0.008156
0.004709
0.000000
0.000000
0.009417
0.000000
0.000000
0.000000
0.021129
0.00000
0.00000
0.00000
Campobasso, N.
Ward, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
122.615
122.615
47.328
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C9 H9 N O
147.174
3,4-dihydroisoquinolin-1(2H)-one
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H8 N O6 P
185.072
n
PHOSPHOSERINE
PHOSPHONOSERINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
ACS Med Chem Lett
1948-5875
1
439
442
10.1021/ml100136n
24900229
Aminoindazole PDK1 Inhibitors: A Case Study in Fragment-Based Drug Discovery.
2010
100
1
CCD
2007-06-02
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
x-ray
1
0.99
1.0
22-BM
APS
0.99
SYNCHROTRON
APS BEAMLINE 22-BM
33107.754
PkB-like
UNP residues 65-350
1
man
polymer
92.094
GLYCEROL
4
syn
non-polymer
96.063
SULFATE ION
10
syn
non-polymer
147.174
3,4-dihydroisoquinolin-1(2H)-one
1
syn
non-polymer
18.015
water
135
nat
water
no
yes
QPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD
EKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSP
ESKQARAN(SEP)FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPK
ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL
QPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD
EKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSP
ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDL
VEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PkB-like 1
9606
Homo sapiens
10469
Baculovirus
1
3.10
60.29
sitting drop
9
2M Ammonium sulfate, 0.1M TRIS, pH 9, sitting drop, temperature 298K
298
citation
entity
repository
Initial release
Version format compliance
Data collection
Database references
Structure summary
1
0
2011-05-25
1
1
2011-07-13
1
2
2018-10-10
_citation.journal_abbrev
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_entity.formula_weight
RCSB
Y
RCSB
2010-07-07
REL
REL
GOL
GLYCEROL
SO4
SULFATE ION
JOZ
3,4-dihydroisoquinolin-1(2H)-one
HOH
water
GOL
359
2
GOL
GOL
359
A
GOL
360
2
GOL
GOL
360
A
GOL
363
2
GOL
GOL
363
A
GOL
365
2
GOL
GOL
365
A
SO4
366
3
SO4
SO4
366
A
SO4
368
3
SO4
SO4
368
A
SO4
369
3
SO4
SO4
369
A
SO4
370
3
SO4
SO4
370
A
SO4
371
3
SO4
SO4
371
A
SO4
372
3
SO4
SO4
372
A
SO4
1
3
SO4
SO4
1
A
SO4
3
3
SO4
SO4
3
A
SO4
4
3
SO4
SO4
4
A
SO4
5
3
SO4
SO4
5
A
JOZ
361
4
JOZ
JOZ
361
A
HOH
14
5
HOH
HOH
14
A
HOH
16
5
HOH
HOH
16
A
HOH
19
5
HOH
HOH
19
A
HOH
20
5
HOH
HOH
20
A
HOH
33
5
HOH
HOH
33
A
HOH
34
5
HOH
HOH
34
A
HOH
38
5
HOH
HOH
38
A
HOH
42
5
HOH
HOH
42
A
HOH
44
5
HOH
HOH
44
A
HOH
49
5
HOH
HOH
49
A
HOH
362
5
HOH
HOH
362
A
HOH
364
5
HOH
HOH
364
A
HOH
367
5
HOH
HOH
367
A
HOH
373
5
HOH
HOH
373
A
HOH
374
5
HOH
HOH
374
A
HOH
375
5
HOH
HOH
375
A
HOH
376
5
HOH
HOH
376
A
HOH
377
5
HOH
HOH
377
A
HOH
378
5
HOH
HOH
378
A
HOH
379
5
HOH
HOH
379
A
HOH
380
5
HOH
HOH
380
A
HOH
381
5
HOH
HOH
381
A
HOH
382
5
HOH
HOH
382
A
HOH
383
5
HOH
HOH
383
A
HOH
384
5
HOH
HOH
384
A
HOH
385
5
HOH
HOH
385
A
HOH
386
5
HOH
HOH
386
A
HOH
387
5
HOH
HOH
387
A
HOH
388
5
HOH
HOH
388
A
HOH
389
5
HOH
HOH
389
A
HOH
390
5
HOH
HOH
390
A
HOH
391
5
HOH
HOH
391
A
HOH
392
5
HOH
HOH
392
A
HOH
393
5
HOH
HOH
393
A
HOH
394
5
HOH
HOH
394
A
HOH
395
5
HOH
HOH
395
A
HOH
396
5
HOH
HOH
396
A
HOH
397
5
HOH
HOH
397
A
HOH
398
5
HOH
HOH
398
A
HOH
399
5
HOH
HOH
399
A
HOH
400
5
HOH
HOH
400
A
HOH
401
5
HOH
HOH
401
A
HOH
402
5
HOH
HOH
402
A
HOH
403
5
HOH
HOH
403
A
HOH
404
5
HOH
HOH
404
A
HOH
405
5
HOH
HOH
405
A
HOH
406
5
HOH
HOH
406
A
HOH
407
5
HOH
HOH
407
A
HOH
408
5
HOH
HOH
408
A
HOH
409
5
HOH
HOH
409
A
HOH
410
5
HOH
HOH
410
A
HOH
411
5
HOH
HOH
411
A
HOH
412
5
HOH
HOH
412
A
HOH
413
5
HOH
HOH
413
A
HOH
414
5
HOH
HOH
414
A
HOH
415
5
HOH
HOH
415
A
HOH
416
5
HOH
HOH
416
A
HOH
417
5
HOH
HOH
417
A
HOH
418
5
HOH
HOH
418
A
HOH
419
5
HOH
HOH
419
A
HOH
420
5
HOH
HOH
420
A
HOH
421
5
HOH
HOH
421
A
HOH
422
5
HOH
HOH
422
A
HOH
423
5
HOH
HOH
423
A
HOH
424
5
HOH
HOH
424
A
HOH
425
5
HOH
HOH
425
A
HOH
426
5
HOH
HOH
426
A
HOH
427
5
HOH
HOH
427
A
HOH
428
5
HOH
HOH
428
A
HOH
429
5
HOH
HOH
429
A
HOH
430
5
HOH
HOH
430
A
HOH
431
5
HOH
HOH
431
A
HOH
432
5
HOH
HOH
432
A
HOH
433
5
HOH
HOH
433
A
HOH
434
5
HOH
HOH
434
A
HOH
435
5
HOH
HOH
435
A
HOH
436
5
HOH
HOH
436
A
HOH
437
5
HOH
HOH
437
A
HOH
438
5
HOH
HOH
438
A
HOH
439
5
HOH
HOH
439
A
HOH
440
5
HOH
HOH
440
A
HOH
441
5
HOH
HOH
441
A
HOH
442
5
HOH
HOH
442
A
HOH
443
5
HOH
HOH
443
A
HOH
444
5
HOH
HOH
444
A
HOH
445
5
HOH
HOH
445
A
HOH
446
5
HOH
HOH
446
A
HOH
447
5
HOH
HOH
447
A
HOH
448
5
HOH
HOH
448
A
HOH
449
5
HOH
HOH
449
A
HOH
450
5
HOH
HOH
450
A
HOH
451
5
HOH
HOH
451
A
HOH
452
5
HOH
HOH
452
A
HOH
453
5
HOH
HOH
453
A
HOH
454
5
HOH
HOH
454
A
HOH
455
5
HOH
HOH
455
A
HOH
456
5
HOH
HOH
456
A
HOH
457
5
HOH
HOH
457
A
HOH
458
5
HOH
HOH
458
A
HOH
459
5
HOH
HOH
459
A
HOH
460
5
HOH
HOH
460
A
HOH
461
5
HOH
HOH
461
A
HOH
462
5
HOH
HOH
462
A
HOH
463
5
HOH
HOH
463
A
HOH
464
5
HOH
HOH
464
A
HOH
465
5
HOH
HOH
465
A
HOH
466
5
HOH
HOH
466
A
HOH
467
5
HOH
HOH
467
A
HOH
468
5
HOH
HOH
468
A
HOH
469
5
HOH
HOH
469
A
HOH
470
5
HOH
HOH
470
A
HOH
471
5
HOH
HOH
471
A
HOH
472
5
HOH
HOH
472
A
HOH
473
5
HOH
HOH
473
A
HOH
474
5
HOH
HOH
474
A
HOH
475
5
HOH
HOH
475
A
HOH
476
5
HOH
HOH
476
A
HOH
477
5
HOH
HOH
477
A
HOH
478
5
HOH
HOH
478
A
HOH
479
5
HOH
HOH
479
A
HOH
480
5
HOH
HOH
480
A
HOH
481
5
HOH
HOH
481
A
HOH
482
5
HOH
HOH
482
A
HOH
483
5
HOH
HOH
483
A
HOH
484
5
HOH
HOH
484
A
HOH
485
5
HOH
HOH
485
A
HOH
486
5
HOH
HOH
486
A
HOH
487
5
HOH
HOH
487
A
HOH
488
5
HOH
HOH
488
A
HOH
489
5
HOH
HOH
489
A
HOH
490
5
HOH
HOH
490
A
HOH
491
5
HOH
HOH
491
A
HOH
492
5
HOH
HOH
492
A
HOH
493
5
HOH
HOH
493
A
HOH
494
5
HOH
HOH
494
A
GLN
73
n
1
GLN
73
A
PRO
74
n
2
PRO
74
A
ARG
75
n
3
ARG
75
A
LYS
76
n
4
LYS
76
A
LYS
77
n
5
LYS
77
A
ARG
78
n
6
ARG
78
A
PRO
79
n
7
PRO
79
A
GLU
80
n
8
GLU
80
A
ASP
81
n
9
ASP
81
A
PHE
82
n
10
PHE
82
A
LYS
83
n
11
LYS
83
A
PHE
84
n
12
PHE
84
A
GLY
85
n
13
GLY
85
A
LYS
86
n
14
LYS
86
A
ILE
87
n
15
ILE
87
A
LEU
88
n
16
LEU
88
A
GLY
89
n
17
GLY
89
A
GLU
90
n
18
GLU
90
A
GLY
91
n
19
GLY
91
A
SER
92
n
20
SER
92
A
PHE
93
n
21
PHE
93
A
SER
94
n
22
SER
94
A
THR
95
n
23
THR
95
A
VAL
96
n
24
VAL
96
A
VAL
97
n
25
VAL
97
A
LEU
98
n
26
LEU
98
A
ALA
99
n
27
ALA
99
A
ARG
100
n
28
ARG
100
A
GLU
101
n
29
GLU
101
A
LEU
102
n
30
LEU
102
A
ALA
103
n
31
ALA
103
A
THR
104
n
32
THR
104
A
SER
105
n
33
SER
105
A
ARG
106
n
34
ARG
106
A
GLU
107
n
35
GLU
107
A
TYR
108
n
36
TYR
108
A
ALA
109
n
37
ALA
109
A
ILE
110
n
38
ILE
110
A
LYS
111
n
39
LYS
111
A
ILE
112
n
40
ILE
112
A
LEU
113
n
41
LEU
113
A
GLU
114
n
42
GLU
114
A
LYS
115
n
43
LYS
115
A
ARG
116
n
44
ARG
116
A
HIS
117
n
45
HIS
117
A
ILE
118
n
46
ILE
118
A
ILE
119
n
47
ILE
119
A
LYS
120
n
48
LYS
120
A
GLU
121
n
49
GLU
121
A
ASN
122
n
50
ASN
122
A
LYS
123
n
51
LYS
123
A
VAL
124
n
52
VAL
124
A
PRO
125
n
53
PRO
125
A
TYR
126
n
54
TYR
126
A
VAL
127
n
55
VAL
127
A
THR
128
n
56
THR
128
A
ARG
129
n
57
ARG
129
A
GLU
130
n
58
GLU
130
A
ARG
131
n
59
ARG
131
A
ASP
132
n
60
ASP
132
A
VAL
133
n
61
VAL
133
A
MET
134
n
62
MET
134
A
SER
135
n
63
SER
135
A
ARG
136
n
64
ARG
136
A
LEU
137
n
65
LEU
137
A
ASP
138
n
66
ASP
138
A
HIS
139
n
67
HIS
139
A
PRO
140
n
68
PRO
140
A
PHE
141
n
69
PHE
141
A
PHE
142
n
70
PHE
142
A
VAL
143
n
71
VAL
143
A
LYS
144
n
72
LYS
144
A
LEU
145
n
73
LEU
145
A
TYR
146
n
74
TYR
146
A
PHE
147
n
75
PHE
147
A
THR
148
n
76
THR
148
A
PHE
149
n
77
PHE
149
A
GLN
150
n
78
GLN
150
A
ASP
151
n
79
ASP
151
A
ASP
152
n
80
ASP
152
A
GLU
153
n
81
GLU
153
A
LYS
154
n
82
LYS
154
A
LEU
155
n
83
LEU
155
A
TYR
156
n
84
TYR
156
A
PHE
157
n
85
PHE
157
A
GLY
158
n
86
GLY
158
A
LEU
159
n
87
LEU
159
A
SER
160
n
88
SER
160
A
TYR
161
n
89
TYR
161
A
ALA
162
n
90
ALA
162
A
LYS
163
n
91
LYS
163
A
ASN
164
n
92
ASN
164
A
GLY
165
n
93
GLY
165
A
GLU
166
n
94
GLU
166
A
LEU
167
n
95
LEU
167
A
LEU
168
n
96
LEU
168
A
LYS
169
n
97
LYS
169
A
TYR
170
n
98
TYR
170
A
ILE
171
n
99
ILE
171
A
ARG
172
n
100
ARG
172
A
LYS
173
n
101
LYS
173
A
ILE
174
n
102
ILE
174
A
GLY
175
n
103
GLY
175
A
SER
176
n
104
SER
176
A
PHE
177
n
105
PHE
177
A
ASP
178
n
106
ASP
178
A
GLU
179
n
107
GLU
179
A
THR
180
n
108
THR
180
A
CYS
181
n
109
CYS
181
A
THR
182
n
110
THR
182
A
ARG
183
n
111
ARG
183
A
PHE
184
n
112
PHE
184
A
TYR
185
n
113
TYR
185
A
THR
186
n
114
THR
186
A
ALA
187
n
115
ALA
187
A
GLU
188
n
116
GLU
188
A
ILE
189
n
117
ILE
189
A
VAL
190
n
118
VAL
190
A
SER
191
n
119
SER
191
A
ALA
192
n
120
ALA
192
A
LEU
193
n
121
LEU
193
A
GLU
194
n
122
GLU
194
A
TYR
195
n
123
TYR
195
A
LEU
196
n
124
LEU
196
A
HIS
197
n
125
HIS
197
A
GLY
198
n
126
GLY
198
A
LYS
199
n
127
LYS
199
A
GLY
200
n
128
GLY
200
A
ILE
201
n
129
ILE
201
A
ILE
202
n
130
ILE
202
A
HIS
203
n
131
HIS
203
A
ARG
204
n
132
ARG
204
A
ASP
205
n
133
ASP
205
A
LEU
206
n
134
LEU
206
A
LYS
207
n
135
LYS
207
A
PRO
208
n
136
PRO
208
A
GLU
209
n
137
GLU
209
A
ASN
210
n
138
ASN
210
A
ILE
211
n
139
ILE
211
A
LEU
212
n
140
LEU
212
A
LEU
213
n
141
LEU
213
A
ASN
214
n
142
ASN
214
A
GLU
215
n
143
GLU
215
A
ASP
216
n
144
ASP
216
A
MET
217
n
145
MET
217
A
HIS
218
n
146
HIS
218
A
ILE
219
n
147
ILE
219
A
GLN
220
n
148
GLN
220
A
ILE
221
n
149
ILE
221
A
THR
222
n
150
THR
222
A
ASP
223
n
151
ASP
223
A
PHE
224
n
152
PHE
224
A
GLY
225
n
153
GLY
225
A
THR
226
n
154
THR
226
A
ALA
227
n
155
ALA
227
A
LYS
228
n
156
LYS
228
A
VAL
229
n
157
VAL
229
A
LEU
230
n
158
LEU
230
A
SER
231
n
159
SER
231
A
n
160
232
A
n
161
233
A
n
162
234
A
n
163
235
A
n
164
236
A
n
165
237
A
n
166
238
A
n
167
239
A
n
168
240
A
SEP
241
n
169
SEP
241
A
PHE
242
n
170
PHE
242
A
VAL
243
n
171
VAL
243
A
GLY
244
n
172
GLY
244
A
THR
245
n
173
THR
245
A
ALA
246
n
174
ALA
246
A
GLN
247
n
175
GLN
247
A
TYR
248
n
176
TYR
248
A
VAL
249
n
177
VAL
249
A
SER
250
n
178
SER
250
A
PRO
251
n
179
PRO
251
A
GLU
252
n
180
GLU
252
A
LEU
253
n
181
LEU
253
A
LEU
254
n
182
LEU
254
A
THR
255
n
183
THR
255
A
GLU
256
n
184
GLU
256
A
LYS
257
n
185
LYS
257
A
SER
258
n
186
SER
258
A
ALA
259
n
187
ALA
259
A
CYS
260
n
188
CYS
260
A
LYS
261
n
189
LYS
261
A
SER
262
n
190
SER
262
A
SER
263
n
191
SER
263
A
ASP
264
n
192
ASP
264
A
LEU
265
n
193
LEU
265
A
TRP
266
n
194
TRP
266
A
ALA
267
n
195
ALA
267
A
LEU
268
n
196
LEU
268
A
GLY
269
n
197
GLY
269
A
CYS
270
n
198
CYS
270
A
ILE
271
n
199
ILE
271
A
ILE
272
n
200
ILE
272
A
TYR
273
n
201
TYR
273
A
GLN
274
n
202
GLN
274
A
LEU
275
n
203
LEU
275
A
VAL
276
n
204
VAL
276
A
ALA
277
n
205
ALA
277
A
GLY
278
n
206
GLY
278
A
LEU
279
n
207
LEU
279
A
PRO
280
n
208
PRO
280
A
PRO
281
n
209
PRO
281
A
PHE
282
n
210
PHE
282
A
ARG
283
n
211
ARG
283
A
ALA
284
n
212
ALA
284
A
GLY
285
n
213
GLY
285
A
ASN
286
n
214
ASN
286
A
GLU
287
n
215
GLU
287
A
TYR
288
n
216
TYR
288
A
LEU
289
n
217
LEU
289
A
ILE
290
n
218
ILE
290
A
PHE
291
n
219
PHE
291
A
GLN
292
n
220
GLN
292
A
LYS
293
n
221
LYS
293
A
ILE
294
n
222
ILE
294
A
ILE
295
n
223
ILE
295
A
LYS
296
n
224
LYS
296
A
LEU
297
n
225
LEU
297
A
GLU
298
n
226
GLU
298
A
TYR
299
n
227
TYR
299
A
ASP
300
n
228
ASP
300
A
PHE
301
n
229
PHE
301
A
PRO
302
n
230
PRO
302
A
GLU
303
n
231
GLU
303
A
LYS
304
n
232
LYS
304
A
PHE
305
n
233
PHE
305
A
PHE
306
n
234
PHE
306
A
PRO
307
n
235
PRO
307
A
LYS
308
n
236
LYS
308
A
ALA
309
n
237
ALA
309
A
ARG
310
n
238
ARG
310
A
ASP
311
n
239
ASP
311
A
LEU
312
n
240
LEU
312
A
VAL
313
n
241
VAL
313
A
GLU
314
n
242
GLU
314
A
LYS
315
n
243
LYS
315
A
LEU
316
n
244
LEU
316
A
LEU
317
n
245
LEU
317
A
VAL
318
n
246
VAL
318
A
LEU
319
n
247
LEU
319
A
ASP
320
n
248
ASP
320
A
ALA
321
n
249
ALA
321
A
THR
322
n
250
THR
322
A
LYS
323
n
251
LYS
323
A
ARG
324
n
252
ARG
324
A
LEU
325
n
253
LEU
325
A
GLY
326
n
254
GLY
326
A
CYS
327
n
255
CYS
327
A
GLU
328
n
256
GLU
328
A
GLU
329
n
257
GLU
329
A
MET
330
n
258
MET
330
A
GLU
331
n
259
GLU
331
A
GLY
332
n
260
GLY
332
A
TYR
333
n
261
TYR
333
A
GLY
334
n
262
GLY
334
A
PRO
335
n
263
PRO
335
A
LEU
336
n
264
LEU
336
A
LYS
337
n
265
LYS
337
A
ALA
338
n
266
ALA
338
A
HIS
339
n
267
HIS
339
A
PRO
340
n
268
PRO
340
A
PHE
341
n
269
PHE
341
A
PHE
342
n
270
PHE
342
A
GLU
343
n
271
GLU
343
A
SER
344
n
272
SER
344
A
VAL
345
n
273
VAL
345
A
THR
346
n
274
THR
346
A
TRP
347
n
275
TRP
347
A
GLU
348
n
276
GLU
348
A
ASN
349
n
277
ASN
349
A
LEU
350
n
278
LEU
350
A
HIS
351
n
279
HIS
351
A
GLN
352
n
280
GLN
352
A
GLN
353
n
281
GLN
353
A
THR
354
n
282
THR
354
A
PRO
355
n
283
PRO
355
A
PRO
356
n
284
PRO
356
A
LYS
357
n
285
LYS
357
A
LEU
358
n
286
LEU
358
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
7540
-302
24380
A
SEP
241
PHOSPHOSERINE
A
SEP
169
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_555
x-y,-y,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
15.7760000000
A
N
GLY
85
A
N
GLY
13
A
O
LEU
98
A
O
LEU
26
A
N
THR
95
A
N
THR
23
A
O
ILE
112
A
O
ILE
40
A
N
LEU
113
A
N
LEU
41
A
O
LEU
155
A
O
LEU
83
A
O
GLY
158
A
O
GLY
86
A
N
TYR
146
A
N
TYR
74
A
N
GLY
165
A
N
GLY
93
A
O
LEU
213
A
O
LEU
141
A
N
LEU
212
A
N
LEU
140
A
O
GLN
220
A
O
GLN
148
A
N
ILE
202
A
N
ILE
130
A
O
LYS
228
A
O
LYS
156
1
A
HOH
485
Q
HOH
1
A
CG
GLN
73
A
CG
GLN
1
1
Y
1
A
CD
GLN
73
A
CD
GLN
1
1
Y
1
A
OE1
GLN
73
A
OE1
GLN
1
1
Y
1
A
NE2
GLN
73
A
NE2
GLN
1
1
Y
1
A
CG
ARG
75
A
CG
ARG
3
1
Y
1
A
CD
ARG
75
A
CD
ARG
3
1
Y
1
A
NE
ARG
75
A
NE
ARG
3
1
Y
1
A
CZ
ARG
75
A
CZ
ARG
3
1
Y
1
A
NH1
ARG
75
A
NH1
ARG
3
1
Y
1
A
NH2
ARG
75
A
NH2
ARG
3
1
Y
1
A
CG
GLU
303
A
CG
GLU
231
1
Y
1
A
CD
GLU
303
A
CD
GLU
231
1
Y
1
A
OE1
GLU
303
A
OE1
GLU
231
1
Y
1
A
OE2
GLU
303
A
OE2
GLU
231
1
Y
1
A
CG
LYS
304
A
CG
LYS
232
1
Y
1
A
CD
LYS
304
A
CD
LYS
232
1
Y
1
A
CE
LYS
304
A
CE
LYS
232
1
Y
1
A
NZ
LYS
304
A
NZ
LYS
232
1
Y
1
A
CG
GLU
348
A
CG
GLU
276
1
Y
1
A
CD
GLU
348
A
CD
GLU
276
1
Y
1
A
OE1
GLU
348
A
OE1
GLU
276
1
Y
1
A
OE2
GLU
348
A
OE2
GLU
276
1
Y
1
A
CG
LYS
357
A
CG
LYS
285
1
Y
1
A
CD
LYS
357
A
CD
LYS
285
1
Y
1
A
CE
LYS
357
A
CE
LYS
285
1
Y
1
A
NZ
LYS
357
A
NZ
LYS
285
1
Y
1
A
PRO
232
A
PRO
160
1
Y
1
A
GLU
233
A
GLU
161
1
Y
1
A
SER
234
A
SER
162
1
Y
1
A
LYS
235
A
LYS
163
1
Y
1
A
GLN
236
A
GLN
164
1
Y
1
A
ALA
237
A
ALA
165
1
Y
1
A
ARG
238
A
ARG
166
1
Y
1
A
ALA
239
A
ALA
167
1
Y
1
A
ASN
240
A
ASN
168
1
Y
1
A
ASP
151
-124.31
-163.69
1
A
ARG
204
84.01
-8.40
1
A
ASP
205
-147.31
41.65
1
A
ASP
223
77.67
76.35
1
A
GLU
256
-147.96
-17.81
1
A
PHE
305
-39.60
122.24
144.750
31.1634
10.580
3.2870
0.0000
-0.0000
3.2870
-0.0000
-6.5740
0.2387
0.1888
1.9803
37.4635
1266
25023
5.0600
45.1600
1.000
0.500
0.8126
1
MOLECULAR REPLACEMENT
ml
52.0300
0.3820
1.9803
37.4635
135
2463
85
0
2243
0.560
1.000
0.003
1.000
0.044
1.000
9.361
1.000
0.002
1.000
4.083
1.000
0.2629
1.9942
192
48
17.0000
0.2777
2.0085
210
48
18.0000
0.2595
2.0233
227
48
20.0000
0.2505
2.0385
304
48
25.0000
0.2500
2.0542
278
48
24.0000
0.2695
2.0704
301
48
27.0000
0.2566
2.0871
323
48
27.0000
0.2308
2.1043
345
48
31.0000
0.2548
2.1221
371
48
32.0000
0.2442
2.1406
385
48
34.0000
0.2605
2.1597
419
48
35.0000
0.2259
2.1795
410
48
36.0000
0.2246
2.2001
422
48
37.0000
0.2195
2.2214
468
48
40.0000
0.2328
2.2436
489
48
43.0000
0.2262
2.2668
520
48
44.0000
0.2211
2.2909
489
48
45.0000
0.2127
2.3161
531
48
45.0000
0.1970
2.3424
548
48
47.0000
0.2166
2.3699
545
48
48.0000
0.2128
2.3988
544
48
48.0000
0.2076
2.4292
554
48
49.0000
0.1966
2.4611
571
48
49.0000
0.2079
2.4948
588
48
49.0000
0.1925
2.5305
549
48
49.0000
0.1946
2.5682
540
48
48.0000
0.2027
2.6084
560
48
48.0000
0.2045
2.6511
566
48
49.0000
0.1890
2.6968
549
48
48.0000
0.1891
2.7458
585
48
49.0000
0.1825
2.7986
579
48
50.0000
0.1849
2.8557
552
48
49.0000
0.1910
2.9178
560
48
48.0000
0.2148
2.9857
585
48
50.0000
0.1837
3.0603
549
48
49.0000
0.1800
3.1430
566
48
49.0000
0.1768
3.2354
572
48
50.0000
0.1727
3.3398
573
48
50.0000
0.1809
3.4591
584
48
50.0000
0.1702
3.5975
572
48
49.0000
0.1551
3.7611
572
48
49.0000
0.1422
3.9591
584
48
50.0000
0.1401
4.2069
546
48
49.0000
0.1396
4.5312
591
48
50.0000
0.1560
4.9863
584
48
51.0000
0.1918
5.7056
596
48
51.0000
0.1923
7.1802
585
48
51.0000
0.1804
37.4702
624
48
54.0000
1.980
50.000
3NUU
25044
0.099
1.080
1
8.700
8.800
87.200
0.473
1.980
2.050
1219
0.921
1
3.200
42.800
0.447
2.050
2.130
1749
0.964
1
4.300
61.700
0.371
2.130
2.230
2168
1.012
1
5.200
76.100
0.341
2.230
2.350
2612
1.024
1
6.200
91.900
0.320
2.350
2.490
2818
1.007
1
7.800
98.600
0.296
2.490
2.690
2849
0.982
1
10.300
100.000
0.182
2.690
2.960
2857
0.982
1
11.100
100.000
0.107
2.960
3.390
2896
1.009
1
11.200
100.000
0.064
3.390
4.260
2894
1.435
1
11.200
100.000
0.041
4.260
50.000
2982
1.112
1
10.800
99.800
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
PkB-like
phosphoinositide-dependent kinase-1 (PDK1) with fragment11
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
ARG
78
A
ARG
6
HELX_P
A
GLU
80
A
GLU
8
5
1
3
A
LYS
115
A
LYS
43
HELX_P
A
GLU
121
A
GLU
49
1
2
7
A
LYS
123
A
LYS
51
HELX_P
A
LEU
137
A
LEU
65
1
3
15
A
LEU
167
A
LEU
95
HELX_P
A
GLY
175
A
GLY
103
1
4
9
A
ASP
178
A
ASP
106
HELX_P
A
LYS
199
A
LYS
127
1
5
22
A
THR
245
A
THR
173
HELX_P
A
VAL
249
A
VAL
177
5
6
5
A
SER
250
A
SER
178
HELX_P
A
GLU
256
A
GLU
184
1
7
7
A
CYS
260
A
CYS
188
HELX_P
A
GLY
278
A
GLY
206
1
8
19
A
ASN
286
A
ASN
214
HELX_P
A
LYS
296
A
LYS
224
1
9
11
A
PHE
306
A
PHE
234
HELX_P
A
LEU
317
A
LEU
245
1
10
12
A
ASP
320
A
ASP
248
HELX_P
A
ARG
324
A
ARG
252
5
11
5
A
CYS
327
A
CYS
255
HELX_P
A
GLU
331
A
GLU
259
5
12
5
A
GLY
332
A
GLY
260
HELX_P
A
ALA
338
A
ALA
266
1
13
7
A
HIS
339
A
HIS
267
HELX_P
A
GLU
343
A
GLU
271
5
14
5
A
ASN
349
A
ASN
277
HELX_P
A
GLN
353
A
GLN
281
5
15
5
covale
1.329
A
SEP
241
A
C
SEP
169
1_555
A
PHE
242
A
N
PHE
170
1_555
TRANSFERASE
Kinase domain, TRANSFERASE
Q9UPJ8_HUMAN
UNP
1
65
Q9UPJ8
QPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD
EKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSP
ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDL
VEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL
65
350
3NUU
73
358
Q9UPJ8
A
1
1
286
5
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
82
A
PHE
10
A
GLY
89
A
GLY
17
A
THR
95
A
THR
23
A
GLU
101
A
GLU
29
A
GLU
107
A
GLU
35
A
GLU
114
A
GLU
42
A
LYS
154
A
LYS
82
A
LEU
159
A
LEU
87
A
LEU
145
A
LEU
73
A
GLN
150
A
GLN
78
A
GLY
165
A
GLY
93
A
GLU
166
A
GLU
94
A
ILE
211
A
ILE
139
A
LEU
213
A
LEU
141
A
ILE
219
A
ILE
147
A
ILE
221
A
ILE
149
A
ILE
201
A
ILE
129
A
ILE
202
A
ILE
130
A
LYS
228
A
LYS
156
A
VAL
229
A
VAL
157
BINDING SITE FOR RESIDUE GOL A 359
Software
9
BINDING SITE FOR RESIDUE GOL A 360
Software
7
BINDING SITE FOR RESIDUE GOL A 363
Software
6
BINDING SITE FOR RESIDUE GOL A 365
Software
10
BINDING SITE FOR RESIDUE SO4 A 366
Software
5
BINDING SITE FOR RESIDUE SO4 A 368
Software
4
BINDING SITE FOR RESIDUE SO4 A 369
Software
6
BINDING SITE FOR RESIDUE SO4 A 370
Software
4
BINDING SITE FOR RESIDUE SO4 A 371
Software
5
BINDING SITE FOR RESIDUE SO4 A 372
Software
2
BINDING SITE FOR RESIDUE SO4 A 1
Software
2
BINDING SITE FOR RESIDUE SO4 A 3
Software
7
BINDING SITE FOR RESIDUE SO4 A 4
Software
1
BINDING SITE FOR RESIDUE SO4 A 5
Software
7
BINDING SITE FOR RESIDUE JOZ A 361
Software
8
A
SO4
3
M
SO4
9
1_555
A
ARG
106
A
ARG
34
9
1_555
A
GLU
107
A
GLU
35
9
1_555
A
TYR
108
A
TYR
36
9
1_555
A
TYR
146
A
TYR
74
9
1_555
A
SER
160
A
SER
88
9
1_555
A
TYR
161
A
TYR
89
9
1_555
A
SO4
370
I
SO4
9
1_555
A
SO4
371
J
SO4
9
1_555
A
PHE
82
A
PHE
10
7
1_554
A
LYS
83
A
LYS
11
7
1_554
A
PHE
84
A
PHE
12
7
1_554
A
GLU
194
A
GLU
122
7
1_555
A
GLY
334
A
GLY
262
7
1_555
A
LYS
337
A
LYS
265
7
1_555
A
HOH
467
Q
HOH
7
1_555
A
PRO
79
A
PRO
7
6
1_554
A
LYS
154
A
LYS
82
6
1_554
A
TYR
156
A
TYR
84
6
1_554
A
GLU
331
A
GLU
259
6
1_555
A
GLY
332
A
GLY
260
6
1_555
A
HOH
468
Q
HOH
6
1_555
A
ALA
103
A
ALA
31
10
5_555
A
THR
104
A
THR
32
10
5_555
A
SER
105
A
SER
33
10
5_555
A
HIS
139
A
HIS
67
10
1_555
A
SER
191
A
SER
119
10
1_555
A
TRP
347
A
TRP
275
10
1_555
A
GLU
348
A
GLU
276
10
1_555
A
ASN
349
A
ASN
277
10
1_555
A
LEU
350
A
LEU
278
10
1_555
A
HIS
351
A
HIS
279
10
1_555
A
LYS
83
A
LYS
11
5
1_554
A
THR
346
A
THR
274
5
1_555
A
TRP
347
A
TRP
275
5
1_555
A
GLU
348
A
GLU
276
5
1_555
A
HOH
456
Q
HOH
5
1_555
A
ARG
75
A
ARG
3
4
5_555
A
ARG
136
A
ARG
64
4
1_555
A
LYS
199
A
LYS
127
4
1_555
A
HOH
446
Q
HOH
4
1_555
A
LYS
76
A
LYS
4
6
1_555
A
THR
148
A
THR
76
6
1_555
A
PHE
149
A
PHE
77
6
1_555
A
GLN
150
A
GLN
78
6
1_555
A
HOH
410
Q
HOH
6
1_555
A
HOH
445
Q
HOH
6
1_555
A
SO4
3
M
SO4
4
1_555
A
ARG
106
A
ARG
34
4
1_555
A
HIS
351
A
HIS
279
4
5_555
A
GOL
359
B
GOL
4
1_555
A
HOH
44
Q
HOH
5
1_555
A
TYR
146
A
TYR
74
5
1_555
A
SER
160
A
SER
88
5
1_555
A
ASN
214
A
ASN
142
5
1_555
A
GOL
359
B
GOL
5
1_555
A
ARG
310
A
ARG
238
2
1_555
A
HOH
486
Q
HOH
2
1_555
A
TYR
299
A
TYR
227
2
1_555
A
HOH
416
Q
HOH
2
1_555
A
ARG
106
A
ARG
34
7
1_555
A
GLU
107
A
GLU
35
7
1_555
A
HIS
351
A
HIS
279
7
5_555
A
GLN
352
A
GLN
280
7
5_555
A
GOL
359
B
GOL
7
1_555
A
SO4
370
I
SO4
7
1_555
A
HOH
473
Q
HOH
7
5_555
A
ARG
100
A
ARG
28
1
1_555
A
SER
92
A
SER
20
7
1_555
A
PHE
93
A
PHE
21
7
1_555
A
SER
94
A
SER
22
7
1_555
A
LYS
111
A
LYS
39
7
1_555
A
TYR
126
A
TYR
54
7
1_555
A
GLU
130
A
GLU
58
7
1_555
A
HOH
493
Q
HOH
7
1_555
A
LEU
88
A
LEU
16
8
1_555
A
ALA
109
A
ALA
37
8
1_555
A
LEU
159
A
LEU
87
8
1_555
A
SER
160
A
SER
88
8
1_555
A
ALA
162
A
ALA
90
8
1_555
A
LEU
212
A
LEU
140
8
1_555
A
THR
222
A
THR
150
8
1_555
A
HOH
394
Q
HOH
8
1_555
154
P 32 2 1