0.009423 0.000000 0.008729 0.000000 0.021121 0.000000 0.000000 0.000000 0.017252 0.00000 0.00000 0.00000 Rychlik, M.P. Chon, H. Cerritelli, S.M. Klimek, P. Crouch, R.J. Nowotny, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 132.81 90.00 106.122 47.347 79.012 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 R C N 85 N O N 86 R C N 87 N N N 88 N C N 89 N O N 90 N N N 91 N C N 92 N N N 93 N C N 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N CA N 110 N N N 111 R C N 112 N C N 113 N O N 114 N C N 115 N S N 116 N O N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C Y 136 N N Y 137 N C Y 138 N N Y 139 N C Y 140 N C N 141 N N Y 142 N N Y 143 N C Y 144 N N Y 145 N C N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N O N 161 N P N 162 N O N 163 N O N 164 N O N 165 N C N 166 R C N 167 N O N 168 S C N 169 N O N 170 N C N 171 R C N 172 N N N 173 N C N 174 N O N 175 N N N 176 N C N 177 N N N 178 N C N 179 N C N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N O N 195 N P N 196 N O N 197 N O N 198 N O N 199 N C N 200 R C N 201 N O N 202 S C N 203 N O N 204 N C N 205 R C Y 206 N N Y 207 N C Y 208 N N Y 209 N C N 210 N C N 211 N O N 212 N N N 213 N C N 214 N N N 215 N N Y 216 N C N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N O N 232 N P N 233 N O N 234 N O N 235 N O N 236 N C N 237 R C N 238 N O N 239 S C N 240 N O N 241 N C N 242 R C N 243 N N N 244 N C N 245 N O N 246 N N N 247 N C N 248 N O N 249 N C N 250 N C N 251 N C N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C N 272 N C N 273 N C N 274 N O N 275 N N N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N C N 293 N C N 294 N O N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 N C N 308 N C N 309 N O N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N N N 317 S C N 318 N C N 319 N O N 320 N C Y 321 N C Y 322 N N Y 323 N C Y 324 N C Y 325 N N N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N O N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 S C N 345 N C N 346 N C N 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N N N 363 S C N 364 N C N 365 N O N 366 N C N 367 N C N 368 N C N 369 N C N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 N C N 389 N C N 390 N C N 391 N C N 392 N N N 393 N O N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N N N 410 S C N 411 N C N 412 N O N 413 N C N 414 N C N 415 N S N 416 N C N 417 N O N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N N N 430 S C N 431 N C N 432 N O N 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N C Y 438 N C Y 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N N N 453 S C N 454 N C N 455 N O N 456 N C N 457 N C N 458 N C N 459 N O N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N N N 470 S C N 471 N C N 472 N O N 473 N C N 474 N O N 475 N O N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N N N 484 S C N 485 N C N 486 N O N 487 R C N 488 N O N 489 N C N 490 N O N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N N N 501 S C N 502 N C N 503 N O N 504 N C Y 505 N C Y 506 N C Y 507 N C Y 508 N C Y 509 N C Y 510 N C N 511 N O N 512 N O N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N N N 525 S C N 526 N C N 527 N O N 528 N C N 529 N C N 530 N C N 531 N O N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing Y 142 N sing Y 143 N sing Y 144 N doub N 145 N sing Y 146 N sing Y 147 N sing Y 148 N doub N 149 N sing Y 150 N doub N 151 N sing N 152 N sing Y 153 N sing Y 154 N doub N 155 N sing Y 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing Y 215 N sing Y 216 N sing Y 217 N doub N 218 N sing Y 219 N sing N 220 N sing Y 221 N doub N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing Y 325 N sing Y 326 N doub Y 327 N doub N 328 N sing Y 329 N sing N 330 N sing Y 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing Y 433 N doub Y 434 N sing Y 435 N sing N 436 N sing Y 437 N doub N 438 N sing Y 439 N doub N 440 N sing Y 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N doub N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N doub N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N doub N 498 N sing N 499 N sing N 500 N sing N 501 N sing Y 502 N doub Y 503 N sing Y 504 N sing N 505 N sing Y 506 N doub N 507 N sing Y 508 N doub N 509 N sing Y 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N doub N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing US Mol.Cell MOCEFL 2168 1097-2765 40 658 670 10.1016/j.molcel.2010.11.001 21095591 Crystal Structures of RNase H2 in Complex with Nucleic Acid Reveal the Mechanism of RNA-DNA Junction Recognition and Cleavage. 2010 10.2210/pdb3o3g/pdb pdb_00003o3g 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2009-12-07 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 0.975 1.0 ID14-4 ESRF 0.975 SYNCHROTRON ESRF BEAMLINE ID14-4 24683.637 Ribonuclease HII 3.1.26.4 1 man polymer 3702.428 DNA (5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3') 1 syn polymer 3638.380 DNA/RNA (5'-D(*GP*AP*CP*AP*C)-R(P*C)-D(P*TP*GP*AP*TP*TP*C)-3') 1 syn polymer 40.078 CALCIUM ION 5 syn non-polymer 18.015 water 244 nat water RNase HII no no GIDELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKEIEGINDSKQLSPAKRERLLDEIMEKAAVGIGIASPEEIDLYN IFNATKLAMNRALENLSVKPSFVLVDGKGIELSVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHK GYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLLREFFEKGLISENRFERILNLLGARKS GIDELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKEIEGINDSKQLSPAKRERLLDEIMEKAAVGIGIASPEEIDLYN IFNATKLAMNRALENLSVKPSFVLVDGKGIELSVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHK GYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLLREFFEKGLISENRFERILNLLGARKS A polypeptide(L) no no (DG)(DA)(DA)(DT)(DC)(DA)(DG)(DG)(DT)(DG)(DT)(DC) GAATCAGGTGTC C polydeoxyribonucleotide no no (DG)(DA)(DC)(DA)(DC)C(DT)(DG)(DA)(DT)(DT)(DC) GACACCTGATTC D polydeoxyribonucleotide/polyribonucleotide hybrid n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample rnhB, TM_0915 2336 Thermotoga maritima 562 Escherichia coli BL21 plasmid pET21 1 2.27 45.90 VAPOR DIFFUSION, SITTING DROP 8.5 0.3 M CaCl2, 0.1 M Tris-HCl, 20% PEG 3350, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K 291 CaCl2 1 Tris-HCl 1 PEG 3350 1 CaCl2 2 Tris-HCl 2 PEG 3350 2 2.724 1 19 C 1 D 12 2.630 C_DG1:DC12_D 1 -2.325 -0.170 -0.043 -0.126 0.707 1 20 C 2 D 11 2.490 C_DA2:DT11_D 2 -9.313 -0.411 0.012 0.062 0.732 1 20 C 3 D 10 6.653 C_DA3:DT10_D 3 -15.548 0.341 -0.052 -0.094 4.611 1 20 C 4 D 9 3.158 C_DT4:DA9_D 4 -5.914 0.244 -0.005 -0.038 -7.613 1 19 C 5 D 8 0.736 C_DC5:DG8_D 5 -15.625 0.216 0.110 -0.195 -7.631 1 20 C 6 D 7 -0.045 C_DA6:DT7_D 6 -12.991 0.099 -0.008 -0.249 6.565 1 19 C 7 D 6 0.788 C_DG7:C6_D 7 -5.142 -0.341 -0.193 -0.148 -10.553 1 19 C 8 D 5 5.946 C_DG8:DC5_D 8 -8.260 -0.372 -0.263 0.039 4.890 1 20 C 9 D 4 4.058 C_DT9:DA4_D 9 4.976 0.428 -0.100 -0.150 -23.582 1 19 C 10 D 3 -6.903 C_DG10:DC3_D 10 -12.186 -0.369 -0.386 -0.177 -10.922 1 20 C 11 D 2 -2.487 C_DT11:DA2_D 11 -20.385 -0.264 0.461 -0.366 -6.982 1 19 C 12 D 1 8.230 C_DC12:DG1_D 12 -6.882 1.527 -0.395 -0.603 3.335 30.875 C C 1 2 0.980 D D 12 11 3.345 0.521 -0.080 -0.381 CC_DG1DA2:DT11DC12_DD 1 -2.411 4.534 30.779 -0.819 -0.328 3.240 36.248 C C 2 3 6.849 D D 11 10 3.282 4.252 -0.578 -0.244 CC_DA2DA3:DT10DT11_DD 2 -0.464 0.748 36.003 -0.988 0.864 2.927 27.493 C C 3 4 12.216 D D 10 9 3.118 5.764 0.307 -0.591 CC_DA3DT4:DA9DT10_DD 3 -0.260 0.551 26.892 -2.568 -0.706 3.536 39.207 C C 4 5 -0.662 D D 9 8 3.525 -0.444 -0.281 -0.245 CC_DT4DC5:DG8DA9_DD 4 -1.704 2.541 39.169 -0.308 0.199 2.668 39.038 C C 5 6 19.191 D D 8 7 3.228 12.609 0.717 -1.347 CC_DC5DA6:DT7DG8_DD 5 1.289 -1.962 37.000 -3.427 -0.929 0.357 14.118 C C 6 7 51.778 D D 7 6 3.011 11.071 -1.039 -2.009 CC_DA6DG7:C6DT7_DD 6 -0.878 4.108 8.731 -14.799 3.703 3.163 34.854 C C 7 8 16.725 D D 6 5 3.745 9.852 -0.551 -1.735 CC_DG7DG8:DC5C6_DD 7 -5.263 8.934 33.069 -4.522 0.052 2.585 30.314 C C 8 9 16.462 D D 5 4 3.103 8.495 -0.844 -1.596 CC_DG8DT9:DA4DC5_DD 8 -1.558 3.019 29.085 -4.573 1.336 3.992 36.112 C C 9 10 -0.835 D D 4 3 3.997 -0.517 -1.126 -0.590 CC_DT9DG10:DC3DA4_DD 9 0.430 -0.694 36.105 -0.862 1.891 3.209 33.765 C C 10 11 -4.421 D D 3 2 3.089 -2.546 -0.844 -0.271 CC_DG10DT11:DA2DC3_DD 10 -7.373 12.804 32.877 -0.064 0.288 3.235 39.876 C C 11 12 3.549 D D 2 1 3.214 2.410 0.412 0.028 CC_DT11DC12:DG1DA2_DD 11 6.186 -9.110 39.342 -0.236 0.105 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2010-12-08 1 1 2011-07-13 1 2 2023-09-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id apo structure of T. maritima RNase H2 T. maritima RNase H2 D107N in complex with nucleic acid substrate and magnesium ions RCSB Y RCSB 2010-07-24 REL REL CA CALCIUM ION HOH water 3O3F PDB entry 3O3F PDB experimental model CA 1 4 CA CA 1 A CA 2 4 CA CA 224 A CA 3 4 CA CA 225 A CA 5 4 CA CA 226 A CA 4 4 CA CA 13 C HOH 227 5 HOH HOH 227 A HOH 228 5 HOH HOH 228 A HOH 1 5 HOH HOH 229 A HOH 2 5 HOH HOH 230 A HOH 3 5 HOH HOH 231 A HOH 232 5 HOH HOH 232 A HOH 233 5 HOH HOH 233 A HOH 4 5 HOH HOH 234 A HOH 235 5 HOH HOH 235 A HOH 5 5 HOH HOH 236 A HOH 237 5 HOH HOH 237 A HOH 238 5 HOH HOH 238 A HOH 239 5 HOH HOH 239 A HOH 6 5 HOH HOH 240 A HOH 241 5 HOH HOH 241 A HOH 242 5 HOH HOH 242 A HOH 7 5 HOH HOH 243 A HOH 244 5 HOH HOH 244 A HOH 8 5 HOH HOH 245 A HOH 9 5 HOH HOH 246 A HOH 11 5 HOH HOH 247 A HOH 12 5 HOH HOH 248 A HOH 13 5 HOH HOH 249 A HOH 14 5 HOH HOH 250 A HOH 15 5 HOH HOH 251 A HOH 16 5 HOH HOH 252 A HOH 18 5 HOH HOH 253 A HOH 21 5 HOH HOH 254 A HOH 22 5 HOH HOH 255 A HOH 23 5 HOH HOH 256 A HOH 26 5 HOH HOH 257 A HOH 28 5 HOH HOH 258 A HOH 29 5 HOH HOH 259 A HOH 30 5 HOH HOH 260 A HOH 32 5 HOH HOH 261 A HOH 33 5 HOH HOH 262 A HOH 36 5 HOH HOH 263 A HOH 37 5 HOH HOH 264 A HOH 38 5 HOH HOH 265 A HOH 39 5 HOH HOH 266 A HOH 41 5 HOH HOH 267 A HOH 42 5 HOH HOH 268 A HOH 43 5 HOH HOH 269 A HOH 44 5 HOH HOH 270 A HOH 45 5 HOH HOH 271 A HOH 47 5 HOH HOH 272 A HOH 48 5 HOH HOH 273 A HOH 49 5 HOH HOH 274 A HOH 50 5 HOH HOH 275 A HOH 51 5 HOH HOH 276 A HOH 52 5 HOH HOH 277 A HOH 53 5 HOH HOH 278 A HOH 54 5 HOH HOH 279 A HOH 55 5 HOH HOH 280 A HOH 57 5 HOH HOH 281 A HOH 59 5 HOH HOH 282 A HOH 61 5 HOH HOH 283 A HOH 62 5 HOH HOH 284 A HOH 63 5 HOH HOH 285 A HOH 64 5 HOH HOH 286 A HOH 65 5 HOH HOH 287 A HOH 66 5 HOH HOH 288 A HOH 67 5 HOH HOH 289 A HOH 68 5 HOH HOH 290 A HOH 69 5 HOH HOH 291 A HOH 70 5 HOH HOH 292 A HOH 72 5 HOH HOH 293 A HOH 73 5 HOH HOH 294 A HOH 75 5 HOH HOH 295 A HOH 79 5 HOH HOH 296 A HOH 80 5 HOH HOH 297 A HOH 81 5 HOH HOH 298 A HOH 82 5 HOH HOH 299 A HOH 83 5 HOH HOH 300 A HOH 84 5 HOH HOH 301 A HOH 86 5 HOH HOH 302 A HOH 87 5 HOH HOH 303 A HOH 88 5 HOH HOH 304 A HOH 89 5 HOH HOH 305 A HOH 90 5 HOH HOH 306 A HOH 95 5 HOH HOH 307 A HOH 96 5 HOH HOH 308 A HOH 98 5 HOH HOH 309 A HOH 102 5 HOH HOH 310 A HOH 104 5 HOH HOH 311 A HOH 105 5 HOH HOH 312 A HOH 106 5 HOH HOH 313 A HOH 107 5 HOH HOH 314 A HOH 108 5 HOH HOH 315 A HOH 110 5 HOH HOH 316 A HOH 113 5 HOH HOH 317 A HOH 115 5 HOH HOH 318 A HOH 116 5 HOH HOH 319 A HOH 117 5 HOH HOH 320 A HOH 118 5 HOH HOH 321 A HOH 119 5 HOH HOH 322 A HOH 120 5 HOH HOH 323 A HOH 125 5 HOH HOH 324 A HOH 128 5 HOH HOH 325 A HOH 130 5 HOH HOH 326 A HOH 131 5 HOH HOH 327 A HOH 132 5 HOH HOH 328 A HOH 133 5 HOH HOH 329 A HOH 134 5 HOH HOH 330 A HOH 136 5 HOH HOH 331 A HOH 137 5 HOH HOH 332 A HOH 139 5 HOH HOH 333 A HOH 140 5 HOH HOH 334 A HOH 141 5 HOH HOH 335 A HOH 143 5 HOH HOH 336 A HOH 145 5 HOH HOH 337 A HOH 146 5 HOH HOH 338 A HOH 147 5 HOH HOH 339 A HOH 149 5 HOH HOH 340 A HOH 150 5 HOH HOH 341 A HOH 151 5 HOH HOH 342 A HOH 152 5 HOH HOH 343 A HOH 153 5 HOH HOH 344 A HOH 156 5 HOH HOH 345 A HOH 157 5 HOH HOH 346 A HOH 159 5 HOH HOH 347 A HOH 162 5 HOH HOH 348 A HOH 163 5 HOH HOH 349 A HOH 164 5 HOH HOH 350 A HOH 165 5 HOH HOH 351 A HOH 167 5 HOH HOH 352 A HOH 170 5 HOH HOH 353 A HOH 171 5 HOH HOH 354 A HOH 172 5 HOH HOH 355 A HOH 173 5 HOH HOH 356 A HOH 174 5 HOH HOH 357 A HOH 175 5 HOH HOH 358 A HOH 176 5 HOH HOH 359 A HOH 177 5 HOH HOH 360 A HOH 178 5 HOH HOH 361 A HOH 179 5 HOH HOH 362 A HOH 180 5 HOH HOH 363 A HOH 183 5 HOH HOH 364 A HOH 184 5 HOH HOH 365 A HOH 186 5 HOH HOH 366 A HOH 187 5 HOH HOH 367 A HOH 189 5 HOH HOH 368 A HOH 190 5 HOH HOH 369 A HOH 191 5 HOH HOH 370 A HOH 192 5 HOH HOH 371 A HOH 194 5 HOH HOH 372 A HOH 197 5 HOH HOH 373 A HOH 199 5 HOH HOH 374 A HOH 200 5 HOH HOH 375 A HOH 201 5 HOH HOH 376 A HOH 202 5 HOH HOH 377 A HOH 203 5 HOH HOH 378 A HOH 204 5 HOH HOH 379 A HOH 205 5 HOH HOH 380 A HOH 206 5 HOH HOH 381 A HOH 207 5 HOH HOH 382 A HOH 208 5 HOH HOH 383 A HOH 210 5 HOH HOH 384 A HOH 212 5 HOH HOH 385 A HOH 213 5 HOH HOH 386 A HOH 214 5 HOH HOH 387 A HOH 215 5 HOH HOH 388 A HOH 217 5 HOH HOH 389 A HOH 218 5 HOH HOH 390 A HOH 220 5 HOH HOH 391 A HOH 221 5 HOH HOH 392 A HOH 222 5 HOH HOH 393 A HOH 223 5 HOH HOH 394 A HOH 224 5 HOH HOH 395 A HOH 225 5 HOH HOH 396 A HOH 226 5 HOH HOH 397 A HOH 10 5 HOH HOH 14 C HOH 17 5 HOH HOH 17 C HOH 25 5 HOH HOH 25 C HOH 31 5 HOH HOH 31 C HOH 34 5 HOH HOH 34 C HOH 46 5 HOH HOH 46 C HOH 56 5 HOH HOH 56 C HOH 71 5 HOH HOH 71 C HOH 78 5 HOH HOH 78 C HOH 85 5 HOH HOH 85 C HOH 101 5 HOH HOH 101 C HOH 103 5 HOH HOH 103 C HOH 112 5 HOH HOH 112 C HOH 123 5 HOH HOH 123 C HOH 126 5 HOH HOH 126 C HOH 127 5 HOH HOH 127 C HOH 142 5 HOH HOH 142 C HOH 148 5 HOH HOH 148 C HOH 161 5 HOH HOH 161 C HOH 166 5 HOH HOH 166 C HOH 181 5 HOH HOH 181 C HOH 195 5 HOH HOH 195 C HOH 209 5 HOH HOH 209 C HOH 211 5 HOH HOH 211 C HOH 229 5 HOH HOH 229 C HOH 231 5 HOH HOH 231 C HOH 234 5 HOH HOH 234 C HOH 243 5 HOH HOH 243 C HOH 19 5 HOH HOH 19 D HOH 20 5 HOH HOH 20 D HOH 24 5 HOH HOH 24 D HOH 27 5 HOH HOH 27 D HOH 35 5 HOH HOH 35 D HOH 40 5 HOH HOH 40 D HOH 58 5 HOH HOH 58 D HOH 60 5 HOH HOH 60 D HOH 74 5 HOH HOH 74 D HOH 76 5 HOH HOH 76 D HOH 77 5 HOH HOH 77 D HOH 91 5 HOH HOH 91 D HOH 92 5 HOH HOH 92 D HOH 93 5 HOH HOH 93 D HOH 94 5 HOH HOH 94 D HOH 97 5 HOH HOH 97 D HOH 99 5 HOH HOH 99 D HOH 100 5 HOH HOH 100 D HOH 109 5 HOH HOH 109 D HOH 111 5 HOH HOH 111 D HOH 114 5 HOH HOH 114 D HOH 121 5 HOH HOH 121 D HOH 122 5 HOH HOH 122 D HOH 124 5 HOH HOH 124 D HOH 129 5 HOH HOH 129 D HOH 135 5 HOH HOH 135 D HOH 138 5 HOH HOH 138 D HOH 144 5 HOH HOH 144 D HOH 154 5 HOH HOH 154 D HOH 155 5 HOH HOH 155 D HOH 158 5 HOH HOH 158 D HOH 160 5 HOH HOH 160 D HOH 168 5 HOH HOH 168 D HOH 169 5 HOH HOH 169 D HOH 182 5 HOH HOH 182 D HOH 185 5 HOH HOH 185 D HOH 188 5 HOH HOH 188 D HOH 193 5 HOH HOH 193 D HOH 196 5 HOH HOH 196 D HOH 198 5 HOH HOH 198 D HOH 216 5 HOH HOH 216 D HOH 219 5 HOH HOH 219 D HOH 230 5 HOH HOH 230 D HOH 236 5 HOH HOH 236 D HOH 240 5 HOH HOH 240 D GLY 2 n 1 GLY 2 A ILE 3 n 2 ILE 3 A ASP 4 n 3 ASP 4 A GLU 5 n 4 GLU 5 A LEU 6 n 5 LEU 6 A TYR 7 n 6 TYR 7 A LYS 8 n 7 LYS 8 A LYS 9 n 8 LYS 9 A GLU 10 n 9 GLU 10 A PHE 11 n 10 PHE 11 A GLY 12 n 11 GLY 12 A ILE 13 n 12 ILE 13 A VAL 14 n 13 VAL 14 A ALA 15 n 14 ALA 15 A GLY 16 n 15 GLY 16 A VAL 17 n 16 VAL 17 A ASP 18 n 17 ASP 18 A GLU 19 n 18 GLU 19 A ALA 20 n 19 ALA 20 A GLY 21 n 20 GLY 21 A ARG 22 n 21 ARG 22 A GLY 23 n 22 GLY 23 A CYS 24 n 23 CYS 24 A LEU 25 n 24 LEU 25 A ALA 26 n 25 ALA 26 A GLY 27 n 26 GLY 27 A PRO 28 n 27 PRO 28 A VAL 29 n 28 VAL 29 A VAL 30 n 29 VAL 30 A ALA 31 n 30 ALA 31 A ALA 32 n 31 ALA 32 A ALA 33 n 32 ALA 33 A VAL 34 n 33 VAL 34 A VAL 35 n 34 VAL 35 A LEU 36 n 35 LEU 36 A GLU 37 n 36 GLU 37 A LYS 38 n 37 LYS 38 A GLU 39 n 38 GLU 39 A ILE 40 n 39 ILE 40 A GLU 41 n 40 GLU 41 A GLY 42 n 41 GLY 42 A ILE 43 n 42 ILE 43 A ASN 44 n 43 ASN 44 A ASP 45 n 44 ASP 45 A SER 46 n 45 SER 46 A LYS 47 n 46 LYS 47 A GLN 48 n 47 GLN 48 A LEU 49 n 48 LEU 49 A SER 50 n 49 SER 50 A PRO 51 n 50 PRO 51 A ALA 52 n 51 ALA 52 A LYS 53 n 52 LYS 53 A ARG 54 n 53 ARG 54 A GLU 55 n 54 GLU 55 A ARG 56 n 55 ARG 56 A LEU 57 n 56 LEU 57 A LEU 58 n 57 LEU 58 A ASP 59 n 58 ASP 59 A GLU 60 n 59 GLU 60 A ILE 61 n 60 ILE 61 A MET 62 n 61 MET 62 A GLU 63 n 62 GLU 63 A LYS 64 n 63 LYS 64 A ALA 65 n 64 ALA 65 A ALA 66 n 65 ALA 66 A VAL 67 n 66 VAL 67 A GLY 68 n 67 GLY 68 A ILE 69 n 68 ILE 69 A GLY 70 n 69 GLY 70 A ILE 71 n 70 ILE 71 A ALA 72 n 71 ALA 72 A SER 73 n 72 SER 73 A PRO 74 n 73 PRO 74 A GLU 75 n 74 GLU 75 A GLU 76 n 75 GLU 76 A ILE 77 n 76 ILE 77 A ASP 78 n 77 ASP 78 A LEU 79 n 78 LEU 79 A TYR 80 n 79 TYR 80 A ASN 81 n 80 ASN 81 A ILE 82 n 81 ILE 82 A PHE 83 n 82 PHE 83 A ASN 84 n 83 ASN 84 A ALA 85 n 84 ALA 85 A THR 86 n 85 THR 86 A LYS 87 n 86 LYS 87 A LEU 88 n 87 LEU 88 A ALA 89 n 88 ALA 89 A MET 90 n 89 MET 90 A ASN 91 n 90 ASN 91 A ARG 92 n 91 ARG 92 A ALA 93 n 92 ALA 93 A LEU 94 n 93 LEU 94 A GLU 95 n 94 GLU 95 A ASN 96 n 95 ASN 96 A LEU 97 n 96 LEU 97 A SER 98 n 97 SER 98 A VAL 99 n 98 VAL 99 A LYS 100 n 99 LYS 100 A PRO 101 n 100 PRO 101 A SER 102 n 101 SER 102 A PHE 103 n 102 PHE 103 A VAL 104 n 103 VAL 104 A LEU 105 n 104 LEU 105 A VAL 106 n 105 VAL 106 A ASP 107 n 106 ASP 107 A GLY 108 n 107 GLY 108 A LYS 109 n 108 LYS 109 A GLY 110 n 109 GLY 110 A ILE 111 n 110 ILE 111 A GLU 112 n 111 GLU 112 A LEU 113 n 112 LEU 113 A SER 114 n 113 SER 114 A VAL 115 n 114 VAL 115 A PRO 116 n 115 PRO 116 A GLY 117 n 116 GLY 117 A THR 118 n 117 THR 118 A CYS 119 n 118 CYS 119 A LEU 120 n 119 LEU 120 A VAL 121 n 120 VAL 121 A LYS 122 n 121 LYS 122 A GLY 123 n 122 GLY 123 A ASP 124 n 123 ASP 124 A GLN 125 n 124 GLN 125 A LYS 126 n 125 LYS 126 A SER 127 n 126 SER 127 A LYS 128 n 127 LYS 128 A LEU 129 n 128 LEU 129 A ILE 130 n 129 ILE 130 A GLY 131 n 130 GLY 131 A ALA 132 n 131 ALA 132 A ALA 133 n 132 ALA 133 A SER 134 n 133 SER 134 A ILE 135 n 134 ILE 135 A VAL 136 n 135 VAL 136 A ALA 137 n 136 ALA 137 A LYS 138 n 137 LYS 138 A VAL 139 n 138 VAL 139 A PHE 140 n 139 PHE 140 A ARG 141 n 140 ARG 141 A ASP 142 n 141 ASP 142 A ARG 143 n 142 ARG 143 A LEU 144 n 143 LEU 144 A MET 145 n 144 MET 145 A SER 146 n 145 SER 146 A GLU 147 n 146 GLU 147 A PHE 148 n 147 PHE 148 A HIS 149 n 148 HIS 149 A ARG 150 n 149 ARG 150 A MET 151 n 150 MET 151 A TYR 152 n 151 TYR 152 A PRO 153 n 152 PRO 153 A GLN 154 n 153 GLN 154 A PHE 155 n 154 PHE 155 A SER 156 n 155 SER 156 A PHE 157 n 156 PHE 157 A HIS 158 n 157 HIS 158 A LYS 159 n 158 LYS 159 A HIS 160 n 159 HIS 160 A LYS 161 n 160 LYS 161 A GLY 162 n 161 GLY 162 A TYR 163 n 162 TYR 163 A ALA 164 n 163 ALA 164 A THR 165 n 164 THR 165 A LYS 166 n 165 LYS 166 A GLU 167 n 166 GLU 167 A HIS 168 n 167 HIS 168 A LEU 169 n 168 LEU 169 A ASN 170 n 169 ASN 170 A GLU 171 n 170 GLU 171 A ILE 172 n 171 ILE 172 A ARG 173 n 172 ARG 173 A LYS 174 n 173 LYS 174 A ASN 175 n 174 ASN 175 A GLY 176 n 175 GLY 176 A VAL 177 n 176 VAL 177 A LEU 178 n 177 LEU 178 A PRO 179 n 178 PRO 179 A ILE 180 n 179 ILE 180 A HIS 181 n 180 HIS 181 A ARG 182 n 181 ARG 182 A LEU 183 n 182 LEU 183 A SER 184 n 183 SER 184 A PHE 185 n 184 PHE 185 A GLU 186 n 185 GLU 186 A PRO 187 n 186 PRO 187 A VAL 188 n 187 VAL 188 A LEU 189 n 188 LEU 189 A GLU 190 n 189 GLU 190 A LEU 191 n 190 LEU 191 A LEU 192 n 191 LEU 192 A THR 193 n 192 THR 193 A ASP 194 n 193 ASP 194 A ASP 195 n 194 ASP 195 A LEU 196 n 195 LEU 196 A LEU 197 n 196 LEU 197 A ARG 198 n 197 ARG 198 A GLU 199 n 198 GLU 199 A PHE 200 n 199 PHE 200 A PHE 201 n 200 PHE 201 A GLU 202 n 201 GLU 202 A LYS 203 n 202 LYS 203 A GLY 204 n 203 GLY 204 A LEU 205 n 204 LEU 205 A ILE 206 n 205 ILE 206 A SER 207 n 206 SER 207 A GLU 208 n 207 GLU 208 A ASN 209 n 208 ASN 209 A ARG 210 n 209 ARG 210 A PHE 211 n 210 PHE 211 A GLU 212 n 211 GLU 212 A ARG 213 n 212 ARG 213 A ILE 214 n 213 ILE 214 A LEU 215 n 214 LEU 215 A ASN 216 n 215 ASN 216 A LEU 217 n 216 LEU 217 A LEU 218 n 217 LEU 218 A GLY 219 n 218 GLY 219 A ALA 220 n 219 ALA 220 A ARG 221 n 220 ARG 221 A LYS 222 n 221 LYS 222 A SER 223 n 222 SER 223 A DG 1 n 1 DG 1 C DA 2 n 2 DA 2 C DA 3 n 3 DA 3 C DT 4 n 4 DT 4 C DC 5 n 5 DC 5 C DA 6 n 6 DA 6 C DG 7 n 7 DG 7 C DG 8 n 8 DG 8 C DT 9 n 9 DT 9 C DG 10 n 10 DG 10 C DT 11 n 11 DT 11 C DC 12 n 12 DC 12 C DG 1 n 1 DG 1 D DA 2 n 2 DA 2 D DC 3 n 3 DC 3 D DA 4 n 4 DA 4 D DC 5 n 5 DC 5 D C 6 n 6 C 6 D DT 7 n 7 DT 7 D DG 8 n 8 DG 8 D DA 9 n 9 DA 9 D DT 10 n 10 DT 10 D DT 11 n 11 DT 11 D DC 12 n 12 DC 12 D author_and_software_defined_assembly PISA 3 trimeric 3830 -72 13180 A ASP 18 A OD1 ASP 17 1_555 A CA 1 D CA CA 1_555 A GLU 19 A O GLU 18 1_555 93.4 A ASP 18 A OD1 ASP 17 1_555 A CA 1 D CA CA 1_555 A HOH 229 I O HOH 1_555 83.1 A GLU 19 A O GLU 18 1_555 A CA 1 D CA CA 1_555 A HOH 229 I O HOH 1_555 175.9 A ASP 18 A OD1 ASP 17 1_555 A CA 1 D CA CA 1_555 A HOH 230 I O HOH 1_555 88.7 A GLU 19 A O GLU 18 1_555 A CA 1 D CA CA 1_555 A HOH 230 I O HOH 1_555 84.0 A HOH 229 I O HOH 1_555 A CA 1 D CA CA 1_555 A HOH 230 I O HOH 1_555 93.8 A ASP 18 A OD1 ASP 17 1_555 A CA 1 D CA CA 1_555 D C 6 C OP1 C 6 1_555 105.0 A GLU 19 A O GLU 18 1_555 A CA 1 D CA CA 1_555 D C 6 C OP1 C 6 1_555 102.6 A HOH 229 I O HOH 1_555 A CA 1 D CA CA 1_555 D C 6 C OP1 C 6 1_555 80.5 A HOH 230 I O HOH 1_555 A CA 1 D CA CA 1_555 D C 6 C OP1 C 6 1_555 164.2 A ASP 18 A OD1 ASP 17 1_555 A CA 1 D CA CA 1_555 D DT 7 C OP2 DT 7 1_555 162.2 A GLU 19 A O GLU 18 1_555 A CA 1 D CA CA 1_555 D DT 7 C OP2 DT 7 1_555 92.6 A HOH 229 I O HOH 1_555 A CA 1 D CA CA 1_555 D DT 7 C OP2 DT 7 1_555 90.2 A HOH 230 I O HOH 1_555 A CA 1 D CA CA 1_555 D DT 7 C OP2 DT 7 1_555 75.2 D C 6 C OP1 C 6 1_555 A CA 1 D CA CA 1_555 D DT 7 C OP2 DT 7 1_555 90.0 A ASP 18 A OD2 ASP 17 1_555 A CA 224 E CA CA 1_555 A GLU 19 A OE2 GLU 18 1_555 85.9 A ASP 18 A OD2 ASP 17 1_555 A CA 224 E CA CA 1_555 A ASP 107 A OD2 ASP 106 1_555 62.2 A GLU 19 A OE2 GLU 18 1_555 A CA 224 E CA CA 1_555 A ASP 107 A OD2 ASP 106 1_555 147.5 A ASP 18 A OD2 ASP 17 1_555 A CA 224 E CA CA 1_555 A HOH 238 I O HOH 1_555 127.8 A GLU 19 A OE2 GLU 18 1_555 A CA 224 E CA CA 1_555 A HOH 238 I O HOH 1_555 66.3 A ASP 107 A OD2 ASP 106 1_555 A CA 224 E CA CA 1_555 A HOH 238 I O HOH 1_555 127.9 A ASP 18 A OD2 ASP 17 1_555 A CA 224 E CA CA 1_555 D DC 5 C O3' DC 5 1_555 133.9 A GLU 19 A OE2 GLU 18 1_555 A CA 224 E CA CA 1_555 D DC 5 C O3' DC 5 1_555 113.5 A ASP 107 A OD2 ASP 106 1_555 A CA 224 E CA CA 1_555 D DC 5 C O3' DC 5 1_555 94.5 A HOH 238 I O HOH 1_555 A CA 224 E CA CA 1_555 D DC 5 C O3' DC 5 1_555 98.1 A ASP 18 A OD2 ASP 17 1_555 A CA 224 E CA CA 1_555 D C 6 C OP1 C 6 1_555 80.0 A GLU 19 A OE2 GLU 18 1_555 A CA 224 E CA CA 1_555 D C 6 C OP1 C 6 1_555 105.1 A ASP 107 A OD2 ASP 106 1_555 A CA 224 E CA CA 1_555 D C 6 C OP1 C 6 1_555 76.8 A HOH 238 I O HOH 1_555 A CA 224 E CA CA 1_555 D C 6 C OP1 C 6 1_555 147.8 D DC 5 C O3' DC 5 1_555 A CA 224 E CA CA 1_555 D C 6 C OP1 C 6 1_555 55.3 A ASP 124 A OD2 ASP 123 1_555 A CA 225 F CA CA 1_555 A ASP 124 A OD1 ASP 123 1_555 41.4 A ASP 124 A OD2 ASP 123 1_555 A CA 225 F CA CA 1_555 A HOH 266 I O HOH 1_555 59.0 A ASP 124 A OD1 ASP 123 1_555 A CA 225 F CA CA 1_555 A HOH 266 I O HOH 1_555 86.6 A ASP 124 A OD2 ASP 123 1_555 A CA 225 F CA CA 1_555 D C 6 C OP2 C 6 1_555 78.8 A ASP 124 A OD1 ASP 123 1_555 A CA 225 F CA CA 1_555 D C 6 C OP2 C 6 1_555 119.8 A HOH 266 I O HOH 1_555 A CA 225 F CA CA 1_555 D C 6 C OP2 C 6 1_555 60.5 A ASP 124 A OD2 ASP 123 1_555 A CA 225 F CA CA 1_555 D HOH 182 K O HOH 1_555 75.3 A ASP 124 A OD1 ASP 123 1_555 A CA 225 F CA CA 1_555 D HOH 182 K O HOH 1_555 81.3 A HOH 266 I O HOH 1_555 A CA 225 F CA CA 1_555 D HOH 182 K O HOH 1_555 121.2 D C 6 C OP2 C 6 1_555 A CA 225 F CA CA 1_555 D HOH 182 K O HOH 1_555 76.9 A HOH 233 I O HOH 1_555 C CA 13 H CA CA 1_555 A HOH 235 I O HOH 1_555 118.4 A HOH 233 I O HOH 1_555 C CA 13 H CA CA 1_555 A HOH 239 I O HOH 1_555 82.5 A HOH 235 I O HOH 1_555 C CA 13 H CA CA 1_555 A HOH 239 I O HOH 1_555 76.2 A HOH 233 I O HOH 1_555 C CA 13 H CA CA 1_555 A HOH 312 I O HOH 1_555 59.7 A HOH 235 I O HOH 1_555 C CA 13 H CA CA 1_555 A HOH 312 I O HOH 1_555 78.0 A HOH 239 I O HOH 1_555 C CA 13 H CA CA 1_555 A HOH 312 I O HOH 1_555 114.3 A HOH 233 I O HOH 1_555 C CA 13 H CA CA 1_555 C HOH 234 J O HOH 1_555 156.3 A HOH 235 I O HOH 1_555 C CA 13 H CA CA 1_555 C HOH 234 J O HOH 1_555 83.5 A HOH 239 I O HOH 1_555 C CA 13 H CA CA 1_555 C HOH 234 J O HOH 1_555 95.0 A HOH 312 I O HOH 1_555 C CA 13 H CA CA 1_555 C HOH 234 J O HOH 1_555 139.9 A HOH 233 I O HOH 1_555 C CA 13 H CA CA 1_555 D HOH 129 K O HOH 1_555 92.9 A HOH 235 I O HOH 1_555 C CA 13 H CA CA 1_555 D HOH 129 K O HOH 1_555 120.6 A HOH 239 I O HOH 1_555 C CA 13 H CA CA 1_555 D HOH 129 K O HOH 1_555 162.2 A HOH 312 I O HOH 1_555 C CA 13 H CA CA 1_555 D HOH 129 K O HOH 1_555 77.3 C HOH 234 J O HOH 1_555 C CA 13 H CA CA 1_555 D HOH 129 K O HOH 1_555 82.3 A HOH 233 I O HOH 1_555 C CA 13 H CA CA 1_555 D HOH 236 K O HOH 1_555 80.7 A HOH 235 I O HOH 1_555 C CA 13 H CA CA 1_555 D HOH 236 K O HOH 1_555 151.9 A HOH 239 I O HOH 1_555 C CA 13 H CA CA 1_555 D HOH 236 K O HOH 1_555 87.0 A HOH 312 I O HOH 1_555 C CA 13 H CA CA 1_555 D HOH 236 K O HOH 1_555 129.9 C HOH 234 J O HOH 1_555 C CA 13 H CA CA 1_555 D HOH 236 K O HOH 1_555 75.6 D HOH 129 K O HOH 1_555 C CA 13 H CA CA 1_555 D HOH 236 K O HOH 1_555 75.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLY 68 A O GLY 67 A N ALA 33 A N ALA 32 A O VAL 30 A O VAL 29 A N ALA 20 A N ALA 19 A N ALA 15 A N ALA 14 A O LEU 105 A O LEU 104 A N VAL 106 A N VAL 105 A O THR 118 A O THR 117 1 D HOH 122 K HOH 1 A CG GLU 5 A CG GLU 4 1 Y 1 A CD GLU 5 A CD GLU 4 1 Y 1 A OE1 GLU 5 A OE1 GLU 4 1 Y 1 A OE2 GLU 5 A OE2 GLU 4 1 Y 1 A CG GLU 41 A CG GLU 40 1 Y 1 A CD GLU 41 A CD GLU 40 1 Y 1 A OE1 GLU 41 A OE1 GLU 40 1 Y 1 A OE2 GLU 41 A OE2 GLU 40 1 Y 1 A CG ARG 56 A CG ARG 55 1 Y 1 A CD ARG 56 A CD ARG 55 1 Y 1 A NE ARG 56 A NE ARG 55 1 Y 1 A CZ ARG 56 A CZ ARG 55 1 Y 1 A NH1 ARG 56 A NH1 ARG 55 1 Y 1 A NH2 ARG 56 A NH2 ARG 55 1 Y 1 A CG GLU 202 A CG GLU 201 1 Y 1 A CD GLU 202 A CD GLU 201 1 Y 1 A OE1 GLU 202 A OE1 GLU 201 1 Y 1 A OE2 GLU 202 A OE2 GLU 201 1 Y 1 5.26 0.30 108.30 113.56 C C C O4' C1' N1 DT DT DT 4 4 4 N 1 2.47 0.30 108.30 110.77 C C C O4' C1' N1 DC DC DC 5 5 5 N 1 11.11 0.30 108.30 119.41 C C C O4' C1' N9 DG DG DG 7 7 7 N 1 1.85 0.30 108.30 110.15 C C C O4' C1' N9 DG DG DG 10 10 10 N 1 2.10 0.30 108.30 110.40 C C C O4' C1' N1 DT DT DT 11 11 11 N 1 2.09 0.30 108.30 110.39 D D D O4' C1' N9 DA DA DA 2 2 2 N 1 -6.19 0.80 102.40 96.21 D D D C3' C2' C1' DC DC DC 3 3 3 N 1 5.28 0.30 108.30 113.58 D D D O4' C1' N1 DC DC DC 3 3 3 N 1 3.86 0.30 108.30 112.16 D D D O4' C1' N9 DA DA DA 4 4 4 N 1 -3.77 0.40 104.50 100.73 D D D O4' C4' C3' DC DC DC 5 5 5 N 1 -4.22 0.70 102.20 97.98 D D D C4' C3' C2' DC DC DC 5 5 5 N 1 3.78 0.60 119.90 123.68 D D D N3 C4 O4 DT DT DT 7 7 7 N 1 -4.37 0.70 124.90 120.53 D D D C5 C4 O4 DT DT DT 7 7 7 N 1 2.75 0.30 108.30 111.05 D D D O4' C1' N1 DT DT DT 11 11 11 N 1 A ASP 45 169.56 -132.32 1 A SER 46 -156.59 -54.48 1 A ASN 81 80.47 158.05 -6.4574 0.0000 -2.1543 15.4760 -0.0000 -9.0186 0.2452 0.1709 0.1747 2.100 28.750 816 17025 15873 5.14 93.23 0.27 1 0.11 MOLECULAR REPLACEMENT 25.73 0.90 1.11 PDB entry 3O3F ML FLAT BULK SOLVENT MODEL 53.350 0.335 2.100 28.750 244 2452 5 487 1716 0.008 2310 1.254 3214 18.706 913 0.077 365 0.004 331 0.2870 0.2076 2.2315 117 2321 86.00 0.3074 0.1932 2.4038 128 2372 89.00 0.2569 0.1885 2.6455 135 2458 93.00 0.2704 0.1886 3.0280 130 2571 96.00 0.2276 0.1545 3.8135 156 2633 98.00 0.2168 0.1537 28.7527 150 2702 98.00 2.1 50 3O3G 17131 16994 2 2 0.086 1 20.5 3.6 99.2 0.484 2.1 2.14 2.8 3.4 98.8 data collection ADSC Quantum phasing PHASER refinement PHENIX (phenix.refine: 1.6.1_357) data reduction HKL-2000 data scaling HKL-2000 T. maritima RNase H2 in complex with nucleic acid substrate and calcium ions 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N 5 N N 5 N N A GLY 2 A GLY 1 HELX_P A GLY 12 A GLY 11 1 1 11 A SER 50 A SER 49 HELX_P A LYS 64 A LYS 63 1 2 15 A SER 73 A SER 72 HELX_P A ASN 96 A ASN 95 1 3 24 A LYS 122 A LYS 121 HELX_P A LYS 126 A LYS 125 5 4 5 A SER 127 A SER 126 HELX_P A TYR 152 A TYR 151 1 5 26 A SER 156 A SER 155 HELX_P A LYS 161 A LYS 160 1 6 6 A THR 165 A THR 164 HELX_P A GLY 176 A GLY 175 1 7 12 A PHE 185 A PHE 184 HELX_P A GLU 190 A GLU 189 1 8 6 A THR 193 A THR 192 HELX_P A LYS 203 A LYS 202 1 9 11 A SER 207 A SER 206 HELX_P A ARG 221 A ARG 220 1 10 15 metalc 2.440 A CA 1 D CA CA 1_555 A ASP 18 A OD1 ASP 17 1_555 metalc 2.479 A CA 1 D CA CA 1_555 A GLU 19 A O GLU 18 1_555 metalc 2.587 A CA 1 D CA CA 1_555 A HOH 229 I O HOH 1_555 metalc 2.610 A CA 1 D CA CA 1_555 A HOH 230 I O HOH 1_555 metalc 2.384 A CA 1 D CA CA 1_555 D C 6 C OP1 C 6 1_555 metalc 2.472 A CA 1 D CA CA 1_555 D DT 7 C OP2 DT 7 1_555 metalc 2.493 A ASP 18 A OD2 ASP 17 1_555 A CA 224 E CA CA 1_555 metalc 2.453 A GLU 19 A OE2 GLU 18 1_555 A CA 224 E CA CA 1_555 metalc 2.573 A ASP 107 A OD2 ASP 106 1_555 A CA 224 E CA CA 1_555 metalc 3.067 A ASP 124 A OD2 ASP 123 1_555 A CA 225 F CA CA 1_555 metalc 3.187 A ASP 124 A OD1 ASP 123 1_555 A CA 225 F CA CA 1_555 metalc 3.178 A CA 224 E CA CA 1_555 A HOH 238 I O HOH 1_555 metalc 2.727 A CA 224 E CA CA 1_555 D DC 5 C O3' DC 5 1_555 metalc 2.571 A CA 224 E CA CA 1_555 D C 6 C OP1 C 6 1_555 metalc 2.779 A CA 225 F CA CA 1_555 A HOH 266 I O HOH 1_555 metalc 2.995 A CA 225 F CA CA 1_555 D C 6 C OP2 C 6 1_555 metalc 2.674 A CA 225 F CA CA 1_555 D HOH 182 K O HOH 1_555 metalc 2.666 A HOH 233 I O HOH 1_555 C CA 13 H CA CA 1_555 metalc 2.623 A HOH 235 I O HOH 1_555 C CA 13 H CA CA 1_555 metalc 2.599 A HOH 239 I O HOH 1_555 C CA 13 H CA CA 1_555 metalc 3.065 A HOH 312 I O HOH 1_555 C CA 13 H CA CA 1_555 metalc 2.740 C CA 13 H CA CA 1_555 C HOH 234 J O HOH 1_555 metalc 2.725 C CA 13 H CA CA 1_555 D HOH 129 K O HOH 1_555 metalc 2.827 C CA 13 H CA CA 1_555 D HOH 236 K O HOH 1_555 hydrog WATSON-CRICK C DG 1 B N1 DG 1 1_555 D DC 12 C N3 DC 12 1_555 hydrog WATSON-CRICK C DG 1 B N2 DG 1 1_555 D DC 12 C O2 DC 12 1_555 hydrog WATSON-CRICK C DG 1 B O6 DG 1 1_555 D DC 12 C N4 DC 12 1_555 hydrog WATSON-CRICK C DA 2 B N1 DA 2 1_555 D DT 11 C N3 DT 11 1_555 hydrog WATSON-CRICK C DA 2 B N6 DA 2 1_555 D DT 11 C O4 DT 11 1_555 hydrog WATSON-CRICK C DA 3 B N1 DA 3 1_555 D DT 10 C N3 DT 10 1_555 hydrog WATSON-CRICK C DA 3 B N6 DA 3 1_555 D DT 10 C O4 DT 10 1_555 hydrog WATSON-CRICK C DT 4 B N3 DT 4 1_555 D DA 9 C N1 DA 9 1_555 hydrog WATSON-CRICK C DT 4 B O4 DT 4 1_555 D DA 9 C N6 DA 9 1_555 hydrog WATSON-CRICK C DC 5 B N3 DC 5 1_555 D DG 8 C N1 DG 8 1_555 hydrog WATSON-CRICK C DC 5 B N4 DC 5 1_555 D DG 8 C O6 DG 8 1_555 hydrog WATSON-CRICK C DC 5 B O2 DC 5 1_555 D DG 8 C N2 DG 8 1_555 hydrog WATSON-CRICK C DA 6 B N1 DA 6 1_555 D DT 7 C N3 DT 7 1_555 hydrog WATSON-CRICK C DA 6 B N6 DA 6 1_555 D DT 7 C O4 DT 7 1_555 hydrog WATSON-CRICK C DG 7 B N1 DG 7 1_555 D C 6 C N3 C 6 1_555 hydrog WATSON-CRICK C DG 7 B N2 DG 7 1_555 D C 6 C O2 C 6 1_555 hydrog WATSON-CRICK C DG 7 B O6 DG 7 1_555 D C 6 C N4 C 6 1_555 hydrog WATSON-CRICK C DG 8 B N1 DG 8 1_555 D DC 5 C N3 DC 5 1_555 hydrog WATSON-CRICK C DG 8 B N2 DG 8 1_555 D DC 5 C O2 DC 5 1_555 hydrog WATSON-CRICK C DG 8 B O6 DG 8 1_555 D DC 5 C N4 DC 5 1_555 hydrog WATSON-CRICK C DT 9 B N3 DT 9 1_555 D DA 4 C N1 DA 4 1_555 hydrog WATSON-CRICK C DT 9 B O4 DT 9 1_555 D DA 4 C N6 DA 4 1_555 hydrog WATSON-CRICK C DG 10 B N1 DG 10 1_555 D DC 3 C N3 DC 3 1_555 hydrog WATSON-CRICK C DG 10 B N2 DG 10 1_555 D DC 3 C O2 DC 3 1_555 hydrog WATSON-CRICK C DG 10 B O6 DG 10 1_555 D DC 3 C N4 DC 3 1_555 hydrog WATSON-CRICK C DT 11 B N3 DT 11 1_555 D DA 2 C N1 DA 2 1_555 hydrog WATSON-CRICK C DT 11 B O4 DT 11 1_555 D DA 2 C N6 DA 2 1_555 hydrog WATSON-CRICK C DC 12 B N3 DC 12 1_555 D DG 1 C N1 DG 1 1_555 hydrog WATSON-CRICK C DC 12 B N4 DC 12 1_555 D DG 1 C O6 DG 1 1_555 hydrog WATSON-CRICK C DC 12 B O2 DC 12 1_555 D DG 1 C N2 DG 1 1_555 HYDROLASE/DNA-RNA hybrid RNase H fold, nuclease, HYDROLASE-DNA-RNA hybrid complex A ARG 221 A ARG 220 1 A LYS 222 A LYS 221 -6.32 A ARG 221 A ARG 220 1 A LYS 222 A LYS 221 -6.82 RNH2_THEMA UNP 1 2 Q9X017 GIDELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKEIEGINDSKQLSPAKRERLLDEIMEKAAVGIGIASPEEIDLYN IFNATKLAMNRALENLSVKPSFVLVDGKGIELSVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHK GYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLLREFFEKGLISENRFERILNLLGARKS 3O3G PDB 2 3O3G 3O3G PDB 3 3O3G 2 223 3O3G 2 223 Q9X017 A 1 1 222 1 12 3O3G 1 12 3O3G C 2 1 12 1 12 3O3G 1 12 3O3G D 3 1 12 5 anti-parallel anti-parallel parallel parallel A ALA 65 A ALA 64 A ALA 72 A ALA 71 A VAL 29 A VAL 28 A LEU 36 A LEU 35 A VAL 14 A VAL 13 A ALA 20 A ALA 19 A PHE 103 A PHE 102 A ASP 107 A ASP 106 A GLY 117 A GLY 116 A LEU 120 A LEU 119 BINDING SITE FOR RESIDUE CA A 1 A CA 1 Software 6 BINDING SITE FOR RESIDUE CA A 224 A CA 224 Software 5 BINDING SITE FOR RESIDUE CA A 225 A CA 225 Software 4 BINDING SITE FOR RESIDUE CA A 226 A CA 226 Software 3 BINDING SITE FOR RESIDUE CA C 13 C CA 13 Software 7 A ASP 18 A ASP 17 6 1_555 A GLU 19 A GLU 18 6 1_555 A HOH 229 I HOH 6 1_555 A HOH 230 I HOH 6 1_555 D C 6 C C 6 6 1_555 D DT 7 C DT 7 6 1_555 A ASP 18 A ASP 17 5 1_555 A GLU 19 A GLU 18 5 1_555 A ASP 107 A ASP 106 5 1_555 D DC 5 C DC 5 5 1_555 D C 6 C C 6 5 1_555 A ASP 124 A ASP 123 4 1_555 A HOH 266 I HOH 4 1_555 D C 6 C C 6 4 1_555 D HOH 182 K HOH 4 1_555 A ASN 91 A ASN 90 3 2_556 A ASN 216 A ASN 215 3 1_555 A HOH 299 I HOH 3 2_556 A HOH 233 I HOH 7 1_555 A HOH 235 I HOH 7 1_555 A HOH 239 I HOH 7 1_555 A HOH 312 I HOH 7 1_555 C HOH 234 J HOH 7 1_555 D HOH 129 K HOH 7 1_555 D HOH 236 K HOH 7 1_555 5 C 1 2 1