PG4
208
J
C5
PG4
1
1
N
1
B
C6
PG4
208
J
C6
PG4
1
1
N
1
B
O4
PG4
208
J
O4
PG4
1
1
N
1
B
C7
PG4
208
J
C7
PG4
1
1
N
1
B
C8
PG4
208
J
C8
PG4
1
1
N
1
B
O5
PG4
208
J
O5
PG4
1
1
N
1
A
GLY
0
A
GLY
1
1
Y
1
A
MSE
1
A
MSE
2
1
Y
1
A
PHE
160
A
PHE
161
1
Y
1
A
MSE
161
A
MSE
162
1
Y
1
A
GLU
162
A
GLU
163
1
Y
1
A
TYR
163
A
TYR
164
1
Y
1
A
GLU
164
A
GLU
165
1
Y
1
B
GLY
0
B
GLY
1
1
Y
1
B
MSE
1
B
MSE
2
1
Y
1
B
ASP
2
B
ASP
3
1
Y
1
B
GLU
155
B
GLU
156
1
Y
1
B
GLU
156
B
GLU
157
1
Y
1
B
ASP
157
B
ASP
158
1
Y
1
B
ALA
158
B
ALA
159
1
Y
1
B
ASN
159
B
ASN
160
1
Y
1
B
PHE
160
B
PHE
161
1
Y
1
B
MSE
161
B
MSE
162
1
Y
1
B
GLU
162
B
GLU
163
1
Y
1
B
TYR
163
B
TYR
164
1
Y
1
A
A
ASN
LYS
185
186
-146.53
1
A
THR
57
-95.18
51.32
1
A
LYS
186
78.25
30.89
1
B
GLU
165
-171.19
-54.25
138.76
48.924
19.05
0.530
0.000
0.000
-0.820
0.000
0.290
0.950
0.932
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. 3. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 4. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 5. RESIDUES 160-164 OF CHAIN A AND 155-163 OF CHAIN B WERE NOT MODELED DUE TO POOR ELECTRON DENSITY IN THOSE REGIONS. 6. SODIUM (NA) FROM THE PROTEIN BUFFER, AND GLYCEROL (GOL) AND POLYETHYLENE GLYCOL (PG4) FROM THE CRYSTALLIZATION/ CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED INTO THE SOLVENT STRUCTURE. 7. TLS GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD SERVER.
0.237
0.197
0.199
2.200
29.672
1021
20052
5.100
99.510
1.00
0.15
10.926
0.134
RANDOM
1
THROUGHOUT
0.00
SAD
0.287
0.211
0.800
0.800
1.400
MAXIMUM LIKELIHOOD WITH PHASES
MASK
2.200
29.672
63
2947
60
0
2824
0.017
0.022
2969
0.003
0.020
2009
1.314
1.969
3994
1.057
3.000
4933
6.255
5.000
369
37.217
25.324
139
15.153
15.000
535
14.312
15.000
13
0.065
0.200
456
0.006
0.020
3242
0.002
0.020
573
0.755
1.500
1803
0.200
1.500
733
1.422
2.000
2916
2.595
3.000
1166
4.088
4.500
1071
1
A
1
885
X-RAY DIFFRACTION
TIGHT POSITIONAL
0.160
0.050
1
A
1
1017
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.390
0.500
1
A
1
237
X-RAY DIFFRACTION
LOOSE POSITIONAL
1.110
5.000
1
A
1
885
X-RAY DIFFRACTION
TIGHT THERMAL
1.120
0.500
1
A
1
1017
X-RAY DIFFRACTION
MEDIUM THERMAL
1.470
2.000
1
A
1
237
X-RAY DIFFRACTION
LOOSE THERMAL
2.460
10.000
0.281
0.273
2.259
61
1318
1379
20
95.630
42.650
2.20
29.672
3NQO
20101
-3.00
0.059
1
12.610
98.800
0.681
2.20
2.28
1.8
11021
3579
93.10
0.505
2.28
2.37
2.5
11870
3705
99.80
0.381
2.37
2.48
3.3
12421
3868
99.60
0.270
2.48
2.61
4.6
12055
3748
99.60
0.194
2.61
2.77
6.1
11933
3712
99.80
0.135
2.77
2.98
8.6
11959
3712
99.90
0.081
2.98
3.28
13.2
12383
3834
99.70
0.046
3.28
3.76
21.0
12374
3822
99.50
0.029
3.76
4.72
30.6
12082
3743
99.50
0.030
4.72
29.672
33.7
12033
3780
97.80
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0110
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
program
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data reduction
XDS
Crystal structure of a MarR family transcriptional regulator (CD1569) from Clostridium difficile 630 at 2.20 A resolution
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
3
N
N
3
N
N
5
N
N
5
N
N
CRYSTAL PACKING AND SIZE EXCLUSION CHROMATOGRAPHY COUPLED WITH STATIC LIGHT SCATTERING ANALYSES SUPPORT THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.
A
TYR
3
A
TYR
4
HELX_P
A
GLY
36
A
GLY
37
1
1
34
A
THR
39
A
THR
40
HELX_P
A
LEU
52
A
LEU
53
1
2
14
A
PRO
53
A
PRO
54
HELX_P
A
THR
57
A
THR
58
5
3
5
A
THR
58
A
THR
59
HELX_P
A
GLY
67
A
GLY
68
1
4
10
A
SER
69
A
SER
70
HELX_P
A
ASN
83
A
ASN
84
1
5
15
A
THR
103
A
THR
104
HELX_P
A
PHE
125
A
PHE
126
1
6
23
A
THR
129
A
THR
130
HELX_P
A
ARG
145
A
ARG
146
1
7
17
A
PHE
154
A
PHE
155
HELX_P
A
ALA
158
A
ALA
159
5
8
5
A
ASP
167
A
ASP
168
HELX_P
A
ASN
182
A
ASN
183
1
9
16
B
TYR
3
B
TYR
4
HELX_P
B
GLY
36
B
GLY
37
1
10
34
B
THR
39
B
THR
40
HELX_P
B
HIS
51
B
HIS
52
1
11
13
B
PRO
53
B
PRO
54
HELX_P
B
THR
57
B
THR
58
5
12
5
B
THR
58
B
THR
59
HELX_P
B
GLY
67
B
GLY
68
1
13
10
B
SER
69
B
SER
70
HELX_P
B
ASN
83
B
ASN
84
1
14
15
B
THR
103
B
THR
104
HELX_P
B
PHE
125
B
PHE
126
1
15
23
B
THR
129
B
THR
130
HELX_P
B
ARG
145
B
ARG
146
1
16
17
B
LYS
170
B
LYS
171
HELX_P
B
ARG
183
B
ARG
184
1
17
14
covale
1.324
both
A
LEU
12
A
C
LEU
13
1_555
A
MSE
13
A
N
MSE
14
1_555
covale
1.317
both
A
MSE
13
A
C
MSE
14
1_555
A
ASN
14
A
N
ASN
15
1_555
covale
1.332
both
A
TYR
43
A
C
TYR
44
1_555
A
MSE
44
A
N
MSE
45
1_555
covale
1.342
both
A
MSE
44
A
C
MSE
45
1_555
A
THR
45
A
N
THR
46
1_555
covale
1.338
both
A
LYS
65
A
C
LYS
66
1_555
A
MSE
66
A
N
MSE
67
1_555
covale
1.332
both
A
MSE
66
A
C
MSE
67
1_555
A
GLY
67
A
N
GLY
68
1_555
covale
1.341
both
A
VAL
109
A
C
VAL
110
1_555
A
MSE
110
A
N
MSE
111
1_555
covale
1.322
both
A
MSE
110
A
C
MSE
111
1_555
A
VAL
111
A
N
VAL
112
1_555
covale
1.334
both
A
PHE
120
A
C
PHE
121
1_555
A
MSE
121
A
N
MSE
122
1_555
covale
1.335
both
A
MSE
121
A
C
MSE
122
1_555
A
ALA
122
A
N
ALA
123
1_555
covale
1.330
both
A
LYS
142
A
C
LYS
143
1_555
A
MSE
143
A
N
MSE
144
1_555
covale
1.336
both
A
MSE
143
A
C
MSE
144
1_555
A
TYR
144
A
N
TYR
145
1_555
covale
1.333
both
B
LEU
12
B
C
LEU
13
1_555
B
MSE
13
B
N
MSE
14
1_555
covale
1.341
both
B
MSE
13
B
C
MSE
14
1_555
B
ASN
14
B
N
ASN
15
1_555
covale
1.315
both
B
TYR
43
B
C
TYR
44
1_555
B
MSE
44
B
N
MSE
45
1_555
covale
1.335
both
B
MSE
44
B
C
MSE
45
1_555
B
THR
45
B
N
THR
46
1_555
covale
1.336
both
B
LYS
65
B
C
LYS
66
1_555
B
MSE
66
B
N
MSE
67
1_555
covale
1.329
both
B
MSE
66
B
C
MSE
67
1_555
B
GLY
67
B
N
GLY
68
1_555
covale
1.339
both
B
VAL
109
B
C
VAL
110
1_555
B
MSE
110
B
N
MSE
111
1_555
covale
1.341
both
B
MSE
110
B
C
MSE
111
1_555
B
VAL
111
B
N
VAL
112
1_555
covale
1.322
both
B
PHE
120
B
C
PHE
121
1_555
B
MSE
121
B
N
MSE
122
1_555
covale
1.321
both
B
MSE
121
B
C
MSE
122
1_555
B
ALA
122
B
N
ALA
123
1_555
covale
1.317
both
B
LYS
142
B
C
LYS
143
1_555
B
MSE
143
B
N
MSE
144
1_555
covale
1.331
both
B
MSE
143
B
C
MSE
144
1_555
B
TYR
144
B
N
TYR
145
1_555
metalc
2.939
A
PG4
207
G
O4
PG4
1_555
B
NA
201
H
NA
NA
1_555
metalc
2.965
A
PG4
207
G
O5
PG4
1_555
B
NA
201
H
NA
NA
1_555
TRANSCRIPTION
Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, TRANSCRIPTION
A
B
A
3
A
3
4
B
3
B
3
4
A
4
A
164
2
B
4
B
164
2
A
170
A
188
6
B
170
B
188
6
Q186C2_CLOD6
UNP
1
1
Q186C2
MDYSNELKELFLMNQTYATLFTLTNKIQIEGDKYFGILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANL
EKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTGINFMADVFHEFTKDELETLWSLLKKMYRFNGEEQDGFEEDANF
MEYEEIDKIKSEALEEFAKRRNRVNKND
1
188
3NQO
1
188
Q186C2
A
1
2
189
1
188
3NQO
1
188
Q186C2
B
1
2
189
1
expression tag
GLY
0
3NQO
A
Q186C2
UNP
1
2
expression tag
GLY
0
3NQO
B
Q186C2
UNP
1
2
2
anti-parallel
anti-parallel
A
VAL
86
A
VAL
87
A
PRO
90
A
PRO
91
A
ILE
98
A
ILE
99
A
VAL
102
A
VAL
103
B
VAL
86
B
VAL
87
B
PRO
90
B
PRO
91
B
ILE
98
B
ILE
99
B
VAL
102
B
VAL
103
BINDING SITE FOR RESIDUE GOL A 202
A
GOL
202
Software
3
BINDING SITE FOR RESIDUE GOL A 203
A
GOL
203
Software
6
BINDING SITE FOR RESIDUE PG4 A 204
A
PG4
204
Software
2
BINDING SITE FOR RESIDUE PG4 A 206
A
PG4
206
Software
9
BINDING SITE FOR RESIDUE PG4 A 207
A
PG4
207
Software
7
BINDING SITE FOR RESIDUE NA B 201
B
NA
201
Software
2
BINDING SITE FOR RESIDUE PG4 B 205
B
PG4
205
Software
5
BINDING SITE FOR RESIDUE PG4 B 208
B
PG4
208
Software
1
A
TYR
34
A
TYR
35
3
1_555
B
ASN
119
B
ASN
120
3
3_746
B
ARG
180
B
ARG
181
3
3_746
A
LYS
26
A
LYS
27
6
1_555
A
ILE
29
A
ILE
30
6
1_555
A
GLU
30
A
GLU
31
6
1_555
A
HOH
248
K
HOH
6
1_555
B
GLY
67
B
GLY
68
6
1_555
B
ASN
147
B
ASN
148
6
1_555
A
LYS
8
A
LYS
9
2
1_555
A
PHE
11
A
PHE
12
2
1_555
A
ARG
64
A
ARG
65
9
1_555
A
GLY
67
A
GLY
68
9
1_555
A
THR
68
A
THR
69
9
1_555
A
TYR
144
A
TYR
145
9
1_555
A
GLU
150
A
GLU
151
9
1_555
A
HOH
225
K
HOH
9
1_555
B
LYS
26
B
LYS
27
9
1_555
B
ILE
29
B
ILE
30
9
1_555
B
GLU
30
B
GLU
31
9
1_555
A
ASN
14
A
ASN
15
7
1_555
A
GLN
15
A
GLN
16
7
1_555
B
TYR
43
B
TYR
44
7
1_555
B
LEU
47
B
LEU
48
7
1_555
B
SER
114
B
SER
115
7
1_555
B
PHE
154
B
PHE
155
7
1_555
B
NA
201
H
NA
7
1_555
A
PG4
207
G
PG4
2
1_555
B
TYR
43
B
TYR
44
2
1_555
A
TYR
43
A
TYR
44
5
1_555
A
LEU
47
A
LEU
48
5
1_555
A
SER
114
A
SER
115
5
1_555
A
GLY
117
A
GLY
118
5
1_555
B
ASN
14
B
ASN
15
5
1_555
B
SER
114
B
SER
115
1
1_555
19
P 21 21 21