0.017310 0.000000 0.000000 0.000000 0.011610 0.000000 0.000000 0.000000 0.021606 0.000000 0.000000 0.000000 Wang, Y.-F. Kovalevsky, A.Y. Weber, I.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 57.769 86.130 46.284 C25 H35 N3 O6 S 505.627 {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER Amprenavir non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N C N 3 N C N 4 S C N 5 S C N 6 R C N 7 N C Y 8 N C Y 9 N C Y 10 N C Y 11 N C Y 12 N C Y 13 N C N 14 N C N 15 N C N 16 N C Y 17 N C Y 18 N C Y 19 N C Y 20 N C Y 21 N C Y 22 N C N 23 N C N 24 N C N 25 N C N 26 N N N 27 N N N 28 N N N 29 N O N 30 N O N 31 N O N 32 N O N 33 N O N 34 N O N 35 N S N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N N N 72 S C N 73 N C N 74 N O N 75 N C N 76 N O N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N N N 85 S C N 86 N C N 87 N O N 88 N C N 89 N C N 90 N C N 91 N N N 92 N C N 93 N N N 94 N N N 95 N O N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N N N 112 S C N 113 N C N 114 N O N 115 N C N 116 N C N 117 N O N 118 N N N 119 N O N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 S C N 130 N C N 131 N O N 132 N C N 133 N C N 134 N O N 135 N O N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N CL N 145 N N N 146 R C N 147 N C N 148 N O N 149 N C N 150 N S N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 S C N 161 N C N 162 N O N 163 N C N 164 N C N 165 N C N 166 N O N 167 N N N 168 N O N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 S C N 181 N C N 182 N O N 183 N C N 184 N C N 185 N C N 186 N O N 187 N O N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 N C N 200 N C N 201 N O N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N N N 209 S C N 210 N C N 211 N O N 212 N C Y 213 N C Y 214 N N Y 215 N C Y 216 N C Y 217 N N N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N O N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 S C N 237 N C N 238 N C N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N C N 282 N C N 283 N C N 284 N N N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C N 306 N C N 307 N S N 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N NA N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N C N 351 N C N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N N N 363 S C N 364 N C N 365 N O N 366 N C N 367 N O N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 R C N 381 N O N 382 N C N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N N Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C N 407 N O N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C Y 425 N C Y 426 N C Y 427 N C Y 428 N C Y 429 N C Y 430 N C N 431 N O N 432 N O N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N N N 445 S C N 446 N C N 447 N O N 448 N C N 449 N C N 450 N C N 451 N O N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N doub Y 25 N sing Y 26 N sing N 27 N sing Y 28 N doub N 29 N sing Y 30 N doub N 31 N sing Y 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing Y 45 N doub Y 46 N sing N 47 N sing Y 48 N sing N 49 N sing Y 50 N doub N 51 N sing Y 52 N sing N 53 N sing Y 54 N doub N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing Y 212 N sing Y 213 N doub Y 214 N doub N 215 N sing Y 216 N sing N 217 N sing Y 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing Y 320 N doub Y 321 N sing Y 322 N sing N 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N doub N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing Y 389 N doub Y 390 N sing Y 391 N sing N 392 N sing Y 393 N doub Y 394 N sing Y 395 N sing N 396 N sing Y 397 N sing Y 398 N doub N 399 N sing Y 400 N doub N 401 N sing Y 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing Y 417 N doub Y 418 N sing Y 419 N sing N 420 N sing Y 421 N doub N 422 N sing Y 423 N doub N 424 N sing Y 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N doub N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing UK Febs J. 1742-464X 277 3699 3714 10.1111/j.1742-4658.2010.07771.x 20695887 Amprenavir complexes with HIV-1 protease and its drug-resistant mutants altering hydrophobic clusters. 2010 10.2210/pdb3nu4/pdb pdb_00003nu4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 CCD 2007-03-15 MARMOSAIC 300 mm CCD SINGLE WAVELENGTH M x-ray 1 0.8 1.0 22-ID APS 0.8 SYNCHROTRON APS BEAMLINE 22-ID 10754.703 protease 3.4.23.16 residues 501-599 Q7K, V32I, L33I, L63I, C67A, C95A 2 man polymer 22.990 SODIUM ION 1 syn non-polymer 35.453 CHLORIDE ION 3 syn non-polymer 505.627 {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER 1 syn non-polymer 18.015 water 150 nat water no no PQITLWKRPLVTIKIGGQLKEALLDTGADDTIIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF PQITLWKRPLVTIKIGGQLKEALLDTGADDTIIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia Escherichia coli sample gag, pol 11676 Human immunodeficiency virus 1 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid PET11A 1 2.68 54.05 VAPOR DIFFUSION, HANGING DROP 5.4 The vapour diffusion, hanging drop method is applied. Amprenvir was dissolved in DMSO. Protein concentration is 2.2 mg/ml. The ratio of inhibitor to protein is 5:1 in 0.1 M sodium acetate buffer (ph=5.4), with 0.4M NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2010-08-25 1 1 2011-07-13 1 2 2023-09-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Wild Type HIV-1 Protease with Antiviral Drug Darunavir Wild Type HIV-1 Protease with Antiviral Drug Amprenavir Crystal Structure of HIV-1 Protease Mutant I50V with Antiviral Drug Amprenavir Mutant I54M HIV-1 Protease with Antiviral Drug Amprenavir Mutant I54V HIV-1 Protease with Antiviral Drug Amprenavir Mutant I84V HIV-1 Protease with Antiviral Drug Amprenavir Crystal Structure of HIV-1 Protease Mutant L90M with Antiviral Drug Amprenavir RCSB Y RCSB 2010-07-06 REL REL NA SODIUM ION CL CHLORIDE ION 478 {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER HOH water 3NU3 PDB experimental model NA 500 2 NA NA 500 A CL 501 3 CL CL 501 A 478 401 4 478 478 401 B CL 502 3 CL CL 502 B CL 503 3 CL CL 503 B HOH 1002 5 HOH HOH 1002 A HOH 1004 5 HOH HOH 1004 A HOH 1008 5 HOH HOH 1008 A HOH 1009 5 HOH HOH 1009 A HOH 1010 5 HOH HOH 1010 A HOH 1013 5 HOH HOH 1013 A HOH 1017 5 HOH HOH 1017 A HOH 1019 5 HOH HOH 1019 A HOH 1021 5 HOH HOH 1021 A HOH 1022 5 HOH HOH 1022 A HOH 1023 5 HOH HOH 1023 A HOH 1024 5 HOH HOH 1024 A HOH 1026 5 HOH HOH 1026 A HOH 1031 5 HOH HOH 1031 A HOH 1033 5 HOH HOH 1033 A HOH 1034 5 HOH HOH 1034 A HOH 1035 5 HOH HOH 1035 A HOH 1036 5 HOH HOH 1036 A HOH 1038 5 HOH HOH 1038 A HOH 1042 5 HOH HOH 1042 A HOH 1044 5 HOH HOH 1044 A HOH 1045 5 HOH HOH 1045 A HOH 1046 5 HOH HOH 1046 A HOH 1047 5 HOH HOH 1047 A HOH 1053 5 HOH HOH 1053 A HOH 1055 5 HOH HOH 1055 A HOH 1058 5 HOH HOH 1058 A HOH 1059 5 HOH HOH 1059 A HOH 1060 5 HOH HOH 1060 A HOH 1063 5 HOH HOH 1063 A HOH 1064 5 HOH HOH 1064 A HOH 1065 5 HOH HOH 1065 A HOH 1067 5 HOH HOH 1067 A HOH 1077 5 HOH HOH 1077 A HOH 1078 5 HOH HOH 1078 A HOH 1081 5 HOH HOH 1081 A HOH 1082 5 HOH HOH 1082 A HOH 1083 5 HOH HOH 1083 A HOH 1084 5 HOH HOH 1084 A HOH 1086 5 HOH HOH 1086 A HOH 1087 5 HOH HOH 1087 A HOH 1091 5 HOH HOH 1091 A HOH 1094 5 HOH HOH 1094 A HOH 1097 5 HOH HOH 1097 A HOH 1108 5 HOH HOH 1108 A HOH 1111 5 HOH HOH 1111 A HOH 1114 5 HOH HOH 1114 A HOH 1117 5 HOH HOH 1117 A HOH 1120 5 HOH HOH 1120 A HOH 1123 5 HOH HOH 1123 A HOH 1125 5 HOH HOH 1125 A HOH 1128 5 HOH HOH 1128 A HOH 1140 5 HOH HOH 1140 A HOH 1142 5 HOH HOH 1142 A HOH 1145 5 HOH HOH 1145 A HOH 1150 5 HOH HOH 1150 A HOH 1154 5 HOH HOH 1154 A HOH 1155 5 HOH HOH 1155 A HOH 1158 5 HOH HOH 1158 A HOH 1160 5 HOH HOH 1160 A HOH 1162 5 HOH HOH 1162 A HOH 1164 5 HOH HOH 1164 A HOH 1166 5 HOH HOH 1166 A HOH 1172 5 HOH HOH 1172 A HOH 1175 5 HOH HOH 1175 A HOH 1176 5 HOH HOH 1176 A HOH 1179 5 HOH HOH 1179 A HOH 1180 5 HOH HOH 1180 A HOH 1183 5 HOH HOH 1183 A HOH 1184 5 HOH HOH 1184 A HOH 1188 5 HOH HOH 1188 A HOH 1189 5 HOH HOH 1189 A HOH 1001 5 HOH HOH 1001 B HOH 1003 5 HOH HOH 1003 B HOH 1005 5 HOH HOH 1005 B HOH 1006 5 HOH HOH 1006 B HOH 1007 5 HOH HOH 1007 B HOH 1011 5 HOH HOH 1011 B HOH 1012 5 HOH HOH 1012 B HOH 1014 5 HOH HOH 1014 B HOH 1015 5 HOH HOH 1015 B HOH 1016 5 HOH HOH 1016 B HOH 1018 5 HOH HOH 1018 B HOH 1020 5 HOH HOH 1020 B HOH 1025 5 HOH HOH 1025 B HOH 1027 5 HOH HOH 1027 B HOH 1028 5 HOH HOH 1028 B HOH 1029 5 HOH HOH 1029 B HOH 1030 5 HOH HOH 1030 B HOH 1032 5 HOH HOH 1032 B HOH 1037 5 HOH HOH 1037 B HOH 1039 5 HOH HOH 1039 B HOH 1040 5 HOH HOH 1040 B HOH 1041 5 HOH HOH 1041 B HOH 1043 5 HOH HOH 1043 B HOH 1048 5 HOH HOH 1048 B HOH 1049 5 HOH HOH 1049 B HOH 1050 5 HOH HOH 1050 B HOH 1051 5 HOH HOH 1051 B HOH 1052 5 HOH HOH 1052 B HOH 1054 5 HOH HOH 1054 B HOH 1056 5 HOH HOH 1056 B HOH 1057 5 HOH HOH 1057 B HOH 1061 5 HOH HOH 1061 B HOH 1062 5 HOH HOH 1062 B HOH 1066 5 HOH HOH 1066 B HOH 1068 5 HOH HOH 1068 B HOH 1069 5 HOH HOH 1069 B HOH 1070 5 HOH HOH 1070 B HOH 1071 5 HOH HOH 1071 B HOH 1072 5 HOH HOH 1072 B HOH 1073 5 HOH HOH 1073 B HOH 1074 5 HOH HOH 1074 B HOH 1075 5 HOH HOH 1075 B HOH 1076 5 HOH HOH 1076 B HOH 1085 5 HOH HOH 1085 B HOH 1088 5 HOH HOH 1088 B HOH 1090 5 HOH HOH 1090 B HOH 1093 5 HOH HOH 1093 B HOH 1099 5 HOH HOH 1099 B HOH 1101 5 HOH HOH 1101 B HOH 1104 5 HOH HOH 1104 B HOH 1106 5 HOH HOH 1106 B HOH 1107 5 HOH HOH 1107 B HOH 1119 5 HOH HOH 1119 B HOH 1141 5 HOH HOH 1141 B HOH 1144 5 HOH HOH 1144 B HOH 1146 5 HOH HOH 1146 B HOH 1147 5 HOH HOH 1147 B HOH 1148 5 HOH HOH 1148 B HOH 1149 5 HOH HOH 1149 B HOH 1151 5 HOH HOH 1151 B HOH 1152 5 HOH HOH 1152 B HOH 1153 5 HOH HOH 1153 B HOH 1157 5 HOH HOH 1157 B HOH 1159 5 HOH HOH 1159 B HOH 1161 5 HOH HOH 1161 B HOH 1163 5 HOH HOH 1163 B HOH 1165 5 HOH HOH 1165 B HOH 1167 5 HOH HOH 1167 B HOH 1168 5 HOH HOH 1168 B HOH 1173 5 HOH HOH 1173 B HOH 1177 5 HOH HOH 1177 B HOH 1181 5 HOH HOH 1181 B HOH 1182 5 HOH HOH 1182 B HOH 1185 5 HOH HOH 1185 B HOH 1186 5 HOH HOH 1186 B HOH 1187 5 HOH HOH 1187 B HOH 1190 5 HOH HOH 1190 B HOH 1191 5 HOH HOH 1191 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A ILE 32 n 32 ILE 32 A ILE 33 n 33 ILE 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A ILE 63 n 63 ILE 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A ALA 67 n 67 ALA 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A ALA 95 n 95 ALA 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 101 n 1 PRO 101 B GLN 102 n 2 GLN 102 B ILE 103 n 3 ILE 103 B THR 104 n 4 THR 104 B LEU 105 n 5 LEU 105 B TRP 106 n 6 TRP 106 B LYS 107 n 7 LYS 107 B ARG 108 n 8 ARG 108 B PRO 109 n 9 PRO 109 B LEU 110 n 10 LEU 110 B VAL 111 n 11 VAL 111 B THR 112 n 12 THR 112 B ILE 113 n 13 ILE 113 B LYS 114 n 14 LYS 114 B ILE 115 n 15 ILE 115 B GLY 116 n 16 GLY 116 B GLY 117 n 17 GLY 117 B GLN 118 n 18 GLN 118 B LEU 119 n 19 LEU 119 B LYS 120 n 20 LYS 120 B GLU 121 n 21 GLU 121 B ALA 122 n 22 ALA 122 B LEU 123 n 23 LEU 123 B LEU 124 n 24 LEU 124 B ASP 125 n 25 ASP 125 B THR 126 n 26 THR 126 B GLY 127 n 27 GLY 127 B ALA 128 n 28 ALA 128 B ASP 129 n 29 ASP 129 B ASP 130 n 30 ASP 130 B THR 131 n 31 THR 131 B ILE 132 n 32 ILE 132 B ILE 133 n 33 ILE 133 B GLU 134 n 34 GLU 134 B GLU 135 n 35 GLU 135 B MET 136 n 36 MET 136 B SER 137 n 37 SER 137 B LEU 138 n 38 LEU 138 B PRO 139 n 39 PRO 139 B GLY 140 n 40 GLY 140 B ARG 141 n 41 ARG 141 B TRP 142 n 42 TRP 142 B LYS 143 n 43 LYS 143 B PRO 144 n 44 PRO 144 B LYS 145 n 45 LYS 145 B MET 146 n 46 MET 146 B ILE 147 n 47 ILE 147 B GLY 148 n 48 GLY 148 B GLY 149 n 49 GLY 149 B ILE 150 n 50 ILE 150 B GLY 151 n 51 GLY 151 B GLY 152 n 52 GLY 152 B PHE 153 n 53 PHE 153 B ILE 154 n 54 ILE 154 B LYS 155 n 55 LYS 155 B VAL 156 n 56 VAL 156 B ARG 157 n 57 ARG 157 B GLN 158 n 58 GLN 158 B TYR 159 n 59 TYR 159 B ASP 160 n 60 ASP 160 B GLN 161 n 61 GLN 161 B ILE 162 n 62 ILE 162 B ILE 163 n 63 ILE 163 B ILE 164 n 64 ILE 164 B GLU 165 n 65 GLU 165 B ILE 166 n 66 ILE 166 B ALA 167 n 67 ALA 167 B GLY 168 n 68 GLY 168 B HIS 169 n 69 HIS 169 B LYS 170 n 70 LYS 170 B ALA 171 n 71 ALA 171 B ILE 172 n 72 ILE 172 B GLY 173 n 73 GLY 173 B THR 174 n 74 THR 174 B VAL 175 n 75 VAL 175 B LEU 176 n 76 LEU 176 B VAL 177 n 77 VAL 177 B GLY 178 n 78 GLY 178 B PRO 179 n 79 PRO 179 B THR 180 n 80 THR 180 B PRO 181 n 81 PRO 181 B VAL 182 n 82 VAL 182 B ASN 183 n 83 ASN 183 B ILE 184 n 84 ILE 184 B ILE 185 n 85 ILE 185 B GLY 186 n 86 GLY 186 B ARG 187 n 87 ARG 187 B ASN 188 n 88 ASN 188 B LEU 189 n 89 LEU 189 B LEU 190 n 90 LEU 190 B THR 191 n 91 THR 191 B GLN 192 n 92 GLN 192 B ILE 193 n 93 ILE 193 B GLY 194 n 94 GLY 194 B ALA 195 n 95 ALA 195 B THR 196 n 96 THR 196 B LEU 197 n 97 LEU 197 B ASN 198 n 98 ASN 198 B PHE 199 n 99 PHE 199 B 0.1468 0.1639 0.1449 0.1619 0.1824 0.2002 2576 3326 5.0 5.0 51309 author_and_software_defined_assembly PISA 2 dimeric 3620 -22 9890 A ASP 60 A O ASP 60 1_555 A NA 500 C NA NA 1_555 A HOH 1058 H O HOH 1_555 94.7 A ASP 60 A O ASP 60 1_555 A NA 500 C NA NA 1_555 A HOH 1082 H O HOH 1_555 76.6 A HOH 1058 H O HOH 1_555 A NA 500 C NA NA 1_555 A HOH 1082 H O HOH 1_555 170.8 A ASP 60 A O ASP 60 1_555 A NA 500 C NA NA 1_555 A HOH 1114 H O HOH 1_555 98.3 A HOH 1058 H O HOH 1_555 A NA 500 C NA NA 1_555 A HOH 1114 H O HOH 1_555 76.4 A HOH 1082 H O HOH 1_555 A NA 500 C NA NA 1_555 A HOH 1114 H O HOH 1_555 101.7 A ASP 60 A O ASP 60 1_555 A NA 500 C NA NA 1_555 A HOH 1145 H O HOH 1_555 171.3 A HOH 1058 H O HOH 1_555 A NA 500 C NA NA 1_555 A HOH 1145 H O HOH 1_555 90.2 A HOH 1082 H O HOH 1_555 A NA 500 C NA NA 1_555 A HOH 1145 H O HOH 1_555 98.8 A HOH 1114 H O HOH 1_555 A NA 500 C NA NA 1_555 A HOH 1145 H O HOH 1_555 89.8 A ASP 60 A O ASP 60 1_555 A NA 500 C NA NA 1_555 A HOH 1180 H O HOH 1_555 96.7 A HOH 1058 H O HOH 1_555 A NA 500 C NA NA 1_555 A HOH 1180 H O HOH 1_555 92.8 A HOH 1082 H O HOH 1_555 A NA 500 C NA NA 1_555 A HOH 1180 H O HOH 1_555 91.1 A HOH 1114 H O HOH 1_555 A NA 500 C NA NA 1_555 A HOH 1180 H O HOH 1_555 162.1 A HOH 1145 H O HOH 1_555 A NA 500 C NA NA 1_555 A HOH 1180 H O HOH 1_555 75.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 197 B O LEU 97 B O ASN 198 B O ASN 98 A N THR 96 A N THR 96 A N LEU 97 A N LEU 97 B O ILE 103 B O ILE 3 A N LYS 43 A N LYS 43 A O GLN 58 A O GLN 58 A N ILE 66 A N ILE 66 A O HIS 69 A O HIS 69 A O LEU 76 A O LEU 76 A N THR 31 A N THR 31 A N ILE 32 A N ILE 32 A O ILE 84 A O ILE 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O LYS 20 A O LYS 20 A N ILE 13 A N ILE 13 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 B N LYS 145 B N LYS 45 B O VAL 156 B O VAL 56 B N ILE 166 B N ILE 66 B O HIS 169 B O HIS 69 B O LEU 176 B O LEU 76 B N ILE 133 B N ILE 33 B N ILE 132 B N ILE 32 B O ILE 184 B O ILE 84 B O ILE 185 B O ILE 85 B N LEU 123 B N LEU 23 B O LYS 120 B O LYS 20 B N ILE 113 B N ILE 13 B N LYS 114 B N LYS 14 B O GLU 165 B O GLU 65 1 15.28 1.40 123.60 138.88 A A A CD NE CZ ARG ARG ARG 57 57 57 A A A N 1 4.51 0.50 120.30 124.81 B B B NE CZ NH1 ARG ARG ARG 108 108 108 N 1 -3.29 0.50 120.30 117.01 B B B NE CZ NH2 ARG ARG ARG 141 141 141 N 1 -5.24 0.80 121.30 116.06 B B B CG CD2 CE2 TYR TYR TYR 159 159 159 N 1 3.58 0.50 120.30 123.88 B B B NE CZ NH1 ARG ARG ARG 187 187 187 N 1 -3.32 0.50 120.30 116.98 B B B NE CZ NH2 ARG ARG ARG 187 187 187 N conjugate gradient minimization 0.2002 0.1619 0.1639 0.1619 1.20 10.00 15883 3326 20162 5.0 91.6 RANDOM 1 FREE R 0.0 MOLECULAR REPLACEMENT 3NU3 Engh & Huber 15 1637.00 1674.81 1.20 10.00 150 1703 39 0 1514 0.013 0.031 0.000 0.0293 0.068 0.076 0.029 0.004 0.038 0.080 12.517 1.20 50 3NU4 66626 66626 0 0 0.081 1 6.1 91.6 0.442 1.20 1.24 2.5 4482 3.4 62.7 data collection HKL-2000 phasing AMoRE refinement SHELXL-97 data reduction HKL-2000 data scaling HKL-2000 Crystal Structure of HIV-1 Protease Mutant V32I with Antiviral Drug Amprenavir 1 N N 1 N N 2 N N 3 N N 4 N N 3 N N 3 N N 5 N N 5 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 2 3 B GLY 186 B GLY 86 HELX_P B ILE 193 B ILE 93 1 3 8 metalc 2.430 A ASP 60 A O ASP 60 1_555 A NA 500 C NA NA 1_555 metalc 2.413 A NA 500 C NA NA 1_555 A HOH 1058 H O HOH 1_555 metalc 2.507 A NA 500 C NA NA 1_555 A HOH 1082 H O HOH 1_555 metalc 2.273 A NA 500 C NA NA 1_555 A HOH 1114 H O HOH 1_555 metalc 2.536 A NA 500 C NA NA 1_555 A HOH 1145 H O HOH 1_555 metalc 2.365 A NA 500 C NA NA 1_555 A HOH 1180 H O HOH 1_555 HYDROLASE/HYDROLASE INHIBITOR enzyme inhibition, aspartic protease, HIV/AIDS, conformational change, Amprenavir, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR complex POL_HV1B1 UNP 1 501 P03366 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 501 599 3NU4 1 99 P03366 A 1 1 99 501 599 3NU4 101 199 P03366 B 1 1 99 1 GLN engineered mutation LYS 7 3NU4 A P03366 UNP 507 7 1 VAL engineered mutation ILE 32 3NU4 A P03366 UNP 532 32 1 LEU engineered mutation ILE 33 3NU4 A P03366 UNP 533 33 1 LEU engineered mutation ILE 63 3NU4 A P03366 UNP 563 63 1 CYS engineered mutation ALA 67 3NU4 A P03366 UNP 567 67 1 CYS engineered mutation ALA 95 3NU4 A P03366 UNP 595 95 2 GLN engineered mutation LYS 107 3NU4 B P03366 UNP 507 7 2 VAL engineered mutation ILE 132 3NU4 B P03366 UNP 532 32 2 LEU engineered mutation ILE 133 3NU4 B P03366 UNP 533 33 2 LEU engineered mutation ILE 163 3NU4 B P03366 UNP 563 63 2 CYS engineered mutation ALA 167 3NU4 B P03366 UNP 567 67 2 CYS engineered mutation ALA 195 3NU4 B P03366 UNP 595 95 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 196 B THR 96 B ASN 198 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 102 B GLN 2 B ILE 103 B ILE 3 A TRP 42 A TRP 42 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A THR 31 A THR 31 A ILE 33 A ILE 33 A ILE 84 A ILE 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 143 B LYS 43 B GLY 149 B GLY 49 B GLY 152 B GLY 52 B ILE 166 B ILE 66 B HIS 169 B HIS 69 B VAL 177 B VAL 77 B ILE 132 B ILE 32 B ILE 133 B ILE 33 B ILE 184 B ILE 84 B ILE 185 B ILE 85 B GLN 118 B GLN 18 B LEU 124 B LEU 24 B LEU 110 B LEU 10 B ILE 115 B ILE 15 B GLY 152 B GLY 52 B ILE 166 B ILE 66 BINDING SITE FOR RESIDUE NA A 500 A NA 500 Software 6 BINDING SITE FOR RESIDUE CL A 501 A CL 501 Software 3 BINDING SITE FOR RESIDUE 478 B 401 B 478 401 Software 17 BINDING SITE FOR RESIDUE CL B 502 B CL 502 Software 1 BINDING SITE FOR RESIDUE CL B 503 B CL 503 Software 3 A ASP 60 A ASP 60 6 1_555 A HOH 1058 H HOH 6 1_555 A HOH 1082 H HOH 6 1_555 A HOH 1114 H HOH 6 1_555 A HOH 1145 H HOH 6 1_555 A HOH 1180 H HOH 6 1_555 A THR 74 A THR 74 3 1_555 A ASN 88 A ASN 88 3 1_555 B ARG 141 B ARG 41 3 3_556 A ASP 25 A ASP 25 17 1_555 A GLY 27 A GLY 27 17 1_555 A ALA 28 A ALA 28 17 1_555 A ASP 30 A ASP 30 17 1_555 A GLY 48 A GLY 48 17 1_555 A GLY 49 A GLY 49 17 1_555 A VAL 82 A VAL 82 17 1_555 A HOH 1047 H HOH 17 1_555 B ASP 125 B ASP 25 17 1_555 B GLY 127 B GLY 27 17 1_555 B ALA 128 B ALA 28 17 1_555 B ASP 129 B ASP 29 17 1_555 B ASP 130 B ASP 30 17 1_555 B GLY 148 B GLY 48 17 1_555 B GLY 149 B GLY 49 17 1_555 B ILE 150 B ILE 50 17 1_555 B HOH 1001 I HOH 17 1_555 B TRP 106 B TRP 6 1 1_555 B THR 174 B THR 74 3 1_555 B ASN 188 B ASN 88 3 1_555 B HOH 1057 I HOH 3 1_555 18 P 21 21 2