0.011688 0.006748 0.000000 0.000000 0.013496 0.000000 0.000000 0.000000 0.019920 0.00000 0.00000 0.00000 Shenoy, R.T. Sivaraman, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 85.557 85.557 50.201 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C31 H34 N4 O5 542.625 Nalpha-[(benzyloxy)carbonyl]-N-[(1S)-1-(4-tert-butoxybenzyl)-3-diazo-2-oxopropyl]-L-phenylalaninamide Z-Phe-Tyr(t-Bu)-diazomethylketone peptide-like C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N C N 159 N O N 160 N O N 161 N C Y 162 N C Y 163 N C Y 164 N C Y 165 N C Y 166 N C Y 167 N C N 168 N N N 169 S C N 170 N C N 171 N O N 172 N C Y 173 N C Y 174 N C Y 175 N C Y 176 N C Y 177 N C Y 178 N C N 179 N N Y 180 N C N 181 N O Y 182 N C N 183 N C N 184 N C N 185 N C N 186 N C N 187 N C N 188 N C N 189 S C Y 190 N C Y 191 N C Y 192 N C Y 193 N C N 194 N O N 195 N C N 196 N N N 197 N N N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 S C N 237 N C N 238 N C N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N C N 282 N C N 283 N C N 284 N N N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C N 306 N C N 307 N S N 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N N N 345 S C N 346 N C N 347 N O N 348 N C N 349 N C N 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N N N 362 S C N 363 N C N 364 N O N 365 N C N 366 N O N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N N N 376 S C N 377 N C N 378 N O N 379 R C N 380 N O N 381 N C N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N N Y 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N N N 420 S C N 421 N C N 422 N O N 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N C Y 428 N C Y 429 N C N 430 N O N 431 N O N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N N N 444 S C N 445 N C N 446 N O N 447 N C N 448 N C N 449 N C N 450 N O N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing Y 161 N doub Y 162 N sing Y 163 N doub N 164 N sing N 165 N sing Y 166 N sing N 167 N sing Y 168 N doub N 169 N sing Y 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N doub N 180 N sing N 181 N sing Y 182 N sing N 183 N sing N 184 N doub Y 185 N doub N 186 N sing Y 187 N sing Y 188 N doub N 189 N sing Y 190 N sing N 191 N sing Y 192 N doub N 193 N sing Y 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing Y 215 N sing Y 216 N doub N 217 N sing Y 218 N sing N 219 N sing Y 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing Y 322 N doub Y 323 N sing Y 324 N sing N 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing Y 391 N doub Y 392 N sing Y 393 N sing N 394 N sing Y 395 N doub Y 396 N sing Y 397 N sing N 398 N sing Y 399 N sing Y 400 N doub N 401 N sing Y 402 N doub N 403 N sing Y 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing Y 419 N doub Y 420 N sing Y 421 N sing N 422 N sing Y 423 N doub N 424 N sing Y 425 N doub N 426 N sing Y 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N doub N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing US J.Struct.Biol. JSBIEM 0803 1047-8477 173 14 19 10.1016/j.jsb.2010.09.007 20850545 Structural basis for reversible and irreversible inhibition of human cathepsin L by their respective dipeptidyl glyoxal and diazomethylketone inhibitors. 2011 10.2210/pdb3of9/pdb pdb_00003of9 100 1 CCD 2008-03-28 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 X29A NSLS 1.5418 SYNCHROTRON NSLS BEAMLINE X29A 24320.814 Cathepsin L1 3.4.22.15 Cathepsin L 1 man polymer 542.625 Nalpha-[(benzyloxy)carbonyl]-N-[(1S)-1-(4-tert-butoxybenzyl)-3-diazo-2-oxopropyl]-L-phenylalaninamide 1 syn non-polymer Major excreted protein, MEP, Cathepsin L1 heavy chain, Cathepsin L1 light chain no no EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQD NGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSE DMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQD NGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSE DMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample CTSL1, CTSL 9606 Homo sapiens 4922 Pichia pastoris Plasmid pPIC9 1 2.15 42.85 VAPOR DIFFUSION, HANGING DROP 5.2 30%( w/v) PEG 8K and 200mM Ammonium sulfate, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K 298.0 pdbx_unobs_or_zero_occ_atoms software software struct_conn chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_unobs_or_zero_occ_atoms struct_site repository Initial release Version format compliance Other Advisory Refinement description Data collection Derived calculations Refinement description Advisory Data collection Database references Derived calculations Refinement description 1 0 2010-12-08 1 1 2011-07-13 1 2 2012-12-12 1 3 2017-11-08 1 4 2019-07-17 1 5 2023-09-06 _software.classification _software.contact_author _software.contact_author_email _software.location _software.name _software.type _software.version _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2010-08-14 REL REL I0X Nalpha-[(benzyloxy)carbonyl]-N-[(1S)-1-(4-tert-butoxybenzyl)-3-diazo-2-oxopropyl]-L-phenylalaninamide 1CS8 PDB experimental model Enzyme inhibitor NALPHA-[(BENZYLOXY)CARBONYL]-N-[(1S)-1-(4-TERT-BUTOXYBENZYL)-3-DIAZO-2-OXOPROPYL]-L-PHENYLALANINAMIDE Peptide-like I0X 501 2 I0X I0X 501 A GLU 1 n 1 GLU 1 A ALA 2 n 2 ALA 2 A PRO 3 n 3 PRO 3 A ARG 4 n 4 ARG 4 A SER 5 n 5 SER 5 A VAL 6 n 6 VAL 6 A ASP 7 n 7 ASP 7 A TRP 8 n 8 TRP 8 A ARG 9 n 9 ARG 9 A GLU 10 n 10 GLU 10 A LYS 11 n 11 LYS 11 A GLY 12 n 12 GLY 12 A TYR 13 n 13 TYR 13 A VAL 14 n 14 VAL 14 A THR 15 n 15 THR 15 A PRO 16 n 16 PRO 16 A VAL 17 n 17 VAL 17 A LYS 18 n 18 LYS 18 A ASN 19 n 19 ASN 19 A GLN 20 n 20 GLN 20 A GLY 21 n 21 GLY 21 A GLN 22 n 22 GLN 22 A CYS 23 n 23 CYS 23 A GLY 24 n 24 GLY 24 A SER 25 n 25 SER 25 A CYS 26 n 26 CYS 26 A TRP 27 n 27 TRP 27 A ALA 28 n 28 ALA 28 A PHE 29 n 29 PHE 29 A SER 30 n 30 SER 30 A ALA 31 n 31 ALA 31 A THR 32 n 32 THR 32 A GLY 33 n 33 GLY 33 A ALA 34 n 34 ALA 34 A LEU 35 n 35 LEU 35 A GLU 36 n 36 GLU 36 A GLY 37 n 37 GLY 37 A GLN 38 n 38 GLN 38 A MET 39 n 39 MET 39 A PHE 40 n 40 PHE 40 A ARG 41 n 41 ARG 41 A LYS 42 n 42 LYS 42 A THR 43 n 43 THR 43 A GLY 44 n 44 GLY 44 A ARG 45 n 45 ARG 45 A LEU 46 n 46 LEU 46 A ILE 47 n 47 ILE 47 A SER 48 n 48 SER 48 A LEU 49 n 49 LEU 49 A SER 50 n 50 SER 50 A GLU 51 n 51 GLU 51 A GLN 52 n 52 GLN 52 A ASN 53 n 53 ASN 53 A LEU 54 n 54 LEU 54 A VAL 55 n 55 VAL 55 A ASP 56 n 56 ASP 56 A CYS 57 n 57 CYS 57 A SER 58 n 58 SER 58 A GLY 59 n 59 GLY 59 A PRO 60 n 60 PRO 60 A GLN 61 n 61 GLN 61 A GLY 62 n 62 GLY 62 A ASN 63 n 63 ASN 63 A GLU 64 n 64 GLU 64 A GLY 65 n 65 GLY 65 A CYS 66 n 66 CYS 66 A ASN 67 n 67 ASN 67 A GLY 68 n 68 GLY 68 A GLY 69 n 69 GLY 69 A LEU 70 n 70 LEU 70 A MET 71 n 71 MET 71 A ASP 72 n 72 ASP 72 A TYR 73 n 73 TYR 73 A ALA 74 n 74 ALA 74 A PHE 75 n 75 PHE 75 A GLN 76 n 76 GLN 76 A TYR 77 n 77 TYR 77 A VAL 78 n 78 VAL 78 A GLN 79 n 79 GLN 79 A ASP 80 n 80 ASP 80 A ASN 81 n 81 ASN 81 A GLY 82 n 82 GLY 82 A GLY 83 n 83 GLY 83 A LEU 84 n 84 LEU 84 A ASP 85 n 85 ASP 85 A SER 86 n 86 SER 86 A GLU 87 n 87 GLU 87 A GLU 88 n 88 GLU 88 A SER 89 n 89 SER 89 A TYR 90 n 90 TYR 90 A PRO 91 n 91 PRO 91 A TYR 92 n 92 TYR 92 A GLU 93 n 93 GLU 93 A ALA 94 n 94 ALA 94 A THR 95 n 95 THR 95 A GLU 96 n 96 GLU 96 A GLU 97 n 97 GLU 97 A SER 98 n 98 SER 98 A CYS 99 n 99 CYS 99 A LYS 100 n 100 LYS 100 A TYR 101 n 101 TYR 101 A ASN 102 n 102 ASN 102 A PRO 103 n 103 PRO 103 A LYS 104 n 104 LYS 104 A TYR 105 n 105 TYR 105 A SER 106 n 106 SER 106 A VAL 107 n 107 VAL 107 A ALA 108 n 108 ALA 108 A ASN 109 n 109 ASN 109 A ASP 110 n 110 ASP 110 A THR 111 n 111 THR 111 A GLY 112 n 112 GLY 112 A PHE 113 n 113 PHE 113 A VAL 114 n 114 VAL 114 A ASP 115 n 115 ASP 115 A ILE 116 n 116 ILE 116 A PRO 117 n 117 PRO 117 A LYS 118 n 118 LYS 118 A GLN 119 n 119 GLN 119 A GLU 120 n 120 GLU 120 A LYS 121 n 121 LYS 121 A ALA 122 n 122 ALA 122 A LEU 123 n 123 LEU 123 A MET 124 n 124 MET 124 A LYS 125 n 125 LYS 125 A ALA 126 n 126 ALA 126 A VAL 127 n 127 VAL 127 A ALA 128 n 128 ALA 128 A THR 129 n 129 THR 129 A VAL 130 n 130 VAL 130 A GLY 131 n 131 GLY 131 A PRO 132 n 132 PRO 132 A ILE 133 n 133 ILE 133 A SER 134 n 134 SER 134 A VAL 135 n 135 VAL 135 A ALA 136 n 136 ALA 136 A ILE 137 n 137 ILE 137 A ASP 138 n 138 ASP 138 A ALA 139 n 139 ALA 139 A GLY 140 n 140 GLY 140 A HIS 141 n 141 HIS 141 A GLU 142 n 142 GLU 142 A SER 143 n 143 SER 143 A PHE 144 n 144 PHE 144 A LEU 145 n 145 LEU 145 A PHE 146 n 146 PHE 146 A TYR 147 n 147 TYR 147 A LYS 148 n 148 LYS 148 A GLU 149 n 149 GLU 149 A GLY 150 n 150 GLY 150 A ILE 151 n 151 ILE 151 A TYR 152 n 152 TYR 152 A PHE 153 n 153 PHE 153 A GLU 154 n 154 GLU 154 A PRO 155 n 155 PRO 155 A ASP 156 n 156 ASP 156 A CYS 157 n 157 CYS 157 A SER 158 n 158 SER 158 A SER 159 n 159 SER 159 A GLU 160 n 160 GLU 160 A ASP 161 n 161 ASP 161 A MET 162 n 162 MET 162 A ASP 163 n 163 ASP 163 A HIS 164 n 164 HIS 164 A GLY 165 n 165 GLY 165 A VAL 166 n 166 VAL 166 A LEU 167 n 167 LEU 167 A VAL 168 n 168 VAL 168 A VAL 169 n 169 VAL 169 A GLY 170 n 170 GLY 170 A TYR 171 n 171 TYR 171 A GLY 172 n 172 GLY 172 A PHE 173 n 173 PHE 173 A GLU 174 n 174 GLU 174 A SER 175 n 175 SER 175 A THR 176 n 176 THR 176 A GLU 177 n 177 GLU 177 A SER 178 n 178 SER 178 A ASP 179 n 179 ASP 179 A ASN 180 n 180 ASN 180 A ASN 181 n 181 ASN 181 A LYS 182 n 182 LYS 182 A TYR 183 n 183 TYR 183 A TRP 184 n 184 TRP 184 A LEU 185 n 185 LEU 185 A VAL 186 n 186 VAL 186 A LYS 187 n 187 LYS 187 A ASN 188 n 188 ASN 188 A SER 189 n 189 SER 189 A TRP 190 n 190 TRP 190 A GLY 191 n 191 GLY 191 A GLU 192 n 192 GLU 192 A GLU 193 n 193 GLU 193 A TRP 194 n 194 TRP 194 A GLY 195 n 195 GLY 195 A MET 196 n 196 MET 196 A GLY 197 n 197 GLY 197 A GLY 198 n 198 GLY 198 A TYR 199 n 199 TYR 199 A VAL 200 n 200 VAL 200 A LYS 201 n 201 LYS 201 A MET 202 n 202 MET 202 A ALA 203 n 203 ALA 203 A LYS 204 n 204 LYS 204 A ASP 205 n 205 ASP 205 A ARG 206 n 206 ARG 206 A ARG 207 n 207 ARG 207 A ASN 208 n 208 ASN 208 A HIS 209 n 209 HIS 209 A CYS 210 n 210 CYS 210 A GLY 211 n 211 GLY 211 A ILE 212 n 212 ILE 212 A ALA 213 n 213 ALA 213 A SER 214 n 214 SER 214 A ALA 215 n 215 ALA 215 A ALA 216 n 216 ALA 216 A SER 217 n 217 SER 217 A TYR 218 n 218 TYR 218 A PRO 219 n 219 PRO 219 A THR 220 n 220 THR 220 A VAL 221 n 221 VAL 221 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 6 A N VAL 6 A O TYR 171 A O TYR 171 A O VAL 168 A O VAL 168 A N ILE 133 A N ILE 133 A N VAL 6 A N VAL 6 A O TYR 171 A O TYR 171 A N LEU 167 A N LEU 167 A O LYS 187 A O LYS 187 A N TRP 184 A N TRP 184 A O MET 202 A O MET 202 A O LYS 201 A O LYS 201 A N TYR 152 A N TYR 152 A N LEU 84 A N LEU 84 A O VAL 107 A O VAL 107 A N VAL 114 A N VAL 114 A O TYR 218 A O TYR 218 1 A O GLU 1 A O GLU 1 0 Y 1 A OD1 ASN 109 A OD1 ASN 109 0 Y 1 A CD GLN 119 A CD GLN 119 0 Y 1 A CA GLU 177 A CA GLU 177 0 Y 1 A CG GLU 177 A CG GLU 177 0 Y 1 A ALA 2 68.00 162.27 1 A LYS 148 -131.51 -49.41 1 A THR 176 -54.15 -93.11 1 A SER 178 -169.47 102.90 1 A ASP 179 160.80 -48.20 1 A ARG 206 -119.97 57.11 1 A ALA 215 -140.84 55.02 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:water_rep.param inh3.par 0.0211 -0.0000 0.0000 0.0211 -0.0000 -0.0422 0.2494 0.2244 0.2268 1.761 29.809 1930 20017 9.64 95.83 1.000 0.500 0.23 1 0.12 MOLECULAR REPLACEMENT 23.43 0.90 1.11 1CS8 ML FLAT BULK SOLVENT MODEL 34.709 0.434 1.761 29.809 0 1744 38 0 1706 0.007 1792 1.118 2419 18.154 647 0.074 238 0.005 322 0.2937 0.2374 1.8048 122 1056 78.00 0.2587 0.1991 1.8536 129 1190 91.00 0.2172 0.1953 1.9081 132 1275 93.00 0.2305 0.1925 1.9697 134 1258 95.00 0.2524 0.1992 2.0401 141 1301 97.00 0.2714 0.2154 2.1217 136 1286 96.00 0.2391 0.2136 2.2183 143 1309 98.00 0.2408 0.2187 2.3352 137 1319 98.00 0.2584 0.2283 2.4814 143 1335 99.00 0.2487 0.2448 2.6729 140 1331 98.00 0.2601 0.2305 2.9417 145 1336 99.00 0.2844 0.2368 3.3668 141 1338 100.00 0.2195 0.2096 4.2399 145 1366 100.00 0.2402 0.2360 29.8132 142 1387 99.00 1.7 50 3OF9 22014 1.0 1.0 1 95 refinement PHENIX 1.6_289 data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns-online.org/ CNS package data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data collection CBASS data reduction HKL-2000 data scaling HKL-2000 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package Structural Basis for Irreversible Inhibition of Human Cathepsin L by a Diazomethylketone Inhibitor 1 N N 2 N N A ARG 9 A ARG 9 HELX_P A GLY 12 A GLY 12 5 1 4 A SER 25 A SER 25 HELX_P A GLY 44 A GLY 44 1 2 20 A SER 50 A SER 50 HELX_P A SER 58 A SER 58 1 3 9 A GLY 59 A GLY 59 HELX_P A GLY 62 A GLY 62 5 4 4 A GLU 64 A GLU 64 HELX_P A GLY 68 A GLY 68 5 5 5 A LEU 70 A LEU 70 HELX_P A GLY 82 A GLY 82 1 6 13 A ASN 102 A ASN 102 HELX_P A LYS 104 A LYS 104 5 7 3 A GLN 119 A GLN 119 HELX_P A VAL 130 A VAL 130 1 8 12 A HIS 141 A HIS 141 HELX_P A PHE 146 A PHE 146 1 9 6 A ASN 208 A ASN 208 HELX_P A ILE 212 A ILE 212 5 10 5 disulf 2.046 A CYS 23 A SG CYS 23 1_555 A CYS 66 A SG CYS 66 1_555 disulf 2.039 A CYS 57 A SG CYS 57 1_555 A CYS 99 A SG CYS 99 1_555 disulf 2.041 A CYS 157 A SG CYS 157 1_555 A CYS 210 A SG CYS 210 1_555 covale 1.794 one A CYS 26 A SG CYS 26 1_555 A I0X 501 B C31 I0X 1_555 HYDROLASE/HYDROLASE INHIBITOR HYDROLASE-HYDROLASE INHIBITOR complex CATL1_HUMAN UNP 1 113 P07711 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQD NGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSE DMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 113 333 3OF9 1 221 P07711 A 1 1 221 3 5 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A VAL 6 A VAL 6 A ASP 7 A ASP 7 A HIS 164 A HIS 164 A PHE 173 A PHE 173 A ILE 133 A ILE 133 A ILE 137 A ILE 137 A VAL 6 A VAL 6 A ASP 7 A ASP 7 A HIS 164 A HIS 164 A PHE 173 A PHE 173 A LYS 182 A LYS 182 A LYS 187 A LYS 187 A TYR 199 A TYR 199 A ALA 203 A ALA 203 A ILE 151 A ILE 151 A TYR 152 A TYR 152 A LEU 84 A LEU 84 A ASP 85 A ASP 85 A SER 106 A SER 106 A ALA 108 A ALA 108 A PHE 113 A PHE 113 A ASP 115 A ASP 115 A SER 217 A SER 217 A PRO 219 A PRO 219 BINDING SITE FOR RESIDUE I0X A 501 A I0X 501 Software 21 A ARG 9 A ARG 9 21 5_555 A GLU 10 A GLU 10 21 5_555 A GLY 12 A GLY 12 21 5_555 A GLN 20 A GLN 20 21 1_555 A GLY 24 A GLY 24 21 1_555 A SER 25 A SER 25 21 1_555 A CYS 26 A CYS 26 21 1_555 A TRP 27 A TRP 27 21 1_555 A GLY 62 A GLY 62 21 1_555 A GLU 64 A GLU 64 21 1_555 A GLY 68 A GLY 68 21 1_555 A GLY 69 A GLY 69 21 1_555 A LEU 70 A LEU 70 21 1_555 A MET 71 A MET 71 21 1_555 A ALA 136 A ALA 136 21 1_555 A ALA 139 A ALA 139 21 1_555 A MET 162 A MET 162 21 1_555 A ASP 163 A ASP 163 21 1_555 A HIS 164 A HIS 164 21 1_555 A TRP 190 A TRP 190 21 1_555 A GLU 192 A GLU 192 21 5_555 170 P 65