0.025445 0.001218 0.006936 0.000000 0.017679 0.001160 0.000000 0.000000 0.018000 0.00000 0.00000 0.00000 Doores, K.J. Fulton, Z. Huber, M. Wilson, I.A. Burton, D.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 92.91 105.05 92.74 39.301 56.628 57.653 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Virol. JOVIAM 0825 0022-538X 84 10690 10699 10.1128/JVI.01110-10 20702629 Antibody 2G12 recognizes di-mannose equivalently in domain- and nondomain-exchanged forms but only binds the HIV-1 glycan shield if domain exchanged. 2010 1 SINGLE WAVELENGTH M x-ray 1 1.0 BL9-2 SSRL SYNCHROTRON SSRL BEAMLINE BL9-2 23976.906 Fab 2G12, heavy chain Fab I19R 1 man polymer 23130.762 Fab 2G12, light chain 1 man polymer 342.297 alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose 1 man branched 96.063 SULFATE ION 2 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer 18.015 water 195 nat water 2alpha-alpha-mannobiose no no EVQLVESGGGLVKAGGSLRLSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVY LQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS EVQLVESGGGLVKAGGSLRLSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVY LQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS H polypeptide(L) no no VVMTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFD DFATYHCQHYAGYSATFGQGTRVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE VVMTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFD DFATYHCQHYAGYSATFGQGTRVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE L polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 9606 Homo sapiens sample 9606 Homo sapiens 1 2.62 53.08 atom_site chem_comp entity entity_name_com pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule_features pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Atomic model Data collection Derived calculations Structure summary 1 0 2011-01-12 1 1 2011-07-13 2 0 2020-07-29 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.src_method _entity.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id H MAN 228 n A MAN 1 H MAN 229 n A MAN 2 DManpa a-D-mannopyranose a-D-Manp Man RCSB Y RCSB 2010-08-05 REL REL oligosaccharide DManpa1-2DManpa1-ROH 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a1122h-1a_1-5]/1-1/a2-b1 3 PDB2Glycan 1.1.0 WURCS [][a-D-Manp]{[(2+1)][a-D-Manp]{}} 3 PDB-CARE LINUCS C1 O2 MAN MAN 2 1 3 O1 HO2 sing n n SO4 SULFATE ION GOL GLYCEROL HOH water Metabolism oligosaccharide 2alpha-alpha-mannobiose Oligosaccharide SO4 226 4 SO4 SO4 226 H SO4 227 4 SO4 SO4 227 H GOL 1 5 GOL GOL 1 L HOH 230 6 HOH HOH 230 H HOH 231 6 HOH HOH 231 H HOH 233 6 HOH HOH 233 H HOH 234 6 HOH HOH 234 H HOH 235 6 HOH HOH 235 H HOH 236 6 HOH HOH 236 H HOH 237 6 HOH HOH 237 H HOH 238 6 HOH HOH 238 H HOH 239 6 HOH HOH 239 H HOH 240 6 HOH HOH 240 H HOH 241 6 HOH HOH 241 H HOH 242 6 HOH HOH 242 H HOH 243 6 HOH HOH 243 H HOH 244 6 HOH HOH 244 H HOH 246 6 HOH HOH 246 H HOH 247 6 HOH HOH 247 H HOH 248 6 HOH HOH 248 H HOH 249 6 HOH HOH 249 H HOH 250 6 HOH HOH 250 H HOH 251 6 HOH HOH 251 H HOH 252 6 HOH HOH 252 H HOH 253 6 HOH HOH 253 H HOH 254 6 HOH HOH 254 H HOH 255 6 HOH HOH 255 H HOH 256 6 HOH HOH 256 H HOH 257 6 HOH HOH 257 H HOH 258 6 HOH HOH 258 H HOH 259 6 HOH HOH 259 H HOH 260 6 HOH HOH 260 H HOH 261 6 HOH HOH 261 H HOH 262 6 HOH HOH 262 H HOH 263 6 HOH HOH 263 H HOH 264 6 HOH HOH 264 H HOH 265 6 HOH HOH 265 H HOH 266 6 HOH HOH 266 H HOH 267 6 HOH HOH 267 H HOH 268 6 HOH HOH 268 H HOH 269 6 HOH HOH 269 H HOH 270 6 HOH HOH 270 H HOH 271 6 HOH HOH 271 H HOH 272 6 HOH HOH 272 H HOH 273 6 HOH HOH 273 H HOH 274 6 HOH HOH 274 H HOH 275 6 HOH HOH 275 H HOH 276 6 HOH HOH 276 H HOH 277 6 HOH HOH 277 H HOH 278 6 HOH HOH 278 H HOH 279 6 HOH HOH 279 H HOH 280 6 HOH HOH 280 H HOH 281 6 HOH HOH 281 H HOH 282 6 HOH HOH 282 H HOH 283 6 HOH HOH 283 H HOH 284 6 HOH HOH 284 H HOH 285 6 HOH HOH 285 H HOH 286 6 HOH HOH 286 H HOH 287 6 HOH HOH 287 H HOH 288 6 HOH HOH 288 H HOH 289 6 HOH HOH 289 H HOH 290 6 HOH HOH 290 H HOH 291 6 HOH HOH 291 H HOH 292 6 HOH HOH 292 H HOH 293 6 HOH HOH 293 H HOH 294 6 HOH HOH 294 H HOH 295 6 HOH HOH 295 H HOH 296 6 HOH HOH 296 H HOH 297 6 HOH HOH 297 H HOH 298 6 HOH HOH 298 H HOH 299 6 HOH HOH 299 H HOH 300 6 HOH HOH 300 H HOH 301 6 HOH HOH 301 H HOH 302 6 HOH HOH 302 H HOH 303 6 HOH HOH 303 H HOH 304 6 HOH HOH 304 H HOH 305 6 HOH HOH 305 H HOH 306 6 HOH HOH 306 H HOH 322 6 HOH HOH 322 H HOH 214 6 HOH HOH 214 L HOH 215 6 HOH HOH 215 L HOH 216 6 HOH HOH 216 L HOH 217 6 HOH HOH 217 L HOH 218 6 HOH HOH 218 L HOH 219 6 HOH HOH 219 L HOH 220 6 HOH HOH 220 L HOH 221 6 HOH HOH 221 L HOH 222 6 HOH HOH 222 L HOH 224 6 HOH HOH 224 L HOH 225 6 HOH HOH 225 L HOH 226 6 HOH HOH 226 L HOH 227 6 HOH HOH 227 L HOH 228 6 HOH HOH 228 L HOH 230 6 HOH HOH 230 L HOH 231 6 HOH HOH 231 L HOH 232 6 HOH HOH 232 L HOH 233 6 HOH HOH 233 L HOH 234 6 HOH HOH 234 L HOH 235 6 HOH HOH 235 L HOH 236 6 HOH HOH 236 L HOH 237 6 HOH HOH 237 L HOH 238 6 HOH HOH 238 L HOH 239 6 HOH HOH 239 L HOH 240 6 HOH HOH 240 L HOH 241 6 HOH HOH 241 L HOH 242 6 HOH HOH 242 L HOH 243 6 HOH HOH 243 L HOH 244 6 HOH HOH 244 L HOH 245 6 HOH HOH 245 L HOH 246 6 HOH HOH 246 L HOH 247 6 HOH HOH 247 L HOH 248 6 HOH HOH 248 L HOH 249 6 HOH HOH 249 L HOH 250 6 HOH HOH 250 L HOH 251 6 HOH HOH 251 L HOH 252 6 HOH HOH 252 L HOH 253 6 HOH HOH 253 L HOH 254 6 HOH HOH 254 L HOH 255 6 HOH HOH 255 L HOH 256 6 HOH HOH 256 L HOH 257 6 HOH HOH 257 L HOH 258 6 HOH HOH 258 L HOH 259 6 HOH HOH 259 L HOH 260 6 HOH HOH 260 L HOH 261 6 HOH HOH 261 L HOH 262 6 HOH HOH 262 L HOH 263 6 HOH HOH 263 L HOH 264 6 HOH HOH 264 L HOH 265 6 HOH HOH 265 L HOH 266 6 HOH HOH 266 L HOH 267 6 HOH HOH 267 L HOH 268 6 HOH HOH 268 L HOH 269 6 HOH HOH 269 L HOH 270 6 HOH HOH 270 L HOH 271 6 HOH HOH 271 L HOH 272 6 HOH HOH 272 L HOH 273 6 HOH HOH 273 L HOH 274 6 HOH HOH 274 L HOH 275 6 HOH HOH 275 L HOH 276 6 HOH HOH 276 L HOH 277 6 HOH HOH 277 L HOH 278 6 HOH HOH 278 L HOH 279 6 HOH HOH 279 L HOH 280 6 HOH HOH 280 L HOH 281 6 HOH HOH 281 L HOH 282 6 HOH HOH 282 L HOH 283 6 HOH HOH 283 L HOH 284 6 HOH HOH 284 L HOH 285 6 HOH HOH 285 L HOH 286 6 HOH HOH 286 L HOH 287 6 HOH HOH 287 L HOH 288 6 HOH HOH 288 L HOH 289 6 HOH HOH 289 L HOH 290 6 HOH HOH 290 L HOH 291 6 HOH HOH 291 L HOH 292 6 HOH HOH 292 L HOH 293 6 HOH HOH 293 L HOH 294 6 HOH HOH 294 L HOH 295 6 HOH HOH 295 L HOH 296 6 HOH HOH 296 L HOH 297 6 HOH HOH 297 L HOH 298 6 HOH HOH 298 L HOH 299 6 HOH HOH 299 L HOH 300 6 HOH HOH 300 L HOH 301 6 HOH HOH 301 L HOH 302 6 HOH HOH 302 L HOH 303 6 HOH HOH 303 L HOH 304 6 HOH HOH 304 L HOH 305 6 HOH HOH 305 L HOH 306 6 HOH HOH 306 L HOH 307 6 HOH HOH 307 L HOH 308 6 HOH HOH 308 L HOH 309 6 HOH HOH 309 L HOH 310 6 HOH HOH 310 L HOH 311 6 HOH HOH 311 L HOH 312 6 HOH HOH 312 L HOH 313 6 HOH HOH 313 L HOH 314 6 HOH HOH 314 L HOH 315 6 HOH HOH 315 L HOH 316 6 HOH HOH 316 L HOH 317 6 HOH HOH 317 L HOH 318 6 HOH HOH 318 L HOH 319 6 HOH HOH 319 L HOH 320 6 HOH HOH 320 L HOH 321 6 HOH HOH 321 L HOH 322 6 HOH HOH 322 L HOH 323 6 HOH HOH 323 L HOH 324 6 HOH HOH 324 L HOH 325 6 HOH HOH 325 L HOH 326 6 HOH HOH 326 L HOH 327 6 HOH HOH 327 L HOH 328 6 HOH HOH 328 L HOH 329 6 HOH HOH 329 L HOH 330 6 HOH HOH 330 L HOH 331 6 HOH HOH 331 L HOH 332 6 HOH HOH 332 L HOH 333 6 HOH HOH 333 L HOH 334 6 HOH HOH 334 L GLU 1 n 1 GLU 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H VAL 5 n 5 VAL 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H GLY 9 n 9 GLY 9 H GLY 10 n 10 GLY 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H LYS 13 n 13 LYS 13 H ALA 14 n 14 ALA 14 H GLY 15 n 15 GLY 15 H GLY 16 n 16 GLY 16 H SER 17 n 17 SER 17 H LEU 18 n 18 LEU 18 H ARG 19 n 19 ARG 19 H LEU 20 n 20 LEU 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H GLY 23 n 23 GLY 23 H VAL 24 n 24 VAL 24 H SER 25 n 25 SER 25 H ASN 26 n 26 ASN 26 H PHE 27 n 27 PHE 27 H ARG 28 n 28 ARG 28 H ILE 29 n 29 ILE 29 H SER 30 n 30 SER 30 H ALA 31 n 31 ALA 31 H HIS 32 n 32 HIS 32 H THR 33 n 33 THR 33 H MET 34 n 34 MET 34 H ASN 35 n 35 ASN 35 H TRP 36 n 36 TRP 36 H VAL 37 n 37 VAL 37 H ARG 38 n 38 ARG 38 H ARG 39 n 39 ARG 39 H VAL 40 n 40 VAL 40 H PRO 41 n 41 PRO 41 H GLY 42 n 42 GLY 42 H GLY 43 n 43 GLY 43 H GLY 44 n 44 GLY 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H VAL 48 n 48 VAL 48 H ALA 49 n 49 ALA 49 H SER 50 n 50 SER 50 H ILE 51 n 51 ILE 51 H SER 52 n 52 SER 52 H THR 53 n 53 THR 53 H SER 54 n 54 SER 54 H SER 55 n 55 SER 55 H THR 56 n 56 THR 56 H TYR 57 n 57 TYR 57 H ARG 58 n 58 ARG 58 H ASP 59 n 59 ASP 59 H TYR 60 n 60 TYR 60 H ALA 61 n 61 ALA 61 H ASP 62 n 62 ASP 62 H ALA 63 n 63 ALA 63 H VAL 64 n 64 VAL 64 H LYS 65 n 65 LYS 65 H GLY 66 n 66 GLY 66 H ARG 67 n 67 ARG 67 H PHE 68 n 68 PHE 68 H THR 69 n 69 THR 69 H VAL 70 n 70 VAL 70 H SER 71 n 71 SER 71 H ARG 72 n 72 ARG 72 H ASP 73 n 73 ASP 73 H ASP 74 n 74 ASP 74 H LEU 75 n 75 LEU 75 H GLU 76 n 76 GLU 76 H ASP 77 n 77 ASP 77 H PHE 78 n 78 PHE 78 H VAL 79 n 79 VAL 79 H TYR 80 n 80 TYR 80 H LEU 81 n 81 LEU 81 H GLN 82 n 82 GLN 82 H MET 83 n 83 MET 83 H HIS 84 n 84 HIS 84 H LYS 85 n 85 LYS 85 H MET 86 n 86 MET 86 H ARG 87 n 87 ARG 87 H VAL 88 n 88 VAL 88 H GLU 89 n 89 GLU 89 H ASP 90 n 90 ASP 90 H THR 91 n 91 THR 91 H ALA 92 n 92 ALA 92 H ILE 93 n 93 ILE 93 H TYR 94 n 94 TYR 94 H TYR 95 n 95 TYR 95 H CYS 96 n 96 CYS 96 H ALA 97 n 97 ALA 97 H ARG 98 n 98 ARG 98 H LYS 99 n 99 LYS 99 H GLY 100 n 100 GLY 100 H SER 101 n 101 SER 101 H ASP 102 n 102 ASP 102 H ARG 103 n 103 ARG 103 H LEU 104 n 104 LEU 104 H SER 105 n 105 SER 105 H ASP 106 n 106 ASP 106 H ASN 107 n 107 ASN 107 H ASP 108 n 108 ASP 108 H PRO 109 n 109 PRO 109 H PHE 110 n 110 PHE 110 H ASP 111 n 111 ASP 111 H ALA 112 n 112 ALA 112 H TRP 113 n 113 TRP 113 H GLY 114 n 114 GLY 114 H PRO 115 n 115 PRO 115 H GLY 116 n 116 GLY 116 H THR 117 n 117 THR 117 H VAL 118 n 118 VAL 118 H VAL 119 n 119 VAL 119 H THR 120 n 120 THR 120 H VAL 121 n 121 VAL 121 H SER 122 n 122 SER 122 H PRO 123 n 123 PRO 123 H ALA 124 n 124 ALA 124 H SER 125 n 125 SER 125 H THR 126 n 126 THR 126 H LYS 127 n 127 LYS 127 H GLY 128 n 128 GLY 128 H PRO 129 n 129 PRO 129 H SER 130 n 130 SER 130 H VAL 131 n 131 VAL 131 H PHE 132 n 132 PHE 132 H PRO 133 n 133 PRO 133 H LEU 134 n 134 LEU 134 H ALA 135 n 135 ALA 135 H PRO 136 n 136 PRO 136 H SER 137 n 137 SER 137 H n 138 138 H n 139 139 H n 140 140 H n 141 141 H n 142 142 H n 143 143 H GLY 144 n 144 GLY 144 H THR 145 n 145 THR 145 H ALA 146 n 146 ALA 146 H ALA 147 n 147 ALA 147 H LEU 148 n 148 LEU 148 H GLY 149 n 149 GLY 149 H CYS 150 n 150 CYS 150 H LEU 151 n 151 LEU 151 H VAL 152 n 152 VAL 152 H LYS 153 n 153 LYS 153 H ASP 154 n 154 ASP 154 H TYR 155 n 155 TYR 155 H PHE 156 n 156 PHE 156 H PRO 157 n 157 PRO 157 H GLU 158 n 158 GLU 158 H PRO 159 n 159 PRO 159 H VAL 160 n 160 VAL 160 H THR 161 n 161 THR 161 H VAL 162 n 162 VAL 162 H SER 163 n 163 SER 163 H TRP 164 n 164 TRP 164 H ASN 165 n 165 ASN 165 H SER 166 n 166 SER 166 H GLY 167 n 167 GLY 167 H ALA 168 n 168 ALA 168 H LEU 169 n 169 LEU 169 H THR 170 n 170 THR 170 H SER 171 n 171 SER 171 H GLY 172 n 172 GLY 172 H VAL 173 n 173 VAL 173 H HIS 174 n 174 HIS 174 H THR 175 n 175 THR 175 H PHE 176 n 176 PHE 176 H PRO 177 n 177 PRO 177 H ALA 178 n 178 ALA 178 H VAL 179 n 179 VAL 179 H LEU 180 n 180 LEU 180 H GLN 181 n 181 GLN 181 H SER 182 n 182 SER 182 H SER 183 n 183 SER 183 H GLY 184 n 184 GLY 184 H LEU 185 n 185 LEU 185 H TYR 186 n 186 TYR 186 H SER 187 n 187 SER 187 H LEU 188 n 188 LEU 188 H SER 189 n 189 SER 189 H SER 190 n 190 SER 190 H VAL 191 n 191 VAL 191 H VAL 192 n 192 VAL 192 H THR 193 n 193 THR 193 H VAL 194 n 194 VAL 194 H PRO 195 n 195 PRO 195 H SER 196 n 196 SER 196 H SER 197 n 197 SER 197 H SER 198 n 198 SER 198 H LEU 199 n 199 LEU 199 H GLY 200 n 200 GLY 200 H THR 201 n 201 THR 201 H GLN 202 n 202 GLN 202 H THR 203 n 203 THR 203 H TYR 204 n 204 TYR 204 H ILE 205 n 205 ILE 205 H CYS 206 n 206 CYS 206 H ASN 207 n 207 ASN 207 H VAL 208 n 208 VAL 208 H ASN 209 n 209 ASN 209 H HIS 210 n 210 HIS 210 H LYS 211 n 211 LYS 211 H PRO 212 n 212 PRO 212 H SER 213 n 213 SER 213 H ASN 214 n 214 ASN 214 H THR 215 n 215 THR 215 H LYS 216 n 216 LYS 216 H VAL 217 n 217 VAL 217 H ASP 218 n 218 ASP 218 H LYS 219 n 219 LYS 219 H LYS 220 n 220 LYS 220 H VAL 221 n 221 VAL 221 H GLU 222 n 222 GLU 222 H PRO 223 n 223 PRO 223 H LYS 224 n 224 LYS 224 H n 225 225 H VAL 2 n 1 VAL 2 L VAL 3 n 2 VAL 3 L MET 4 n 3 MET 4 L THR 5 n 4 THR 5 L GLN 6 n 5 GLN 6 L SER 7 n 6 SER 7 L PRO 8 n 7 PRO 8 L SER 9 n 8 SER 9 L THR 10 n 9 THR 10 L LEU 11 n 10 LEU 11 L SER 12 n 11 SER 12 L ALA 13 n 12 ALA 13 L SER 14 n 13 SER 14 L VAL 15 n 14 VAL 15 L GLY 16 n 15 GLY 16 L ASP 17 n 16 ASP 17 L THR 18 n 17 THR 18 L ILE 19 n 18 ILE 19 L THR 20 n 19 THR 20 L ILE 21 n 20 ILE 21 L THR 22 n 21 THR 22 L CYS 23 n 22 CYS 23 L ARG 24 n 23 ARG 24 L ALA 25 n 24 ALA 25 L SER 26 n 25 SER 26 L GLN 27 n 26 GLN 27 L SER 28 n 27 SER 28 L ILE 29 n 28 ILE 29 L GLU 30 n 29 GLU 30 L THR 31 n 30 THR 31 L TRP 32 n 31 TRP 32 L LEU 33 n 32 LEU 33 L ALA 34 n 33 ALA 34 L TRP 35 n 34 TRP 35 L TYR 36 n 35 TYR 36 L GLN 37 n 36 GLN 37 L GLN 38 n 37 GLN 38 L LYS 39 n 38 LYS 39 L PRO 40 n 39 PRO 40 L GLY 41 n 40 GLY 41 L LYS 42 n 41 LYS 42 L ALA 43 n 42 ALA 43 L PRO 44 n 43 PRO 44 L LYS 45 n 44 LYS 45 L LEU 46 n 45 LEU 46 L LEU 47 n 46 LEU 47 L ILE 48 n 47 ILE 48 L TYR 49 n 48 TYR 49 L LYS 50 n 49 LYS 50 L ALA 51 n 50 ALA 51 L SER 52 n 51 SER 52 L THR 53 n 52 THR 53 L LEU 54 n 53 LEU 54 L LYS 55 n 54 LYS 55 L THR 56 n 55 THR 56 L GLY 57 n 56 GLY 57 L VAL 58 n 57 VAL 58 L PRO 59 n 58 PRO 59 L SER 60 n 59 SER 60 L ARG 61 n 60 ARG 61 L PHE 62 n 61 PHE 62 L SER 63 n 62 SER 63 L GLY 64 n 63 GLY 64 L SER 65 n 64 SER 65 L GLY 66 n 65 GLY 66 L SER 67 n 66 SER 67 L GLY 68 n 67 GLY 68 L THR 69 n 68 THR 69 L GLU 70 n 69 GLU 70 L PHE 71 n 70 PHE 71 L THR 72 n 71 THR 72 L LEU 73 n 72 LEU 73 L THR 74 n 73 THR 74 L ILE 75 n 74 ILE 75 L SER 76 n 75 SER 76 L GLY 77 n 76 GLY 77 L LEU 78 n 77 LEU 78 L GLN 79 n 78 GLN 79 L PHE 80 n 79 PHE 80 L ASP 81 n 80 ASP 81 L ASP 82 n 81 ASP 82 L PHE 83 n 82 PHE 83 L ALA 84 n 83 ALA 84 L THR 85 n 84 THR 85 L TYR 86 n 85 TYR 86 L HIS 87 n 86 HIS 87 L CYS 88 n 87 CYS 88 L GLN 89 n 88 GLN 89 L HIS 90 n 89 HIS 90 L TYR 91 n 90 TYR 91 L ALA 92 n 91 ALA 92 L GLY 93 n 92 GLY 93 L TYR 94 n 93 TYR 94 L SER 95 n 94 SER 95 L ALA 96 n 95 ALA 96 L THR 97 n 96 THR 97 L PHE 98 n 97 PHE 98 L GLY 99 n 98 GLY 99 L GLN 100 n 99 GLN 100 L GLY 101 n 100 GLY 101 L THR 102 n 101 THR 102 L ARG 103 n 102 ARG 103 L VAL 104 n 103 VAL 104 L GLU 105 n 104 GLU 105 L ILE 106 n 105 ILE 106 L LYS 107 n 106 LYS 107 L ARG 108 n 107 ARG 108 L THR 109 n 108 THR 109 L VAL 110 n 109 VAL 110 L ALA 111 n 110 ALA 111 L ALA 112 n 111 ALA 112 L PRO 113 n 112 PRO 113 L SER 114 n 113 SER 114 L VAL 115 n 114 VAL 115 L PHE 116 n 115 PHE 116 L ILE 117 n 116 ILE 117 L PHE 118 n 117 PHE 118 L PRO 119 n 118 PRO 119 L PRO 120 n 119 PRO 120 L SER 121 n 120 SER 121 L ASP 122 n 121 ASP 122 L GLU 123 n 122 GLU 123 L GLN 124 n 123 GLN 124 L LEU 125 n 124 LEU 125 L LYS 126 n 125 LYS 126 L SER 127 n 126 SER 127 L GLY 128 n 127 GLY 128 L THR 129 n 128 THR 129 L ALA 130 n 129 ALA 130 L SER 131 n 130 SER 131 L VAL 132 n 131 VAL 132 L VAL 133 n 132 VAL 133 L CYS 134 n 133 CYS 134 L LEU 135 n 134 LEU 135 L LEU 136 n 135 LEU 136 L ASN 137 n 136 ASN 137 L ASN 138 n 137 ASN 138 L PHE 139 n 138 PHE 139 L TYR 140 n 139 TYR 140 L PRO 141 n 140 PRO 141 L ARG 142 n 141 ARG 142 L GLU 143 n 142 GLU 143 L ALA 144 n 143 ALA 144 L LYS 145 n 144 LYS 145 L VAL 146 n 145 VAL 146 L GLN 147 n 146 GLN 147 L TRP 148 n 147 TRP 148 L LYS 149 n 148 LYS 149 L VAL 150 n 149 VAL 150 L ASP 151 n 150 ASP 151 L ASN 152 n 151 ASN 152 L ALA 153 n 152 ALA 153 L LEU 154 n 153 LEU 154 L GLN 155 n 154 GLN 155 L SER 156 n 155 SER 156 L GLY 157 n 156 GLY 157 L ASN 158 n 157 ASN 158 L SER 159 n 158 SER 159 L GLN 160 n 159 GLN 160 L GLU 161 n 160 GLU 161 L SER 162 n 161 SER 162 L VAL 163 n 162 VAL 163 L THR 164 n 163 THR 164 L GLU 165 n 164 GLU 165 L GLN 166 n 165 GLN 166 L ASP 167 n 166 ASP 167 L SER 168 n 167 SER 168 L LYS 169 n 168 LYS 169 L ASP 170 n 169 ASP 170 L SER 171 n 170 SER 171 L THR 172 n 171 THR 172 L TYR 173 n 172 TYR 173 L SER 174 n 173 SER 174 L LEU 175 n 174 LEU 175 L SER 176 n 175 SER 176 L SER 177 n 176 SER 177 L THR 178 n 177 THR 178 L LEU 179 n 178 LEU 179 L THR 180 n 179 THR 180 L LEU 181 n 180 LEU 181 L SER 182 n 181 SER 182 L LYS 183 n 182 LYS 183 L ALA 184 n 183 ALA 184 L ASP 185 n 184 ASP 185 L TYR 186 n 185 TYR 186 L GLU 187 n 186 GLU 187 L LYS 188 n 187 LYS 188 L HIS 189 n 188 HIS 189 L LYS 190 n 189 LYS 190 L VAL 191 n 190 VAL 191 L TYR 192 n 191 TYR 192 L ALA 193 n 192 ALA 193 L CYS 194 n 193 CYS 194 L GLU 195 n 194 GLU 195 L VAL 196 n 195 VAL 196 L THR 197 n 196 THR 197 L HIS 198 n 197 HIS 198 L GLN 199 n 198 GLN 199 L GLY 200 n 199 GLY 200 L LEU 201 n 200 LEU 201 L SER 202 n 201 SER 202 L SER 203 n 202 SER 203 L PRO 204 n 203 PRO 204 L VAL 205 n 204 VAL 205 L THR 206 n 205 THR 206 L LYS 207 n 206 LYS 207 L SER 208 n 207 SER 208 L PHE 209 n 208 PHE 209 L ASN 210 n 209 ASN 210 L ARG 211 n 210 ARG 211 L GLY 212 n 211 GLY 212 L GLU 213 n 212 GLU 213 L 0.4747 -0.1614 0.1514 1.4791 -1.2263 1.9450 0.0167 -0.0144 0.0366 0.3190 0.0636 0.1095 -0.5294 -0.0503 -0.0803 0.1488 0.0096 0.0266 0.0775 -0.0433 0.0266 refined -12.5016 8.0051 -11.5220 X-RAY DIFFRACTION 0.3859 0.0850 0.1463 0.5566 -0.6098 3.5036 -0.0515 -0.0658 -0.0207 -0.0622 0.0716 0.0347 0.4648 -0.0899 -0.0201 -0.0114 -0.0524 0.0079 0.0025 -0.0333 -0.0150 refined -12.5094 -8.1433 -19.7634 X-RAY DIFFRACTION H 1 H 137 X-RAY DIFFRACTION 1 { H|1 - H|137 H|144 - H|224 } H 144 H 224 X-RAY DIFFRACTION 1 { H|1 - H|137 H|144 - H|224 } L 2 L 213 X-RAY DIFFRACTION 2 { L|2 - L|213 } author_and_software_defined_assembly PISA 2 dimeric 4340 -45 19690 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H N VAL 5 A N VAL 5 H O GLY 23 A O GLY 23 H N LEU 20 A N LEU 20 H O LEU 81 A O LEU 81 H O TYR 80 A O TYR 80 H N SER 71 A N SER 71 H N GLY 10 A N GLY 10 H O THR 120 A O THR 120 H O THR 117 A O THR 117 H N TYR 94 A N TYR 94 H O TYR 95 A O TYR 95 H N VAL 37 A N VAL 37 H N TRP 36 A N TRP 36 H O ALA 49 A O ALA 49 H N SER 50 A N SER 50 H O ASP 59 A O ASP 59 H N GLY 10 A N GLY 10 H O THR 120 A O THR 120 H O THR 117 A O THR 117 H N TYR 94 A N TYR 94 H N ARG 98 A N ARG 98 H O ALA 112 A O ALA 112 H N PHE 132 A N PHE 132 H O LEU 151 A O LEU 151 H N VAL 152 A N VAL 152 H O LEU 188 A O LEU 188 H O VAL 191 A O VAL 191 H N HIS 174 A N HIS 174 H N PHE 132 A N PHE 132 H O LEU 151 A O LEU 151 H N VAL 152 A N VAL 152 H O LEU 188 A O LEU 188 H O SER 187 A O SER 187 H N VAL 179 A N VAL 179 H N SER 163 A N SER 163 H O ASN 207 A O ASN 207 H N VAL 208 A N VAL 208 H O VAL 217 A O VAL 217 L N THR 5 B N THR 4 L O ARG 24 B O ARG 23 L N ILE 21 B N ILE 20 L O LEU 73 B O LEU 72 L O THR 74 B O THR 73 L N SER 63 B N SER 62 L N LEU 11 B N LEU 10 L O GLU 105 B O GLU 104 L O THR 102 B O THR 101 L N TYR 86 B N TYR 85 L O THR 85 B O THR 84 L N GLN 38 B N GLN 37 L N TRP 35 B N TRP 34 L O LEU 47 B O LEU 46 L N TYR 49 B N TYR 48 L O THR 53 B O THR 52 L N LEU 11 B N LEU 10 L O GLU 105 B O GLU 104 L O THR 102 B O THR 101 L N TYR 86 B N TYR 85 L N HIS 90 B N HIS 89 L O THR 97 B O THR 96 L N SER 114 B N SER 113 L O ASN 137 B O ASN 136 L N ALA 130 B N ALA 129 L O LEU 181 B O LEU 180 L O THR 178 B O THR 177 L N GLN 160 B N GLN 159 L O ALA 153 B O ALA 152 L N VAL 150 B N VAL 149 L N GLN 147 B N GLN 146 L O GLU 195 B O GLU 194 L N VAL 196 B N VAL 195 L O VAL 205 B O VAL 204 1 H OG SER 137 A OG SER 137 1 Y 1 L CG GLU 213 B CG GLU 212 1 Y 1 L CD GLU 213 B CD GLU 212 1 Y 1 L OE1 GLU 213 B OE1 GLU 212 1 Y 1 L OE2 GLU 213 B OE2 GLU 212 1 Y 1 H SER 138 A SER 138 1 Y 1 H LYS 139 A LYS 139 1 Y 1 H SER 140 A SER 140 1 Y 1 H THR 141 A THR 141 1 Y 1 H SER 142 A SER 142 1 Y 1 H GLY 143 A GLY 143 1 Y 1 H SER 225 A SER 225 1 Y 1 H ALA 14 -59.62 108.78 1 H PRO 41 -65.47 82.08 1 L GLU 30 54.58 -118.96 1 L ALA 51 66.08 -38.93 1 L ALA 84 -174.70 -177.22 1 L ASN 138 43.96 71.97 132.760 46.4094 22.210 2.3161 -8.0545 0.6111 -8.2006 1.7949 5.8844 0.9070 0.8837 0.2428 0.2117 0.2134 1.9000 19.7500 1633 32317 5.0500 1.000 0.500 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.286 1.9000 19.7500 195 3496 39 0 3262 1123 2.000 65 2.000 501 5.000 3376 20.000 460 5.000 3721 4.000 0.009 3400 2.000 1.120 4636 2.000 3.360 16.860 0.2451 0.2050 0.2067 1.9600 85 1787 1872 16 4.5400 31.640 1.9 19.75 3OAU 32889 1 refinement Gerard Bricogne buster-develop@GlobalPhasing.com http://www.globalphasing.com/buster/ BUSTER-TNT program BUSTER 2.8.0 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 refinement BUSTER 2.8.0 Fab 2G12, heavy chain, Fab 2G12, light chain Antibody 2G12 Recognizes Di-Mannose Equivalently in Domain- and Non-Domain-Exchanged Forms, but only binds the HIV-1 Glycan Shield if Domain-Exchanged 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 6 N N 6 N N H THR 53 A THR 53 HELX_P H THR 56 A THR 56 5 1 4 H ARG 87 A ARG 87 HELX_P H THR 91 A THR 91 5 2 5 H SER 166 A SER 166 HELX_P H ALA 168 A ALA 168 5 3 3 H SER 197 A SER 197 HELX_P H LEU 199 A LEU 199 5 4 3 H LYS 211 A LYS 211 HELX_P H ASN 214 A ASN 214 5 5 4 L GLN 79 B GLN 78 HELX_P L PHE 83 B PHE 82 5 6 5 L SER 121 B SER 120 HELX_P L LYS 126 B LYS 125 1 7 6 L LYS 183 B LYS 182 HELX_P L HIS 189 B HIS 188 1 8 7 disulf 2.042 H CYS 22 A SG CYS 22 1_555 H CYS 96 A SG CYS 96 1_555 disulf 2.031 H CYS 150 A SG CYS 150 1_555 H CYS 206 A SG CYS 206 1_555 disulf 2.076 L CYS 23 B SG CYS 22 1_555 L CYS 88 B SG CYS 87 1_555 disulf 2.046 L CYS 134 B SG CYS 133 1_555 L CYS 194 B SG CYS 193 1_555 covale 1.434 both A MAN 1 C O2 MAN 1_555 A MAN 2 C C1 MAN 1_555 IMMUNE SYSTEM Fab, IMMUNE SYSTEM H GLY 42 A GLY 42 1 H GLY 43 A GLY 43 0.70 H PHE 156 A PHE 156 1 H PRO 157 A PRO 157 -2.22 H GLU 158 A GLU 158 1 H PRO 159 A PRO 159 2.34 L SER 7 B SER 6 1 L PRO 8 B PRO 7 -1.30 L TYR 140 B TYR 139 1 L PRO 141 B PRO 140 2.38 3OAU PDB 1 3OAU 3OAU PDB 2 3OAU 1 225 3OAU 1 225 3OAU H 1 1 225 2 213 3OAU 2 213 3OAU L 2 1 212 4 6 4 4 4 3 4 6 4 4 4 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H GLN 3 A GLN 3 H SER 7 A SER 7 H LEU 18 A LEU 18 H SER 25 A SER 25 H PHE 78 A PHE 78 H MET 83 A MET 83 H PHE 68 A PHE 68 H ASP 73 A ASP 73 H GLY 10 A GLY 10 H VAL 12 A VAL 12 H THR 117 A THR 117 H VAL 121 A VAL 121 H ALA 92 A ALA 92 H LYS 99 A LYS 99 H MET 34 A MET 34 H ARG 39 A ARG 39 H LEU 45 A LEU 45 H ILE 51 A ILE 51 H ARG 58 A ARG 58 H TYR 60 A TYR 60 H GLY 10 A GLY 10 H VAL 12 A VAL 12 H THR 117 A THR 117 H VAL 121 A VAL 121 H ALA 92 A ALA 92 H LYS 99 A LYS 99 H PHE 110 A PHE 110 H TRP 113 A TRP 113 H SER 130 A SER 130 H LEU 134 A LEU 134 H THR 145 A THR 145 H TYR 155 A TYR 155 H TYR 186 A TYR 186 H PRO 195 A PRO 195 H VAL 173 A VAL 173 H THR 175 A THR 175 H SER 130 A SER 130 H LEU 134 A LEU 134 H THR 145 A THR 145 H TYR 155 A TYR 155 H TYR 186 A TYR 186 H PRO 195 A PRO 195 H VAL 179 A VAL 179 H LEU 180 A LEU 180 H THR 161 A THR 161 H TRP 164 A TRP 164 H ILE 205 A ILE 205 H HIS 210 A HIS 210 H THR 215 A THR 215 H LYS 220 A LYS 220 L MET 4 B MET 3 L SER 7 B SER 6 L THR 18 B THR 17 L ALA 25 B ALA 24 L GLU 70 B GLU 69 L SER 76 B SER 75 L PHE 62 B PHE 61 L SER 67 B SER 66 L THR 10 B THR 9 L ALA 13 B ALA 12 L THR 102 B THR 101 L ILE 106 B ILE 105 L THR 85 B THR 84 L TYR 91 B TYR 90 L LEU 33 B LEU 32 L GLN 38 B GLN 37 L LYS 45 B LYS 44 L TYR 49 B TYR 48 L THR 53 B THR 52 L LEU 54 B LEU 53 L THR 10 B THR 9 L ALA 13 B ALA 12 L THR 102 B THR 101 L ILE 106 B ILE 105 L THR 85 B THR 84 L TYR 91 B TYR 90 L ALA 96 B ALA 95 L PHE 98 B PHE 97 L SER 114 B SER 113 L PHE 118 B PHE 117 L THR 129 B THR 128 L PHE 139 B PHE 138 L TYR 173 B TYR 172 L SER 182 B SER 181 L SER 159 B SER 158 L VAL 163 B VAL 162 L ALA 153 B ALA 152 L LEU 154 B LEU 153 L LYS 145 B LYS 144 L VAL 150 B VAL 149 L VAL 191 B VAL 190 L THR 197 B THR 196 L VAL 205 B VAL 204 L ASN 210 B ASN 209 1 P 1