data_3NVG # _entry.id 3NVG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NVG pdb_00003nvg 10.2210/pdb3nvg/pdb RCSB RCSB060328 ? ? WWPDB D_1000060328 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 3NVG _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-07-08 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3NVE 'MMHFGN hexapeptide (residues 138-143) from golden hamster prion protein' unspecified PDB 3NVF 'IIHFGS hexapeptide (residues 138-143) from human prion protein' unspecified PDB 3NVH 'MIHFGND peptide(residues 137-143) from mouse prion protein' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Apostol, M.I.' 1 'Sawaya, M.R.' 2 'Eisenberg, D.' 3 # _citation.id primary _citation.title 'Atomic structures suggest determinants of transmission barriers in Mammalian prion disease.' _citation.journal_abbrev Biochemistry _citation.journal_volume 50 _citation.page_first 2456 _citation.page_last 2463 _citation.year 2011 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21323366 _citation.pdbx_database_id_DOI 10.1021/bi101803k # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Apostol, M.I.' 1 ? primary 'Wiltzius, J.J.' 2 ? primary 'Sawaya, M.R.' 3 ? primary 'Cascio, D.' 4 ? primary 'Eisenberg, D.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Major prion protein' 718.844 1 ? ? ? ? 2 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PrP, PrP27-30, PrP33-35C' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MIHFGN _entity_poly.pdbx_seq_one_letter_code_can MIHFGN _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 HIS n 1 4 PHE n 1 5 GLY n 1 6 ASN n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Mus musculus' _pdbx_entity_src_syn.organism_common_name mouse _pdbx_entity_src_syn.ncbi_taxonomy_id 10090 _pdbx_entity_src_syn.details 'MIHFGN (residues 137-142) from mouse prion' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 HIS 3 3 3 HIS HIS A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 ASN 6 6 6 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 7 1 HOH HOH A . B 2 HOH 2 8 2 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 1.3.2 'Wed Feb 15 11:59:26 2006' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _cell.length_a 27.280 _cell.length_b 4.771 _cell.length_c 31.476 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3NVG _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3NVG _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3NVG _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.42 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 13.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '100mM HEPES 7.5, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2006-11-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0048 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_wavelength_list 1.0048 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA # _reflns.entry_id 3NVG _reflns.d_resolution_high 1.48 _reflns.d_resolution_low 90.000 _reflns.number_obs 801 _reflns.pdbx_Rmerge_I_obs 0.154 _reflns.pdbx_netI_over_sigmaI 7.000 _reflns.pdbx_chi_squared 1.074 _reflns.pdbx_redundancy 5.300 _reflns.percent_possible_obs 90.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.48 1.620 ? ? ? 0.452 ? ? 1.208 3.400 ? 130 68.800 ? 1 1.620 1.780 ? ? ? 0.324 ? ? 1.115 4.800 ? 132 95.700 ? 2 1.780 2.040 ? ? ? 0.233 ? ? 1.091 6.300 ? 158 97.500 ? 3 2.040 2.560 ? ? ? 0.176 ? ? 1.068 6.100 ? 180 94.700 ? 4 2.560 90.000 ? ? ? 0.108 ? ? 0.993 5.300 ? 201 99.500 ? 5 # _refine.entry_id 3NVG _refine.ls_d_res_high 1.48 _refine.ls_d_res_low 20.62 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 90.9600 _refine.ls_number_reflns_obs 785 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1835 _refine.ls_R_factor_R_work 0.1808 _refine.ls_wR_factor_R_work 0.1907 _refine.ls_R_factor_R_free 0.2049 _refine.ls_wR_factor_R_free 0.2215 _refine.ls_percent_reflns_R_free 11.6000 _refine.ls_number_reflns_R_free 91 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 8.4854 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.4500 _refine.aniso_B[2][2] -0.6800 _refine.aniso_B[3][3] 0.2300 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9620 _refine.correlation_coeff_Fo_to_Fc_free 0.9390 _refine.overall_SU_R_Cruickshank_DPI 0.0940 _refine.overall_SU_R_free 0.0892 _refine.pdbx_overall_ESU_R_Free 0.0890 _refine.overall_SU_ML 0.0450 _refine.overall_SU_B 1.1920 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.9018 _refine.B_iso_max 53.970 _refine.B_iso_min 3.060 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 50 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 52 _refine_hist.d_res_high 1.48 _refine_hist.d_res_low 20.62 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 51 0.013 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 32 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 67 1.346 1.867 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 77 0.560 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5 7.932 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 3 42.478 23.333 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 8 12.239 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 6 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 56 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 12 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 29 0.685 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 12 0.154 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 45 1.356 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 22 2.713 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 22 4.507 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.48 _refine_ls_shell.d_res_low 1.6520 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 75.0000 _refine_ls_shell.number_reflns_R_work 159 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2190 _refine_ls_shell.R_factor_R_free 0.2760 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 183 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3NVG _struct.title 'MIHFGN segment 137-142 from mouse prion' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NVG _struct_keywords.text 'amyloid-like protofibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRIO_MOUSE _struct_ref.pdbx_db_accession P04925 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MIHFGN _struct_ref.pdbx_align_begin 137 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NVG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P04925 _struct_ref_seq.db_align_beg 137 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 142 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.5420000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.7710000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.7710000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -9.5420000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 3_475 -x-1,y+5/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 -27.2800000000 0.0000000000 1.0000000000 0.0000000000 11.9275000000 0.0000000000 0.0000000000 -1.0000000000 15.7380000000 7 'crystal symmetry operation' 3_465 -x-1,y+3/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 -27.2800000000 0.0000000000 1.0000000000 0.0000000000 7.1565000000 0.0000000000 0.0000000000 -1.0000000000 15.7380000000 8 'crystal symmetry operation' 3_455 -x-1,y+1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 -27.2800000000 0.0000000000 1.0000000000 0.0000000000 2.3855000000 0.0000000000 0.0000000000 -1.0000000000 15.7380000000 9 'crystal symmetry operation' 3_445 -x-1,y-1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 -27.2800000000 0.0000000000 1.0000000000 0.0000000000 -2.3855000000 0.0000000000 0.0000000000 -1.0000000000 15.7380000000 10 'crystal symmetry operation' 3_435 -x-1,y-3/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 -27.2800000000 0.0000000000 1.0000000000 0.0000000000 -7.1565000000 0.0000000000 0.0000000000 -1.0000000000 15.7380000000 # _struct_biol.id 1 _struct_biol.details ? # _pdbx_phasing_MR.entry_id 3NVG _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 15.740 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 15.740 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLY N N N N 18 GLY CA C N N 19 GLY C C N N 20 GLY O O N N 21 GLY OXT O N N 22 GLY H H N N 23 GLY H2 H N N 24 GLY HA2 H N N 25 GLY HA3 H N N 26 GLY HXT H N N 27 HIS N N N N 28 HIS CA C N S 29 HIS C C N N 30 HIS O O N N 31 HIS CB C N N 32 HIS CG C Y N 33 HIS ND1 N Y N 34 HIS CD2 C Y N 35 HIS CE1 C Y N 36 HIS NE2 N Y N 37 HIS OXT O N N 38 HIS H H N N 39 HIS H2 H N N 40 HIS HA H N N 41 HIS HB2 H N N 42 HIS HB3 H N N 43 HIS HD1 H N N 44 HIS HD2 H N N 45 HIS HE1 H N N 46 HIS HE2 H N N 47 HIS HXT H N N 48 HOH O O N N 49 HOH H1 H N N 50 HOH H2 H N N 51 ILE N N N N 52 ILE CA C N S 53 ILE C C N N 54 ILE O O N N 55 ILE CB C N S 56 ILE CG1 C N N 57 ILE CG2 C N N 58 ILE CD1 C N N 59 ILE OXT O N N 60 ILE H H N N 61 ILE H2 H N N 62 ILE HA H N N 63 ILE HB H N N 64 ILE HG12 H N N 65 ILE HG13 H N N 66 ILE HG21 H N N 67 ILE HG22 H N N 68 ILE HG23 H N N 69 ILE HD11 H N N 70 ILE HD12 H N N 71 ILE HD13 H N N 72 ILE HXT H N N 73 MET N N N N 74 MET CA C N S 75 MET C C N N 76 MET O O N N 77 MET CB C N N 78 MET CG C N N 79 MET SD S N N 80 MET CE C N N 81 MET OXT O N N 82 MET H H N N 83 MET H2 H N N 84 MET HA H N N 85 MET HB2 H N N 86 MET HB3 H N N 87 MET HG2 H N N 88 MET HG3 H N N 89 MET HE1 H N N 90 MET HE2 H N N 91 MET HE3 H N N 92 MET HXT H N N 93 PHE N N N N 94 PHE CA C N S 95 PHE C C N N 96 PHE O O N N 97 PHE CB C N N 98 PHE CG C Y N 99 PHE CD1 C Y N 100 PHE CD2 C Y N 101 PHE CE1 C Y N 102 PHE CE2 C Y N 103 PHE CZ C Y N 104 PHE OXT O N N 105 PHE H H N N 106 PHE H2 H N N 107 PHE HA H N N 108 PHE HB2 H N N 109 PHE HB3 H N N 110 PHE HD1 H N N 111 PHE HD2 H N N 112 PHE HE1 H N N 113 PHE HE2 H N N 114 PHE HZ H N N 115 PHE HXT H N N 116 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLY N CA sing N N 17 GLY N H sing N N 18 GLY N H2 sing N N 19 GLY CA C sing N N 20 GLY CA HA2 sing N N 21 GLY CA HA3 sing N N 22 GLY C O doub N N 23 GLY C OXT sing N N 24 GLY OXT HXT sing N N 25 HIS N CA sing N N 26 HIS N H sing N N 27 HIS N H2 sing N N 28 HIS CA C sing N N 29 HIS CA CB sing N N 30 HIS CA HA sing N N 31 HIS C O doub N N 32 HIS C OXT sing N N 33 HIS CB CG sing N N 34 HIS CB HB2 sing N N 35 HIS CB HB3 sing N N 36 HIS CG ND1 sing Y N 37 HIS CG CD2 doub Y N 38 HIS ND1 CE1 doub Y N 39 HIS ND1 HD1 sing N N 40 HIS CD2 NE2 sing Y N 41 HIS CD2 HD2 sing N N 42 HIS CE1 NE2 sing Y N 43 HIS CE1 HE1 sing N N 44 HIS NE2 HE2 sing N N 45 HIS OXT HXT sing N N 46 HOH O H1 sing N N 47 HOH O H2 sing N N 48 ILE N CA sing N N 49 ILE N H sing N N 50 ILE N H2 sing N N 51 ILE CA C sing N N 52 ILE CA CB sing N N 53 ILE CA HA sing N N 54 ILE C O doub N N 55 ILE C OXT sing N N 56 ILE CB CG1 sing N N 57 ILE CB CG2 sing N N 58 ILE CB HB sing N N 59 ILE CG1 CD1 sing N N 60 ILE CG1 HG12 sing N N 61 ILE CG1 HG13 sing N N 62 ILE CG2 HG21 sing N N 63 ILE CG2 HG22 sing N N 64 ILE CG2 HG23 sing N N 65 ILE CD1 HD11 sing N N 66 ILE CD1 HD12 sing N N 67 ILE CD1 HD13 sing N N 68 ILE OXT HXT sing N N 69 MET N CA sing N N 70 MET N H sing N N 71 MET N H2 sing N N 72 MET CA C sing N N 73 MET CA CB sing N N 74 MET CA HA sing N N 75 MET C O doub N N 76 MET C OXT sing N N 77 MET CB CG sing N N 78 MET CB HB2 sing N N 79 MET CB HB3 sing N N 80 MET CG SD sing N N 81 MET CG HG2 sing N N 82 MET CG HG3 sing N N 83 MET SD CE sing N N 84 MET CE HE1 sing N N 85 MET CE HE2 sing N N 86 MET CE HE3 sing N N 87 MET OXT HXT sing N N 88 PHE N CA sing N N 89 PHE N H sing N N 90 PHE N H2 sing N N 91 PHE CA C sing N N 92 PHE CA CB sing N N 93 PHE CA HA sing N N 94 PHE C O doub N N 95 PHE C OXT sing N N 96 PHE CB CG sing N N 97 PHE CB HB2 sing N N 98 PHE CB HB3 sing N N 99 PHE CG CD1 doub Y N 100 PHE CG CD2 sing Y N 101 PHE CD1 CE1 sing Y N 102 PHE CD1 HD1 sing N N 103 PHE CD2 CE2 doub Y N 104 PHE CD2 HD2 sing N N 105 PHE CE1 CZ doub Y N 106 PHE CE1 HE1 sing N N 107 PHE CE2 CZ sing Y N 108 PHE CE2 HE2 sing N N 109 PHE CZ HZ sing N N 110 PHE OXT HXT sing N N 111 # _atom_sites.entry_id 3NVG _atom_sites.fract_transf_matrix[1][1] 0.036657 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.209600 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031770 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . MET A 1 1 ? -13.617 -1.968 0.011 1.00 5.99 ? 1 MET A N 1 ATOM 2 C CA . MET A 1 1 ? -12.315 -2.459 0.552 1.00 5.37 ? 1 MET A CA 1 ATOM 3 C C . MET A 1 1 ? -12.059 -1.849 1.902 1.00 5.07 ? 1 MET A C 1 ATOM 4 O O . MET A 1 1 ? -12.171 -0.636 2.069 1.00 5.39 ? 1 MET A O 1 ATOM 5 C CB . MET A 1 1 ? -11.146 -2.105 -0.377 1.00 6.02 ? 1 MET A CB 1 ATOM 6 C CG . MET A 1 1 ? -9.830 -2.625 0.151 1.00 7.88 ? 1 MET A CG 1 ATOM 7 S SD . MET A 1 1 ? -8.355 -2.030 -0.725 1.00 15.51 ? 1 MET A SD 1 ATOM 8 C CE . MET A 1 1 ? -8.673 -2.736 -2.319 1.00 14.12 ? 1 MET A CE 1 ATOM 9 N N . ILE A 1 2 ? -11.728 -2.702 2.865 1.00 4.07 ? 2 ILE A N 1 ATOM 10 C CA . ILE A 1 2 ? -11.159 -2.241 4.126 1.00 4.11 ? 2 ILE A CA 1 ATOM 11 C C . ILE A 1 2 ? -9.762 -2.813 4.206 1.00 4.38 ? 2 ILE A C 1 ATOM 12 O O . ILE A 1 2 ? -9.594 -4.018 4.139 1.00 4.77 ? 2 ILE A O 1 ATOM 13 C CB . ILE A 1 2 ? -11.992 -2.696 5.318 1.00 3.83 ? 2 ILE A CB 1 ATOM 14 C CG1 . ILE A 1 2 ? -13.366 -2.028 5.283 1.00 4.39 ? 2 ILE A CG1 1 ATOM 15 C CG2 . ILE A 1 2 ? -11.198 -2.434 6.631 1.00 4.52 ? 2 ILE A CG2 1 ATOM 16 C CD1 . ILE A 1 2 ? -14.404 -2.700 6.223 1.00 6.50 ? 2 ILE A CD1 1 ATOM 17 N N . HIS A 1 3 ? -8.768 -1.929 4.308 1.00 4.50 ? 3 HIS A N 1 ATOM 18 C CA . HIS A 1 3 ? -7.384 -2.326 4.238 1.00 5.48 ? 3 HIS A CA 1 ATOM 19 C C . HIS A 1 3 ? -6.660 -1.746 5.429 1.00 5.24 ? 3 HIS A C 1 ATOM 20 O O . HIS A 1 3 ? -6.635 -0.540 5.590 1.00 5.63 ? 3 HIS A O 1 ATOM 21 C CB . HIS A 1 3 ? -6.737 -1.786 2.965 1.00 6.64 ? 3 HIS A CB 1 ATOM 22 C CG . HIS A 1 3 ? -5.252 -1.929 2.975 1.00 10.18 ? 3 HIS A CG 1 ATOM 23 N ND1 . HIS A 1 3 ? -4.397 -0.861 3.112 1.00 14.30 ? 3 HIS A ND1 1 ATOM 24 C CD2 . HIS A 1 3 ? -4.475 -3.030 2.985 1.00 13.92 ? 3 HIS A CD2 1 ATOM 25 C CE1 . HIS A 1 3 ? -3.148 -1.294 3.130 1.00 14.50 ? 3 HIS A CE1 1 ATOM 26 N NE2 . HIS A 1 3 ? -3.169 -2.611 3.059 1.00 16.15 ? 3 HIS A NE2 1 ATOM 27 N N . PHE A 1 4 ? -6.075 -2.619 6.240 1.00 4.07 ? 4 PHE A N 1 ATOM 28 C CA . PHE A 1 4 ? -5.226 -2.214 7.359 1.00 3.81 ? 4 PHE A CA 1 ATOM 29 C C . PHE A 1 4 ? -3.870 -2.851 7.171 1.00 3.06 ? 4 PHE A C 1 ATOM 30 O O . PHE A 1 4 ? -3.775 -4.060 7.186 1.00 3.81 ? 4 PHE A O 1 ATOM 31 C CB . PHE A 1 4 ? -5.812 -2.697 8.686 1.00 4.00 ? 4 PHE A CB 1 ATOM 32 C CG . PHE A 1 4 ? -6.853 -1.798 9.248 1.00 6.31 ? 4 PHE A CG 1 ATOM 33 C CD1 . PHE A 1 4 ? -6.588 -1.011 10.365 1.00 6.52 ? 4 PHE A CD1 1 ATOM 34 C CD2 . PHE A 1 4 ? -8.094 -1.704 8.644 1.00 10.00 ? 4 PHE A CD2 1 ATOM 35 C CE1 . PHE A 1 4 ? -7.541 -0.174 10.882 1.00 7.62 ? 4 PHE A CE1 1 ATOM 36 C CE2 . PHE A 1 4 ? -9.065 -0.858 9.168 1.00 12.21 ? 4 PHE A CE2 1 ATOM 37 C CZ . PHE A 1 4 ? -8.784 -0.094 10.286 1.00 10.60 ? 4 PHE A CZ 1 ATOM 38 N N . GLY A 1 5 ? -2.823 -2.047 7.017 1.00 3.53 ? 5 GLY A N 1 ATOM 39 C CA . GLY A 1 5 ? -1.473 -2.574 6.924 1.00 4.31 ? 5 GLY A CA 1 ATOM 40 C C . GLY A 1 5 ? -0.761 -1.935 5.765 1.00 5.12 ? 5 GLY A C 1 ATOM 41 O O . GLY A 1 5 ? -0.738 -0.721 5.670 1.00 6.02 ? 5 GLY A O 1 ATOM 42 N N . ASN A 1 6 ? -0.195 -2.765 4.894 1.00 5.74 ? 6 ASN A N 1 ATOM 43 C CA . ASN A 1 6 ? 0.520 -2.292 3.702 1.00 5.84 ? 6 ASN A CA 1 ATOM 44 C C . ASN A 1 6 ? -0.002 -2.991 2.467 1.00 6.96 ? 6 ASN A C 1 ATOM 45 O O . ASN A 1 6 ? 0.322 -2.567 1.363 1.00 8.45 ? 6 ASN A O 1 ATOM 46 C CB . ASN A 1 6 ? 2.009 -2.594 3.809 1.00 5.65 ? 6 ASN A CB 1 ATOM 47 C CG . ASN A 1 6 ? 2.617 -2.053 5.053 1.00 6.40 ? 6 ASN A CG 1 ATOM 48 O OD1 . ASN A 1 6 ? 2.993 -2.813 5.962 1.00 7.19 ? 6 ASN A OD1 1 ATOM 49 N ND2 . ASN A 1 6 ? 2.707 -0.752 5.135 1.00 4.36 ? 6 ASN A ND2 1 ATOM 50 O OXT . ASN A 1 6 ? -0.712 -3.989 2.558 1.00 6.76 ? 6 ASN A OXT 1 HETATM 51 O O . HOH B 2 . ? -15.880 -4.376 2.701 1.00 40.47 ? 7 HOH A O 1 HETATM 52 O O . HOH B 2 . ? -15.798 -1.963 1.638 1.00 53.97 ? 8 HOH A O 1 #