0.014036
0.000000
0.000000
0.000000
0.013285
0.000000
0.000000
0.000000
0.010132
0.00000
0.00000
0.00000
Peng, H.
Gao, F.
Zhang, Q.
Liu, Y.
Gao, G.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
71.244
75.272
98.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O7
196.155
D-gluconic acid
GLUCONIC ACID
D-saccharide
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C21 H28 N7 O17 P3
743.405
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
C
N
90
R
C
N
91
S
C
N
92
R
C
N
93
R
C
N
94
N
C
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
S
C
N
116
N
C
N
117
N
O
N
118
N
C
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
O
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
Y
168
N
C
Y
169
N
N
Y
170
N
C
Y
171
N
C
Y
172
N
N
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
S
C
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
S
N
263
N
C
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
R
P
N
277
N
O
N
278
N
O
N
279
N
O
N
280
N
C
N
281
R
C
N
282
N
O
N
283
R
C
N
284
N
O
N
285
R
C
N
286
N
O
N
287
R
C
Y
288
N
N
Y
289
N
C
Y
290
N
N
Y
291
N
C
Y
292
N
C
N
293
N
N
Y
294
N
N
Y
295
N
C
Y
296
N
N
Y
297
N
C
N
298
N
O
N
299
N
P
N
300
N
O
N
301
N
O
N
302
N
O
N
303
N
C
N
304
R
C
N
305
N
O
N
306
S
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
R
C
Y
311
N
N
Y
312
N
C
Y
313
N
C
N
314
N
C
N
315
N
O
N
316
N
N
Y
317
N
C
Y
318
N
C
Y
319
N
C
N
320
N
P
N
321
N
O
N
322
N
O
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
C
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
N
397
N
O
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
R
C
N
411
N
O
N
412
N
C
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
N
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
S
C
N
452
N
C
N
453
N
O
N
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
C
Y
459
N
C
Y
460
N
C
N
461
N
O
N
462
N
O
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
N
N
475
S
C
N
476
N
C
N
477
N
O
N
478
N
C
N
479
N
C
N
480
N
C
N
481
N
O
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
doub
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
N
169
N
sing
Y
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
Y
284
N
sing
Y
285
N
sing
Y
286
N
doub
N
287
N
sing
Y
288
N
sing
Y
289
N
sing
Y
290
N
doub
N
291
N
sing
Y
292
N
doub
N
293
N
sing
N
294
N
sing
Y
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
sing
Y
322
N
doub
Y
323
N
doub
N
324
N
sing
N
325
N
sing
Y
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
Y
331
N
doub
N
332
N
sing
Y
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
Y
352
N
doub
Y
353
N
sing
Y
354
N
sing
N
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
Y
421
N
doub
Y
422
N
sing
Y
423
N
sing
N
424
N
sing
Y
425
N
doub
Y
426
N
sing
Y
427
N
sing
N
428
N
sing
Y
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
doub
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
Y
449
N
doub
Y
450
N
sing
Y
451
N
sing
N
452
N
sing
Y
453
N
doub
N
454
N
sing
Y
455
N
doub
N
456
N
sing
Y
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
doub
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
US
Protein Sci.
PRCIEI
0795
0961-8368
18
294
10.1002/PRO.32
19177572
Structural Insight Into the Catalytic Mechanism of Gluconate 5-Dehydrogenase from Streptococcus Suis: Crystal Structures of the Substrate-Free and Quaternary Complex Enzymes.
2009
10.2210/pdb3o03/pdb
pdb_00003o03
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
IMAGE PLATE
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007
31056.475
Dehydrogenase with different specificities
1.1.1.69
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
743.405
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
1
syn
non-polymer
196.155
D-gluconic acid
1
man
non-polymer
18.015
water
208
nat
water
no
no
MGSSHHHHHHSSGLVPRGSHMNQQFSLDQFSLKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKA
AGINAHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPFIVSKAVIPSMIKK
GHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQKDGSRHPFDQFI
IAKTPAARWGEAEDLMGPAVFLASDASNFVNGHILYVDGGILAYIGKQPEA
MGSSHHHHHHSSGLVPRGSHMNQQFSLDQFSLKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKA
AGINAHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPFIVSKAVIPSMIKK
GHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQKDGSRHPFDQFI
IAKTPAARWGEAEDLMGPAVFLASDASNFVNGHILYVDGGILAYIGKQPEA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
05ZYH33
sample
IDNO, SSU05_1225
391295
Streptococcus suis
562
ESCHERICHIA COLI
BL21
PLASMID
PET28B
1
2.13
42.26
atom_site
chem_comp
entity
pdbx_entity_nonpoly
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Structure summary
Atomic model
Database references
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2010-12-15
1
1
2011-07-13
1
2
2014-11-12
2
0
2020-07-29
2
1
2023-11-01
_atom_site.auth_atom_id
_atom_site.label_atom_id
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
2010-12-15
SPRSDE
RCSB
Y
PDBJ
2010-07-18
REL
REL
CA
CALCIUM ION
NAP
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
GCO
D-gluconic acid
HOH
water
3CXR
PDB
experimental model
CA
272
2
CA
CA
272
A
NAP
273
3
NAP
NAP
273
A
GKR
274
4
GCO
GCO
274
A
HOH
275
5
HOH
HOH
275
A
HOH
276
5
HOH
HOH
276
A
HOH
277
5
HOH
HOH
277
A
HOH
278
5
HOH
HOH
278
A
HOH
279
5
HOH
HOH
279
A
HOH
280
5
HOH
HOH
280
A
HOH
281
5
HOH
HOH
281
A
HOH
282
5
HOH
HOH
282
A
HOH
283
5
HOH
HOH
283
A
HOH
284
5
HOH
HOH
284
A
HOH
285
5
HOH
HOH
285
A
HOH
286
5
HOH
HOH
286
A
HOH
287
5
HOH
HOH
287
A
HOH
288
5
HOH
HOH
288
A
HOH
289
5
HOH
HOH
289
A
HOH
290
5
HOH
HOH
290
A
HOH
291
5
HOH
HOH
291
A
HOH
292
5
HOH
HOH
292
A
HOH
293
5
HOH
HOH
293
A
HOH
294
5
HOH
HOH
294
A
HOH
295
5
HOH
HOH
295
A
HOH
296
5
HOH
HOH
296
A
HOH
297
5
HOH
HOH
297
A
HOH
298
5
HOH
HOH
298
A
HOH
299
5
HOH
HOH
299
A
HOH
300
5
HOH
HOH
300
A
HOH
301
5
HOH
HOH
301
A
HOH
302
5
HOH
HOH
302
A
HOH
303
5
HOH
HOH
303
A
HOH
304
5
HOH
HOH
304
A
HOH
305
5
HOH
HOH
305
A
HOH
306
5
HOH
HOH
306
A
HOH
307
5
HOH
HOH
307
A
HOH
308
5
HOH
HOH
308
A
HOH
309
5
HOH
HOH
309
A
HOH
310
5
HOH
HOH
310
A
HOH
311
5
HOH
HOH
311
A
HOH
312
5
HOH
HOH
312
A
HOH
313
5
HOH
HOH
313
A
HOH
314
5
HOH
HOH
314
A
HOH
315
5
HOH
HOH
315
A
HOH
316
5
HOH
HOH
316
A
HOH
317
5
HOH
HOH
317
A
HOH
318
5
HOH
HOH
318
A
HOH
319
5
HOH
HOH
319
A
HOH
320
5
HOH
HOH
320
A
HOH
321
5
HOH
HOH
321
A
HOH
322
5
HOH
HOH
322
A
HOH
323
5
HOH
HOH
323
A
HOH
324
5
HOH
HOH
324
A
HOH
325
5
HOH
HOH
325
A
HOH
326
5
HOH
HOH
326
A
HOH
327
5
HOH
HOH
327
A
HOH
328
5
HOH
HOH
328
A
HOH
329
5
HOH
HOH
329
A
HOH
330
5
HOH
HOH
330
A
HOH
331
5
HOH
HOH
331
A
HOH
332
5
HOH
HOH
332
A
HOH
333
5
HOH
HOH
333
A
HOH
334
5
HOH
HOH
334
A
HOH
335
5
HOH
HOH
335
A
HOH
336
5
HOH
HOH
336
A
HOH
337
5
HOH
HOH
337
A
HOH
338
5
HOH
HOH
338
A
HOH
339
5
HOH
HOH
339
A
HOH
340
5
HOH
HOH
340
A
HOH
341
5
HOH
HOH
341
A
HOH
342
5
HOH
HOH
342
A
HOH
343
5
HOH
HOH
343
A
HOH
344
5
HOH
HOH
344
A
HOH
345
5
HOH
HOH
345
A
HOH
346
5
HOH
HOH
346
A
HOH
347
5
HOH
HOH
347
A
HOH
348
5
HOH
HOH
348
A
HOH
349
5
HOH
HOH
349
A
HOH
350
5
HOH
HOH
350
A
HOH
351
5
HOH
HOH
351
A
HOH
352
5
HOH
HOH
352
A
HOH
353
5
HOH
HOH
353
A
HOH
354
5
HOH
HOH
354
A
HOH
355
5
HOH
HOH
355
A
HOH
356
5
HOH
HOH
356
A
HOH
357
5
HOH
HOH
357
A
HOH
358
5
HOH
HOH
358
A
HOH
359
5
HOH
HOH
359
A
HOH
360
5
HOH
HOH
360
A
HOH
361
5
HOH
HOH
361
A
HOH
362
5
HOH
HOH
362
A
HOH
363
5
HOH
HOH
363
A
HOH
364
5
HOH
HOH
364
A
HOH
365
5
HOH
HOH
365
A
HOH
366
5
HOH
HOH
366
A
HOH
367
5
HOH
HOH
367
A
HOH
368
5
HOH
HOH
368
A
HOH
369
5
HOH
HOH
369
A
HOH
370
5
HOH
HOH
370
A
HOH
371
5
HOH
HOH
371
A
HOH
372
5
HOH
HOH
372
A
HOH
373
5
HOH
HOH
373
A
HOH
374
5
HOH
HOH
374
A
HOH
375
5
HOH
HOH
375
A
HOH
376
5
HOH
HOH
376
A
HOH
377
5
HOH
HOH
377
A
HOH
378
5
HOH
HOH
378
A
HOH
379
5
HOH
HOH
379
A
HOH
380
5
HOH
HOH
380
A
HOH
381
5
HOH
HOH
381
A
HOH
382
5
HOH
HOH
382
A
HOH
383
5
HOH
HOH
383
A
HOH
384
5
HOH
HOH
384
A
HOH
385
5
HOH
HOH
385
A
HOH
386
5
HOH
HOH
386
A
HOH
387
5
HOH
HOH
387
A
HOH
388
5
HOH
HOH
388
A
HOH
389
5
HOH
HOH
389
A
HOH
390
5
HOH
HOH
390
A
HOH
391
5
HOH
HOH
391
A
HOH
392
5
HOH
HOH
392
A
HOH
393
5
HOH
HOH
393
A
HOH
394
5
HOH
HOH
394
A
HOH
395
5
HOH
HOH
395
A
HOH
396
5
HOH
HOH
396
A
HOH
397
5
HOH
HOH
397
A
HOH
398
5
HOH
HOH
398
A
HOH
399
5
HOH
HOH
399
A
HOH
400
5
HOH
HOH
400
A
HOH
401
5
HOH
HOH
401
A
HOH
402
5
HOH
HOH
402
A
HOH
403
5
HOH
HOH
403
A
HOH
404
5
HOH
HOH
404
A
HOH
405
5
HOH
HOH
405
A
HOH
406
5
HOH
HOH
406
A
HOH
407
5
HOH
HOH
407
A
HOH
408
5
HOH
HOH
408
A
HOH
409
5
HOH
HOH
409
A
HOH
410
5
HOH
HOH
410
A
HOH
411
5
HOH
HOH
411
A
HOH
412
5
HOH
HOH
412
A
HOH
413
5
HOH
HOH
413
A
HOH
414
5
HOH
HOH
414
A
HOH
415
5
HOH
HOH
415
A
HOH
416
5
HOH
HOH
416
A
HOH
417
5
HOH
HOH
417
A
HOH
418
5
HOH
HOH
418
A
HOH
419
5
HOH
HOH
419
A
HOH
420
5
HOH
HOH
420
A
HOH
421
5
HOH
HOH
421
A
HOH
422
5
HOH
HOH
422
A
HOH
423
5
HOH
HOH
423
A
HOH
424
5
HOH
HOH
424
A
HOH
425
5
HOH
HOH
425
A
HOH
426
5
HOH
HOH
426
A
HOH
427
5
HOH
HOH
427
A
HOH
428
5
HOH
HOH
428
A
HOH
429
5
HOH
HOH
429
A
HOH
430
5
HOH
HOH
430
A
HOH
431
5
HOH
HOH
431
A
HOH
432
5
HOH
HOH
432
A
HOH
433
5
HOH
HOH
433
A
HOH
434
5
HOH
HOH
434
A
HOH
435
5
HOH
HOH
435
A
HOH
436
5
HOH
HOH
436
A
HOH
437
5
HOH
HOH
437
A
HOH
438
5
HOH
HOH
438
A
HOH
439
5
HOH
HOH
439
A
HOH
440
5
HOH
HOH
440
A
HOH
441
5
HOH
HOH
441
A
HOH
442
5
HOH
HOH
442
A
HOH
443
5
HOH
HOH
443
A
HOH
444
5
HOH
HOH
444
A
HOH
445
5
HOH
HOH
445
A
HOH
446
5
HOH
HOH
446
A
HOH
447
5
HOH
HOH
447
A
HOH
448
5
HOH
HOH
448
A
HOH
449
5
HOH
HOH
449
A
HOH
450
5
HOH
HOH
450
A
HOH
451
5
HOH
HOH
451
A
HOH
452
5
HOH
HOH
452
A
HOH
453
5
HOH
HOH
453
A
HOH
454
5
HOH
HOH
454
A
HOH
455
5
HOH
HOH
455
A
HOH
456
5
HOH
HOH
456
A
HOH
457
5
HOH
HOH
457
A
HOH
458
5
HOH
HOH
458
A
HOH
459
5
HOH
HOH
459
A
HOH
460
5
HOH
HOH
460
A
HOH
461
5
HOH
HOH
461
A
HOH
462
5
HOH
HOH
462
A
HOH
463
5
HOH
HOH
463
A
HOH
464
5
HOH
HOH
464
A
HOH
465
5
HOH
HOH
465
A
HOH
466
5
HOH
HOH
466
A
HOH
467
5
HOH
HOH
467
A
HOH
468
5
HOH
HOH
468
A
HOH
469
5
HOH
HOH
469
A
HOH
470
5
HOH
HOH
470
A
HOH
471
5
HOH
HOH
471
A
HOH
472
5
HOH
HOH
472
A
HOH
473
5
HOH
HOH
473
A
HOH
474
5
HOH
HOH
474
A
HOH
475
5
HOH
HOH
475
A
HOH
476
5
HOH
HOH
476
A
HOH
477
5
HOH
HOH
477
A
HOH
478
5
HOH
HOH
478
A
HOH
479
5
HOH
HOH
479
A
HOH
480
5
HOH
HOH
480
A
HOH
481
5
HOH
HOH
481
A
HOH
482
5
HOH
HOH
482
A
n
1
-19
A
n
2
-18
A
n
3
-17
A
n
4
-16
A
n
5
-15
A
n
6
-14
A
n
7
-13
A
n
8
-12
A
n
9
-11
A
n
10
-10
A
n
11
-9
A
n
12
-8
A
n
13
-7
A
n
14
-6
A
n
15
-5
A
n
16
-4
A
n
17
-3
A
n
18
-2
A
n
19
-1
A
n
20
0
A
n
21
1
A
n
22
2
A
n
23
3
A
GLN
4
n
24
GLN
4
A
PHE
5
n
25
PHE
5
A
SER
6
n
26
SER
6
A
LEU
7
n
27
LEU
7
A
ASP
8
n
28
ASP
8
A
GLN
9
n
29
GLN
9
A
PHE
10
n
30
PHE
10
A
SER
11
n
31
SER
11
A
LEU
12
n
32
LEU
12
A
LYS
13
n
33
LYS
13
A
GLY
14
n
34
GLY
14
A
LYS
15
n
35
LYS
15
A
ILE
16
n
36
ILE
16
A
ALA
17
n
37
ALA
17
A
LEU
18
n
38
LEU
18
A
VAL
19
n
39
VAL
19
A
THR
20
n
40
THR
20
A
GLY
21
n
41
GLY
21
A
ALA
22
n
42
ALA
22
A
SER
23
n
43
SER
23
A
TYR
24
n
44
TYR
24
A
GLY
25
n
45
GLY
25
A
ILE
26
n
46
ILE
26
A
GLY
27
n
47
GLY
27
A
PHE
28
n
48
PHE
28
A
ALA
29
n
49
ALA
29
A
ILE
30
n
50
ILE
30
A
ALA
31
n
51
ALA
31
A
SER
32
n
52
SER
32
A
ALA
33
n
53
ALA
33
A
TYR
34
n
54
TYR
34
A
ALA
35
n
55
ALA
35
A
LYS
36
n
56
LYS
36
A
ALA
37
n
57
ALA
37
A
GLY
38
n
58
GLY
38
A
ALA
39
n
59
ALA
39
A
THR
40
n
60
THR
40
A
ILE
41
n
61
ILE
41
A
VAL
42
n
62
VAL
42
A
PHE
43
n
63
PHE
43
A
ASN
44
n
64
ASN
44
A
ASP
45
n
65
ASP
45
A
ILE
46
n
66
ILE
46
A
ASN
47
n
67
ASN
47
A
GLN
48
n
68
GLN
48
A
GLU
49
n
69
GLU
49
A
LEU
50
n
70
LEU
50
A
VAL
51
n
71
VAL
51
A
ASP
52
n
72
ASP
52
A
ARG
53
n
73
ARG
53
A
GLY
54
n
74
GLY
54
A
MET
55
n
75
MET
55
A
ALA
56
n
76
ALA
56
A
ALA
57
n
77
ALA
57
A
TYR
58
n
78
TYR
58
A
LYS
59
n
79
LYS
59
A
ALA
60
n
80
ALA
60
A
ALA
61
n
81
ALA
61
A
GLY
62
n
82
GLY
62
A
ILE
63
n
83
ILE
63
A
ASN
64
n
84
ASN
64
A
ALA
65
n
85
ALA
65
A
HIS
66
n
86
HIS
66
A
GLY
67
n
87
GLY
67
A
TYR
68
n
88
TYR
68
A
VAL
69
n
89
VAL
69
A
CYS
70
n
90
CYS
70
A
ASP
71
n
91
ASP
71
A
VAL
72
n
92
VAL
72
A
THR
73
n
93
THR
73
A
ASP
74
n
94
ASP
74
A
GLU
75
n
95
GLU
75
A
ASP
76
n
96
ASP
76
A
GLY
77
n
97
GLY
77
A
ILE
78
n
98
ILE
78
A
GLN
79
n
99
GLN
79
A
ALA
80
n
100
ALA
80
A
MET
81
n
101
MET
81
A
VAL
82
n
102
VAL
82
A
ALA
83
n
103
ALA
83
A
GLN
84
n
104
GLN
84
A
ILE
85
n
105
ILE
85
A
GLU
86
n
106
GLU
86
A
SER
87
n
107
SER
87
A
GLU
88
n
108
GLU
88
A
VAL
89
n
109
VAL
89
A
GLY
90
n
110
GLY
90
A
ILE
91
n
111
ILE
91
A
ILE
92
n
112
ILE
92
A
ASP
93
n
113
ASP
93
A
ILE
94
n
114
ILE
94
A
LEU
95
n
115
LEU
95
A
VAL
96
n
116
VAL
96
A
ASN
97
n
117
ASN
97
A
ASN
98
n
118
ASN
98
A
ALA
99
n
119
ALA
99
A
GLY
100
n
120
GLY
100
A
ILE
101
n
121
ILE
101
A
ILE
102
n
122
ILE
102
A
ARG
103
n
123
ARG
103
A
ARG
104
n
124
ARG
104
A
VAL
105
n
125
VAL
105
A
PRO
106
n
126
PRO
106
A
MET
107
n
127
MET
107
A
ILE
108
n
128
ILE
108
A
GLU
109
n
129
GLU
109
A
MET
110
n
130
MET
110
A
THR
111
n
131
THR
111
A
ALA
112
n
132
ALA
112
A
ALA
113
n
133
ALA
113
A
GLN
114
n
134
GLN
114
A
PHE
115
n
135
PHE
115
A
ARG
116
n
136
ARG
116
A
GLN
117
n
137
GLN
117
A
VAL
118
n
138
VAL
118
A
ILE
119
n
139
ILE
119
A
ASP
120
n
140
ASP
120
A
ILE
121
n
141
ILE
121
A
ASP
122
n
142
ASP
122
A
LEU
123
n
143
LEU
123
A
ASN
124
n
144
ASN
124
A
ALA
125
n
145
ALA
125
A
PRO
126
n
146
PRO
126
A
PHE
127
n
147
PHE
127
A
ILE
128
n
148
ILE
128
A
VAL
129
n
149
VAL
129
A
SER
130
n
150
SER
130
A
LYS
131
n
151
LYS
131
A
ALA
132
n
152
ALA
132
A
VAL
133
n
153
VAL
133
A
ILE
134
n
154
ILE
134
A
PRO
135
n
155
PRO
135
A
SER
136
n
156
SER
136
A
MET
137
n
157
MET
137
A
ILE
138
n
158
ILE
138
A
LYS
139
n
159
LYS
139
A
LYS
140
n
160
LYS
140
A
GLY
141
n
161
GLY
141
A
HIS
142
n
162
HIS
142
A
GLY
143
n
163
GLY
143
A
LYS
144
n
164
LYS
144
A
ILE
145
n
165
ILE
145
A
ILE
146
n
166
ILE
146
A
ASN
147
n
167
ASN
147
A
ILE
148
n
168
ILE
148
A
CYS
149
n
169
CYS
149
A
SER
150
n
170
SER
150
A
MET
151
n
171
MET
151
A
MET
152
n
172
MET
152
A
SER
153
n
173
SER
153
A
GLU
154
n
174
GLU
154
A
LEU
155
n
175
LEU
155
A
GLY
156
n
176
GLY
156
A
ARG
157
n
177
ARG
157
A
GLU
158
n
178
GLU
158
A
THR
159
n
179
THR
159
A
VAL
160
n
180
VAL
160
A
SER
161
n
181
SER
161
A
ALA
162
n
182
ALA
162
A
TYR
163
n
183
TYR
163
A
ALA
164
n
184
ALA
164
A
ALA
165
n
185
ALA
165
A
ALA
166
n
186
ALA
166
A
LYS
167
n
187
LYS
167
A
GLY
168
n
188
GLY
168
A
GLY
169
n
189
GLY
169
A
LEU
170
n
190
LEU
170
A
LYS
171
n
191
LYS
171
A
MET
172
n
192
MET
172
A
LEU
173
n
193
LEU
173
A
THR
174
n
194
THR
174
A
LYS
175
n
195
LYS
175
A
ASN
176
n
196
ASN
176
A
ILE
177
n
197
ILE
177
A
ALA
178
n
198
ALA
178
A
SER
179
n
199
SER
179
A
GLU
180
n
200
GLU
180
A
TYR
181
n
201
TYR
181
A
GLY
182
n
202
GLY
182
A
GLU
183
n
203
GLU
183
A
ALA
184
n
204
ALA
184
A
ASN
185
n
205
ASN
185
A
ILE
186
n
206
ILE
186
A
GLN
187
n
207
GLN
187
A
CYS
188
n
208
CYS
188
A
ASN
189
n
209
ASN
189
A
GLY
190
n
210
GLY
190
A
ILE
191
n
211
ILE
191
A
GLY
192
n
212
GLY
192
A
PRO
193
n
213
PRO
193
A
GLY
194
n
214
GLY
194
A
TYR
195
n
215
TYR
195
A
ILE
196
n
216
ILE
196
A
ALA
197
n
217
ALA
197
A
THR
198
n
218
THR
198
A
PRO
199
n
219
PRO
199
A
GLN
200
n
220
GLN
200
A
THR
201
n
221
THR
201
A
n
222
202
A
n
223
203
A
n
224
204
A
n
225
205
A
n
226
206
A
n
227
207
A
n
228
208
A
n
229
209
A
n
230
210
A
n
231
211
A
n
232
212
A
n
233
213
A
HIS
214
n
234
HIS
214
A
PRO
215
n
235
PRO
215
A
PHE
216
n
236
PHE
216
A
ASP
217
n
237
ASP
217
A
GLN
218
n
238
GLN
218
A
PHE
219
n
239
PHE
219
A
ILE
220
n
240
ILE
220
A
ILE
221
n
241
ILE
221
A
ALA
222
n
242
ALA
222
A
LYS
223
n
243
LYS
223
A
THR
224
n
244
THR
224
A
PRO
225
n
245
PRO
225
A
ALA
226
n
246
ALA
226
A
ALA
227
n
247
ALA
227
A
ARG
228
n
248
ARG
228
A
TRP
229
n
249
TRP
229
A
GLY
230
n
250
GLY
230
A
GLU
231
n
251
GLU
231
A
ALA
232
n
252
ALA
232
A
GLU
233
n
253
GLU
233
A
ASP
234
n
254
ASP
234
A
LEU
235
n
255
LEU
235
A
MET
236
n
256
MET
236
A
GLY
237
n
257
GLY
237
A
PRO
238
n
258
PRO
238
A
ALA
239
n
259
ALA
239
A
VAL
240
n
260
VAL
240
A
PHE
241
n
261
PHE
241
A
LEU
242
n
262
LEU
242
A
ALA
243
n
263
ALA
243
A
SER
244
n
264
SER
244
A
ASP
245
n
265
ASP
245
A
ALA
246
n
266
ALA
246
A
SER
247
n
267
SER
247
A
ASN
248
n
268
ASN
248
A
PHE
249
n
269
PHE
249
A
VAL
250
n
270
VAL
250
A
ASN
251
n
271
ASN
251
A
GLY
252
n
272
GLY
252
A
HIS
253
n
273
HIS
253
A
ILE
254
n
274
ILE
254
A
LEU
255
n
275
LEU
255
A
TYR
256
n
276
TYR
256
A
VAL
257
n
277
VAL
257
A
ASP
258
n
278
ASP
258
A
GLY
259
n
279
GLY
259
A
GLY
260
n
280
GLY
260
A
ILE
261
n
281
ILE
261
A
LEU
262
n
282
LEU
262
A
ALA
263
n
283
ALA
263
A
TYR
264
n
284
TYR
264
A
ILE
265
n
285
ILE
265
A
GLY
266
n
286
GLY
266
A
LYS
267
n
287
LYS
267
A
GLN
268
n
288
GLN
268
A
PRO
269
n
289
PRO
269
A
n
290
270
A
n
291
271
A
author_and_software_defined_assembly
PISA
4
tetrameric
software_defined_assembly
PISA
2
dimeric
17490
-122
32510
3560
-29
21440
A
SER
150
A
OG
SER
170
1_555
A
CA
272
B
CA
CA
1_555
A
PRO
193
A
O
PRO
213
1_555
122.5
A
SER
150
A
OG
SER
170
1_555
A
CA
272
B
CA
CA
1_555
A
HOH
479
E
O
HOH
1_555
110.7
A
PRO
193
A
O
PRO
213
1_555
A
CA
272
B
CA
CA
1_555
A
HOH
479
E
O
HOH
1_555
123.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_565
-x,-y+1,z
crystal symmetry operation
0.0000000000
75.2720000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_565
x,-y+1,-z
crystal symmetry operation
0.0000000000
75.2720000000
0.0000000000
A
O
HIS
66
A
O
HIS
86
A
N
PHE
43
A
N
PHE
63
A
O
THR
40
A
O
THR
60
A
N
ALA
17
A
N
ALA
37
A
N
LEU
18
A
N
LEU
38
A
O
VAL
96
A
O
VAL
116
A
N
LEU
95
A
N
LEU
115
A
O
ILE
146
A
O
ILE
166
A
N
ASN
147
A
N
ASN
167
A
O
ASN
189
A
O
ASN
209
A
N
GLY
190
A
N
GLY
210
A
O
LEU
255
A
O
LEU
275
1
A
CG
GLN
200
A
CG
GLN
220
1
Y
1
A
CD
GLN
200
A
CD
GLN
220
1
Y
1
A
OE1
GLN
200
A
OE1
GLN
220
1
Y
1
A
NE2
GLN
200
A
NE2
GLN
220
1
Y
1
A
OG1
THR
201
A
OG1
THR
221
1
Y
1
A
CG2
THR
201
A
CG2
THR
221
1
Y
1
A
MET
-19
A
MET
1
1
Y
1
A
GLY
-18
A
GLY
2
1
Y
1
A
SER
-17
A
SER
3
1
Y
1
A
SER
-16
A
SER
4
1
Y
1
A
HIS
-15
A
HIS
5
1
Y
1
A
HIS
-14
A
HIS
6
1
Y
1
A
HIS
-13
A
HIS
7
1
Y
1
A
HIS
-12
A
HIS
8
1
Y
1
A
HIS
-11
A
HIS
9
1
Y
1
A
HIS
-10
A
HIS
10
1
Y
1
A
SER
-9
A
SER
11
1
Y
1
A
SER
-8
A
SER
12
1
Y
1
A
GLY
-7
A
GLY
13
1
Y
1
A
LEU
-6
A
LEU
14
1
Y
1
A
VAL
-5
A
VAL
15
1
Y
1
A
PRO
-4
A
PRO
16
1
Y
1
A
ARG
-3
A
ARG
17
1
Y
1
A
GLY
-2
A
GLY
18
1
Y
1
A
SER
-1
A
SER
19
1
Y
1
A
HIS
0
A
HIS
20
1
Y
1
A
MET
1
A
MET
21
1
Y
1
A
ASN
2
A
ASN
22
1
Y
1
A
GLN
3
A
GLN
23
1
Y
1
A
ALA
202
A
ALA
222
1
Y
1
A
PRO
203
A
PRO
223
1
Y
1
A
LEU
204
A
LEU
224
1
Y
1
A
ARG
205
A
ARG
225
1
Y
1
A
GLU
206
A
GLU
226
1
Y
1
A
LEU
207
A
LEU
227
1
Y
1
A
GLN
208
A
GLN
228
1
Y
1
A
LYS
209
A
LYS
229
1
Y
1
A
ASP
210
A
ASP
230
1
Y
1
A
GLY
211
A
GLY
231
1
Y
1
A
SER
212
A
SER
232
1
Y
1
A
ARG
213
A
ARG
233
1
Y
1
A
GLU
270
A
GLU
290
1
Y
1
A
ALA
271
A
ALA
291
1
Y
1
A
A
O
O
HOH
HOH
349
432
2.12
1
A
A
O4
O
GCO
HOH
274
479
2.18
1
A
ALA
22
-97.12
36.21
1
A
VAL
89
-126.62
-54.40
1
A
LEU
123
-125.39
-56.82
1
A
CYS
149
-92.52
-140.52
1
A
THR
159
81.14
-16.82
1
A
GLN
200
-72.79
40.46
24.20
-1.67000
0.00000
0.00000
1.08000
0.00000
0.59000
0.950
0.923
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.242
0.191
0.194
1.90
25.87
1072
20183
5.000
99.8
3.329
0.099
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.153
0.80
0.80
1.40
3CXR
MAXIMUM LIKELIHOOD
MASK
1.90
25.87
208
2154
62
0
1884
0.018
0.022
1980
1.637
1.993
2688
6.241
5.000
252
37.800
25.263
76
13.732
15.000
316
15.198
15.000
6
0.160
0.200
311
0.006
0.020
1461
0.203
0.200
983
0.297
0.200
1375
0.155
0.200
156
0.202
0.200
104
0.188
0.200
17
0.918
1.500
1303
1.317
2.000
1993
2.391
3.000
795
3.465
4.500
695
0.3900
0.2880
1.95
81
1427
20
98.89
1.800
59.870
3O03
24607
1
0.06800
1.80
25.87
0.15000
phasing
AMoRE
refinement
REFMAC
5.2.0019
data reduction
HKL-2000
data scaling
HKL-2000
Quaternary complex structure of gluconate 5-dehydrogenase from streptococcus suis type 2
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
SER
6
A
SER
26
HELX_P
A
SER
11
A
SER
31
5
1
6
A
TYR
24
A
TYR
44
HELX_P
A
ALA
37
A
ALA
57
1
2
14
A
ASN
47
A
ASN
67
HELX_P
A
ALA
61
A
ALA
81
1
3
15
A
ASP
74
A
ASP
94
HELX_P
A
VAL
89
A
VAL
109
1
4
16
A
PRO
106
A
PRO
126
HELX_P
A
MET
110
A
MET
130
5
5
5
A
THR
111
A
THR
131
HELX_P
A
LEU
123
A
LEU
143
1
6
13
A
LEU
123
A
LEU
143
HELX_P
A
GLY
141
A
GLY
161
1
7
19
A
SER
150
A
SER
170
HELX_P
A
GLU
154
A
GLU
174
5
8
5
A
VAL
160
A
VAL
180
HELX_P
A
GLY
182
A
GLY
202
1
9
23
A
HIS
214
A
HIS
234
HELX_P
A
THR
224
A
THR
244
1
10
11
A
GLU
231
A
GLU
251
HELX_P
A
SER
244
A
SER
264
1
11
14
A
ASP
245
A
ASP
265
HELX_P
A
ASN
248
A
ASN
268
5
12
4
A
GLY
260
A
GLY
280
HELX_P
A
TYR
264
A
TYR
284
5
13
5
metalc
3.009
A
SER
150
A
OG
SER
170
1_555
A
CA
272
B
CA
CA
1_555
metalc
2.836
A
PRO
193
A
O
PRO
213
1_555
A
CA
272
B
CA
CA
1_555
metalc
2.520
A
CA
272
B
CA
CA
1_555
A
HOH
479
E
O
HOH
1_555
OXIDOREDUCTASE
ROSSMANN FOLD, OXIDOREDUCTASE
A4VVQ2_STRSY
UNP
1
1
A4VVQ2
MNQQFSLDQFSLKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVCDVTDEDGIQA
MVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETV
SAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQKDGSRHPFDQFIIAKTPAARWGEAEDLMGPAV
FLASDASNFVNGHILYVDGGILAYIGKQPEA
1
271
3O03
1
271
A4VVQ2
A
1
21
291
1
expression tag
MET
-19
3O03
A
A4VVQ2
UNP
1
1
expression tag
GLY
-18
3O03
A
A4VVQ2
UNP
2
1
expression tag
SER
-17
3O03
A
A4VVQ2
UNP
3
1
expression tag
SER
-16
3O03
A
A4VVQ2
UNP
4
1
expression tag
HIS
-15
3O03
A
A4VVQ2
UNP
5
1
expression tag
HIS
-14
3O03
A
A4VVQ2
UNP
6
1
expression tag
HIS
-13
3O03
A
A4VVQ2
UNP
7
1
expression tag
HIS
-12
3O03
A
A4VVQ2
UNP
8
1
expression tag
HIS
-11
3O03
A
A4VVQ2
UNP
9
1
expression tag
HIS
-10
3O03
A
A4VVQ2
UNP
10
1
expression tag
SER
-9
3O03
A
A4VVQ2
UNP
11
1
expression tag
SER
-8
3O03
A
A4VVQ2
UNP
12
1
expression tag
GLY
-7
3O03
A
A4VVQ2
UNP
13
1
expression tag
LEU
-6
3O03
A
A4VVQ2
UNP
14
1
expression tag
VAL
-5
3O03
A
A4VVQ2
UNP
15
1
expression tag
PRO
-4
3O03
A
A4VVQ2
UNP
16
1
expression tag
ARG
-3
3O03
A
A4VVQ2
UNP
17
1
expression tag
GLY
-2
3O03
A
A4VVQ2
UNP
18
1
expression tag
SER
-1
3O03
A
A4VVQ2
UNP
19
1
expression tag
HIS
0
3O03
A
A4VVQ2
UNP
20
7
parallel
parallel
parallel
parallel
parallel
parallel
A
HIS
66
A
HIS
86
A
VAL
69
A
VAL
89
A
THR
40
A
THR
60
A
ASP
45
A
ASP
65
A
ILE
16
A
ILE
36
A
THR
20
A
THR
40
A
ILE
94
A
ILE
114
A
ASN
97
A
ASN
117
A
GLY
143
A
GLY
163
A
ILE
148
A
ILE
168
A
ILE
186
A
ILE
206
A
PRO
193
A
PRO
213
A
ILE
254
A
ILE
274
A
VAL
257
A
VAL
277
23
I 2 2 2