0.015646
0.000000
0.000000
0.000000
0.015646
0.000000
0.000000
0.000000
0.009389
0.00000
0.00000
0.00000
Lubkowski, J.
Li, M.
Gustchina, A.
Zhou, D.
Dauter, Z.
Wlodawer, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
63.915
63.915
106.509
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
K
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
P
N
275
N
O
N
276
N
O
N
277
N
O
N
278
N
O
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
N
301
N
O
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
R
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
N
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
C
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
US
Nat.Struct.Mol.Biol.
1545-9993
18
227
229
10.1038/nsmb.1964
21258323
Crystal structure of XMRV protease differs from the structures of other retropepsins.
2011
10.2210/pdb3nr6/pdb
pdb_00003nr6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
CCD
2010-04-10
MARMOSAIC 300 mm CCD
DOUBLE CRYSTAL SI-220
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
22-ID
APS
1.0
SYNCHROTRON
APS BEAMLINE 22-ID
14345.290
Protease p14
3.4.23.-
2
man
polymer
39.098
POTASSIUM ION
1
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
18.015
water
66
nat
water
no
no
MHHHHHHTLGDQGGQGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGGKRYRWTTDRKVHL
ATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPMGQPLQVL
MHHHHHHTLGDQGGQGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGGKRYRWTTDRKVHL
ATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPMGQPLQVL
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
RETROVIRAL PROTEASE FROM XMRV
pCDNA3.1-XMRV-VP63
sample
gag-pol
373193
Xenotropic MuLV-related virus VP62
469008
Escherichia coli
BL21(DE3)tonA pRARE
PLASMID
pDEST-521
1
1.90
35.11
VAPOR DIFFUSION, HANGING DROP
8.0
PROTEIN CONCENTRATION: 10 MG/ML
PRECIPITANT: 0.06 M KH2PO4, 1.34 M NA2HPO4, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
293.0
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-02-02
1
1
2011-07-13
1
2
2017-11-08
1
3
2023-12-27
1
4
2024-04-03
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
HUMAN IMMUNODEFICIENCY VIRUS 1 (HIV-1) PROTEASE. RELATED RETROVIRAL, ASPARTIC PROTEASE
FELINE IMMUNODEFICIENCY VIRUS (FIV) PROTEASE. RELATED RETROVIRAL, ASPARTIC PROTEASE
EQUINE INFECTIOUS ANEMIA VIRUS (EIAV) PROTEASE. RELATED RETROVIRAL, ASPARTIC PROTEASE
DAMAGE-INDUCIBLE PROTEIN, DDI1. RETROVIRAL PROTEASE-LIKE DOMAIN, RESIDUES 180-325
STRUCTURE OF THE ASPARTIC PROTEASE FROM ROUS SARCOMA RETROVIRUS REFINED AT 2 ANGSTROMS RESOLUTION
RCSB
Y
RCSB
2010-06-30
REL
REL
K
POTASSIUM ION
PO4
PHOSPHATE ION
HOH
water
ASSEMBLY OF RETROVIRAL PROTEASES
Other
in silico model
K
1
2
K
K
126
A
PO4
1
3
PO4
PO4
127
A
HOH
4
4
HOH
HOH
128
A
HOH
6
4
HOH
HOH
129
A
HOH
7
4
HOH
HOH
130
A
HOH
8
4
HOH
HOH
131
A
HOH
9
4
HOH
HOH
132
A
HOH
12
4
HOH
HOH
133
A
HOH
15
4
HOH
HOH
134
A
HOH
16
4
HOH
HOH
135
A
HOH
18
4
HOH
HOH
136
A
HOH
19
4
HOH
HOH
137
A
HOH
21
4
HOH
HOH
138
A
HOH
22
4
HOH
HOH
139
A
HOH
23
4
HOH
HOH
140
A
HOH
24
4
HOH
HOH
141
A
HOH
25
4
HOH
HOH
142
A
HOH
26
4
HOH
HOH
143
A
HOH
27
4
HOH
HOH
144
A
HOH
28
4
HOH
HOH
145
A
HOH
30
4
HOH
HOH
146
A
HOH
31
4
HOH
HOH
147
A
HOH
32
4
HOH
HOH
148
A
HOH
33
4
HOH
HOH
149
A
HOH
35
4
HOH
HOH
150
A
HOH
36
4
HOH
HOH
151
A
HOH
37
4
HOH
HOH
152
A
HOH
46
4
HOH
HOH
153
A
HOH
48
4
HOH
HOH
154
A
HOH
49
4
HOH
HOH
155
A
HOH
50
4
HOH
HOH
156
A
HOH
59
4
HOH
HOH
157
A
HOH
62
4
HOH
HOH
158
A
HOH
63
4
HOH
HOH
159
A
HOH
64
4
HOH
HOH
160
A
HOH
65
4
HOH
HOH
161
A
HOH
66
4
HOH
HOH
162
A
HOH
1
4
HOH
HOH
126
B
HOH
2
4
HOH
HOH
127
B
HOH
3
4
HOH
HOH
128
B
HOH
5
4
HOH
HOH
129
B
HOH
10
4
HOH
HOH
130
B
HOH
11
4
HOH
HOH
131
B
HOH
13
4
HOH
HOH
132
B
HOH
14
4
HOH
HOH
133
B
HOH
17
4
HOH
HOH
134
B
HOH
20
4
HOH
HOH
135
B
HOH
29
4
HOH
HOH
136
B
HOH
34
4
HOH
HOH
137
B
HOH
38
4
HOH
HOH
138
B
HOH
39
4
HOH
HOH
139
B
HOH
40
4
HOH
HOH
140
B
HOH
41
4
HOH
HOH
141
B
HOH
42
4
HOH
HOH
142
B
HOH
43
4
HOH
HOH
143
B
HOH
44
4
HOH
HOH
144
B
HOH
45
4
HOH
HOH
145
B
HOH
47
4
HOH
HOH
146
B
HOH
51
4
HOH
HOH
147
B
HOH
52
4
HOH
HOH
148
B
HOH
53
4
HOH
HOH
149
B
HOH
54
4
HOH
HOH
150
B
HOH
55
4
HOH
HOH
151
B
HOH
56
4
HOH
HOH
152
B
HOH
57
4
HOH
HOH
153
B
HOH
58
4
HOH
HOH
154
B
HOH
60
4
HOH
HOH
155
B
HOH
61
4
HOH
HOH
156
B
n
1
-6
A
n
2
-5
A
n
3
-4
A
n
4
-3
A
n
5
-2
A
n
6
-1
A
n
7
0
A
THR
1
n
8
THR
1
A
LEU
2
n
9
LEU
2
A
GLY
3
n
10
GLY
3
A
ASP
4
n
11
ASP
4
A
GLN
5
n
12
GLN
5
A
GLY
6
n
13
GLY
6
A
GLY
7
n
14
GLY
7
A
GLN
8
n
15
GLN
8
A
GLY
9
n
16
GLY
9
A
GLN
10
n
17
GLN
10
A
GLU
11
n
18
GLU
11
A
PRO
12
n
19
PRO
12
A
PRO
13
n
20
PRO
13
A
PRO
14
n
21
PRO
14
A
GLU
15
n
22
GLU
15
A
PRO
16
n
23
PRO
16
A
ARG
17
n
24
ARG
17
A
ILE
18
n
25
ILE
18
A
THR
19
n
26
THR
19
A
LEU
20
n
27
LEU
20
A
LYS
21
n
28
LYS
21
A
VAL
22
n
29
VAL
22
A
GLY
23
n
30
GLY
23
A
GLY
24
n
31
GLY
24
A
GLN
25
n
32
GLN
25
A
PRO
26
n
33
PRO
26
A
VAL
27
n
34
VAL
27
A
THR
28
n
35
THR
28
A
PHE
29
n
36
PHE
29
A
LEU
30
n
37
LEU
30
A
VAL
31
n
38
VAL
31
A
ASP
32
n
39
ASP
32
A
THR
33
n
40
THR
33
A
GLY
34
n
41
GLY
34
A
ALA
35
n
42
ALA
35
A
GLN
36
n
43
GLN
36
A
HIS
37
n
44
HIS
37
A
SER
38
n
45
SER
38
A
VAL
39
n
46
VAL
39
A
LEU
40
n
47
LEU
40
A
THR
41
n
48
THR
41
A
GLN
42
n
49
GLN
42
A
ASN
43
n
50
ASN
43
A
PRO
44
n
51
PRO
44
A
GLY
45
n
52
GLY
45
A
PRO
46
n
53
PRO
46
A
LEU
47
n
54
LEU
47
A
SER
48
n
55
SER
48
A
ASP
49
n
56
ASP
49
A
LYS
50
n
57
LYS
50
A
SER
51
n
58
SER
51
A
ALA
52
n
59
ALA
52
A
TRP
53
n
60
TRP
53
A
VAL
54
n
61
VAL
54
A
GLN
55
n
62
GLN
55
A
n
63
56
A
n
64
57
A
n
65
58
A
n
66
59
A
GLY
60
n
67
GLY
60
A
LYS
61
n
68
LYS
61
A
ARG
62
n
69
ARG
62
A
TYR
63
n
70
TYR
63
A
ARG
64
n
71
ARG
64
A
TRP
65
n
72
TRP
65
A
THR
66
n
73
THR
66
A
THR
67
n
74
THR
67
A
ASP
68
n
75
ASP
68
A
ARG
69
n
76
ARG
69
A
LYS
70
n
77
LYS
70
A
VAL
71
n
78
VAL
71
A
HIS
72
n
79
HIS
72
A
LEU
73
n
80
LEU
73
A
ALA
74
n
81
ALA
74
A
THR
75
n
82
THR
75
A
GLY
76
n
83
GLY
76
A
LYS
77
n
84
LYS
77
A
VAL
78
n
85
VAL
78
A
THR
79
n
86
THR
79
A
HIS
80
n
87
HIS
80
A
SER
81
n
88
SER
81
A
PHE
82
n
89
PHE
82
A
LEU
83
n
90
LEU
83
A
HIS
84
n
91
HIS
84
A
VAL
85
n
92
VAL
85
A
PRO
86
n
93
PRO
86
A
ASP
87
n
94
ASP
87
A
CYS
88
n
95
CYS
88
A
PRO
89
n
96
PRO
89
A
TYR
90
n
97
TYR
90
A
PRO
91
n
98
PRO
91
A
LEU
92
n
99
LEU
92
A
LEU
93
n
100
LEU
93
A
GLY
94
n
101
GLY
94
A
ARG
95
n
102
ARG
95
A
ASP
96
n
103
ASP
96
A
LEU
97
n
104
LEU
97
A
LEU
98
n
105
LEU
98
A
THR
99
n
106
THR
99
A
LYS
100
n
107
LYS
100
A
LEU
101
n
108
LEU
101
A
LYS
102
n
109
LYS
102
A
ALA
103
n
110
ALA
103
A
GLN
104
n
111
GLN
104
A
ILE
105
n
112
ILE
105
A
HIS
106
n
113
HIS
106
A
PHE
107
n
114
PHE
107
A
GLU
108
n
115
GLU
108
A
GLY
109
n
116
GLY
109
A
SER
110
n
117
SER
110
A
GLY
111
n
118
GLY
111
A
ALA
112
n
119
ALA
112
A
GLN
113
n
120
GLN
113
A
VAL
114
n
121
VAL
114
A
VAL
115
n
122
VAL
115
A
GLY
116
n
123
GLY
116
A
PRO
117
n
124
PRO
117
A
MET
118
n
125
MET
118
A
GLY
119
n
126
GLY
119
A
GLN
120
n
127
GLN
120
A
PRO
121
n
128
PRO
121
A
LEU
122
n
129
LEU
122
A
GLN
123
n
130
GLN
123
A
VAL
124
n
131
VAL
124
A
n
132
125
A
n
1
-6
B
n
2
-5
B
n
3
-4
B
n
4
-3
B
n
5
-2
B
n
6
-1
B
n
7
0
B
THR
1
n
8
THR
1
B
LEU
2
n
9
LEU
2
B
GLY
3
n
10
GLY
3
B
ASP
4
n
11
ASP
4
B
GLN
5
n
12
GLN
5
B
n
13
6
B
n
14
7
B
n
15
8
B
n
16
9
B
n
17
10
B
n
18
11
B
PRO
12
n
19
PRO
12
B
PRO
13
n
20
PRO
13
B
PRO
14
n
21
PRO
14
B
GLU
15
n
22
GLU
15
B
PRO
16
n
23
PRO
16
B
ARG
17
n
24
ARG
17
B
ILE
18
n
25
ILE
18
B
THR
19
n
26
THR
19
B
LEU
20
n
27
LEU
20
B
LYS
21
n
28
LYS
21
B
VAL
22
n
29
VAL
22
B
GLY
23
n
30
GLY
23
B
GLY
24
n
31
GLY
24
B
GLN
25
n
32
GLN
25
B
PRO
26
n
33
PRO
26
B
VAL
27
n
34
VAL
27
B
THR
28
n
35
THR
28
B
PHE
29
n
36
PHE
29
B
LEU
30
n
37
LEU
30
B
VAL
31
n
38
VAL
31
B
ASP
32
n
39
ASP
32
B
THR
33
n
40
THR
33
B
GLY
34
n
41
GLY
34
B
ALA
35
n
42
ALA
35
B
GLN
36
n
43
GLN
36
B
HIS
37
n
44
HIS
37
B
SER
38
n
45
SER
38
B
VAL
39
n
46
VAL
39
B
LEU
40
n
47
LEU
40
B
THR
41
n
48
THR
41
B
GLN
42
n
49
GLN
42
B
ASN
43
n
50
ASN
43
B
PRO
44
n
51
PRO
44
B
GLY
45
n
52
GLY
45
B
PRO
46
n
53
PRO
46
B
LEU
47
n
54
LEU
47
B
SER
48
n
55
SER
48
B
ASP
49
n
56
ASP
49
B
LYS
50
n
57
LYS
50
B
SER
51
n
58
SER
51
B
ALA
52
n
59
ALA
52
B
TRP
53
n
60
TRP
53
B
VAL
54
n
61
VAL
54
B
n
62
55
B
n
63
56
B
n
64
57
B
n
65
58
B
n
66
59
B
GLY
60
n
67
GLY
60
B
LYS
61
n
68
LYS
61
B
ARG
62
n
69
ARG
62
B
TYR
63
n
70
TYR
63
B
ARG
64
n
71
ARG
64
B
TRP
65
n
72
TRP
65
B
THR
66
n
73
THR
66
B
THR
67
n
74
THR
67
B
ASP
68
n
75
ASP
68
B
ARG
69
n
76
ARG
69
B
LYS
70
n
77
LYS
70
B
VAL
71
n
78
VAL
71
B
HIS
72
n
79
HIS
72
B
LEU
73
n
80
LEU
73
B
ALA
74
n
81
ALA
74
B
THR
75
n
82
THR
75
B
GLY
76
n
83
GLY
76
B
LYS
77
n
84
LYS
77
B
VAL
78
n
85
VAL
78
B
THR
79
n
86
THR
79
B
HIS
80
n
87
HIS
80
B
SER
81
n
88
SER
81
B
PHE
82
n
89
PHE
82
B
LEU
83
n
90
LEU
83
B
HIS
84
n
91
HIS
84
B
VAL
85
n
92
VAL
85
B
PRO
86
n
93
PRO
86
B
ASP
87
n
94
ASP
87
B
CYS
88
n
95
CYS
88
B
PRO
89
n
96
PRO
89
B
TYR
90
n
97
TYR
90
B
PRO
91
n
98
PRO
91
B
LEU
92
n
99
LEU
92
B
LEU
93
n
100
LEU
93
B
GLY
94
n
101
GLY
94
B
ARG
95
n
102
ARG
95
B
ASP
96
n
103
ASP
96
B
LEU
97
n
104
LEU
97
B
LEU
98
n
105
LEU
98
B
THR
99
n
106
THR
99
B
LYS
100
n
107
LYS
100
B
LEU
101
n
108
LEU
101
B
LYS
102
n
109
LYS
102
B
ALA
103
n
110
ALA
103
B
GLN
104
n
111
GLN
104
B
ILE
105
n
112
ILE
105
B
HIS
106
n
113
HIS
106
B
PHE
107
n
114
PHE
107
B
GLU
108
n
115
GLU
108
B
GLY
109
n
116
GLY
109
B
SER
110
n
117
SER
110
B
GLY
111
n
118
GLY
111
B
ALA
112
n
119
ALA
112
B
GLN
113
n
120
GLN
113
B
VAL
114
n
121
VAL
114
B
VAL
115
n
122
VAL
115
B
GLY
116
n
123
GLY
116
B
PRO
117
n
124
PRO
117
B
MET
118
n
125
MET
118
B
GLY
119
n
126
GLY
119
B
GLN
120
n
127
GLN
120
B
PRO
121
n
128
PRO
121
B
LEU
122
n
129
LEU
122
B
GLN
123
n
130
GLN
123
B
VAL
124
n
131
VAL
124
B
LEU
125
n
132
LEU
125
B
3.2387
0.4637
-1.4235
4.0084
-0.9411
4.5200
-0.0732
0.0230
-0.1454
-0.0354
0.0143
0.1128
0.1332
-0.1435
0.0589
0.0545
0.0191
-0.0131
0.0701
-0.0094
0.0406
refined
11.1122
21.3554
14.6024
X-RAY DIFFRACTION
6.7048
-1.3269
2.1263
2.9177
0.4850
5.5570
-0.1293
-0.3786
-0.1642
0.2565
0.0793
0.1573
0.0569
-0.2462
0.0499
0.1154
0.0489
0.0362
0.0901
0.0470
0.0480
refined
9.3748
22.8382
38.6955
X-RAY DIFFRACTION
A
1
A
124
X-RAY DIFFRACTION
1
B
1
B
125
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
8
octameric
1960
-13
11290
15020
-57
37980
A
GLN
5
A
O
GLN
12
1_555
A
K
126
C
K
K
1_555
A
GLN
8
A
OE1
GLN
15
1_555
89.3
A
GLN
5
A
O
GLN
12
1_555
A
K
126
C
K
K
1_555
A
PRO
26
A
O
PRO
33
1_555
105.4
A
GLN
8
A
OE1
GLN
15
1_555
A
K
126
C
K
K
1_555
A
PRO
26
A
O
PRO
33
1_555
105.1
A
GLN
5
A
O
GLN
12
1_555
A
K
126
C
K
K
1_555
A
HOH
139
E
O
HOH
1_555
72.0
A
GLN
8
A
OE1
GLN
15
1_555
A
K
126
C
K
K
1_555
A
HOH
139
E
O
HOH
1_555
95.5
A
PRO
26
A
O
PRO
33
1_555
A
K
126
C
K
K
1_555
A
HOH
139
E
O
HOH
1_555
159.2
A
GLN
5
A
O
GLN
12
1_555
A
K
126
C
K
K
1_555
A
HOH
153
E
O
HOH
1_555
159.9
A
GLN
8
A
OE1
GLN
15
1_555
A
K
126
C
K
K
1_555
A
HOH
153
E
O
HOH
1_555
80.5
A
PRO
26
A
O
PRO
33
1_555
A
K
126
C
K
K
1_555
A
HOH
153
E
O
HOH
1_555
94.0
A
HOH
139
E
O
HOH
1_555
A
K
126
C
K
K
1_555
A
HOH
153
E
O
HOH
1_555
91.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
63.9150000000
63.9150000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_655
-y+1,x,z
crystal symmetry operation
63.9150000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_565
y,-x+1,z
crystal symmetry operation
0.0000000000
63.9150000000
0.0000000000
A
O
VAL
78
A
O
VAL
85
A
N
VAL
71
A
N
VAL
78
A
O
HIS
72
A
O
HIS
79
A
N
LYS
21
A
N
LYS
28
A
N
LEU
20
A
N
LEU
27
A
O
VAL
27
A
O
VAL
34
A
N
LEU
30
A
N
LEU
37
A
O
LEU
93
A
O
LEU
100
A
N
LEU
40
A
N
LEU
47
A
O
LEU
83
A
O
LEU
90
A
N
VAL
54
A
N
VAL
61
A
O
LYS
61
A
O
LYS
68
A
O
GLN
113
A
O
GLN
120
A
N
HIS
106
A
N
HIS
113
A
N
ILE
105
A
N
ILE
112
B
O
ILE
105
B
O
ILE
112
B
N
HIS
106
B
N
HIS
113
B
O
GLN
113
B
O
GLN
120
B
O
VAL
78
B
O
VAL
85
B
N
VAL
71
B
N
VAL
78
B
O
HIS
72
B
O
HIS
79
B
N
LYS
21
B
N
LYS
28
B
N
LEU
20
B
N
LEU
27
B
O
VAL
27
B
O
VAL
34
B
N
LEU
30
B
N
LEU
37
B
O
LEU
93
B
O
LEU
100
B
N
LEU
40
B
N
LEU
47
B
O
LEU
83
B
O
LEU
90
B
N
SER
48
B
N
SER
55
B
O
TRP
65
B
O
TRP
72
1
A
MET
-6
A
MET
1
1
Y
1
A
HIS
-5
A
HIS
2
1
Y
1
A
HIS
-4
A
HIS
3
1
Y
1
A
HIS
-3
A
HIS
4
1
Y
1
A
HIS
-2
A
HIS
5
1
Y
1
A
HIS
-1
A
HIS
6
1
Y
1
A
HIS
0
A
HIS
7
1
Y
1
A
GLY
56
A
GLY
63
1
Y
1
A
ALA
57
A
ALA
64
1
Y
1
A
THR
58
A
THR
65
1
Y
1
A
GLY
59
A
GLY
66
1
Y
1
A
LEU
125
A
LEU
132
1
Y
1
B
MET
-6
B
MET
1
1
Y
1
B
HIS
-5
B
HIS
2
1
Y
1
B
HIS
-4
B
HIS
3
1
Y
1
B
HIS
-3
B
HIS
4
1
Y
1
B
HIS
-2
B
HIS
5
1
Y
1
B
HIS
-1
B
HIS
6
1
Y
1
B
HIS
0
B
HIS
7
1
Y
1
B
GLY
6
B
GLY
13
1
Y
1
B
GLY
7
B
GLY
14
1
Y
1
B
GLN
8
B
GLN
15
1
Y
1
B
GLY
9
B
GLY
16
1
Y
1
B
GLN
10
B
GLN
17
1
Y
1
B
GLU
11
B
GLU
18
1
Y
1
B
GLN
55
B
GLN
62
1
Y
1
B
GLY
56
B
GLY
63
1
Y
1
B
ALA
57
B
ALA
64
1
Y
1
B
THR
58
B
THR
65
1
Y
1
B
GLY
59
B
GLY
66
1
Y
1
B
B
O
O
HOH
HOH
136
143
2.11
1
A
A
O
O
HOH
HOH
159
162
2.16
1
B
B
O
O
LEU
HOH
125
139
2.19
1
A
A
O
O
HOH
HOH
137
137
2.19
1_555
2_565
1
A
ASP
87
-76.89
32.07
1
B
ASN
43
29.93
70.26
1
B
ASP
87
-83.29
33.40
1
B
GLU
108
-101.59
-169.98
47.871
0.48
0.00
0.00
0.48
0.00
-0.97
0.958
0.950
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23322
0.19568
0.19737
0.19737
1.97
20.00
815
15336
5.0
98.46
8.324
0.108
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.164
0.80
0.80
1.20
ASSEMBLY OF RETROVIRAL PROTEASES
MAXIMUM LIKELIHOOD
MASK
1.97
20.00
66
1863
6
0
1791
0.020
0.022
1863
1.837
1.975
2538
7.603
5.000
231
35.578
24.211
76
17.844
15.000
302
15.200
15.000
10
0.145
0.200
283
0.010
0.022
1408
2.739
2.000
1168
4.062
3.000
1898
3.676
2.000
695
5.066
3.000
639
0.285
0.224
2.016
60
920
980
20
83.76
37.8
1.97
50.0
3NR6
16141
16141
-1.74
-3
0.044
0.044
1
32.1
4.3
98.5
0.257
1.97
2.00
3.23
667
0.257
2.9
82.1
data collection
MAR345
phasing
PHASER
model building
Rosetta
refinement
REFMAC
5.5.0104
data reduction
HKL-3000
data scaling
HKL-3000
phasing
Rosetta
Crystal structure of xenotropic murine leukemia virus-related virus (XMRV) protease
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
GLY
7
A
GLY
14
HELX_P
A
GLU
11
A
GLU
18
5
1
5
A
GLY
94
A
GLY
101
HELX_P
A
LYS
102
A
LYS
109
1
2
9
B
GLY
94
B
GLY
101
HELX_P
B
LYS
102
B
LYS
109
1
3
9
metalc
2.804
A
GLN
5
A
O
GLN
12
1_555
A
K
126
C
K
K
1_555
metalc
2.804
A
GLN
8
A
OE1
GLN
15
1_555
A
K
126
C
K
K
1_555
metalc
2.952
A
PRO
26
A
O
PRO
33
1_555
A
K
126
C
K
K
1_555
metalc
2.929
A
K
126
C
K
K
1_555
A
HOH
139
E
O
HOH
1_555
metalc
2.575
A
K
126
C
K
K
1_555
A
HOH
153
E
O
HOH
1_555
HYDROLASE/INHIBITOR
DIMER, PROTEASE, HYDROLASE-INHIBITOR complex
A
GLU
15
A
GLU
22
1
A
PRO
16
A
PRO
23
-0.30
B
GLU
15
B
GLU
22
1
B
PRO
16
B
PRO
23
-3.22
B
GLU
15
B
GLU
22
1
B
PRO
16
B
PRO
23
-2.07
POL_XMRV6
UNP
1
533
A1Z651
TLGDQGGQGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGGKRYRWTTDRKVHLATGKVTH
SFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPMGQPLQVL
533
657
3NR6
1
125
A1Z651
A
1
8
132
533
657
3NR6
1
125
A1Z651
B
1
8
132
1
expression tag
MET
-6
3NR6
A
A1Z651
UNP
1
1
expression tag
HIS
-5
3NR6
A
A1Z651
UNP
2
1
expression tag
HIS
-4
3NR6
A
A1Z651
UNP
3
1
expression tag
HIS
-3
3NR6
A
A1Z651
UNP
4
1
expression tag
HIS
-2
3NR6
A
A1Z651
UNP
5
1
expression tag
HIS
-1
3NR6
A
A1Z651
UNP
6
1
expression tag
HIS
0
3NR6
A
A1Z651
UNP
7
2
expression tag
MET
-6
3NR6
B
A1Z651
UNP
1
2
expression tag
HIS
-5
3NR6
B
A1Z651
UNP
2
2
expression tag
HIS
-4
3NR6
B
A1Z651
UNP
3
2
expression tag
HIS
-3
3NR6
B
A1Z651
UNP
4
2
expression tag
HIS
-2
3NR6
B
A1Z651
UNP
5
2
expression tag
HIS
-1
3NR6
B
A1Z651
UNP
6
2
expression tag
HIS
0
3NR6
B
A1Z651
UNP
7
5
2
2
4
5
2
2
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
A
GLY
76
A
GLY
83
A
HIS
80
A
HIS
87
A
ARG
69
A
ARG
76
A
LEU
73
A
LEU
80
A
ARG
17
A
ARG
24
A
VAL
22
A
VAL
29
A
GLN
25
A
GLN
32
A
VAL
31
A
VAL
38
A
LEU
92
A
LEU
99
A
LEU
93
A
LEU
100
A
VAL
39
A
VAL
46
A
LEU
40
A
LEU
47
A
LEU
83
A
LEU
90
A
HIS
84
A
HIS
91
A
LEU
47
A
LEU
54
A
VAL
54
A
VAL
61
A
LYS
61
A
LYS
68
A
THR
66
A
THR
73
A
ALA
112
A
ALA
119
A
VAL
115
A
VAL
122
A
GLN
104
A
GLN
111
A
PHE
107
A
PHE
114
B
GLN
104
B
GLN
111
B
GLU
108
B
GLU
115
B
GLY
111
B
GLY
118
B
VAL
115
B
VAL
122
B
GLY
76
B
GLY
83
B
HIS
80
B
HIS
87
B
ARG
69
B
ARG
76
B
LEU
73
B
LEU
80
B
ARG
17
B
ARG
24
B
VAL
22
B
VAL
29
B
GLN
25
B
GLN
32
B
VAL
31
B
VAL
38
B
LEU
92
B
LEU
99
B
LEU
93
B
LEU
100
B
VAL
39
B
VAL
46
B
LEU
40
B
LEU
47
B
LEU
83
B
LEU
90
B
HIS
84
B
HIS
91
B
LEU
47
B
LEU
54
B
TRP
53
B
TRP
60
B
ARG
62
B
ARG
69
B
THR
66
B
THR
73
BINDING SITE FOR RESIDUE K A 126
A
K
126
Software
5
BINDING SITE FOR RESIDUE PO4 A 127
A
PO4
127
Software
3
A
GLN
5
A
GLN
12
5
1_555
A
GLN
8
A
GLN
15
5
1_555
A
PRO
26
A
PRO
33
5
1_555
A
HOH
139
E
HOH
5
1_555
A
HOH
153
E
HOH
5
1_555
A
GLY
6
A
GLY
13
3
1_555
A
GLY
7
A
GLY
14
3
1_555
A
LYS
50
A
LYS
57
3
3_655
89
P 4 2 2