0.041585 0.000000 0.002449 0.000000 0.017700 0.000000 0.000000 0.000000 0.021386 0.00000 0.00000 0.00000 Zhang, D. LaRonde-LeBlanc, N. Fushman, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 93.37 90.00 24.047 56.498 46.841 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C8 H18 N2 O4 S 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HEPES non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 N C N 76 N C N 77 N N N 78 N C N 79 N C N 80 N C N 81 N C N 82 N O N 83 N C N 84 N C N 85 N S N 86 N O N 87 N O N 88 N O N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 S C N 109 N C N 110 N O N 111 N C N 112 N C N 113 N C N 114 N O N 115 N N N 116 N O N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 S C N 129 N C N 130 N O N 131 N C N 132 N C N 133 N C N 134 N O N 135 N O N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 N C N 148 N C N 149 N O N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N C N 157 N O N 158 N C N 159 N O N 160 N C N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C Y 175 N C Y 176 N N Y 177 N C Y 178 N C Y 179 N N N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N O N 192 N H N 193 N H N 194 N N N 195 S C N 196 N C N 197 N O N 198 S C N 199 N C N 200 N C N 201 N C N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N C N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N N N 239 S C N 240 N C N 241 N O N 242 N C N 243 N C N 244 N C N 245 N C N 246 N N N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N N N 264 S C N 265 N C N 266 N O N 267 N C N 268 N C N 269 N S N 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C Y 288 N C Y 289 N C Y 290 N C Y 291 N C Y 292 N C Y 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 N C N 311 N C N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C N 328 N O N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 R C N 342 N O N 343 N C N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C N 365 N O N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C N 383 N C N 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing Y 173 N sing Y 174 N doub Y 175 N doub N 176 N sing Y 177 N sing N 178 N sing Y 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing Y 281 N doub Y 282 N sing Y 283 N sing N 284 N sing Y 285 N doub N 286 N sing Y 287 N doub N 288 N sing Y 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing Y 350 N doub Y 351 N sing Y 352 N sing N 353 N sing Y 354 N doub N 355 N sing Y 356 N doub N 357 N sing Y 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing NE Biochim.Biophys.Acta BBACAQ 0113 0006-3002 1823 2046 2056 10.1016/j.bbamcr.2012.04.003 22542781 Structural and biochemical studies of the open state of Lys48-linked diubiquitin. 2012 10.2210/pdb3ns8/pdb pdb_00003ns8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2007-06-14 ADSC QUANTUM 315 single crystal Si(111) side bounce monochromator SINGLE WAVELENGTH M x-ray 1 0.97927 1.0 24-ID-E APS 0.97927 SYNCHROTRON APS BEAMLINE 24-ID-E 8576.831 Ubiquitin 2 man polymer 92.094 GLYCEROL 2 syn non-polymer 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID 1 syn non-polymer 18.015 water 120 nat water no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample RPS27A 9606 Homo sapiens 562 Escherichia coli BL21 PLASMID 1 1.85 33.58 VAPOR DIFFUSION, SITTING DROP 7.5 HEPES, PEG 8000, Ethylene Glycol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Database references Database references Data collection Database references Derived calculations Refinement description 1 0 2011-07-20 1 1 2012-10-10 1 2 2012-10-17 1 3 2023-09-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2010-07-01 REL REL GOL GLYCEROL EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HOH water 1UBQ PDB experimental model GOL 1 2 GOL GOL 77 A GOL 2 2 GOL GOL 77 B EPE 3 3 EPE EPE 78 B HOH 78 4 HOH HOH 78 A HOH 3 4 HOH HOH 79 A HOH 4 4 HOH HOH 80 A HOH 81 4 HOH HOH 81 A HOH 8 4 HOH HOH 82 A HOH 10 4 HOH HOH 83 A HOH 11 4 HOH HOH 84 A HOH 85 4 HOH HOH 85 A HOH 86 4 HOH HOH 86 A HOH 87 4 HOH HOH 87 A HOH 88 4 HOH HOH 88 A HOH 13 4 HOH HOH 89 A HOH 90 4 HOH HOH 90 A HOH 91 4 HOH HOH 91 A HOH 92 4 HOH HOH 92 A HOH 93 4 HOH HOH 93 A HOH 14 4 HOH HOH 94 A HOH 15 4 HOH HOH 95 A HOH 17 4 HOH HOH 96 A HOH 19 4 HOH HOH 97 A HOH 98 4 HOH HOH 98 A HOH 20 4 HOH HOH 99 A HOH 100 4 HOH HOH 100 A HOH 21 4 HOH HOH 101 A HOH 102 4 HOH HOH 102 A HOH 23 4 HOH HOH 103 A HOH 24 4 HOH HOH 104 A HOH 25 4 HOH HOH 105 A HOH 27 4 HOH HOH 106 A HOH 107 4 HOH HOH 107 A HOH 29 4 HOH HOH 108 A HOH 109 4 HOH HOH 109 A HOH 110 4 HOH HOH 110 A HOH 111 4 HOH HOH 111 A HOH 112 4 HOH HOH 112 A HOH 31 4 HOH HOH 113 A HOH 32 4 HOH HOH 114 A HOH 115 4 HOH HOH 115 A HOH 116 4 HOH HOH 116 A HOH 117 4 HOH HOH 117 A HOH 118 4 HOH HOH 118 A HOH 34 4 HOH HOH 119 A HOH 120 4 HOH HOH 120 A HOH 121 4 HOH HOH 121 A HOH 122 4 HOH HOH 122 A HOH 123 4 HOH HOH 123 A HOH 124 4 HOH HOH 124 A HOH 35 4 HOH HOH 125 A HOH 38 4 HOH HOH 126 A HOH 40 4 HOH HOH 127 A HOH 42 4 HOH HOH 128 A HOH 47 4 HOH HOH 129 A HOH 49 4 HOH HOH 130 A HOH 50 4 HOH HOH 131 A HOH 51 4 HOH HOH 132 A HOH 55 4 HOH HOH 134 A HOH 56 4 HOH HOH 135 A HOH 58 4 HOH HOH 136 A HOH 60 4 HOH HOH 137 A HOH 63 4 HOH HOH 138 A HOH 64 4 HOH HOH 139 A HOH 65 4 HOH HOH 140 A HOH 66 4 HOH HOH 141 A HOH 67 4 HOH HOH 142 A HOH 69 4 HOH HOH 143 A HOH 70 4 HOH HOH 144 A HOH 71 4 HOH HOH 145 A HOH 72 4 HOH HOH 146 A HOH 73 4 HOH HOH 147 A HOH 76 4 HOH HOH 148 A HOH 79 4 HOH HOH 79 B HOH 80 4 HOH HOH 80 B HOH 1 4 HOH HOH 81 B HOH 82 4 HOH HOH 82 B HOH 83 4 HOH HOH 83 B HOH 2 4 HOH HOH 84 B HOH 5 4 HOH HOH 85 B HOH 6 4 HOH HOH 86 B HOH 7 4 HOH HOH 87 B HOH 9 4 HOH HOH 88 B HOH 12 4 HOH HOH 89 B HOH 16 4 HOH HOH 90 B HOH 18 4 HOH HOH 91 B HOH 22 4 HOH HOH 92 B HOH 26 4 HOH HOH 93 B HOH 94 4 HOH HOH 94 B HOH 95 4 HOH HOH 95 B HOH 96 4 HOH HOH 96 B HOH 28 4 HOH HOH 97 B HOH 33 4 HOH HOH 98 B HOH 99 4 HOH HOH 99 B HOH 36 4 HOH HOH 100 B HOH 101 4 HOH HOH 101 B HOH 37 4 HOH HOH 102 B HOH 39 4 HOH HOH 103 B HOH 41 4 HOH HOH 104 B HOH 105 4 HOH HOH 105 B HOH 106 4 HOH HOH 106 B HOH 43 4 HOH HOH 107 B HOH 108 4 HOH HOH 108 B HOH 44 4 HOH HOH 109 B HOH 46 4 HOH HOH 110 B HOH 48 4 HOH HOH 111 B HOH 52 4 HOH HOH 112 B HOH 113 4 HOH HOH 113 B HOH 114 4 HOH HOH 114 B HOH 54 4 HOH HOH 115 B HOH 57 4 HOH HOH 116 B HOH 59 4 HOH HOH 117 B HOH 61 4 HOH HOH 118 B HOH 119 4 HOH HOH 119 B HOH 62 4 HOH HOH 120 B HOH 68 4 HOH HOH 121 B HOH 74 4 HOH HOH 122 B HOH 75 4 HOH HOH 123 B HOH 77 4 HOH HOH 124 B HOH 126 4 HOH HOH 126 B HOH 127 4 HOH HOH 127 B HOH 128 4 HOH HOH 128 B HOH 53 4 HOH HOH 133 B MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A VAL 5 n 5 VAL 5 A LYS 6 n 6 LYS 6 A THR 7 n 7 THR 7 A LEU 8 n 8 LEU 8 A THR 9 n 9 THR 9 A GLY 10 n 10 GLY 10 A LYS 11 n 11 LYS 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A THR 14 n 14 THR 14 A LEU 15 n 15 LEU 15 A GLU 16 n 16 GLU 16 A VAL 17 n 17 VAL 17 A GLU 18 n 18 GLU 18 A PRO 19 n 19 PRO 19 A SER 20 n 20 SER 20 A ASP 21 n 21 ASP 21 A THR 22 n 22 THR 22 A ILE 23 n 23 ILE 23 A GLU 24 n 24 GLU 24 A ASN 25 n 25 ASN 25 A VAL 26 n 26 VAL 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A LYS 29 n 29 LYS 29 A ILE 30 n 30 ILE 30 A GLN 31 n 31 GLN 31 A ASP 32 n 32 ASP 32 A LYS 33 n 33 LYS 33 A GLU 34 n 34 GLU 34 A GLY 35 n 35 GLY 35 A ILE 36 n 36 ILE 36 A PRO 37 n 37 PRO 37 A PRO 38 n 38 PRO 38 A ASP 39 n 39 ASP 39 A GLN 40 n 40 GLN 40 A GLN 41 n 41 GLN 41 A ARG 42 n 42 ARG 42 A LEU 43 n 43 LEU 43 A ILE 44 n 44 ILE 44 A PHE 45 n 45 PHE 45 A ALA 46 n 46 ALA 46 A GLY 47 n 47 GLY 47 A LYS 48 n 48 LYS 48 A GLN 49 n 49 GLN 49 A LEU 50 n 50 LEU 50 A GLU 51 n 51 GLU 51 A ASP 52 n 52 ASP 52 A GLY 53 n 53 GLY 53 A ARG 54 n 54 ARG 54 A THR 55 n 55 THR 55 A LEU 56 n 56 LEU 56 A SER 57 n 57 SER 57 A ASP 58 n 58 ASP 58 A TYR 59 n 59 TYR 59 A ASN 60 n 60 ASN 60 A ILE 61 n 61 ILE 61 A GLN 62 n 62 GLN 62 A LYS 63 n 63 LYS 63 A GLU 64 n 64 GLU 64 A SER 65 n 65 SER 65 A THR 66 n 66 THR 66 A LEU 67 n 67 LEU 67 A HIS 68 n 68 HIS 68 A LEU 69 n 69 LEU 69 A VAL 70 n 70 VAL 70 A LEU 71 n 71 LEU 71 A ARG 72 n 72 ARG 72 A ALA 73 n 73 LEU 73 A ARG 74 n 74 ARG 74 A GLY 75 n 75 GLY 75 A GLY 76 n 76 GLY 76 A MET 1 n 1 MET 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B PHE 4 n 4 PHE 4 B VAL 5 n 5 VAL 5 B LYS 6 n 6 LYS 6 B THR 7 n 7 THR 7 B LEU 8 n 8 LEU 8 B THR 9 n 9 THR 9 B GLY 10 n 10 GLY 10 B LYS 11 n 11 LYS 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B THR 14 n 14 THR 14 B LEU 15 n 15 LEU 15 B GLU 16 n 16 GLU 16 B VAL 17 n 17 VAL 17 B GLU 18 n 18 GLU 18 B PRO 19 n 19 PRO 19 B SER 20 n 20 SER 20 B ASP 21 n 21 ASP 21 B THR 22 n 22 THR 22 B ILE 23 n 23 ILE 23 B GLU 24 n 24 GLU 24 B ASN 25 n 25 ASN 25 B VAL 26 n 26 VAL 26 B LYS 27 n 27 LYS 27 B ALA 28 n 28 ALA 28 B LYS 29 n 29 LYS 29 B ILE 30 n 30 ILE 30 B GLN 31 n 31 GLN 31 B ASP 32 n 32 ASP 32 B LYS 33 n 33 LYS 33 B GLU 34 n 34 GLU 34 B GLY 35 n 35 GLY 35 B ILE 36 n 36 ILE 36 B PRO 37 n 37 PRO 37 B PRO 38 n 38 PRO 38 B ASP 39 n 39 ASP 39 B GLN 40 n 40 GLN 40 B GLN 41 n 41 GLN 41 B ARG 42 n 42 ARG 42 B LEU 43 n 43 LEU 43 B ILE 44 n 44 ILE 44 B PHE 45 n 45 PHE 45 B ALA 46 n 46 ALA 46 B GLY 47 n 47 GLY 47 B LYS 48 n 48 LYS 48 B GLN 49 n 49 GLN 49 B LEU 50 n 50 LEU 50 B GLU 51 n 51 GLU 51 B ASP 52 n 52 ASP 52 B GLY 53 n 53 GLY 53 B ARG 54 n 54 ARG 54 B THR 55 n 55 THR 55 B LEU 56 n 56 LEU 56 B SER 57 n 57 SER 57 B ASP 58 n 58 ASP 58 B TYR 59 n 59 TYR 59 B ASN 60 n 60 ASN 60 B ILE 61 n 61 ILE 61 B GLN 62 n 62 GLN 62 B LYS 63 n 63 LYS 63 B GLU 64 n 64 GLU 64 B SER 65 n 65 SER 65 B THR 66 n 66 THR 66 B LEU 67 n 67 LEU 67 B HIS 68 n 68 HIS 68 B LEU 69 n 69 LEU 69 B VAL 70 n 70 VAL 70 B LEU 71 n 71 LEU 71 B ARG 72 n 72 ARG 72 B ALA 73 n 73 LEU 73 B n 74 74 B n 75 75 B n 76 76 B author_defined_assembly 2 dimeric software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 15 A O LEU 15 A N ILE 3 A N ILE 3 A N LYS 6 A N LYS 6 A O LEU 67 A O LEU 67 A O HIS 68 A O HIS 68 A N ILE 44 A N ILE 44 A N PHE 45 A N PHE 45 A O LYS 48 A O LYS 48 B O ILE 13 B O ILE 13 B N VAL 5 B N VAL 5 B N PHE 4 B N PHE 4 B O LEU 67 B O LEU 67 B O HIS 68 B O HIS 68 B N ILE 44 B N ILE 44 B N PHE 45 B N PHE 45 B O LYS 48 B O LYS 48 1 A CD GLU 24 A CD GLU 24 1 Y 1 A OE1 GLU 24 A OE1 GLU 24 1 Y 1 A OE2 GLU 24 A OE2 GLU 24 1 Y 1 A CG LEU 73 A CG LEU 73 1 Y 1 A CD1 LEU 73 A CD1 LEU 73 1 Y 1 A CD2 LEU 73 A CD2 LEU 73 1 Y 1 B CG LEU 73 B CG LEU 73 1 Y 1 B CD1 LEU 73 B CD1 LEU 73 1 Y 1 B CD2 LEU 73 B CD2 LEU 73 1 Y 1 B ARG 74 B ARG 74 1 Y 1 B GLY 75 B GLY 75 1 Y 1 B GLY 76 B GLY 76 1 Y 21.1 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2372 0.1861 0.1886 0.1886 1.707 18.293 636 13670 12906 4.93 94.41 0.22 RANDOM 1 Isotropic THROUGHOUT 1.36 MOLECULAR REPLACEMENT 0.90 1.11 1UBQ ML FLAT BULK SOLVENT MODEL 65.935 0.406 0.22 1.707 18.293 120 1321 27 0 1174 0.006 1282 1.115 1736 16.994 515 0.077 200 0.003 226 0.2457 0.1805 1.8385 115 1988 77.00 0.2566 0.1693 2.0233 113 2519 96.00 0.2344 0.1807 2.3156 143 2546 99.00 0.2405 0.1941 2.9155 126 2599 99.00 0.2255 0.1851 18.2937 139 2618 99.00 17.44 1.707 18.3 3NS8 13670 12906 0.0 2.0 0.073 1 17.3 4.5 94.41 1.71 1.76 5.4 968 0.18 1 3.7 72.7 data collection ADSC Quantum phasing MOLREP refinement PHENIX (phenix.refine: 1.5_2) data reduction HKL-2000 data scaling HKL-2000 N Crystal structure of an open conformation of Lys48-linked diubiquitin at pH 7.5 1 N N 1 N N 2 N N 2 N N 3 N N 4 N N 4 N N The biological unit is two monomers linked by an isopeptide bond between the carboxy-terminal glycine 76 of one monomer, and the lysine 48 side chain of the second monomer. A THR 22 A THR 22 HELX_P A GLY 35 A GLY 35 1 1 14 A PRO 37 A PRO 37 HELX_P A ASP 39 A ASP 39 5 2 3 A THR 55 A THR 55 HELX_P A ASN 60 A ASN 60 5 3 6 B THR 22 B THR 22 HELX_P B GLY 35 B GLY 35 1 4 14 B PRO 37 B PRO 37 HELX_P B ASP 39 B ASP 39 5 5 3 B THR 55 B THR 55 HELX_P B ASN 60 B ASN 60 5 6 6 covale 1.325 one A GLY 76 A C GLY 76 1_555 B LYS 48 B NZ LYS 48 1_555 SIGNALING PROTEIN Diubiquitin, isopeptide bond, SIGNALING PROTEIN UBIQ_HUMAN UNP 1 1 P62988 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 76 3NS8 1 76 P62988 A 1 1 76 1 76 3NS8 1 76 P62988 B 1 1 76 5 5 anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A THR 12 A THR 12 A GLU 16 A GLU 16 A GLN 2 A GLN 2 A LYS 6 A LYS 6 A THR 66 A THR 66 A LEU 71 A LEU 71 A GLN 41 A GLN 41 A PHE 45 A PHE 45 A LYS 48 A LYS 48 A GLN 49 A GLN 49 B THR 12 B THR 12 B GLU 16 B GLU 16 B GLN 2 B GLN 2 B LYS 6 B LYS 6 B THR 66 B THR 66 B LEU 71 B LEU 71 B GLN 41 B GLN 41 B PHE 45 B PHE 45 B LYS 48 B LYS 48 B GLN 49 B GLN 49 BINDING SITE FOR RESIDUE GOL A 77 A GOL 77 Software 9 BINDING SITE FOR RESIDUE GOL B 77 B GOL 77 Software 11 BINDING SITE FOR RESIDUE EPE B 78 B EPE 78 Software 11 A GLU 51 A GLU 51 9 1_555 A ASP 52 A ASP 52 9 1_555 A ARG 72 A ARG 72 9 1_555 A HOH 81 F HOH 9 1_555 A HOH 102 F HOH 9 1_555 A HOH 111 F HOH 9 1_555 B GLY 47 B GLY 47 9 1_555 B LYS 48 B LYS 48 9 1_555 B GLN 49 B GLN 49 9 1_555 A LYS 48 A LYS 48 11 1_455 A GLN 49 A GLN 49 11 1_455 A HOH 90 F HOH 11 1_455 A HOH 130 F HOH 11 1_455 B LYS 27 B LYS 27 11 1_555 B GLN 49 B GLN 49 11 1_555 B LEU 50 B LEU 50 11 1_555 B GLU 51 B GLU 51 11 1_555 B ASP 52 B ASP 52 11 1_555 B ARG 72 B ARG 72 11 1_555 B HOH 96 G HOH 11 1_555 B ASN 25 B ASN 25 11 1_655 B ALA 28 B ALA 28 11 1_655 B LYS 29 B LYS 29 11 1_655 B ASP 32 B ASP 32 11 1_655 B PHE 45 B PHE 45 11 1_555 B SER 65 B SER 65 11 1_555 B THR 66 B THR 66 11 1_555 B HIS 68 B HIS 68 11 1_555 B HOH 87 G HOH 11 1_555 B HOH 95 G HOH 11 1_555 B HOH 124 G HOH 11 1_655 4 P 1 21 1