0.014123 0.008154 0.000000 0.000000 0.016308 0.000000 0.000000 0.000000 0.019917 0.00000 0.00000 0.00000 Yoshida, H. Kamitori, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 70.805 70.805 50.209 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O6 180.156 beta-D-galactopyranose beta-D-galactose; D-galactose; galactose D-saccharide, beta linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-alpha-D-glucopyranose N-acetyl-alpha-D-glucosamine; 2-acetamido-2-deoxy-alpha-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE D-saccharide, alpha linking Ni 2 58.693 NICKEL (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 R C N 89 R C N 90 S C N 91 R C N 92 R C N 93 N C N 94 N O N 95 N O N 96 N O N 97 N O N 98 N O N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N N N 113 S C N 114 N C N 115 N O N 116 N C N 117 N C N 118 N C N 119 N O N 120 N N N 121 N O N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N N N 133 S C N 134 N C N 135 N O N 136 N C N 137 N C N 138 N C N 139 N O N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 N C N 153 N C N 154 N O N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 N C Y 166 N C Y 167 N N Y 168 N C Y 169 N C Y 170 N N N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 S C N 190 N C N 191 N C N 192 N C N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N N N 208 S C N 209 N C N 210 N O N 211 N C N 212 N C N 213 N C N 214 N C N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N N N 230 S C N 231 N C N 232 N O N 233 N C N 234 N C N 235 N C N 236 N C N 237 N N N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N S N 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 S C N 275 R C N 276 R C N 277 S C N 278 R C N 279 N C N 280 N C N 281 N C N 282 N O N 283 N O N 284 N O N 285 N O N 286 N O N 287 N N N 288 N O N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N NI N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C Y 310 N C Y 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C N 333 N C N 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N O N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 R C N 364 N O N 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N N Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N C N 414 N O N 415 N O N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N N N 428 S C N 429 N C N 430 N O N 431 N C N 432 N C N 433 N C N 434 N O N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing Y 164 N sing Y 165 N doub Y 166 N doub N 167 N sing Y 168 N sing N 169 N sing Y 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing Y 302 N doub Y 303 N sing Y 304 N sing N 305 N sing Y 306 N doub N 307 N sing Y 308 N doub N 309 N sing Y 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing Y 371 N doub Y 372 N sing Y 373 N sing N 374 N sing Y 375 N doub Y 376 N sing Y 377 N sing N 378 N sing Y 379 N sing Y 380 N doub N 381 N sing Y 382 N doub N 383 N sing Y 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing Y 399 N doub Y 400 N sing Y 401 N sing N 402 N sing Y 403 N doub N 404 N sing Y 405 N doub N 406 N sing Y 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N doub N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 285 36969 36976 10.1074/jbc.M110.163402 20861009 X-ray structures of human galectin-9 C-terminal domain in complexes with a biantennary oligosaccharide and sialyllactose 2010 10.2210/pdb3nv2/pdb pdb_00003nv2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2009-11-28 ADSC QUANTUM 210r SINGLE WAVELENGTH M x-ray 1 1.0 1.0 AR-NW12A Photon Factory 1.0 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 15729.982 Galectin 9 short isoform variant C-terminal carbohydrate recognition domain, residues 186-323 1 man polymer 383.349 beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose 1 man branched 58.693 NICKEL (II) ION 1 syn non-polymer 18.015 water 140 nat water Galectin-9 N-acetyl-alpha-lactosamine no no YPHPAYPMPFITTILGGLYPSKSILLSGTVLPSAQRFHINLCSGNHIAFHLNPRFDENAVVRNTQIDNSWGSEERSLPRK MPFVRGQSFSVWILCEAHCLKVAVDGQHLFEYYHRLRNLPTINRLEVGGDIQLTHVQT YPHPAYPMPFITTILGGLYPSKSILLSGTVLPSAQRFHINLCSGNHIAFHLNPRFDENAVVRNTQIDNSWGSEERSLPRK MPFVRGQSFSVWILCEAHCLKVAVDGQHLFEYYHRLRNLPTINRLEVGGDIQLTHVQT A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) PLASMID pGEX-4T-2 1 2.31 46.75 VAPOR DIFFUSION, HANGING DROP 8.5 20% PEG MME 2000, 0.1M Tris pH 8.5, 0.01M nickel chloride hexahydrate, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 atom_site chem_comp entity entity_name_com pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule_features pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_conn_angle pdbx_struct_special_symmetry struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Atomic model Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2010-09-22 1 1 2011-07-13 2 0 2020-07-29 2 1 2023-11-01 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.occupancy _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_special_symmetry.label_asym_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession L NAG 502 n B NDG 1 L GAL 501 n B GAL 2 DGalpb b-D-galactopyranose b-D-Galp Gal DGlcpNAca N-acetyl-a-D-glucopyranosamine a-D-GlcpNAc GlcNAc The same protein without ligand The same protein with biantennary oligosaccharide The same protein with Sialyllactose RCSB Y PDBJ 2010-07-07 REL REL oligosaccharide DGalpb1-4DGlcpNAca1-ROH 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,2,1/[a2122h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2/a4-b1 2 PDB2Glycan 1.1.0 WURCS [][a-D-GlcpNAc]{[(4+1)][b-D-Galp]{}} 2 PDB-CARE LINUCS C1 O4 GAL NDG 2 1 2 O1 HO4 sing n n NI NICKEL (II) ION HOH water THE LIGANDS GAL AND NDG FORM N-ACETYLLACTOSAMINE. 3KOE PDB entry 3KOE PDB experimental model Glycan component oligosaccharide N-acetyl-alpha-lactosamine Oligosaccharide NI2 401 3 NI NI 401 A HOH 1 4 HOH HOH 1 A HOH 2 4 HOH HOH 2 A HOH 3 4 HOH HOH 3 A HOH 4 4 HOH HOH 4 A HOH 5 4 HOH HOH 5 A HOH 6 4 HOH HOH 6 A HOH 7 4 HOH HOH 7 A HOH 8 4 HOH HOH 8 A HOH 9 4 HOH HOH 9 A HOH 10 4 HOH HOH 10 A HOH 11 4 HOH HOH 11 A HOH 12 4 HOH HOH 12 A HOH 13 4 HOH HOH 13 A HOH 14 4 HOH HOH 14 A HOH 15 4 HOH HOH 15 A HOH 16 4 HOH HOH 16 A HOH 17 4 HOH HOH 17 A HOH 18 4 HOH HOH 18 A HOH 19 4 HOH HOH 19 A HOH 20 4 HOH HOH 20 A HOH 21 4 HOH HOH 21 A HOH 22 4 HOH HOH 22 A HOH 23 4 HOH HOH 23 A HOH 24 4 HOH HOH 24 A HOH 25 4 HOH HOH 25 A HOH 26 4 HOH HOH 26 A HOH 27 4 HOH HOH 27 A HOH 28 4 HOH HOH 28 A HOH 29 4 HOH HOH 29 A HOH 30 4 HOH HOH 30 A HOH 31 4 HOH HOH 31 A HOH 32 4 HOH HOH 32 A HOH 33 4 HOH HOH 33 A HOH 34 4 HOH HOH 34 A HOH 35 4 HOH HOH 35 A HOH 36 4 HOH HOH 36 A HOH 37 4 HOH HOH 37 A HOH 38 4 HOH HOH 38 A HOH 39 4 HOH HOH 39 A HOH 40 4 HOH HOH 40 A HOH 41 4 HOH HOH 41 A HOH 42 4 HOH HOH 42 A HOH 43 4 HOH HOH 43 A HOH 44 4 HOH HOH 44 A HOH 45 4 HOH HOH 45 A HOH 46 4 HOH HOH 46 A HOH 47 4 HOH HOH 47 A HOH 48 4 HOH HOH 48 A HOH 49 4 HOH HOH 49 A HOH 50 4 HOH HOH 50 A HOH 51 4 HOH HOH 51 A HOH 52 4 HOH HOH 52 A HOH 53 4 HOH HOH 53 A HOH 54 4 HOH HOH 54 A HOH 55 4 HOH HOH 55 A HOH 56 4 HOH HOH 56 A HOH 57 4 HOH HOH 57 A HOH 58 4 HOH HOH 58 A HOH 59 4 HOH HOH 59 A HOH 60 4 HOH HOH 60 A HOH 61 4 HOH HOH 61 A HOH 62 4 HOH HOH 62 A HOH 63 4 HOH HOH 63 A HOH 64 4 HOH HOH 64 A HOH 65 4 HOH HOH 65 A HOH 66 4 HOH HOH 66 A HOH 67 4 HOH HOH 67 A HOH 68 4 HOH HOH 68 A HOH 69 4 HOH HOH 69 A HOH 70 4 HOH HOH 70 A HOH 71 4 HOH HOH 71 A HOH 72 4 HOH HOH 72 A HOH 73 4 HOH HOH 73 A HOH 74 4 HOH HOH 74 A HOH 75 4 HOH HOH 75 A HOH 76 4 HOH HOH 76 A HOH 77 4 HOH HOH 77 A HOH 78 4 HOH HOH 78 A HOH 79 4 HOH HOH 79 A HOH 80 4 HOH HOH 80 A HOH 81 4 HOH HOH 81 A HOH 82 4 HOH HOH 82 A HOH 83 4 HOH HOH 83 A HOH 84 4 HOH HOH 84 A HOH 85 4 HOH HOH 85 A HOH 86 4 HOH HOH 86 A HOH 87 4 HOH HOH 87 A HOH 88 4 HOH HOH 88 A HOH 89 4 HOH HOH 89 A HOH 90 4 HOH HOH 90 A HOH 91 4 HOH HOH 91 A HOH 92 4 HOH HOH 92 A HOH 93 4 HOH HOH 93 A HOH 94 4 HOH HOH 94 A HOH 95 4 HOH HOH 95 A HOH 96 4 HOH HOH 96 A HOH 97 4 HOH HOH 97 A HOH 98 4 HOH HOH 98 A HOH 99 4 HOH HOH 99 A HOH 100 4 HOH HOH 100 A HOH 101 4 HOH HOH 101 A HOH 102 4 HOH HOH 102 A HOH 103 4 HOH HOH 103 A HOH 104 4 HOH HOH 104 A HOH 105 4 HOH HOH 105 A HOH 106 4 HOH HOH 106 A HOH 107 4 HOH HOH 107 A HOH 108 4 HOH HOH 108 A HOH 109 4 HOH HOH 109 A HOH 110 4 HOH HOH 110 A HOH 111 4 HOH HOH 111 A HOH 112 4 HOH HOH 112 A HOH 113 4 HOH HOH 113 A HOH 114 4 HOH HOH 114 A HOH 115 4 HOH HOH 115 A HOH 116 4 HOH HOH 116 A HOH 117 4 HOH HOH 117 A HOH 118 4 HOH HOH 118 A HOH 119 4 HOH HOH 119 A HOH 120 4 HOH HOH 120 A HOH 121 4 HOH HOH 121 A HOH 122 4 HOH HOH 122 A HOH 123 4 HOH HOH 123 A HOH 124 4 HOH HOH 124 A HOH 125 4 HOH HOH 125 A HOH 126 4 HOH HOH 126 A HOH 127 4 HOH HOH 127 A HOH 128 4 HOH HOH 128 A HOH 129 4 HOH HOH 129 A HOH 130 4 HOH HOH 130 A HOH 131 4 HOH HOH 131 A HOH 132 4 HOH HOH 132 A HOH 133 4 HOH HOH 133 A HOH 134 4 HOH HOH 134 A HOH 135 4 HOH HOH 135 A HOH 136 4 HOH HOH 136 A HOH 137 4 HOH HOH 137 A HOH 138 4 HOH HOH 138 A HOH 139 4 HOH HOH 139 A HOH 140 4 HOH HOH 140 A n 1 186 A n 2 187 A HIS 188 n 3 HIS 188 A PRO 189 n 4 PRO 189 A ALA 190 n 5 ALA 190 A TYR 191 n 6 TYR 191 A PRO 192 n 7 PRO 192 A MET 193 n 8 MET 193 A PRO 194 n 9 PRO 194 A PHE 195 n 10 PHE 195 A ILE 196 n 11 ILE 196 A THR 197 n 12 THR 197 A THR 198 n 13 THR 198 A ILE 199 n 14 ILE 199 A LEU 200 n 15 LEU 200 A GLY 201 n 16 GLY 201 A GLY 202 n 17 GLY 202 A LEU 203 n 18 LEU 203 A TYR 204 n 19 TYR 204 A PRO 205 n 20 PRO 205 A SER 206 n 21 SER 206 A LYS 207 n 22 LYS 207 A SER 208 n 23 SER 208 A ILE 209 n 24 ILE 209 A LEU 210 n 25 LEU 210 A LEU 211 n 26 LEU 211 A SER 212 n 27 SER 212 A GLY 213 n 28 GLY 213 A THR 214 n 29 THR 214 A VAL 215 n 30 VAL 215 A LEU 216 n 31 LEU 216 A PRO 217 n 32 PRO 217 A SER 218 n 33 SER 218 A ALA 219 n 34 ALA 219 A GLN 220 n 35 GLN 220 A ARG 221 n 36 ARG 221 A PHE 222 n 37 PHE 222 A HIS 223 n 38 HIS 223 A ILE 224 n 39 ILE 224 A ASN 225 n 40 ASN 225 A LEU 226 n 41 LEU 226 A CYS 227 n 42 CYS 227 A SER 228 n 43 SER 228 A GLY 229 n 44 GLY 229 A ASN 230 n 45 ASN 230 A HIS 231 n 46 HIS 231 A ILE 232 n 47 ILE 232 A ALA 233 n 48 ALA 233 A PHE 234 n 49 PHE 234 A HIS 235 n 50 HIS 235 A LEU 236 n 51 LEU 236 A ASN 237 n 52 ASN 237 A PRO 238 n 53 PRO 238 A ARG 239 n 54 ARG 239 A PHE 240 n 55 PHE 240 A ASP 241 n 56 ASP 241 A GLU 242 n 57 GLU 242 A ASN 243 n 58 ASN 243 A ALA 244 n 59 ALA 244 A VAL 245 n 60 VAL 245 A VAL 246 n 61 VAL 246 A ARG 247 n 62 ARG 247 A ASN 248 n 63 ASN 248 A THR 249 n 64 THR 249 A GLN 250 n 65 GLN 250 A ILE 251 n 66 ILE 251 A ASP 252 n 67 ASP 252 A ASN 253 n 68 ASN 253 A SER 254 n 69 SER 254 A TRP 255 n 70 TRP 255 A GLY 256 n 71 GLY 256 A SER 257 n 72 SER 257 A GLU 258 n 73 GLU 258 A GLU 259 n 74 GLU 259 A ARG 260 n 75 ARG 260 A SER 261 n 76 SER 261 A LEU 262 n 77 LEU 262 A PRO 263 n 78 PRO 263 A ARG 264 n 79 ARG 264 A LYS 265 n 80 LYS 265 A MET 266 n 81 MET 266 A PRO 267 n 82 PRO 267 A PHE 268 n 83 PHE 268 A VAL 269 n 84 VAL 269 A ARG 270 n 85 ARG 270 A GLY 271 n 86 GLY 271 A GLN 272 n 87 GLN 272 A SER 273 n 88 SER 273 A PHE 274 n 89 PHE 274 A SER 275 n 90 SER 275 A VAL 276 n 91 VAL 276 A TRP 277 n 92 TRP 277 A ILE 278 n 93 ILE 278 A LEU 279 n 94 LEU 279 A CYS 280 n 95 CYS 280 A GLU 281 n 96 GLU 281 A ALA 282 n 97 ALA 282 A HIS 283 n 98 HIS 283 A CYS 284 n 99 CYS 284 A LEU 285 n 100 LEU 285 A LYS 286 n 101 LYS 286 A VAL 287 n 102 VAL 287 A ALA 288 n 103 ALA 288 A VAL 289 n 104 VAL 289 A ASP 290 n 105 ASP 290 A GLY 291 n 106 GLY 291 A GLN 292 n 107 GLN 292 A HIS 293 n 108 HIS 293 A LEU 294 n 109 LEU 294 A PHE 295 n 110 PHE 295 A GLU 296 n 111 GLU 296 A TYR 297 n 112 TYR 297 A TYR 298 n 113 TYR 298 A HIS 299 n 114 HIS 299 A ARG 300 n 115 ARG 300 A LEU 301 n 116 LEU 301 A ARG 302 n 117 ARG 302 A ASN 303 n 118 ASN 303 A LEU 304 n 119 LEU 304 A PRO 305 n 120 PRO 305 A THR 306 n 121 THR 306 A ILE 307 n 122 ILE 307 A ASN 308 n 123 ASN 308 A ARG 309 n 124 ARG 309 A LEU 310 n 125 LEU 310 A GLU 311 n 126 GLU 311 A VAL 312 n 127 VAL 312 A GLY 313 n 128 GLY 313 A GLY 314 n 129 GLY 314 A ASP 315 n 130 ASP 315 A ILE 316 n 131 ILE 316 A GLN 317 n 132 GLN 317 A LEU 318 n 133 LEU 318 A THR 319 n 134 THR 319 A HIS 320 n 135 HIS 320 A VAL 321 n 136 VAL 321 A GLN 322 n 137 GLN 322 A THR 323 n 138 THR 323 A software_defined_assembly PISA 3 trimeric 2780 -22 17740 A HOH 16 D O HOH 1_555 A NI 401 C NI NI 1_555 A HIS 320 A NE2 HIS 135 1_555 99.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -y+1,x-y+1,z crystal symmetry operation 35.4025000000 61.3189287150 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_565 -x+y,-x+1,z crystal symmetry operation -35.4025000000 61.3189287150 0.0000000000 A N THR 197 A N THR 12 A O LEU 310 A O LEU 125 A O ARG 309 A O ARG 124 A N CYS 227 A N CYS 42 A N SER 228 A N SER 43 A O HIS 231 A O HIS 46 A N ARG 239 A N ARG 54 A O ALA 244 A O ALA 59 A N ILE 251 A N ILE 66 A O SER 254 A O SER 69 A O LEU 294 A O LEU 109 A N VAL 287 A N VAL 102 A O LYS 286 A O LYS 101 A N LEU 279 A N LEU 94 A O VAL 276 A O VAL 91 A N LEU 211 A N LEU 26 A N THR 214 A N THR 29 A O GLN 317 A O GLN 132 1 A NI 401 C NI 1 A TYR 186 A TYR 1 1 Y 1 A PRO 187 A PRO 2 1 Y 1 A A O O ASN HOH 243 67 2.07 1_555 6_654 1 A A O O HOH HOH 16 16 2.17 1_555 3_565 1 A SER 206 86.32 -6.05 1 A ASP 252 65.09 -122.27 protein_rep.param protein.top carbohydrate.param carbohydrate.top ion.param ion.top water_rep.param water.top 1.56 2.79 0.00 1.56 0.00 -3.12 0.231 0.009 0.179 0.185 0.179 2.34 38.85 659 5989 5989 11.0 97.5 RANDOM 40669.38 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB entry 3KOE Engh & Huber FLAT MODEL 60.142 0.364624 0.30 0.21 5.00 0.25 0.12 2.34 38.85 140 1257 27 0 1090 0.005 1.5 27.2 0.76 0.256 0.025 0.171 2.49 108 829 829 6 11.5 92.8 24.1 2.34 50 3NV2 6135 0.0 0.0 0.075 1 8.7 68565 11.2 100.0 0.385 2.34 2.38 7.4 11.2 100 data collection ADSC Quantum phasing MOLREP refinement CNS 1.1 data reduction HKL-2000 data scaling HKL-2000 Crystal structure of human galectin-9 C-terminal CRD in complex with N-acetyllactosamine 1 N N 2 N N 3 N N 4 N N AUTHOR STATES THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN. A ASN 303 A ASN 118 HELX_P A ILE 307 A ILE 122 5 1 5 covale 1.388 both B NDG 1 B O4 NDG 1_555 B GAL 2 B C1 GAL 1_555 metalc 2.183 A HOH 16 D O HOH 1_555 A NI 401 C NI NI 1_555 metalc 2.246 A HIS 320 A NE2 HIS 135 1_555 A NI 401 C NI NI 1_555 SUGAR BINDING PROTEIN Sugar binding, Sugar Binding Protein A MET 193 A MET 8 1 A PRO 194 A PRO 9 0.08 Q53FQ0_HUMAN UNP 1 186 Q53FQ0 YPHPAYPMPFITTILGGLYPSKSILLSGTVLPSAQRFHINLCSGNHIAFHLNPRFDENAVVRNTQIDNSWGSEERSLPRK MPFVRGQSFSVWILCEAHCLKVAVDGQHLFEYYHRLRNLPTINRLEVGGDIQLTHVQT 186 323 3NV2 186 323 Q53FQ0 A 1 1 138 6 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A PHE 195 A PHE 10 A THR 198 A THR 13 A ARG 309 A ARG 124 A GLY 314 A GLY 129 A PHE 222 A PHE 37 A SER 228 A SER 43 A HIS 231 A HIS 46 A ARG 239 A ARG 54 A ALA 244 A ALA 59 A ILE 251 A ILE 66 A SER 254 A SER 69 A TRP 255 A TRP 70 A GLN 292 A GLN 107 A TYR 298 A TYR 113 A CYS 284 A CYS 99 A VAL 289 A VAL 104 A SER 273 A SER 88 A CYS 280 A CYS 95 A SER 208 A SER 23 A VAL 215 A VAL 30 A ILE 316 A ILE 131 A GLN 322 A GLN 137 173 P 63