0.022351
0.000000
0.000000
0.000000
0.007625
0.000000
0.000000
0.000000
0.005899
0.00000
0.00000
0.00000
Doores, K.J.
Fulton, Z.
Hong, V.
Patel, M.K.
Scanlan, C.N.
Wormald, M.R.
Finn, M.G.
Burton, D.R.
Wilson, I.A.
Davis, B.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
44.740
131.155
169.534
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C7 H14 O6
194.182
n
7-deoxy-L-glycero-alpha-D-manno-heptopyranose
D-saccharide, alpha linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
S
C
N
231
S
C
N
232
S
C
N
233
S
C
N
234
R
C
N
235
N
C
N
236
N
O
N
237
N
O
N
238
N
O
N
239
N
O
N
240
N
O
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
S
N
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
O
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
R
C
N
333
N
O
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
N
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
N
401
N
C
N
402
N
C
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
O
N
416
S
C
N
417
S
C
N
418
S
C
N
419
S
C
N
420
R
C
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
O
N
425
N
O
N
426
N
O
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
Y
272
N
doub
Y
273
N
sing
Y
274
N
sing
N
275
N
sing
Y
276
N
doub
N
277
N
sing
Y
278
N
doub
N
279
N
sing
Y
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
Y
341
N
doub
Y
342
N
sing
Y
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
sing
Y
350
N
doub
N
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
107
17107
17112
10.1073/pnas.1002717107
20852065
A nonself sugar mimic of the HIV glycan shield shows enhanced antigenicity.
2010
10.2210/pdb3ob0/pdb
pdb_00003ob0
1
SINGLE WAVELENGTH
M
x-ray
1
1.0
8.2.1
ALS
SYNCHROTRON
ALS BEAMLINE 8.2.1
23201.840
Fab 2G12, light chain
Fab
2
man
polymer
23845.791
Fab 2G12, heavy chain
2
man
polymer
680.604
7-deoxy-L-glycero-alpha-D-manno-heptopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose
2
man
branched
18.015
water
8
nat
water
no
no
AVVMTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQF
DDFATYHCQHYAGYSATFGQGTRVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ
ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
AVVMTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQF
DDFATYHCQHYAGYSATFGQGTRVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ
ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
L,K
polypeptide(L)
no
no
EVQLVESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVY
LQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV
TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
EVQLVESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVY
LQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV
TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
H,M
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Chinese hamster
sample
9606
Homo sapiens
10029
ovary
Cricetulus griseus
Chinese hamster
sample
9606
Homo sapiens
10029
ovary
Cricetulus griseus
1
2.64
53.46
audit_author
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_validate_close_contact
struct_conn
struct_conn_type
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Structure summary
Advisory
Atomic model
Data collection
Derived calculations
Non-polymer description
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2011-01-12
1
1
2011-07-13
1
2
2018-01-24
2
0
2020-07-29
2
1
2023-09-06
_audit_author.name
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.type
_entity.pdbx_description
_entity.src_method
_entity.type
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
X
2M6
1
n
A
MAN
1
X
2M6
1
n
A
MAN
2
X
2M6
1
n
A
MAN
3
X
2M6
1
n
A
YYH
4
X
2M6
2
n
B
MAN
1
X
2M6
2
n
B
MAN
2
X
2M6
2
n
B
MAN
3
X
2M6
2
n
B
YYH
4
DManpa
a-D-mannopyranose
a-D-Manp
Man
RCSB
Y
RCSB
2010-08-06
REL
REL
oligosaccharide
WURCS=2.0/2,4,3/[a1122h-1a_1-5][a11221m-1a_1-5]/1-1-1-2/a3-b1_b2-c1_c2-d1
3
PDB2Glycan
1.1.0
WURCS
[][a-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][a-D-Manp]{[(2+1)][a-D-7-deoxy-Manp]{}}}}
3
PDB-CARE
LINUCS
C1
O3
MAN
MAN
2
1
3
O1
HO3
sing
C1
O2
MAN
MAN
3
2
3
O1
HO2
sing
C1
O2
YYH
MAN
4
3
3
O1
HO2
sing
n
n
n
n
HOH
water
1OP3
PDB entry 1OP3
PDB
experimental model
HOH
214
4
HOH
HOH
214
L
HOH
215
4
HOH
HOH
215
L
HOH
232
4
HOH
HOH
232
H
HOH
214
4
HOH
HOH
214
K
HOH
215
4
HOH
HOH
215
K
HOH
216
4
HOH
HOH
216
K
HOH
232
4
HOH
HOH
232
M
HOH
233
4
HOH
HOH
233
M
ALA
1
n
1
ALA
1
L
VAL
2
n
2
VAL
2
L
VAL
3
n
3
VAL
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
SER
9
n
9
SER
9
L
THR
10
n
10
THR
10
L
LEU
11
n
11
LEU
11
L
SER
12
n
12
SER
12
L
ALA
13
n
13
ALA
13
L
SER
14
n
14
SER
14
L
VAL
15
n
15
VAL
15
L
GLY
16
n
16
GLY
16
L
ASP
17
n
17
ASP
17
L
THR
18
n
18
THR
18
L
ILE
19
n
19
ILE
19
L
THR
20
n
20
THR
20
L
ILE
21
n
21
ILE
21
L
THR
22
n
22
THR
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
ALA
25
n
25
ALA
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
SER
28
n
28
SER
28
L
ILE
29
n
29
ILE
29
L
GLU
30
n
30
GLU
30
L
THR
31
n
31
THR
31
L
TRP
32
n
32
TRP
32
L
LEU
33
n
33
LEU
33
L
ALA
34
n
34
ALA
34
L
TRP
35
n
35
TRP
35
L
TYR
36
n
36
TYR
36
L
GLN
37
n
37
GLN
37
L
GLN
38
n
38
GLN
38
L
LYS
39
n
39
LYS
39
L
PRO
40
n
40
PRO
40
L
GLY
41
n
41
GLY
41
L
LYS
42
n
42
LYS
42
L
ALA
43
n
43
ALA
43
L
PRO
44
n
44
PRO
44
L
LYS
45
n
45
LYS
45
L
LEU
46
n
46
LEU
46
L
LEU
47
n
47
LEU
47
L
ILE
48
n
48
ILE
48
L
TYR
49
n
49
TYR
49
L
LYS
50
n
50
LYS
50
L
ALA
51
n
51
ALA
51
L
SER
52
n
52
SER
52
L
THR
53
n
53
THR
53
L
LEU
54
n
54
LEU
54
L
LYS
55
n
55
LYS
55
L
THR
56
n
56
THR
56
L
GLY
57
n
57
GLY
57
L
VAL
58
n
58
VAL
58
L
PRO
59
n
59
PRO
59
L
SER
60
n
60
SER
60
L
ARG
61
n
61
ARG
61
L
PHE
62
n
62
PHE
62
L
SER
63
n
63
SER
63
L
GLY
64
n
64
GLY
64
L
SER
65
n
65
SER
65
L
GLY
66
n
66
GLY
66
L
SER
67
n
67
SER
67
L
GLY
68
n
68
GLY
68
L
THR
69
n
69
THR
69
L
GLU
70
n
70
GLU
70
L
PHE
71
n
71
PHE
71
L
THR
72
n
72
THR
72
L
LEU
73
n
73
LEU
73
L
THR
74
n
74
THR
74
L
ILE
75
n
75
ILE
75
L
SER
76
n
76
SER
76
L
GLY
77
n
77
GLY
77
L
LEU
78
n
78
LEU
78
L
GLN
79
n
79
GLN
79
L
PHE
80
n
80
PHE
80
L
ASP
81
n
81
ASP
81
L
ASP
82
n
82
ASP
82
L
PHE
83
n
83
PHE
83
L
ALA
84
n
84
ALA
84
L
THR
85
n
85
THR
85
L
TYR
86
n
86
TYR
86
L
HIS
87
n
87
HIS
87
L
CYS
88
n
88
CYS
88
L
GLN
89
n
89
GLN
89
L
HIS
90
n
90
HIS
90
L
TYR
91
n
91
TYR
91
L
ALA
92
n
92
ALA
92
L
GLY
93
n
93
GLY
93
L
TYR
94
n
94
TYR
94
L
SER
95
n
95
SER
95
L
ALA
96
n
96
ALA
96
L
THR
97
n
97
THR
97
L
PHE
98
n
98
PHE
98
L
GLY
99
n
99
GLY
99
L
GLN
100
n
100
GLN
100
L
GLY
101
n
101
GLY
101
L
THR
102
n
102
THR
102
L
ARG
103
n
103
ARG
103
L
VAL
104
n
104
VAL
104
L
GLU
105
n
105
GLU
105
L
ILE
106
n
106
ILE
106
L
LYS
107
n
107
LYS
107
L
ARG
108
n
108
ARG
108
L
THR
109
n
109
THR
109
L
VAL
110
n
110
VAL
110
L
ALA
111
n
111
ALA
111
L
ALA
112
n
112
ALA
112
L
PRO
113
n
113
PRO
113
L
SER
114
n
114
SER
114
L
VAL
115
n
115
VAL
115
L
PHE
116
n
116
PHE
116
L
ILE
117
n
117
ILE
117
L
PHE
118
n
118
PHE
118
L
PRO
119
n
119
PRO
119
L
PRO
120
n
120
PRO
120
L
SER
121
n
121
SER
121
L
ASP
122
n
122
ASP
122
L
GLU
123
n
123
GLU
123
L
GLN
124
n
124
GLN
124
L
LEU
125
n
125
LEU
125
L
LYS
126
n
126
LYS
126
L
SER
127
n
127
SER
127
L
GLY
128
n
128
GLY
128
L
THR
129
n
129
THR
129
L
ALA
130
n
130
ALA
130
L
SER
131
n
131
SER
131
L
VAL
132
n
132
VAL
132
L
VAL
133
n
133
VAL
133
L
CYS
134
n
134
CYS
134
L
LEU
135
n
135
LEU
135
L
LEU
136
n
136
LEU
136
L
ASN
137
n
137
ASN
137
L
ASN
138
n
138
ASN
138
L
PHE
139
n
139
PHE
139
L
TYR
140
n
140
TYR
140
L
PRO
141
n
141
PRO
141
L
ARG
142
n
142
ARG
142
L
GLU
143
n
143
GLU
143
L
ALA
144
n
144
ALA
144
L
LYS
145
n
145
LYS
145
L
VAL
146
n
146
VAL
146
L
GLN
147
n
147
GLN
147
L
TRP
148
n
148
TRP
148
L
LYS
149
n
149
LYS
149
L
VAL
150
n
150
VAL
150
L
ASP
151
n
151
ASP
151
L
ASN
152
n
152
ASN
152
L
ALA
153
n
153
ALA
153
L
LEU
154
n
154
LEU
154
L
GLN
155
n
155
GLN
155
L
SER
156
n
156
SER
156
L
GLY
157
n
157
GLY
157
L
ASN
158
n
158
ASN
158
L
SER
159
n
159
SER
159
L
GLN
160
n
160
GLN
160
L
GLU
161
n
161
GLU
161
L
SER
162
n
162
SER
162
L
VAL
163
n
163
VAL
163
L
THR
164
n
164
THR
164
L
GLU
165
n
165
GLU
165
L
GLN
166
n
166
GLN
166
L
ASP
167
n
167
ASP
167
L
SER
168
n
168
SER
168
L
LYS
169
n
169
LYS
169
L
ASP
170
n
170
ASP
170
L
SER
171
n
171
SER
171
L
THR
172
n
172
THR
172
L
TYR
173
n
173
TYR
173
L
SER
174
n
174
SER
174
L
LEU
175
n
175
LEU
175
L
SER
176
n
176
SER
176
L
SER
177
n
177
SER
177
L
THR
178
n
178
THR
178
L
LEU
179
n
179
LEU
179
L
THR
180
n
180
THR
180
L
LEU
181
n
181
LEU
181
L
SER
182
n
182
SER
182
L
LYS
183
n
183
LYS
183
L
ALA
184
n
184
ALA
184
L
ASP
185
n
185
ASP
185
L
TYR
186
n
186
TYR
186
L
GLU
187
n
187
GLU
187
L
LYS
188
n
188
LYS
188
L
HIS
189
n
189
HIS
189
L
LYS
190
n
190
LYS
190
L
VAL
191
n
191
VAL
191
L
TYR
192
n
192
TYR
192
L
ALA
193
n
193
ALA
193
L
CYS
194
n
194
CYS
194
L
GLU
195
n
195
GLU
195
L
VAL
196
n
196
VAL
196
L
THR
197
n
197
THR
197
L
HIS
198
n
198
HIS
198
L
GLN
199
n
199
GLN
199
L
GLY
200
n
200
GLY
200
L
LEU
201
n
201
LEU
201
L
SER
202
n
202
SER
202
L
SER
203
n
203
SER
203
L
PRO
204
n
204
PRO
204
L
VAL
205
n
205
VAL
205
L
THR
206
n
206
THR
206
L
LYS
207
n
207
LYS
207
L
SER
208
n
208
SER
208
L
PHE
209
n
209
PHE
209
L
ASN
210
n
210
ASN
210
L
ARG
211
n
211
ARG
211
L
GLY
212
n
212
GLY
212
L
n
213
213
L
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
VAL
5
n
5
VAL
5
H
GLU
6
n
6
GLU
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
GLY
9
n
9
GLY
9
H
GLY
10
n
10
GLY
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
LYS
13
n
13
LYS
13
H
ALA
14
n
14
ALA
14
H
GLY
15
n
15
GLY
15
H
GLY
16
n
16
GLY
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
ILE
19
n
19
ILE
19
H
LEU
20
n
20
LEU
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
GLY
23
n
23
GLY
23
H
VAL
24
n
24
VAL
24
H
SER
25
n
25
SER
25
H
ASN
26
n
26
ASN
26
H
PHE
27
n
27
PHE
27
H
ARG
28
n
28
ARG
28
H
ILE
29
n
29
ILE
29
H
SER
30
n
30
SER
30
H
ALA
31
n
31
ALA
31
H
HIS
32
n
32
HIS
32
H
THR
33
n
33
THR
33
H
MET
34
n
34
MET
34
H
ASN
35
n
35
ASN
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
ARG
38
n
38
ARG
38
H
ARG
39
n
39
ARG
39
H
VAL
40
n
40
VAL
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
GLY
43
n
43
GLY
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
VAL
48
n
48
VAL
48
H
ALA
49
n
49
ALA
49
H
SER
50
n
50
SER
50
H
ILE
51
n
51
ILE
51
H
SER
52
n
52
SER
52
H
THR
52
n
53
A
THR
52
H
SER
53
n
54
SER
53
H
SER
54
n
55
SER
54
H
THR
55
n
56
THR
55
H
TYR
56
n
57
TYR
56
H
ARG
57
n
58
ARG
57
H
ASP
58
n
59
ASP
58
H
TYR
59
n
60
TYR
59
H
ALA
60
n
61
ALA
60
H
ASP
61
n
62
ASP
61
H
ALA
62
n
63
ALA
62
H
VAL
63
n
64
VAL
63
H
LYS
64
n
65
LYS
64
H
GLY
65
n
66
GLY
65
H
ARG
66
n
67
ARG
66
H
PHE
67
n
68
PHE
67
H
THR
68
n
69
THR
68
H
VAL
69
n
70
VAL
69
H
SER
70
n
71
SER
70
H
ARG
71
n
72
ARG
71
H
ASP
72
n
73
ASP
72
H
ASP
73
n
74
ASP
73
H
LEU
74
n
75
LEU
74
H
GLU
75
n
76
GLU
75
H
ASP
76
n
77
ASP
76
H
PHE
77
n
78
PHE
77
H
VAL
78
n
79
VAL
78
H
TYR
79
n
80
TYR
79
H
LEU
80
n
81
LEU
80
H
GLN
81
n
82
GLN
81
H
MET
82
n
83
MET
82
H
HIS
82
n
84
A
HIS
82
H
LYS
82
n
85
B
LYS
82
H
MET
82
n
86
C
MET
82
H
ARG
83
n
87
ARG
83
H
VAL
84
n
88
VAL
84
H
GLU
85
n
89
GLU
85
H
ASP
86
n
90
ASP
86
H
THR
87
n
91
THR
87
H
ALA
88
n
92
ALA
88
H
ILE
89
n
93
ILE
89
H
TYR
90
n
94
TYR
90
H
TYR
91
n
95
TYR
91
H
CYS
92
n
96
CYS
92
H
ALA
93
n
97
ALA
93
H
ARG
94
n
98
ARG
94
H
LYS
95
n
99
LYS
95
H
GLY
96
n
100
GLY
96
H
SER
97
n
101
SER
97
H
ASP
98
n
102
ASP
98
H
ARG
99
n
103
ARG
99
H
LEU
100
n
104
LEU
100
H
SER
100
n
105
A
SER
100
H
ASP
100
n
106
B
ASP
100
H
ASN
100
n
107
C
ASN
100
H
ASP
100
n
108
D
ASP
100
H
PRO
100
n
109
E
PRO
100
H
PHE
100
n
110
F
PHE
100
H
ASP
101
n
111
ASP
101
H
ALA
102
n
112
ALA
102
H
TRP
103
n
113
TRP
103
H
GLY
104
n
114
GLY
104
H
PRO
105
n
115
PRO
105
H
GLY
106
n
116
GLY
106
H
THR
107
n
117
THR
107
H
VAL
108
n
118
VAL
108
H
VAL
109
n
119
VAL
109
H
THR
110
n
120
THR
110
H
VAL
111
n
121
VAL
111
H
SER
112
n
122
SER
112
H
PRO
113
n
123
PRO
113
H
ALA
114
n
124
ALA
114
H
SER
115
n
125
SER
115
H
THR
116
n
126
THR
116
H
LYS
117
n
127
LYS
117
H
GLY
118
n
128
GLY
118
H
PRO
119
n
129
PRO
119
H
SER
120
n
130
SER
120
H
VAL
121
n
131
VAL
121
H
PHE
122
n
132
PHE
122
H
PRO
123
n
133
PRO
123
H
LEU
124
n
134
LEU
124
H
ALA
125
n
135
ALA
125
H
PRO
126
n
136
PRO
126
H
SER
127
n
137
SER
127
H
n
138
130
H
n
139
131
H
n
140
132
H
n
141
133
H
SER
134
n
142
SER
134
H
GLY
135
n
143
GLY
135
H
GLY
136
n
144
GLY
136
H
THR
137
n
145
THR
137
H
ALA
138
n
146
ALA
138
H
ALA
139
n
147
ALA
139
H
LEU
140
n
148
LEU
140
H
GLY
141
n
149
GLY
141
H
CYS
142
n
150
CYS
142
H
LEU
143
n
151
LEU
143
H
VAL
144
n
152
VAL
144
H
LYS
145
n
153
LYS
145
H
ASP
146
n
154
ASP
146
H
TYR
147
n
155
TYR
147
H
PHE
148
n
156
PHE
148
H
PRO
149
n
157
PRO
149
H
GLU
150
n
158
GLU
150
H
PRO
151
n
159
PRO
151
H
VAL
152
n
160
VAL
152
H
THR
153
n
161
THR
153
H
VAL
154
n
162
VAL
154
H
SER
156
n
163
SER
156
H
TRP
157
n
164
TRP
157
H
ASN
162
n
165
ASN
162
H
SER
163
n
166
SER
163
H
GLY
164
n
167
GLY
164
H
ALA
165
n
168
ALA
165
H
LEU
166
n
169
LEU
166
H
THR
167
n
170
THR
167
H
SER
168
n
171
SER
168
H
GLY
169
n
172
GLY
169
H
VAL
171
n
173
VAL
171
H
HIS
172
n
174
HIS
172
H
THR
173
n
175
THR
173
H
PHE
174
n
176
PHE
174
H
PRO
175
n
177
PRO
175
H
ALA
176
n
178
ALA
176
H
VAL
177
n
179
VAL
177
H
LEU
178
n
180
LEU
178
H
GLN
179
n
181
GLN
179
H
SER
180
n
182
SER
180
H
SER
182
n
183
SER
182
H
GLY
183
n
184
GLY
183
H
LEU
184
n
185
LEU
184
H
TYR
185
n
186
TYR
185
H
SER
186
n
187
SER
186
H
LEU
187
n
188
LEU
187
H
SER
188
n
189
SER
188
H
SER
189
n
190
SER
189
H
VAL
190
n
191
VAL
190
H
VAL
191
n
192
VAL
191
H
THR
192
n
193
THR
192
H
VAL
193
n
194
VAL
193
H
PRO
194
n
195
PRO
194
H
SER
195
n
196
SER
195
H
SER
196
n
197
SER
196
H
SER
197
n
198
SER
197
H
LEU
198
n
199
LEU
198
H
GLY
199
n
200
GLY
199
H
THR
200
n
201
THR
200
H
GLN
203
n
202
GLN
203
H
THR
205
n
203
THR
205
H
TYR
206
n
204
TYR
206
H
ILE
207
n
205
ILE
207
H
CYS
208
n
206
CYS
208
H
ASN
209
n
207
ASN
209
H
VAL
210
n
208
VAL
210
H
ASN
211
n
209
ASN
211
H
HIS
212
n
210
HIS
212
H
LYS
213
n
211
LYS
213
H
PRO
214
n
212
PRO
214
H
SER
215
n
213
SER
215
H
ASN
216
n
214
ASN
216
H
THR
217
n
215
THR
217
H
LYS
218
n
216
LYS
218
H
VAL
219
n
217
VAL
219
H
ASP
220
n
218
ASP
220
H
LYS
221
n
219
LYS
221
H
LYS
222
n
220
LYS
222
H
VAL
225
n
221
VAL
225
H
GLU
226
n
222
GLU
226
H
PRO
227
n
223
PRO
227
H
LYS
228
n
224
LYS
228
H
ALA
1
n
1
ALA
1
K
VAL
2
n
2
VAL
2
K
VAL
3
n
3
VAL
3
K
MET
4
n
4
MET
4
K
THR
5
n
5
THR
5
K
GLN
6
n
6
GLN
6
K
SER
7
n
7
SER
7
K
PRO
8
n
8
PRO
8
K
SER
9
n
9
SER
9
K
THR
10
n
10
THR
10
K
LEU
11
n
11
LEU
11
K
SER
12
n
12
SER
12
K
ALA
13
n
13
ALA
13
K
SER
14
n
14
SER
14
K
VAL
15
n
15
VAL
15
K
GLY
16
n
16
GLY
16
K
ASP
17
n
17
ASP
17
K
THR
18
n
18
THR
18
K
ILE
19
n
19
ILE
19
K
THR
20
n
20
THR
20
K
ILE
21
n
21
ILE
21
K
THR
22
n
22
THR
22
K
CYS
23
n
23
CYS
23
K
ARG
24
n
24
ARG
24
K
ALA
25
n
25
ALA
25
K
SER
26
n
26
SER
26
K
GLN
27
n
27
GLN
27
K
SER
28
n
28
SER
28
K
ILE
29
n
29
ILE
29
K
GLU
30
n
30
GLU
30
K
THR
31
n
31
THR
31
K
TRP
32
n
32
TRP
32
K
LEU
33
n
33
LEU
33
K
ALA
34
n
34
ALA
34
K
TRP
35
n
35
TRP
35
K
TYR
36
n
36
TYR
36
K
GLN
37
n
37
GLN
37
K
GLN
38
n
38
GLN
38
K
LYS
39
n
39
LYS
39
K
PRO
40
n
40
PRO
40
K
GLY
41
n
41
GLY
41
K
LYS
42
n
42
LYS
42
K
ALA
43
n
43
ALA
43
K
PRO
44
n
44
PRO
44
K
LYS
45
n
45
LYS
45
K
LEU
46
n
46
LEU
46
K
LEU
47
n
47
LEU
47
K
ILE
48
n
48
ILE
48
K
TYR
49
n
49
TYR
49
K
LYS
50
n
50
LYS
50
K
ALA
51
n
51
ALA
51
K
SER
52
n
52
SER
52
K
THR
53
n
53
THR
53
K
LEU
54
n
54
LEU
54
K
LYS
55
n
55
LYS
55
K
THR
56
n
56
THR
56
K
GLY
57
n
57
GLY
57
K
VAL
58
n
58
VAL
58
K
PRO
59
n
59
PRO
59
K
SER
60
n
60
SER
60
K
ARG
61
n
61
ARG
61
K
PHE
62
n
62
PHE
62
K
SER
63
n
63
SER
63
K
GLY
64
n
64
GLY
64
K
SER
65
n
65
SER
65
K
GLY
66
n
66
GLY
66
K
SER
67
n
67
SER
67
K
GLY
68
n
68
GLY
68
K
THR
69
n
69
THR
69
K
GLU
70
n
70
GLU
70
K
PHE
71
n
71
PHE
71
K
THR
72
n
72
THR
72
K
LEU
73
n
73
LEU
73
K
THR
74
n
74
THR
74
K
ILE
75
n
75
ILE
75
K
SER
76
n
76
SER
76
K
GLY
77
n
77
GLY
77
K
LEU
78
n
78
LEU
78
K
GLN
79
n
79
GLN
79
K
PHE
80
n
80
PHE
80
K
ASP
81
n
81
ASP
81
K
ASP
82
n
82
ASP
82
K
PHE
83
n
83
PHE
83
K
ALA
84
n
84
ALA
84
K
THR
85
n
85
THR
85
K
TYR
86
n
86
TYR
86
K
HIS
87
n
87
HIS
87
K
CYS
88
n
88
CYS
88
K
GLN
89
n
89
GLN
89
K
HIS
90
n
90
HIS
90
K
TYR
91
n
91
TYR
91
K
ALA
92
n
92
ALA
92
K
GLY
93
n
93
GLY
93
K
TYR
94
n
94
TYR
94
K
SER
95
n
95
SER
95
K
ALA
96
n
96
ALA
96
K
THR
97
n
97
THR
97
K
PHE
98
n
98
PHE
98
K
GLY
99
n
99
GLY
99
K
GLN
100
n
100
GLN
100
K
GLY
101
n
101
GLY
101
K
THR
102
n
102
THR
102
K
ARG
103
n
103
ARG
103
K
VAL
104
n
104
VAL
104
K
GLU
105
n
105
GLU
105
K
ILE
106
n
106
ILE
106
K
LYS
107
n
107
LYS
107
K
ARG
108
n
108
ARG
108
K
THR
109
n
109
THR
109
K
VAL
110
n
110
VAL
110
K
ALA
111
n
111
ALA
111
K
ALA
112
n
112
ALA
112
K
PRO
113
n
113
PRO
113
K
SER
114
n
114
SER
114
K
VAL
115
n
115
VAL
115
K
PHE
116
n
116
PHE
116
K
ILE
117
n
117
ILE
117
K
PHE
118
n
118
PHE
118
K
PRO
119
n
119
PRO
119
K
PRO
120
n
120
PRO
120
K
SER
121
n
121
SER
121
K
ASP
122
n
122
ASP
122
K
GLU
123
n
123
GLU
123
K
GLN
124
n
124
GLN
124
K
LEU
125
n
125
LEU
125
K
LYS
126
n
126
LYS
126
K
SER
127
n
127
SER
127
K
GLY
128
n
128
GLY
128
K
THR
129
n
129
THR
129
K
ALA
130
n
130
ALA
130
K
SER
131
n
131
SER
131
K
VAL
132
n
132
VAL
132
K
VAL
133
n
133
VAL
133
K
CYS
134
n
134
CYS
134
K
LEU
135
n
135
LEU
135
K
LEU
136
n
136
LEU
136
K
ASN
137
n
137
ASN
137
K
ASN
138
n
138
ASN
138
K
PHE
139
n
139
PHE
139
K
TYR
140
n
140
TYR
140
K
PRO
141
n
141
PRO
141
K
ARG
142
n
142
ARG
142
K
GLU
143
n
143
GLU
143
K
ALA
144
n
144
ALA
144
K
LYS
145
n
145
LYS
145
K
VAL
146
n
146
VAL
146
K
GLN
147
n
147
GLN
147
K
TRP
148
n
148
TRP
148
K
LYS
149
n
149
LYS
149
K
VAL
150
n
150
VAL
150
K
ASP
151
n
151
ASP
151
K
ASN
152
n
152
ASN
152
K
ALA
153
n
153
ALA
153
K
LEU
154
n
154
LEU
154
K
GLN
155
n
155
GLN
155
K
SER
156
n
156
SER
156
K
GLY
157
n
157
GLY
157
K
ASN
158
n
158
ASN
158
K
SER
159
n
159
SER
159
K
GLN
160
n
160
GLN
160
K
GLU
161
n
161
GLU
161
K
SER
162
n
162
SER
162
K
VAL
163
n
163
VAL
163
K
THR
164
n
164
THR
164
K
GLU
165
n
165
GLU
165
K
GLN
166
n
166
GLN
166
K
ASP
167
n
167
ASP
167
K
SER
168
n
168
SER
168
K
LYS
169
n
169
LYS
169
K
ASP
170
n
170
ASP
170
K
SER
171
n
171
SER
171
K
THR
172
n
172
THR
172
K
TYR
173
n
173
TYR
173
K
SER
174
n
174
SER
174
K
LEU
175
n
175
LEU
175
K
SER
176
n
176
SER
176
K
SER
177
n
177
SER
177
K
THR
178
n
178
THR
178
K
LEU
179
n
179
LEU
179
K
THR
180
n
180
THR
180
K
LEU
181
n
181
LEU
181
K
SER
182
n
182
SER
182
K
LYS
183
n
183
LYS
183
K
ALA
184
n
184
ALA
184
K
ASP
185
n
185
ASP
185
K
TYR
186
n
186
TYR
186
K
GLU
187
n
187
GLU
187
K
LYS
188
n
188
LYS
188
K
HIS
189
n
189
HIS
189
K
LYS
190
n
190
LYS
190
K
VAL
191
n
191
VAL
191
K
TYR
192
n
192
TYR
192
K
ALA
193
n
193
ALA
193
K
CYS
194
n
194
CYS
194
K
GLU
195
n
195
GLU
195
K
VAL
196
n
196
VAL
196
K
THR
197
n
197
THR
197
K
HIS
198
n
198
HIS
198
K
GLN
199
n
199
GLN
199
K
GLY
200
n
200
GLY
200
K
LEU
201
n
201
LEU
201
K
SER
202
n
202
SER
202
K
SER
203
n
203
SER
203
K
PRO
204
n
204
PRO
204
K
VAL
205
n
205
VAL
205
K
THR
206
n
206
THR
206
K
LYS
207
n
207
LYS
207
K
SER
208
n
208
SER
208
K
PHE
209
n
209
PHE
209
K
ASN
210
n
210
ASN
210
K
ARG
211
n
211
ARG
211
K
GLY
212
n
212
GLY
212
K
GLU
213
n
213
GLU
213
K
GLU
1
n
1
GLU
1
M
VAL
2
n
2
VAL
2
M
GLN
3
n
3
GLN
3
M
LEU
4
n
4
LEU
4
M
VAL
5
n
5
VAL
5
M
GLU
6
n
6
GLU
6
M
SER
7
n
7
SER
7
M
GLY
8
n
8
GLY
8
M
GLY
9
n
9
GLY
9
M
GLY
10
n
10
GLY
10
M
LEU
11
n
11
LEU
11
M
VAL
12
n
12
VAL
12
M
LYS
13
n
13
LYS
13
M
ALA
14
n
14
ALA
14
M
GLY
15
n
15
GLY
15
M
GLY
16
n
16
GLY
16
M
SER
17
n
17
SER
17
M
LEU
18
n
18
LEU
18
M
ILE
19
n
19
ILE
19
M
LEU
20
n
20
LEU
20
M
SER
21
n
21
SER
21
M
CYS
22
n
22
CYS
22
M
GLY
23
n
23
GLY
23
M
VAL
24
n
24
VAL
24
M
SER
25
n
25
SER
25
M
ASN
26
n
26
ASN
26
M
PHE
27
n
27
PHE
27
M
ARG
28
n
28
ARG
28
M
ILE
29
n
29
ILE
29
M
SER
30
n
30
SER
30
M
ALA
31
n
31
ALA
31
M
HIS
32
n
32
HIS
32
M
THR
33
n
33
THR
33
M
MET
34
n
34
MET
34
M
ASN
35
n
35
ASN
35
M
TRP
36
n
36
TRP
36
M
VAL
37
n
37
VAL
37
M
ARG
38
n
38
ARG
38
M
ARG
39
n
39
ARG
39
M
VAL
40
n
40
VAL
40
M
PRO
41
n
41
PRO
41
M
GLY
42
n
42
GLY
42
M
GLY
43
n
43
GLY
43
M
GLY
44
n
44
GLY
44
M
LEU
45
n
45
LEU
45
M
GLU
46
n
46
GLU
46
M
TRP
47
n
47
TRP
47
M
VAL
48
n
48
VAL
48
M
ALA
49
n
49
ALA
49
M
SER
50
n
50
SER
50
M
ILE
51
n
51
ILE
51
M
SER
52
n
52
SER
52
M
THR
52
n
53
A
THR
52
M
SER
53
n
54
SER
53
M
SER
54
n
55
SER
54
M
THR
55
n
56
THR
55
M
TYR
56
n
57
TYR
56
M
ARG
57
n
58
ARG
57
M
ASP
58
n
59
ASP
58
M
TYR
59
n
60
TYR
59
M
ALA
60
n
61
ALA
60
M
ASP
61
n
62
ASP
61
M
ALA
62
n
63
ALA
62
M
VAL
63
n
64
VAL
63
M
LYS
64
n
65
LYS
64
M
GLY
65
n
66
GLY
65
M
ARG
66
n
67
ARG
66
M
PHE
67
n
68
PHE
67
M
THR
68
n
69
THR
68
M
VAL
69
n
70
VAL
69
M
SER
70
n
71
SER
70
M
ARG
71
n
72
ARG
71
M
ASP
72
n
73
ASP
72
M
ASP
73
n
74
ASP
73
M
LEU
74
n
75
LEU
74
M
GLU
75
n
76
GLU
75
M
ASP
76
n
77
ASP
76
M
PHE
77
n
78
PHE
77
M
VAL
78
n
79
VAL
78
M
TYR
79
n
80
TYR
79
M
LEU
80
n
81
LEU
80
M
GLN
81
n
82
GLN
81
M
MET
82
n
83
MET
82
M
HIS
82
n
84
A
HIS
82
M
LYS
82
n
85
B
LYS
82
M
MET
82
n
86
C
MET
82
M
ARG
83
n
87
ARG
83
M
VAL
84
n
88
VAL
84
M
GLU
85
n
89
GLU
85
M
ASP
86
n
90
ASP
86
M
THR
87
n
91
THR
87
M
ALA
88
n
92
ALA
88
M
ILE
89
n
93
ILE
89
M
TYR
90
n
94
TYR
90
M
TYR
91
n
95
TYR
91
M
CYS
92
n
96
CYS
92
M
ALA
93
n
97
ALA
93
M
ARG
94
n
98
ARG
94
M
LYS
95
n
99
LYS
95
M
GLY
96
n
100
GLY
96
M
SER
97
n
101
SER
97
M
ASP
98
n
102
ASP
98
M
ARG
99
n
103
ARG
99
M
LEU
100
n
104
LEU
100
M
SER
100
n
105
A
SER
100
M
ASP
100
n
106
B
ASP
100
M
ASN
100
n
107
C
ASN
100
M
ASP
100
n
108
D
ASP
100
M
PRO
100
n
109
E
PRO
100
M
PHE
100
n
110
F
PHE
100
M
ASP
101
n
111
ASP
101
M
ALA
102
n
112
ALA
102
M
TRP
103
n
113
TRP
103
M
GLY
104
n
114
GLY
104
M
PRO
105
n
115
PRO
105
M
GLY
106
n
116
GLY
106
M
THR
107
n
117
THR
107
M
VAL
108
n
118
VAL
108
M
VAL
109
n
119
VAL
109
M
THR
110
n
120
THR
110
M
VAL
111
n
121
VAL
111
M
SER
112
n
122
SER
112
M
PRO
113
n
123
PRO
113
M
ALA
114
n
124
ALA
114
M
SER
115
n
125
SER
115
M
THR
116
n
126
THR
116
M
LYS
117
n
127
LYS
117
M
GLY
118
n
128
GLY
118
M
PRO
119
n
129
PRO
119
M
SER
120
n
130
SER
120
M
VAL
121
n
131
VAL
121
M
PHE
122
n
132
PHE
122
M
PRO
123
n
133
PRO
123
M
LEU
124
n
134
LEU
124
M
ALA
125
n
135
ALA
125
M
PRO
126
n
136
PRO
126
M
SER
127
n
137
SER
127
M
n
138
130
M
n
139
131
M
n
140
132
M
n
141
133
M
n
142
134
M
GLY
135
n
143
GLY
135
M
GLY
136
n
144
GLY
136
M
THR
137
n
145
THR
137
M
ALA
138
n
146
ALA
138
M
ALA
139
n
147
ALA
139
M
LEU
140
n
148
LEU
140
M
GLY
141
n
149
GLY
141
M
CYS
142
n
150
CYS
142
M
LEU
143
n
151
LEU
143
M
VAL
144
n
152
VAL
144
M
LYS
145
n
153
LYS
145
M
ASP
146
n
154
ASP
146
M
TYR
147
n
155
TYR
147
M
PHE
148
n
156
PHE
148
M
PRO
149
n
157
PRO
149
M
GLU
150
n
158
GLU
150
M
PRO
151
n
159
PRO
151
M
VAL
152
n
160
VAL
152
M
THR
153
n
161
THR
153
M
VAL
154
n
162
VAL
154
M
SER
156
n
163
SER
156
M
TRP
157
n
164
TRP
157
M
ASN
162
n
165
ASN
162
M
SER
163
n
166
SER
163
M
GLY
164
n
167
GLY
164
M
ALA
165
n
168
ALA
165
M
LEU
166
n
169
LEU
166
M
THR
167
n
170
THR
167
M
SER
168
n
171
SER
168
M
GLY
169
n
172
GLY
169
M
VAL
171
n
173
VAL
171
M
HIS
172
n
174
HIS
172
M
THR
173
n
175
THR
173
M
PHE
174
n
176
PHE
174
M
PRO
175
n
177
PRO
175
M
ALA
176
n
178
ALA
176
M
VAL
177
n
179
VAL
177
M
LEU
178
n
180
LEU
178
M
GLN
179
n
181
GLN
179
M
SER
180
n
182
SER
180
M
SER
182
n
183
SER
182
M
GLY
183
n
184
GLY
183
M
LEU
184
n
185
LEU
184
M
TYR
185
n
186
TYR
185
M
SER
186
n
187
SER
186
M
LEU
187
n
188
LEU
187
M
SER
188
n
189
SER
188
M
SER
189
n
190
SER
189
M
VAL
190
n
191
VAL
190
M
VAL
191
n
192
VAL
191
M
THR
192
n
193
THR
192
M
VAL
193
n
194
VAL
193
M
PRO
194
n
195
PRO
194
M
SER
195
n
196
SER
195
M
SER
196
n
197
SER
196
M
SER
197
n
198
SER
197
M
LEU
198
n
199
LEU
198
M
GLY
199
n
200
GLY
199
M
THR
200
n
201
THR
200
M
GLN
203
n
202
GLN
203
M
THR
205
n
203
THR
205
M
TYR
206
n
204
TYR
206
M
ILE
207
n
205
ILE
207
M
CYS
208
n
206
CYS
208
M
ASN
209
n
207
ASN
209
M
VAL
210
n
208
VAL
210
M
ASN
211
n
209
ASN
211
M
HIS
212
n
210
HIS
212
M
LYS
213
n
211
LYS
213
M
PRO
214
n
212
PRO
214
M
SER
215
n
213
SER
215
M
ASN
216
n
214
ASN
216
M
THR
217
n
215
THR
217
M
LYS
218
n
216
LYS
218
M
VAL
219
n
217
VAL
219
M
ASP
220
n
218
ASP
220
M
LYS
221
n
219
LYS
221
M
LYS
222
n
220
LYS
222
M
VAL
225
n
221
VAL
225
M
GLU
226
n
222
GLU
226
M
PRO
227
n
223
PRO
227
M
LYS
228
n
224
LYS
228
M
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
1900
-9
21790
1960
-10
21760
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
N
THR
5
A
N
THR
5
L
O
ARG
24
A
O
ARG
24
L
N
ILE
21
A
N
ILE
21
L
O
LEU
73
A
O
LEU
73
L
O
THR
72
A
O
THR
72
L
N
SER
65
A
N
SER
65
L
N
LEU
11
A
N
LEU
11
L
O
ARG
103
A
O
ARG
103
L
O
THR
102
A
O
THR
102
L
N
TYR
86
A
N
TYR
86
L
O
THR
85
A
O
THR
85
L
N
GLN
38
A
N
GLN
38
L
N
GLN
37
A
N
GLN
37
L
O
LYS
45
A
O
LYS
45
L
N
TYR
49
A
N
TYR
49
L
O
THR
53
A
O
THR
53
L
N
LEU
11
A
N
LEU
11
L
O
ARG
103
A
O
ARG
103
L
O
THR
102
A
O
THR
102
L
N
TYR
86
A
N
TYR
86
L
N
HIS
90
A
N
HIS
90
L
O
THR
97
A
O
THR
97
L
N
PHE
116
A
N
PHE
116
L
O
LEU
135
A
O
LEU
135
L
N
VAL
132
A
N
VAL
132
L
O
LEU
179
A
O
LEU
179
L
O
THR
178
A
O
THR
178
L
N
GLN
160
A
N
GLN
160
L
O
ALA
153
A
O
ALA
153
L
N
VAL
150
A
N
VAL
150
L
N
LYS
145
A
N
LYS
145
L
O
THR
197
A
O
THR
197
L
N
VAL
196
A
N
VAL
196
L
O
VAL
205
A
O
VAL
205
H
N
VAL
5
B
N
VAL
5
H
O
GLY
23
B
O
GLY
23
H
N
CYS
22
B
N
CYS
22
H
O
VAL
78
B
O
VAL
79
H
O
PHE
77
B
O
PHE
78
H
N
ASP
72
B
N
ASP
73
H
N
VAL
12
B
N
VAL
12
H
O
SER
112
B
O
SER
122
H
O
THR
107
B
O
THR
117
H
N
TYR
90
B
N
TYR
94
H
O
TYR
91
B
O
TYR
95
H
N
VAL
37
B
N
VAL
37
H
N
MET
34
B
N
MET
34
H
O
ILE
51
B
O
ILE
51
H
N
SER
50
B
N
SER
50
H
O
ASP
58
B
O
ASP
59
H
N
VAL
12
B
N
VAL
12
H
O
SER
112
B
O
SER
122
H
O
THR
107
B
O
THR
117
H
N
TYR
90
B
N
TYR
94
H
N
ARG
94
B
N
ARG
98
H
O
ALA
102
B
O
ALA
112
H
N
LEU
124
B
N
LEU
134
H
O
GLY
141
B
O
GLY
149
H
N
VAL
144
B
N
VAL
152
H
O
LEU
187
B
O
LEU
188
H
O
VAL
190
B
O
VAL
191
H
N
HIS
172
B
N
HIS
174
H
N
LEU
124
B
N
LEU
134
H
O
GLY
141
B
O
GLY
149
H
N
VAL
144
B
N
VAL
152
H
O
LEU
187
B
O
LEU
188
H
O
SER
186
B
O
SER
187
H
N
VAL
177
B
N
VAL
179
H
N
SER
156
B
N
SER
163
H
O
ASN
209
B
O
ASN
207
H
N
VAL
210
B
N
VAL
208
H
O
VAL
219
B
O
VAL
217
K
N
THR
5
C
N
THR
5
K
O
ARG
24
C
O
ARG
24
K
N
ILE
21
C
N
ILE
21
K
O
LEU
73
C
O
LEU
73
K
O
THR
72
C
O
THR
72
K
N
SER
65
C
N
SER
65
K
N
LEU
11
C
N
LEU
11
K
O
ARG
103
C
O
ARG
103
K
O
THR
102
C
O
THR
102
K
N
TYR
86
C
N
TYR
86
K
O
THR
85
C
O
THR
85
K
N
GLN
38
C
N
GLN
38
K
N
GLN
37
C
N
GLN
37
K
O
LYS
45
C
O
LYS
45
K
N
TYR
49
C
N
TYR
49
K
O
THR
53
C
O
THR
53
K
N
LEU
11
C
N
LEU
11
K
O
ARG
103
C
O
ARG
103
K
O
THR
102
C
O
THR
102
K
N
TYR
86
C
N
TYR
86
K
N
HIS
90
C
N
HIS
90
K
O
THR
97
C
O
THR
97
K
N
PHE
116
C
N
PHE
116
K
O
LEU
135
C
O
LEU
135
K
N
VAL
132
C
N
VAL
132
K
O
LEU
179
C
O
LEU
179
K
O
THR
178
C
O
THR
178
K
N
GLN
160
C
N
GLN
160
K
O
ALA
153
C
O
ALA
153
K
N
VAL
150
C
N
VAL
150
K
N
LYS
145
C
N
LYS
145
K
O
THR
197
C
O
THR
197
K
N
VAL
196
C
N
VAL
196
K
O
VAL
205
C
O
VAL
205
M
N
VAL
5
D
N
VAL
5
M
O
GLY
23
D
O
GLY
23
M
N
CYS
22
D
N
CYS
22
M
O
VAL
78
D
O
VAL
79
M
O
PHE
77
D
O
PHE
78
M
N
ASP
72
D
N
ASP
73
M
N
VAL
12
D
N
VAL
12
M
O
SER
112
D
O
SER
122
M
O
THR
107
D
O
THR
117
M
N
TYR
90
D
N
TYR
94
M
O
ALA
93
D
O
ALA
97
M
N
ASN
35
D
N
ASN
35
M
N
MET
34
D
N
MET
34
M
O
ILE
51
D
O
ILE
51
M
N
SER
50
D
N
SER
50
M
O
ASP
58
D
O
ASP
59
M
N
VAL
12
D
N
VAL
12
M
O
SER
112
D
O
SER
122
M
O
THR
107
D
O
THR
117
M
N
TYR
90
D
N
TYR
94
M
N
ARG
94
D
N
ARG
98
M
O
ALA
102
D
O
ALA
112
M
N
PHE
122
D
N
PHE
132
M
O
LEU
143
D
O
LEU
151
M
N
VAL
144
D
N
VAL
152
M
O
LEU
187
D
O
LEU
188
M
O
VAL
190
D
O
VAL
191
M
N
HIS
172
D
N
HIS
174
M
N
PHE
122
D
N
PHE
132
M
O
LEU
143
D
O
LEU
151
M
N
VAL
144
D
N
VAL
152
M
O
LEU
187
D
O
LEU
188
M
O
SER
186
D
O
SER
187
M
N
VAL
177
D
N
VAL
179
M
N
THR
153
D
N
THR
161
M
O
ASN
211
D
O
ASN
209
M
N
HIS
212
D
N
HIS
210
M
O
THR
217
D
O
THR
215
1
H
CG
GLU
1
B
CG
GLU
1
1
Y
1
H
CD
GLU
1
B
CD
GLU
1
1
Y
1
H
OE1
GLU
1
B
OE1
GLU
1
1
Y
1
H
OE2
GLU
1
B
OE2
GLU
1
1
Y
1
K
CG
GLU
213
C
CG
GLU
213
1
Y
1
K
CD
GLU
213
C
CD
GLU
213
1
Y
1
K
OE1
GLU
213
C
OE1
GLU
213
1
Y
1
K
OE2
GLU
213
C
OE2
GLU
213
1
Y
1
L
GLU
213
A
GLU
213
1
Y
1
H
SER
130
B
SER
138
1
Y
1
H
LYS
131
B
LYS
139
1
Y
1
H
SER
132
B
SER
140
1
Y
1
H
THR
133
B
THR
141
1
Y
1
M
SER
130
D
SER
138
1
Y
1
M
LYS
131
D
LYS
139
1
Y
1
M
SER
132
D
SER
140
1
Y
1
M
THR
133
D
THR
141
1
Y
1
M
SER
134
D
SER
142
1
Y
1
M
M
O
NE2
PHE
HIS
148
212
2.05
1
A
A
O3
O5
MAN
MAN
1
2
2.19
1
L
GLU
30
52.92
-107.03
1
L
LEU
47
-99.23
-60.79
1
L
ALA
51
62.08
-28.07
1
L
ALA
84
-166.96
-163.87
1
L
ASN
138
40.74
73.55
1
L
ASN
152
75.38
-15.80
1
L
LYS
190
-97.31
-61.84
1
L
ARG
211
-62.89
98.02
1
H
ASN
26
71.36
31.77
1
H
SER
30
-25.58
-59.46
1
H
VAL
48
-97.78
-76.27
C
1
H
ASN
100
-161.11
96.91
E
1
H
PRO
100
-68.99
-178.26
1
H
ASP
146
58.69
72.16
1
H
PRO
149
-100.90
-161.83
1
H
SER
163
58.12
16.68
1
H
SER
197
-67.55
4.18
1
H
THR
200
-68.75
-73.11
1
K
GLU
30
52.69
-107.92
1
K
PRO
40
-38.46
124.02
1
K
LEU
47
-99.60
-60.81
1
K
ALA
51
62.21
-29.04
1
K
ALA
84
-164.68
-165.01
1
K
ASN
138
39.16
74.76
1
K
ASN
152
75.70
-16.54
1
K
LYS
190
-97.50
-61.83
1
M
SER
30
-25.94
-58.63
1
M
VAL
48
-97.88
-74.15
C
1
M
ASN
100
-160.12
93.14
1
M
ASP
146
11.92
68.73
1
M
PHE
148
172.87
157.20
1
M
GLU
150
14.34
108.87
1
M
SER
163
57.45
0.54
1
M
SER
180
-57.93
0.75
1
M
SER
197
-65.16
8.49
1
M
LEU
198
-65.10
-71.61
1
M
THR
200
-69.33
-73.46
229.740
79.1252
36.040
-29.4222
0.0000
0.0000
-9.5095
0.0000
38.9317
0.8658
0.8403
0.2797
0.2322
0.2345
2.8500
30.0000
1045
21374
4.8900
1.000
1.000
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
PDB entry 1OP3
0.496
2.8500
30.0000
8
6635
92
0
6535
0.3190
0.2921
0.2935
2.9900
100
1911
2011
11
4.9700
59.670
2.85
30.00
3OB0
21555
1
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
refinement
BUSTER
2.8.0
A non-self sugar mimic of the HIV glycan shield shows enhanced antigenicity
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
L
GLN
79
A
GLN
79
HELX_P
L
PHE
83
A
PHE
83
5
1
5
L
SER
121
A
SER
121
HELX_P
L
SER
127
A
SER
127
1
2
7
L
LYS
183
A
LYS
183
HELX_P
L
GLU
187
A
GLU
187
1
3
5
H
THR
52
B
THR
53
HELX_P
H
THR
55
B
THR
56
5
4
4
A
H
ARG
83
B
ARG
87
HELX_P
H
THR
87
B
THR
91
5
5
5
H
SER
163
B
SER
166
HELX_P
H
ALA
165
B
ALA
168
5
6
3
H
SER
196
B
SER
197
HELX_P
H
GLY
199
B
GLY
200
5
7
4
K
GLN
79
C
GLN
79
HELX_P
K
PHE
83
C
PHE
83
5
8
5
K
SER
121
C
SER
121
HELX_P
K
SER
127
C
SER
127
1
9
7
K
LYS
183
C
LYS
183
HELX_P
K
GLU
187
C
GLU
187
1
10
5
M
THR
52
D
THR
53
HELX_P
M
THR
55
D
THR
56
5
11
4
A
M
ARG
83
D
ARG
87
HELX_P
M
THR
87
D
THR
91
5
12
5
M
TRP
157
D
TRP
164
HELX_P
M
ALA
165
D
ALA
168
5
13
5
disulf
2.061
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
88
1_555
disulf
2.035
L
CYS
134
A
SG
CYS
134
1_555
L
CYS
194
A
SG
CYS
194
1_555
disulf
2.043
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
92
B
SG
CYS
96
1_555
disulf
2.034
H
CYS
142
B
SG
CYS
150
1_555
H
CYS
208
B
SG
CYS
206
1_555
disulf
2.049
K
CYS
23
C
SG
CYS
23
1_555
K
CYS
88
C
SG
CYS
88
1_555
disulf
2.026
K
CYS
134
C
SG
CYS
134
1_555
K
CYS
194
C
SG
CYS
194
1_555
disulf
2.041
M
CYS
22
D
SG
CYS
22
1_555
M
CYS
92
D
SG
CYS
96
1_555
disulf
2.045
M
CYS
142
D
SG
CYS
150
1_555
M
CYS
208
D
SG
CYS
206
1_555
covale
1.468
both
sing
A
MAN
1
E
O3
MAN
1_555
A
MAN
2
E
C1
MAN
1_555
covale
1.418
both
sing
A
MAN
2
E
O2
MAN
1_555
A
MAN
3
E
C1
MAN
1_555
covale
1.428
both
sing
A
MAN
3
E
O2
MAN
1_555
A
YYH
4
E
C1
YYH
1_555
covale
1.468
both
sing
B
MAN
1
F
O3
MAN
1_555
B
MAN
2
F
C1
MAN
1_555
covale
1.432
both
sing
B
MAN
2
F
O2
MAN
1_555
B
MAN
3
F
C1
MAN
1_555
covale
1.475
both
sing
B
MAN
3
F
O2
MAN
1_555
B
YYH
4
F
C1
YYH
1_555
IMMUNE SYSTEM
Fab, IMMUNE SYSTEM
L
SER
7
A
SER
7
1
L
PRO
8
A
PRO
8
0.12
L
TYR
140
A
TYR
140
1
L
PRO
141
A
PRO
141
0.15
H
SER
134
B
SER
142
1
H
GLY
135
B
GLY
143
-2.22
H
PHE
148
B
PHE
156
1
H
PRO
149
B
PRO
157
-0.62
H
GLU
150
B
GLU
158
1
H
PRO
151
B
PRO
159
3.22
K
SER
7
C
SER
7
1
K
PRO
8
C
PRO
8
-0.96
K
TYR
140
C
TYR
140
1
K
PRO
141
C
PRO
141
-0.56
M
PHE
148
D
PHE
156
1
M
PRO
149
D
PRO
157
2.43
M
GLU
150
D
GLU
158
1
M
PRO
151
D
PRO
159
26.47
3OB0
PDB
1
1
3OB0
AVVMTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQF
DDFATYHCQHYAGYSATFGQGTRVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ
ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
3OB0
PDB
2
1
3OB0
EVQLVESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVY
LQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV
TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
1
213
3OB0
1
213
3OB0
L
1
1
213
1
213
3OB0
1
213
3OB0
K
1
1
213
1
228
3OB0
1
228
3OB0
H
2
1
224
1
228
3OB0
1
228
3OB0
M
2
1
224
4
6
4
4
4
4
6
4
4
4
3
4
6
4
4
4
4
6
4
4
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
4
A
MET
4
L
SER
7
A
SER
7
L
THR
18
A
THR
18
L
ALA
25
A
ALA
25
L
GLU
70
A
GLU
70
L
SER
76
A
SER
76
L
PHE
62
A
PHE
62
L
SER
67
A
SER
67
L
THR
10
A
THR
10
L
ALA
13
A
ALA
13
L
THR
102
A
THR
102
L
ILE
106
A
ILE
106
L
THR
85
A
THR
85
L
TYR
91
A
TYR
91
L
LEU
33
A
LEU
33
L
GLN
38
A
GLN
38
L
LYS
45
A
LYS
45
L
TYR
49
A
TYR
49
L
THR
53
A
THR
53
L
LEU
54
A
LEU
54
L
THR
10
A
THR
10
L
ALA
13
A
ALA
13
L
THR
102
A
THR
102
L
ILE
106
A
ILE
106
L
THR
85
A
THR
85
L
TYR
91
A
TYR
91
L
ALA
96
A
ALA
96
L
PHE
98
A
PHE
98
L
SER
114
A
SER
114
L
PHE
118
A
PHE
118
L
THR
129
A
THR
129
L
PHE
139
A
PHE
139
L
TYR
173
A
TYR
173
L
SER
182
A
SER
182
L
SER
159
A
SER
159
L
VAL
163
A
VAL
163
L
ALA
153
A
ALA
153
L
LEU
154
A
LEU
154
L
ALA
144
A
ALA
144
L
VAL
150
A
VAL
150
L
VAL
191
A
VAL
191
L
HIS
198
A
HIS
198
L
VAL
205
A
VAL
205
L
ASN
210
A
ASN
210
H
GLN
3
B
GLN
3
H
SER
7
B
SER
7
H
LEU
18
B
LEU
18
H
SER
25
B
SER
25
H
PHE
77
B
PHE
78
H
MET
82
B
MET
83
H
PHE
67
B
PHE
68
H
ASP
72
B
ASP
73
H
GLY
10
B
GLY
10
H
LYS
13
B
LYS
13
H
THR
107
B
THR
117
H
SER
112
B
SER
122
H
ALA
88
B
ALA
92
H
LYS
95
B
LYS
99
H
MET
34
B
MET
34
H
ARG
39
B
ARG
39
H
LEU
45
B
LEU
45
H
ILE
51
B
ILE
51
H
ARG
57
B
ARG
58
H
TYR
59
B
TYR
60
H
GLY
10
B
GLY
10
H
LYS
13
B
LYS
13
H
THR
107
B
THR
117
H
SER
112
B
SER
122
H
ALA
88
B
ALA
92
H
LYS
95
B
LYS
99
H
PHE
100
B
PHE
110
H
TRP
103
B
TRP
113
F
H
SER
120
B
SER
130
H
LEU
124
B
LEU
134
H
THR
137
B
THR
145
H
TYR
147
B
TYR
155
H
TYR
185
B
TYR
186
H
PRO
194
B
PRO
195
H
VAL
171
B
VAL
173
H
THR
173
B
THR
175
H
SER
120
B
SER
130
H
LEU
124
B
LEU
134
H
THR
137
B
THR
145
H
TYR
147
B
TYR
155
H
TYR
185
B
TYR
186
H
PRO
194
B
PRO
195
H
VAL
177
B
VAL
179
H
LEU
178
B
LEU
180
H
THR
153
B
THR
161
H
TRP
157
B
TRP
164
H
ILE
207
B
ILE
205
H
HIS
212
B
HIS
210
H
THR
217
B
THR
215
H
LYS
222
B
LYS
220
K
MET
4
C
MET
4
K
SER
7
C
SER
7
K
ILE
19
C
ILE
19
K
ALA
25
C
ALA
25
K
GLU
70
C
GLU
70
K
ILE
75
C
ILE
75
K
PHE
62
C
PHE
62
K
SER
67
C
SER
67
K
THR
10
C
THR
10
K
ALA
13
C
ALA
13
K
THR
102
C
THR
102
K
ILE
106
C
ILE
106
K
THR
85
C
THR
85
K
TYR
91
C
TYR
91
K
LEU
33
C
LEU
33
K
GLN
38
C
GLN
38
K
LYS
45
C
LYS
45
K
TYR
49
C
TYR
49
K
THR
53
C
THR
53
K
LEU
54
C
LEU
54
K
THR
10
C
THR
10
K
ALA
13
C
ALA
13
K
THR
102
C
THR
102
K
ILE
106
C
ILE
106
K
THR
85
C
THR
85
K
TYR
91
C
TYR
91
K
ALA
96
C
ALA
96
K
PHE
98
C
PHE
98
K
SER
114
C
SER
114
K
PHE
118
C
PHE
118
K
THR
129
C
THR
129
K
PHE
139
C
PHE
139
K
TYR
173
C
TYR
173
K
SER
182
C
SER
182
K
SER
159
C
SER
159
K
VAL
163
C
VAL
163
K
ALA
153
C
ALA
153
K
LEU
154
C
LEU
154
K
ALA
144
C
ALA
144
K
VAL
150
C
VAL
150
K
VAL
191
C
VAL
191
K
HIS
198
C
HIS
198
K
VAL
205
C
VAL
205
K
ASN
210
C
ASN
210
M
GLN
3
D
GLN
3
M
SER
7
D
SER
7
M
LEU
18
D
LEU
18
M
SER
25
D
SER
25
M
PHE
77
D
PHE
78
M
MET
82
D
MET
83
M
PHE
67
D
PHE
68
M
ASP
72
D
ASP
73
M
GLY
10
D
GLY
10
M
LYS
13
D
LYS
13
M
THR
107
D
THR
117
M
SER
112
D
SER
122
M
ALA
88
D
ALA
92
M
LYS
95
D
LYS
99
M
THR
33
D
THR
33
M
ARG
39
D
ARG
39
M
LEU
45
D
LEU
45
M
ILE
51
D
ILE
51
M
ARG
57
D
ARG
58
M
TYR
59
D
TYR
60
M
GLY
10
D
GLY
10
M
LYS
13
D
LYS
13
M
THR
107
D
THR
117
M
SER
112
D
SER
122
M
ALA
88
D
ALA
92
M
LYS
95
D
LYS
99
M
ALA
102
D
ALA
112
M
TRP
103
D
TRP
113
M
SER
120
D
SER
130
M
LEU
124
D
LEU
134
M
THR
137
D
THR
145
M
TYR
147
D
TYR
155
M
TYR
185
D
TYR
186
M
PRO
194
D
PRO
195
M
VAL
171
D
VAL
173
M
THR
173
D
THR
175
M
SER
120
D
SER
130
M
LEU
124
D
LEU
134
M
THR
137
D
THR
145
M
TYR
147
D
TYR
155
M
TYR
185
D
TYR
186
M
PRO
194
D
PRO
195
M
VAL
177
D
VAL
179
M
LEU
178
D
LEU
180
M
VAL
152
D
VAL
160
M
THR
153
D
THR
161
M
ILE
207
D
ILE
205
M
HIS
212
D
HIS
210
M
THR
217
D
THR
215
M
LYS
222
D
LYS
220
19
P 21 21 21