0.017310
0.000000
0.000000
0.000000
0.011610
0.000000
0.000000
0.000000
0.021606
0.000000
0.000000
0.000000
Wang, Y.-F.
Kovalevsky, A.Y.
Weber, I.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
57.769
86.130
46.284
C25 H35 N3 O6 S
505.627
{3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER
Amprenavir
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
C
N
3
N
C
N
4
S
C
N
5
S
C
N
6
R
C
N
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
N
14
N
C
N
15
N
C
N
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
N
23
N
C
N
24
N
C
N
25
N
C
N
26
N
N
N
27
N
N
N
28
N
N
N
29
N
O
N
30
N
O
N
31
N
O
N
32
N
O
N
33
N
O
N
34
N
O
N
35
N
S
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
N
N
72
S
C
N
73
N
C
N
74
N
O
N
75
N
C
N
76
N
O
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
S
C
N
86
N
C
N
87
N
O
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
N
N
94
N
N
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
N
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
S
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
CL
N
145
N
N
N
146
R
C
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
S
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
S
C
N
161
N
C
N
162
N
O
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
N
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
O
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
N
C
Y
213
N
C
Y
214
N
N
Y
215
N
C
Y
216
N
C
Y
217
N
N
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
S
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
N
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
C
N
307
N
S
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
NA
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
N
367
N
O
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
R
C
N
381
N
O
N
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
N
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
N
431
N
O
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
N
C
N
449
N
C
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
doub
Y
25
N
sing
Y
26
N
sing
N
27
N
sing
Y
28
N
doub
N
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
Y
45
N
doub
Y
46
N
sing
N
47
N
sing
Y
48
N
sing
N
49
N
sing
Y
50
N
doub
N
51
N
sing
Y
52
N
sing
N
53
N
sing
Y
54
N
doub
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
Y
212
N
sing
Y
213
N
doub
Y
214
N
doub
N
215
N
sing
Y
216
N
sing
N
217
N
sing
Y
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
Y
320
N
doub
Y
321
N
sing
Y
322
N
sing
N
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
Y
389
N
doub
Y
390
N
sing
Y
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
sing
Y
398
N
doub
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
Y
417
N
doub
Y
418
N
sing
Y
419
N
sing
N
420
N
sing
Y
421
N
doub
N
422
N
sing
Y
423
N
doub
N
424
N
sing
Y
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
UK
Febs J.
1742-464X
277
3699
3714
10.1111/j.1742-4658.2010.07771.x
20695887
Amprenavir complexes with HIV-1 protease and its drug-resistant mutants altering hydrophobic clusters.
2010
10.2210/pdb3nu4/pdb
pdb_00003nu4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
CCD
2007-03-15
MARMOSAIC 300 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.8
1.0
22-ID
APS
0.8
SYNCHROTRON
APS BEAMLINE 22-ID
10754.703
protease
3.4.23.16
residues 501-599
Q7K, V32I, L33I, L63I, C67A, C95A
2
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
35.453
CHLORIDE ION
3
syn
non-polymer
505.627
{3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER
1
syn
non-polymer
18.015
water
150
nat
water
no
no
PQITLWKRPLVTIKIGGQLKEALLDTGADDTIIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PVNIIGRNLLTQIGATLNF
PQITLWKRPLVTIKIGGQLKEALLDTGADDTIIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PVNIIGRNLLTQIGATLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
Escherichia coli
sample
gag, pol
11676
Human immunodeficiency virus 1
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
PET11A
1
2.68
54.05
VAPOR DIFFUSION, HANGING DROP
5.4
The vapour diffusion, hanging drop method is applied. Amprenvir was dissolved in DMSO. Protein concentration is 2.2 mg/ml. The ratio of inhibitor to protein is 5:1 in 0.1 M sodium acetate buffer (ph=5.4), with 0.4M NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-08-25
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Wild Type HIV-1 Protease with Antiviral Drug Darunavir
Wild Type HIV-1 Protease with Antiviral Drug Amprenavir
Crystal Structure of HIV-1 Protease Mutant I50V with Antiviral Drug Amprenavir
Mutant I54M HIV-1 Protease with Antiviral Drug Amprenavir
Mutant I54V HIV-1 Protease with Antiviral Drug Amprenavir
Mutant I84V HIV-1 Protease with Antiviral Drug Amprenavir
Crystal Structure of HIV-1 Protease Mutant L90M with Antiviral Drug Amprenavir
RCSB
Y
RCSB
2010-07-06
REL
REL
NA
SODIUM ION
CL
CHLORIDE ION
478
{3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER
HOH
water
3NU3
PDB
experimental model
NA
500
2
NA
NA
500
A
CL
501
3
CL
CL
501
A
478
401
4
478
478
401
B
CL
502
3
CL
CL
502
B
CL
503
3
CL
CL
503
B
HOH
1002
5
HOH
HOH
1002
A
HOH
1004
5
HOH
HOH
1004
A
HOH
1008
5
HOH
HOH
1008
A
HOH
1009
5
HOH
HOH
1009
A
HOH
1010
5
HOH
HOH
1010
A
HOH
1013
5
HOH
HOH
1013
A
HOH
1017
5
HOH
HOH
1017
A
HOH
1019
5
HOH
HOH
1019
A
HOH
1021
5
HOH
HOH
1021
A
HOH
1022
5
HOH
HOH
1022
A
HOH
1023
5
HOH
HOH
1023
A
HOH
1024
5
HOH
HOH
1024
A
HOH
1026
5
HOH
HOH
1026
A
HOH
1031
5
HOH
HOH
1031
A
HOH
1033
5
HOH
HOH
1033
A
HOH
1034
5
HOH
HOH
1034
A
HOH
1035
5
HOH
HOH
1035
A
HOH
1036
5
HOH
HOH
1036
A
HOH
1038
5
HOH
HOH
1038
A
HOH
1042
5
HOH
HOH
1042
A
HOH
1044
5
HOH
HOH
1044
A
HOH
1045
5
HOH
HOH
1045
A
HOH
1046
5
HOH
HOH
1046
A
HOH
1047
5
HOH
HOH
1047
A
HOH
1053
5
HOH
HOH
1053
A
HOH
1055
5
HOH
HOH
1055
A
HOH
1058
5
HOH
HOH
1058
A
HOH
1059
5
HOH
HOH
1059
A
HOH
1060
5
HOH
HOH
1060
A
HOH
1063
5
HOH
HOH
1063
A
HOH
1064
5
HOH
HOH
1064
A
HOH
1065
5
HOH
HOH
1065
A
HOH
1067
5
HOH
HOH
1067
A
HOH
1077
5
HOH
HOH
1077
A
HOH
1078
5
HOH
HOH
1078
A
HOH
1081
5
HOH
HOH
1081
A
HOH
1082
5
HOH
HOH
1082
A
HOH
1083
5
HOH
HOH
1083
A
HOH
1084
5
HOH
HOH
1084
A
HOH
1086
5
HOH
HOH
1086
A
HOH
1087
5
HOH
HOH
1087
A
HOH
1091
5
HOH
HOH
1091
A
HOH
1094
5
HOH
HOH
1094
A
HOH
1097
5
HOH
HOH
1097
A
HOH
1108
5
HOH
HOH
1108
A
HOH
1111
5
HOH
HOH
1111
A
HOH
1114
5
HOH
HOH
1114
A
HOH
1117
5
HOH
HOH
1117
A
HOH
1120
5
HOH
HOH
1120
A
HOH
1123
5
HOH
HOH
1123
A
HOH
1125
5
HOH
HOH
1125
A
HOH
1128
5
HOH
HOH
1128
A
HOH
1140
5
HOH
HOH
1140
A
HOH
1142
5
HOH
HOH
1142
A
HOH
1145
5
HOH
HOH
1145
A
HOH
1150
5
HOH
HOH
1150
A
HOH
1154
5
HOH
HOH
1154
A
HOH
1155
5
HOH
HOH
1155
A
HOH
1158
5
HOH
HOH
1158
A
HOH
1160
5
HOH
HOH
1160
A
HOH
1162
5
HOH
HOH
1162
A
HOH
1164
5
HOH
HOH
1164
A
HOH
1166
5
HOH
HOH
1166
A
HOH
1172
5
HOH
HOH
1172
A
HOH
1175
5
HOH
HOH
1175
A
HOH
1176
5
HOH
HOH
1176
A
HOH
1179
5
HOH
HOH
1179
A
HOH
1180
5
HOH
HOH
1180
A
HOH
1183
5
HOH
HOH
1183
A
HOH
1184
5
HOH
HOH
1184
A
HOH
1188
5
HOH
HOH
1188
A
HOH
1189
5
HOH
HOH
1189
A
HOH
1001
5
HOH
HOH
1001
B
HOH
1003
5
HOH
HOH
1003
B
HOH
1005
5
HOH
HOH
1005
B
HOH
1006
5
HOH
HOH
1006
B
HOH
1007
5
HOH
HOH
1007
B
HOH
1011
5
HOH
HOH
1011
B
HOH
1012
5
HOH
HOH
1012
B
HOH
1014
5
HOH
HOH
1014
B
HOH
1015
5
HOH
HOH
1015
B
HOH
1016
5
HOH
HOH
1016
B
HOH
1018
5
HOH
HOH
1018
B
HOH
1020
5
HOH
HOH
1020
B
HOH
1025
5
HOH
HOH
1025
B
HOH
1027
5
HOH
HOH
1027
B
HOH
1028
5
HOH
HOH
1028
B
HOH
1029
5
HOH
HOH
1029
B
HOH
1030
5
HOH
HOH
1030
B
HOH
1032
5
HOH
HOH
1032
B
HOH
1037
5
HOH
HOH
1037
B
HOH
1039
5
HOH
HOH
1039
B
HOH
1040
5
HOH
HOH
1040
B
HOH
1041
5
HOH
HOH
1041
B
HOH
1043
5
HOH
HOH
1043
B
HOH
1048
5
HOH
HOH
1048
B
HOH
1049
5
HOH
HOH
1049
B
HOH
1050
5
HOH
HOH
1050
B
HOH
1051
5
HOH
HOH
1051
B
HOH
1052
5
HOH
HOH
1052
B
HOH
1054
5
HOH
HOH
1054
B
HOH
1056
5
HOH
HOH
1056
B
HOH
1057
5
HOH
HOH
1057
B
HOH
1061
5
HOH
HOH
1061
B
HOH
1062
5
HOH
HOH
1062
B
HOH
1066
5
HOH
HOH
1066
B
HOH
1068
5
HOH
HOH
1068
B
HOH
1069
5
HOH
HOH
1069
B
HOH
1070
5
HOH
HOH
1070
B
HOH
1071
5
HOH
HOH
1071
B
HOH
1072
5
HOH
HOH
1072
B
HOH
1073
5
HOH
HOH
1073
B
HOH
1074
5
HOH
HOH
1074
B
HOH
1075
5
HOH
HOH
1075
B
HOH
1076
5
HOH
HOH
1076
B
HOH
1085
5
HOH
HOH
1085
B
HOH
1088
5
HOH
HOH
1088
B
HOH
1090
5
HOH
HOH
1090
B
HOH
1093
5
HOH
HOH
1093
B
HOH
1099
5
HOH
HOH
1099
B
HOH
1101
5
HOH
HOH
1101
B
HOH
1104
5
HOH
HOH
1104
B
HOH
1106
5
HOH
HOH
1106
B
HOH
1107
5
HOH
HOH
1107
B
HOH
1119
5
HOH
HOH
1119
B
HOH
1141
5
HOH
HOH
1141
B
HOH
1144
5
HOH
HOH
1144
B
HOH
1146
5
HOH
HOH
1146
B
HOH
1147
5
HOH
HOH
1147
B
HOH
1148
5
HOH
HOH
1148
B
HOH
1149
5
HOH
HOH
1149
B
HOH
1151
5
HOH
HOH
1151
B
HOH
1152
5
HOH
HOH
1152
B
HOH
1153
5
HOH
HOH
1153
B
HOH
1157
5
HOH
HOH
1157
B
HOH
1159
5
HOH
HOH
1159
B
HOH
1161
5
HOH
HOH
1161
B
HOH
1163
5
HOH
HOH
1163
B
HOH
1165
5
HOH
HOH
1165
B
HOH
1167
5
HOH
HOH
1167
B
HOH
1168
5
HOH
HOH
1168
B
HOH
1173
5
HOH
HOH
1173
B
HOH
1177
5
HOH
HOH
1177
B
HOH
1181
5
HOH
HOH
1181
B
HOH
1182
5
HOH
HOH
1182
B
HOH
1185
5
HOH
HOH
1185
B
HOH
1186
5
HOH
HOH
1186
B
HOH
1187
5
HOH
HOH
1187
B
HOH
1190
5
HOH
HOH
1190
B
HOH
1191
5
HOH
HOH
1191
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
LYS
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
ILE
32
n
32
ILE
32
A
ILE
33
n
33
ILE
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
ILE
63
n
63
ILE
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
ALA
95
n
95
ALA
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
101
n
1
PRO
101
B
GLN
102
n
2
GLN
102
B
ILE
103
n
3
ILE
103
B
THR
104
n
4
THR
104
B
LEU
105
n
5
LEU
105
B
TRP
106
n
6
TRP
106
B
LYS
107
n
7
LYS
107
B
ARG
108
n
8
ARG
108
B
PRO
109
n
9
PRO
109
B
LEU
110
n
10
LEU
110
B
VAL
111
n
11
VAL
111
B
THR
112
n
12
THR
112
B
ILE
113
n
13
ILE
113
B
LYS
114
n
14
LYS
114
B
ILE
115
n
15
ILE
115
B
GLY
116
n
16
GLY
116
B
GLY
117
n
17
GLY
117
B
GLN
118
n
18
GLN
118
B
LEU
119
n
19
LEU
119
B
LYS
120
n
20
LYS
120
B
GLU
121
n
21
GLU
121
B
ALA
122
n
22
ALA
122
B
LEU
123
n
23
LEU
123
B
LEU
124
n
24
LEU
124
B
ASP
125
n
25
ASP
125
B
THR
126
n
26
THR
126
B
GLY
127
n
27
GLY
127
B
ALA
128
n
28
ALA
128
B
ASP
129
n
29
ASP
129
B
ASP
130
n
30
ASP
130
B
THR
131
n
31
THR
131
B
ILE
132
n
32
ILE
132
B
ILE
133
n
33
ILE
133
B
GLU
134
n
34
GLU
134
B
GLU
135
n
35
GLU
135
B
MET
136
n
36
MET
136
B
SER
137
n
37
SER
137
B
LEU
138
n
38
LEU
138
B
PRO
139
n
39
PRO
139
B
GLY
140
n
40
GLY
140
B
ARG
141
n
41
ARG
141
B
TRP
142
n
42
TRP
142
B
LYS
143
n
43
LYS
143
B
PRO
144
n
44
PRO
144
B
LYS
145
n
45
LYS
145
B
MET
146
n
46
MET
146
B
ILE
147
n
47
ILE
147
B
GLY
148
n
48
GLY
148
B
GLY
149
n
49
GLY
149
B
ILE
150
n
50
ILE
150
B
GLY
151
n
51
GLY
151
B
GLY
152
n
52
GLY
152
B
PHE
153
n
53
PHE
153
B
ILE
154
n
54
ILE
154
B
LYS
155
n
55
LYS
155
B
VAL
156
n
56
VAL
156
B
ARG
157
n
57
ARG
157
B
GLN
158
n
58
GLN
158
B
TYR
159
n
59
TYR
159
B
ASP
160
n
60
ASP
160
B
GLN
161
n
61
GLN
161
B
ILE
162
n
62
ILE
162
B
ILE
163
n
63
ILE
163
B
ILE
164
n
64
ILE
164
B
GLU
165
n
65
GLU
165
B
ILE
166
n
66
ILE
166
B
ALA
167
n
67
ALA
167
B
GLY
168
n
68
GLY
168
B
HIS
169
n
69
HIS
169
B
LYS
170
n
70
LYS
170
B
ALA
171
n
71
ALA
171
B
ILE
172
n
72
ILE
172
B
GLY
173
n
73
GLY
173
B
THR
174
n
74
THR
174
B
VAL
175
n
75
VAL
175
B
LEU
176
n
76
LEU
176
B
VAL
177
n
77
VAL
177
B
GLY
178
n
78
GLY
178
B
PRO
179
n
79
PRO
179
B
THR
180
n
80
THR
180
B
PRO
181
n
81
PRO
181
B
VAL
182
n
82
VAL
182
B
ASN
183
n
83
ASN
183
B
ILE
184
n
84
ILE
184
B
ILE
185
n
85
ILE
185
B
GLY
186
n
86
GLY
186
B
ARG
187
n
87
ARG
187
B
ASN
188
n
88
ASN
188
B
LEU
189
n
89
LEU
189
B
LEU
190
n
90
LEU
190
B
THR
191
n
91
THR
191
B
GLN
192
n
92
GLN
192
B
ILE
193
n
93
ILE
193
B
GLY
194
n
94
GLY
194
B
ALA
195
n
95
ALA
195
B
THR
196
n
96
THR
196
B
LEU
197
n
97
LEU
197
B
ASN
198
n
98
ASN
198
B
PHE
199
n
99
PHE
199
B
0.1468
0.1639
0.1449
0.1619
0.1824
0.2002
2576
3326
5.0
5.0
51309
author_and_software_defined_assembly
PISA
2
dimeric
3620
-22
9890
A
ASP
60
A
O
ASP
60
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1058
H
O
HOH
1_555
94.7
A
ASP
60
A
O
ASP
60
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1082
H
O
HOH
1_555
76.6
A
HOH
1058
H
O
HOH
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1082
H
O
HOH
1_555
170.8
A
ASP
60
A
O
ASP
60
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1114
H
O
HOH
1_555
98.3
A
HOH
1058
H
O
HOH
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1114
H
O
HOH
1_555
76.4
A
HOH
1082
H
O
HOH
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1114
H
O
HOH
1_555
101.7
A
ASP
60
A
O
ASP
60
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1145
H
O
HOH
1_555
171.3
A
HOH
1058
H
O
HOH
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1145
H
O
HOH
1_555
90.2
A
HOH
1082
H
O
HOH
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1145
H
O
HOH
1_555
98.8
A
HOH
1114
H
O
HOH
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1145
H
O
HOH
1_555
89.8
A
ASP
60
A
O
ASP
60
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1180
H
O
HOH
1_555
96.7
A
HOH
1058
H
O
HOH
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1180
H
O
HOH
1_555
92.8
A
HOH
1082
H
O
HOH
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1180
H
O
HOH
1_555
91.1
A
HOH
1114
H
O
HOH
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1180
H
O
HOH
1_555
162.1
A
HOH
1145
H
O
HOH
1_555
A
NA
500
C
NA
NA
1_555
A
HOH
1180
H
O
HOH
1_555
75.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
197
B
O
LEU
97
B
O
ASN
198
B
O
ASN
98
A
N
THR
96
A
N
THR
96
A
N
LEU
97
A
N
LEU
97
B
O
ILE
103
B
O
ILE
3
A
N
LYS
43
A
N
LYS
43
A
O
GLN
58
A
O
GLN
58
A
N
ILE
66
A
N
ILE
66
A
O
HIS
69
A
O
HIS
69
A
O
LEU
76
A
O
LEU
76
A
N
THR
31
A
N
THR
31
A
N
ILE
32
A
N
ILE
32
A
O
ILE
84
A
O
ILE
84
A
O
ILE
85
A
O
ILE
85
A
N
LEU
23
A
N
LEU
23
A
O
LYS
20
A
O
LYS
20
A
N
ILE
13
A
N
ILE
13
A
N
LYS
14
A
N
LYS
14
A
O
GLU
65
A
O
GLU
65
B
N
LYS
145
B
N
LYS
45
B
O
VAL
156
B
O
VAL
56
B
N
ILE
166
B
N
ILE
66
B
O
HIS
169
B
O
HIS
69
B
O
LEU
176
B
O
LEU
76
B
N
ILE
133
B
N
ILE
33
B
N
ILE
132
B
N
ILE
32
B
O
ILE
184
B
O
ILE
84
B
O
ILE
185
B
O
ILE
85
B
N
LEU
123
B
N
LEU
23
B
O
LYS
120
B
O
LYS
20
B
N
ILE
113
B
N
ILE
13
B
N
LYS
114
B
N
LYS
14
B
O
GLU
165
B
O
GLU
65
1
15.28
1.40
123.60
138.88
A
A
A
CD
NE
CZ
ARG
ARG
ARG
57
57
57
A
A
A
N
1
4.51
0.50
120.30
124.81
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
108
108
108
N
1
-3.29
0.50
120.30
117.01
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
141
141
141
N
1
-5.24
0.80
121.30
116.06
B
B
B
CG
CD2
CE2
TYR
TYR
TYR
159
159
159
N
1
3.58
0.50
120.30
123.88
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
187
187
187
N
1
-3.32
0.50
120.30
116.98
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
187
187
187
N
conjugate gradient minimization
0.2002
0.1619
0.1639
0.1619
1.20
10.00
15883
3326
20162
5.0
91.6
RANDOM
1
FREE R
0.0
MOLECULAR REPLACEMENT
3NU3
Engh & Huber
15
1637.00
1674.81
1.20
10.00
150
1703
39
0
1514
0.013
0.031
0.000
0.0293
0.068
0.076
0.029
0.004
0.038
0.080
12.517
1.20
50
3NU4
66626
66626
0
0
0.081
1
6.1
91.6
0.442
1.20
1.24
2.5
4482
3.4
62.7
data collection
HKL-2000
phasing
AMoRE
refinement
SHELXL-97
data reduction
HKL-2000
data scaling
HKL-2000
Crystal Structure of HIV-1 Protease Mutant V32I with Antiviral Drug Amprenavir
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
3
N
N
5
N
N
5
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
1
6
A
GLN
92
A
GLN
92
HELX_P
A
GLY
94
A
GLY
94
5
2
3
B
GLY
186
B
GLY
86
HELX_P
B
ILE
193
B
ILE
93
1
3
8
metalc
2.430
A
ASP
60
A
O
ASP
60
1_555
A
NA
500
C
NA
NA
1_555
metalc
2.413
A
NA
500
C
NA
NA
1_555
A
HOH
1058
H
O
HOH
1_555
metalc
2.507
A
NA
500
C
NA
NA
1_555
A
HOH
1082
H
O
HOH
1_555
metalc
2.273
A
NA
500
C
NA
NA
1_555
A
HOH
1114
H
O
HOH
1_555
metalc
2.536
A
NA
500
C
NA
NA
1_555
A
HOH
1145
H
O
HOH
1_555
metalc
2.365
A
NA
500
C
NA
NA
1_555
A
HOH
1180
H
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
enzyme inhibition, aspartic protease, HIV/AIDS, conformational change, Amprenavir, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR complex
POL_HV1B1
UNP
1
501
P03366
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
501
599
3NU4
1
99
P03366
A
1
1
99
501
599
3NU4
101
199
P03366
B
1
1
99
1
GLN
engineered mutation
LYS
7
3NU4
A
P03366
UNP
507
7
1
VAL
engineered mutation
ILE
32
3NU4
A
P03366
UNP
532
32
1
LEU
engineered mutation
ILE
33
3NU4
A
P03366
UNP
533
33
1
LEU
engineered mutation
ILE
63
3NU4
A
P03366
UNP
563
63
1
CYS
engineered mutation
ALA
67
3NU4
A
P03366
UNP
567
67
1
CYS
engineered mutation
ALA
95
3NU4
A
P03366
UNP
595
95
2
GLN
engineered mutation
LYS
107
3NU4
B
P03366
UNP
507
7
2
VAL
engineered mutation
ILE
132
3NU4
B
P03366
UNP
532
32
2
LEU
engineered mutation
ILE
133
3NU4
B
P03366
UNP
533
33
2
LEU
engineered mutation
ILE
163
3NU4
B
P03366
UNP
563
63
2
CYS
engineered mutation
ALA
167
3NU4
B
P03366
UNP
567
67
2
CYS
engineered mutation
ALA
195
3NU4
B
P03366
UNP
595
95
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
THR
196
B
THR
96
B
ASN
198
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
102
B
GLN
2
B
ILE
103
B
ILE
3
A
TRP
42
A
TRP
42
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
THR
31
A
THR
31
A
ILE
33
A
ILE
33
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
LYS
143
B
LYS
43
B
GLY
149
B
GLY
49
B
GLY
152
B
GLY
52
B
ILE
166
B
ILE
66
B
HIS
169
B
HIS
69
B
VAL
177
B
VAL
77
B
ILE
132
B
ILE
32
B
ILE
133
B
ILE
33
B
ILE
184
B
ILE
84
B
ILE
185
B
ILE
85
B
GLN
118
B
GLN
18
B
LEU
124
B
LEU
24
B
LEU
110
B
LEU
10
B
ILE
115
B
ILE
15
B
GLY
152
B
GLY
52
B
ILE
166
B
ILE
66
BINDING SITE FOR RESIDUE NA A 500
A
NA
500
Software
6
BINDING SITE FOR RESIDUE CL A 501
A
CL
501
Software
3
BINDING SITE FOR RESIDUE 478 B 401
B
478
401
Software
17
BINDING SITE FOR RESIDUE CL B 502
B
CL
502
Software
1
BINDING SITE FOR RESIDUE CL B 503
B
CL
503
Software
3
A
ASP
60
A
ASP
60
6
1_555
A
HOH
1058
H
HOH
6
1_555
A
HOH
1082
H
HOH
6
1_555
A
HOH
1114
H
HOH
6
1_555
A
HOH
1145
H
HOH
6
1_555
A
HOH
1180
H
HOH
6
1_555
A
THR
74
A
THR
74
3
1_555
A
ASN
88
A
ASN
88
3
1_555
B
ARG
141
B
ARG
41
3
3_556
A
ASP
25
A
ASP
25
17
1_555
A
GLY
27
A
GLY
27
17
1_555
A
ALA
28
A
ALA
28
17
1_555
A
ASP
30
A
ASP
30
17
1_555
A
GLY
48
A
GLY
48
17
1_555
A
GLY
49
A
GLY
49
17
1_555
A
VAL
82
A
VAL
82
17
1_555
A
HOH
1047
H
HOH
17
1_555
B
ASP
125
B
ASP
25
17
1_555
B
GLY
127
B
GLY
27
17
1_555
B
ALA
128
B
ALA
28
17
1_555
B
ASP
129
B
ASP
29
17
1_555
B
ASP
130
B
ASP
30
17
1_555
B
GLY
148
B
GLY
48
17
1_555
B
GLY
149
B
GLY
49
17
1_555
B
ILE
150
B
ILE
50
17
1_555
B
HOH
1001
I
HOH
17
1_555
B
TRP
106
B
TRP
6
1
1_555
B
THR
174
B
THR
74
3
1_555
B
ASN
188
B
ASN
88
3
1_555
B
HOH
1057
I
HOH
3
1_555
18
P 21 21 2