0.008439
0.004872
0.000000
0.000000
0.009745
0.000000
0.000000
0.000000
0.014287
0.00000
0.00000
0.00000
Gatzeva-Topalova, P.Z.
Warner, L.R.
Pardi, A.
Sousa, M.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
118.492
118.492
69.992
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
18
1492
1501
10.1016/j.str.2010.08.012
21070948
Structure and Flexibility of the Complete Periplasmic Domain of BamA: The Protein Insertion Machine of the Outer Membrane
2010
100
1
CCD
2008-10-23
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.9791
1.0
8.2.2
ALS
0.9791
SYNCHROTRON
ALS BEAMLINE 8.2.2
18936.482
Outer membrane protein assembly complex, YaeT protein
POTRA45 DOMAIN (unp residues 264-424)
2
man
polymer
18.015
water
50
nat
water
no
yes
GA(MSE)DQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTK(MSE)EDDIKKLLGRYGYAYPRVQS(MSE)PEI
NDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRRE(MSE)RQ(MSE)EGAWLGSDLVDQGKERLNRLGFFETVDT
DTQRVPGSPDQVDVVYKVKERNTGPG
GAMDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVN
VDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKE
RNTGPG
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K12
sample
yaeT
83333
Escherichia coli
562
Escherichia coli
Rosetta DE3
plasmid
pMS487
1
3.75
67.16
VAPOR DIFFUSION, HANGING DROP
7.5
0.1M HEPES pH 7.5, 1.68M ammonium sulfate, 3% PEG 400, 0.25M NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 289K
289
repository
Initial release
Version format compliance
1
0
2010-11-17
1
1
2011-07-13
RCSB
Y
RCSB
2010-08-16
REL
REL
HOH
water
HOH
1
2
HOH
HOH
1
A
HOH
2
2
HOH
HOH
2
A
HOH
3
2
HOH
HOH
3
A
HOH
4
2
HOH
HOH
4
A
HOH
5
2
HOH
HOH
5
A
HOH
6
2
HOH
HOH
6
A
HOH
7
2
HOH
HOH
7
A
HOH
8
2
HOH
HOH
8
A
HOH
9
2
HOH
HOH
9
A
HOH
10
2
HOH
HOH
10
A
HOH
11
2
HOH
HOH
11
A
HOH
12
2
HOH
HOH
12
A
HOH
13
2
HOH
HOH
13
A
HOH
14
2
HOH
HOH
14
A
HOH
15
2
HOH
HOH
15
A
HOH
16
2
HOH
HOH
16
A
HOH
17
2
HOH
HOH
17
A
HOH
18
2
HOH
HOH
18
A
HOH
19
2
HOH
HOH
19
A
HOH
20
2
HOH
HOH
20
A
HOH
21
2
HOH
HOH
21
A
HOH
22
2
HOH
HOH
22
A
HOH
23
2
HOH
HOH
23
A
HOH
24
2
HOH
HOH
24
A
HOH
25
2
HOH
HOH
25
A
HOH
26
2
HOH
HOH
26
A
HOH
27
2
HOH
HOH
27
A
HOH
28
2
HOH
HOH
28
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
33
2
HOH
HOH
33
A
HOH
34
2
HOH
HOH
34
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
38
2
HOH
HOH
38
A
HOH
39
2
HOH
HOH
39
A
HOH
1
2
HOH
HOH
1
B
HOH
2
2
HOH
HOH
2
B
HOH
3
2
HOH
HOH
3
B
HOH
4
2
HOH
HOH
4
B
HOH
5
2
HOH
HOH
5
B
HOH
6
2
HOH
HOH
6
B
HOH
7
2
HOH
HOH
7
B
HOH
8
2
HOH
HOH
8
B
HOH
9
2
HOH
HOH
9
B
HOH
10
2
HOH
HOH
10
B
HOH
11
2
HOH
HOH
11
B
n
1
261
A
ALA
262
n
2
ALA
262
A
MSE
263
n
3
MSE
263
A
ASP
264
n
4
ASP
264
A
GLN
265
n
5
GLN
265
A
TYR
266
n
6
TYR
266
A
LYS
267
n
7
LYS
267
A
LEU
268
n
8
LEU
268
A
SER
269
n
9
SER
269
A
GLY
270
n
10
GLY
270
A
VAL
271
n
11
VAL
271
A
GLU
272
n
12
GLU
272
A
VAL
273
n
13
VAL
273
A
SER
274
n
14
SER
274
A
GLY
275
n
15
GLY
275
A
ASN
276
n
16
ASN
276
A
LEU
277
n
17
LEU
277
A
ALA
278
n
18
ALA
278
A
GLY
279
n
19
GLY
279
A
HIS
280
n
20
HIS
280
A
SER
281
n
21
SER
281
A
ALA
282
n
22
ALA
282
A
GLU
283
n
23
GLU
283
A
ILE
284
n
24
ILE
284
A
GLU
285
n
25
GLU
285
A
GLN
286
n
26
GLN
286
A
LEU
287
n
27
LEU
287
A
THR
288
n
28
THR
288
A
LYS
289
n
29
LYS
289
A
ILE
290
n
30
ILE
290
A
GLU
291
n
31
GLU
291
A
PRO
292
n
32
PRO
292
A
GLY
293
n
33
GLY
293
A
GLU
294
n
34
GLU
294
A
LEU
295
n
35
LEU
295
A
TYR
296
n
36
TYR
296
A
ASN
297
n
37
ASN
297
A
GLY
298
n
38
GLY
298
A
THR
299
n
39
THR
299
A
LYS
300
n
40
LYS
300
A
VAL
301
n
41
VAL
301
A
THR
302
n
42
THR
302
A
LYS
303
n
43
LYS
303
A
MSE
304
n
44
MSE
304
A
GLU
305
n
45
GLU
305
A
ASP
306
n
46
ASP
306
A
ASP
307
n
47
ASP
307
A
ILE
308
n
48
ILE
308
A
LYS
309
n
49
LYS
309
A
LYS
310
n
50
LYS
310
A
LEU
311
n
51
LEU
311
A
LEU
312
n
52
LEU
312
A
GLY
313
n
53
GLY
313
A
ARG
314
n
54
ARG
314
A
TYR
315
n
55
TYR
315
A
GLY
316
n
56
GLY
316
A
TYR
317
n
57
TYR
317
A
ALA
318
n
58
ALA
318
A
TYR
319
n
59
TYR
319
A
PRO
320
n
60
PRO
320
A
ARG
321
n
61
ARG
321
A
VAL
322
n
62
VAL
322
A
GLN
323
n
63
GLN
323
A
SER
324
n
64
SER
324
A
MSE
325
n
65
MSE
325
A
PRO
326
n
66
PRO
326
A
GLU
327
n
67
GLU
327
A
ILE
328
n
68
ILE
328
A
ASN
329
n
69
ASN
329
A
ASP
330
n
70
ASP
330
A
ALA
331
n
71
ALA
331
A
ASP
332
n
72
ASP
332
A
LYS
333
n
73
LYS
333
A
THR
334
n
74
THR
334
A
VAL
335
n
75
VAL
335
A
LYS
336
n
76
LYS
336
A
LEU
337
n
77
LEU
337
A
ARG
338
n
78
ARG
338
A
VAL
339
n
79
VAL
339
A
ASN
340
n
80
ASN
340
A
VAL
341
n
81
VAL
341
A
ASP
342
n
82
ASP
342
A
ALA
343
n
83
ALA
343
A
GLY
344
n
84
GLY
344
A
ASN
345
n
85
ASN
345
A
ARG
346
n
86
ARG
346
A
PHE
347
n
87
PHE
347
A
TYR
348
n
88
TYR
348
A
VAL
349
n
89
VAL
349
A
ARG
350
n
90
ARG
350
A
LYS
351
n
91
LYS
351
A
ILE
352
n
92
ILE
352
A
ARG
353
n
93
ARG
353
A
PHE
354
n
94
PHE
354
A
GLU
355
n
95
GLU
355
A
GLY
356
n
96
GLY
356
A
ASN
357
n
97
ASN
357
A
ASP
358
n
98
ASP
358
A
THR
359
n
99
THR
359
A
SER
360
n
100
SER
360
A
LYS
361
n
101
LYS
361
A
ASP
362
n
102
ASP
362
A
ALA
363
n
103
ALA
363
A
VAL
364
n
104
VAL
364
A
LEU
365
n
105
LEU
365
A
ARG
366
n
106
ARG
366
A
ARG
367
n
107
ARG
367
A
GLU
368
n
108
GLU
368
A
MSE
369
n
109
MSE
369
A
ARG
370
n
110
ARG
370
A
GLN
371
n
111
GLN
371
A
MSE
372
n
112
MSE
372
A
GLU
373
n
113
GLU
373
A
GLY
374
n
114
GLY
374
A
ALA
375
n
115
ALA
375
A
TRP
376
n
116
TRP
376
A
LEU
377
n
117
LEU
377
A
GLY
378
n
118
GLY
378
A
SER
379
n
119
SER
379
A
ASP
380
n
120
ASP
380
A
LEU
381
n
121
LEU
381
A
VAL
382
n
122
VAL
382
A
ASP
383
n
123
ASP
383
A
GLN
384
n
124
GLN
384
A
GLY
385
n
125
GLY
385
A
LYS
386
n
126
LYS
386
A
GLU
387
n
127
GLU
387
A
ARG
388
n
128
ARG
388
A
LEU
389
n
129
LEU
389
A
ASN
390
n
130
ASN
390
A
ARG
391
n
131
ARG
391
A
LEU
392
n
132
LEU
392
A
GLY
393
n
133
GLY
393
A
PHE
394
n
134
PHE
394
A
PHE
395
n
135
PHE
395
A
GLU
396
n
136
GLU
396
A
THR
397
n
137
THR
397
A
VAL
398
n
138
VAL
398
A
ASP
399
n
139
ASP
399
A
THR
400
n
140
THR
400
A
ASP
401
n
141
ASP
401
A
THR
402
n
142
THR
402
A
GLN
403
n
143
GLN
403
A
ARG
404
n
144
ARG
404
A
VAL
405
n
145
VAL
405
A
PRO
406
n
146
PRO
406
A
GLY
407
n
147
GLY
407
A
SER
408
n
148
SER
408
A
PRO
409
n
149
PRO
409
A
ASP
410
n
150
ASP
410
A
GLN
411
n
151
GLN
411
A
VAL
412
n
152
VAL
412
A
ASP
413
n
153
ASP
413
A
VAL
414
n
154
VAL
414
A
VAL
415
n
155
VAL
415
A
TYR
416
n
156
TYR
416
A
LYS
417
n
157
LYS
417
A
VAL
418
n
158
VAL
418
A
LYS
419
n
159
LYS
419
A
GLU
420
n
160
GLU
420
A
ARG
421
n
161
ARG
421
A
n
162
422
A
n
163
423
A
n
164
424
A
n
165
425
A
n
166
426
A
n
1
261
B
n
2
262
B
n
3
263
B
ASP
264
n
4
ASP
264
B
GLN
265
n
5
GLN
265
B
TYR
266
n
6
TYR
266
B
LYS
267
n
7
LYS
267
B
LEU
268
n
8
LEU
268
B
SER
269
n
9
SER
269
B
n
10
270
B
n
11
271
B
GLU
272
n
12
GLU
272
B
VAL
273
n
13
VAL
273
B
SER
274
n
14
SER
274
B
GLY
275
n
15
GLY
275
B
ASN
276
n
16
ASN
276
B
LEU
277
n
17
LEU
277
B
ALA
278
n
18
ALA
278
B
GLY
279
n
19
GLY
279
B
HIS
280
n
20
HIS
280
B
SER
281
n
21
SER
281
B
ALA
282
n
22
ALA
282
B
GLU
283
n
23
GLU
283
B
ILE
284
n
24
ILE
284
B
GLU
285
n
25
GLU
285
B
GLN
286
n
26
GLN
286
B
LEU
287
n
27
LEU
287
B
THR
288
n
28
THR
288
B
LYS
289
n
29
LYS
289
B
n
30
290
B
n
31
291
B
n
32
292
B
n
33
293
B
GLU
294
n
34
GLU
294
B
LEU
295
n
35
LEU
295
B
TYR
296
n
36
TYR
296
B
ASN
297
n
37
ASN
297
B
GLY
298
n
38
GLY
298
B
THR
299
n
39
THR
299
B
LYS
300
n
40
LYS
300
B
VAL
301
n
41
VAL
301
B
THR
302
n
42
THR
302
B
LYS
303
n
43
LYS
303
B
MSE
304
n
44
MSE
304
B
GLU
305
n
45
GLU
305
B
ASP
306
n
46
ASP
306
B
ASP
307
n
47
ASP
307
B
ILE
308
n
48
ILE
308
B
LYS
309
n
49
LYS
309
B
LYS
310
n
50
LYS
310
B
LEU
311
n
51
LEU
311
B
LEU
312
n
52
LEU
312
B
GLY
313
n
53
GLY
313
B
ARG
314
n
54
ARG
314
B
TYR
315
n
55
TYR
315
B
GLY
316
n
56
GLY
316
B
TYR
317
n
57
TYR
317
B
ALA
318
n
58
ALA
318
B
TYR
319
n
59
TYR
319
B
PRO
320
n
60
PRO
320
B
ARG
321
n
61
ARG
321
B
VAL
322
n
62
VAL
322
B
GLN
323
n
63
GLN
323
B
SER
324
n
64
SER
324
B
MSE
325
n
65
MSE
325
B
n
66
326
B
n
67
327
B
n
68
328
B
n
69
329
B
n
70
330
B
n
71
331
B
n
72
332
B
n
73
333
B
n
74
334
B
n
75
335
B
LYS
336
n
76
LYS
336
B
LEU
337
n
77
LEU
337
B
ARG
338
n
78
ARG
338
B
VAL
339
n
79
VAL
339
B
ASN
340
n
80
ASN
340
B
VAL
341
n
81
VAL
341
B
ASP
342
n
82
ASP
342
B
ALA
343
n
83
ALA
343
B
GLY
344
n
84
GLY
344
B
ASN
345
n
85
ASN
345
B
ARG
346
n
86
ARG
346
B
PHE
347
n
87
PHE
347
B
TYR
348
n
88
TYR
348
B
VAL
349
n
89
VAL
349
B
ARG
350
n
90
ARG
350
B
LYS
351
n
91
LYS
351
B
ILE
352
n
92
ILE
352
B
ARG
353
n
93
ARG
353
B
PHE
354
n
94
PHE
354
B
GLU
355
n
95
GLU
355
B
GLY
356
n
96
GLY
356
B
ASN
357
n
97
ASN
357
B
n
98
358
B
n
99
359
B
n
100
360
B
n
101
361
B
n
102
362
B
ALA
363
n
103
ALA
363
B
VAL
364
n
104
VAL
364
B
LEU
365
n
105
LEU
365
B
ARG
366
n
106
ARG
366
B
ARG
367
n
107
ARG
367
B
GLU
368
n
108
GLU
368
B
MSE
369
n
109
MSE
369
B
ARG
370
n
110
ARG
370
B
GLN
371
n
111
GLN
371
B
MSE
372
n
112
MSE
372
B
GLU
373
n
113
GLU
373
B
GLY
374
n
114
GLY
374
B
ALA
375
n
115
ALA
375
B
TRP
376
n
116
TRP
376
B
LEU
377
n
117
LEU
377
B
GLY
378
n
118
GLY
378
B
SER
379
n
119
SER
379
B
ASP
380
n
120
ASP
380
B
LEU
381
n
121
LEU
381
B
VAL
382
n
122
VAL
382
B
ASP
383
n
123
ASP
383
B
GLN
384
n
124
GLN
384
B
GLY
385
n
125
GLY
385
B
LYS
386
n
126
LYS
386
B
GLU
387
n
127
GLU
387
B
ARG
388
n
128
ARG
388
B
LEU
389
n
129
LEU
389
B
ASN
390
n
130
ASN
390
B
ARG
391
n
131
ARG
391
B
LEU
392
n
132
LEU
392
B
GLY
393
n
133
GLY
393
B
PHE
394
n
134
PHE
394
B
PHE
395
n
135
PHE
395
B
GLU
396
n
136
GLU
396
B
THR
397
n
137
THR
397
B
VAL
398
n
138
VAL
398
B
ASP
399
n
139
ASP
399
B
THR
400
n
140
THR
400
B
ASP
401
n
141
ASP
401
B
THR
402
n
142
THR
402
B
GLN
403
n
143
GLN
403
B
ARG
404
n
144
ARG
404
B
VAL
405
n
145
VAL
405
B
PRO
406
n
146
PRO
406
B
GLY
407
n
147
GLY
407
B
SER
408
n
148
SER
408
B
PRO
409
n
149
PRO
409
B
ASP
410
n
150
ASP
410
B
GLN
411
n
151
GLN
411
B
VAL
412
n
152
VAL
412
B
ASP
413
n
153
ASP
413
B
VAL
414
n
154
VAL
414
B
VAL
415
n
155
VAL
415
B
TYR
416
n
156
TYR
416
B
LYS
417
n
157
LYS
417
B
VAL
418
n
158
VAL
418
B
LYS
419
n
159
LYS
419
B
GLU
420
n
160
GLU
420
B
n
161
421
B
n
162
422
B
n
163
423
B
n
164
424
B
n
165
425
B
n
166
426
B
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
263
SELENOMETHIONINE
A
MSE
3
MET
A
MSE
304
SELENOMETHIONINE
A
MSE
44
MET
A
MSE
325
SELENOMETHIONINE
A
MSE
65
MET
A
MSE
369
SELENOMETHIONINE
A
MSE
109
MET
A
MSE
372
SELENOMETHIONINE
A
MSE
112
MET
B
MSE
304
SELENOMETHIONINE
B
MSE
44
MET
B
MSE
325
SELENOMETHIONINE
B
MSE
65
MET
B
MSE
369
SELENOMETHIONINE
B
MSE
109
MET
B
MSE
372
SELENOMETHIONINE
B
MSE
112
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
272
A
N
GLU
12
A
O
VAL
339
A
O
VAL
79
A
O
ARG
338
A
O
ARG
78
A
N
MSE
325
A
N
MSE
65
A
N
ARG
350
A
N
ARG
90
A
O
VAL
412
A
O
VAL
152
A
O
LYS
419
A
O
LYS
159
A
N
GLU
396
A
N
GLU
136
B
N
SER
274
B
N
SER
14
B
O
VAL
341
B
O
VAL
81
B
O
ARG
338
B
O
ARG
78
B
N
MSE
325
B
N
MSE
65
B
N
ARG
353
B
N
ARG
93
B
O
TYR
416
B
O
TYR
156
B
O
ASP
413
B
O
ASP
153
B
N
GLN
403
B
N
GLN
143
1
A
CG
GLU
285
A
CG
GLU
25
1
Y
1
A
CD
GLU
285
A
CD
GLU
25
1
Y
1
A
OE1
GLU
285
A
OE1
GLU
25
1
Y
1
A
OE2
GLU
285
A
OE2
GLU
25
1
Y
1
A
CG
LYS
300
A
CG
LYS
40
1
Y
1
A
CD
LYS
300
A
CD
LYS
40
1
Y
1
A
CE
LYS
300
A
CE
LYS
40
1
Y
1
A
NZ
LYS
300
A
NZ
LYS
40
1
Y
1
A
CG
LYS
417
A
CG
LYS
157
1
Y
1
A
CD
LYS
417
A
CD
LYS
157
1
Y
1
A
CE
LYS
417
A
CE
LYS
157
1
Y
1
A
NZ
LYS
417
A
NZ
LYS
157
1
Y
1
A
CG
LYS
419
A
CG
LYS
159
1
Y
1
A
CD
LYS
419
A
CD
LYS
159
1
Y
1
A
CE
LYS
419
A
CE
LYS
159
1
Y
1
A
NZ
LYS
419
A
NZ
LYS
159
1
Y
1
B
CG
LYS
267
B
CG
LYS
7
1
Y
1
B
CD
LYS
267
B
CD
LYS
7
1
Y
1
B
CE
LYS
267
B
CE
LYS
7
1
Y
1
B
NZ
LYS
267
B
NZ
LYS
7
1
Y
1
B
CG
GLU
272
B
CG
GLU
12
1
Y
1
B
CD
GLU
272
B
CD
GLU
12
1
Y
1
B
OE1
GLU
272
B
OE1
GLU
12
1
Y
1
B
OE2
GLU
272
B
OE2
GLU
12
1
Y
1
B
CG
LYS
289
B
CG
LYS
29
1
Y
1
B
CD
LYS
289
B
CD
LYS
29
1
Y
1
B
CE
LYS
289
B
CE
LYS
29
1
Y
1
B
NZ
LYS
289
B
NZ
LYS
29
1
Y
1
B
CG
GLU
294
B
CG
GLU
34
1
Y
1
B
CD
GLU
294
B
CD
GLU
34
1
Y
1
B
OE1
GLU
294
B
OE1
GLU
34
1
Y
1
B
OE2
GLU
294
B
OE2
GLU
34
1
Y
1
B
CG
LYS
300
B
CG
LYS
40
1
Y
1
B
CD
LYS
300
B
CD
LYS
40
1
Y
1
B
CE
LYS
300
B
CE
LYS
40
1
Y
1
B
NZ
LYS
300
B
NZ
LYS
40
1
Y
1
B
CG
ARG
338
B
CG
ARG
78
1
Y
1
B
CD
ARG
338
B
CD
ARG
78
1
Y
1
B
NE
ARG
338
B
NE
ARG
78
1
Y
1
B
CZ
ARG
338
B
CZ
ARG
78
1
Y
1
B
NH1
ARG
338
B
NH1
ARG
78
1
Y
1
B
NH2
ARG
338
B
NH2
ARG
78
1
Y
1
B
CG
ARG
353
B
CG
ARG
93
1
Y
1
B
CD
ARG
353
B
CD
ARG
93
1
Y
1
B
NE
ARG
353
B
NE
ARG
93
1
Y
1
B
CZ
ARG
353
B
CZ
ARG
93
1
Y
1
B
NH1
ARG
353
B
NH1
ARG
93
1
Y
1
B
NH2
ARG
353
B
NH2
ARG
93
1
Y
1
B
CG
ARG
367
B
CG
ARG
107
1
Y
1
B
CD
ARG
367
B
CD
ARG
107
1
Y
1
B
NE
ARG
367
B
NE
ARG
107
1
Y
1
B
CZ
ARG
367
B
CZ
ARG
107
1
Y
1
B
NH1
ARG
367
B
NH1
ARG
107
1
Y
1
B
NH2
ARG
367
B
NH2
ARG
107
1
Y
1
B
CG
GLU
387
B
CG
GLU
127
1
Y
1
B
CD
GLU
387
B
CD
GLU
127
1
Y
1
B
OE1
GLU
387
B
OE1
GLU
127
1
Y
1
B
OE2
GLU
387
B
OE2
GLU
127
1
Y
1
B
CG
ARG
391
B
CG
ARG
131
1
Y
1
B
CD
ARG
391
B
CD
ARG
131
1
Y
1
B
NE
ARG
391
B
NE
ARG
131
1
Y
1
B
CZ
ARG
391
B
CZ
ARG
131
1
Y
1
B
NH1
ARG
391
B
NH1
ARG
131
1
Y
1
B
NH2
ARG
391
B
NH2
ARG
131
1
Y
1
B
CG
GLU
396
B
CG
GLU
136
1
Y
1
B
CD
GLU
396
B
CD
GLU
136
1
Y
1
B
OE1
GLU
396
B
OE1
GLU
136
1
Y
1
B
OE2
GLU
396
B
OE2
GLU
136
1
Y
1
B
CG
LYS
419
B
CG
LYS
159
1
Y
1
B
CD
LYS
419
B
CD
LYS
159
1
Y
1
B
CE
LYS
419
B
CE
LYS
159
1
Y
1
B
NZ
LYS
419
B
NZ
LYS
159
1
Y
1
B
CG
GLU
420
B
CG
GLU
160
1
Y
1
B
CD
GLU
420
B
CD
GLU
160
1
Y
1
B
OE1
GLU
420
B
OE1
GLU
160
1
Y
1
B
OE2
GLU
420
B
OE2
GLU
160
1
Y
1
A
GLY
261
A
GLY
1
1
Y
1
A
ASN
422
A
ASN
162
1
Y
1
A
THR
423
A
THR
163
1
Y
1
A
GLY
424
A
GLY
164
1
Y
1
A
PRO
425
A
PRO
165
1
Y
1
A
GLY
426
A
GLY
166
1
Y
1
B
GLY
261
B
GLY
1
1
Y
1
B
ALA
262
B
ALA
2
1
Y
1
B
MSE
263
B
MSE
3
1
Y
1
B
GLY
270
B
GLY
10
1
Y
1
B
VAL
271
B
VAL
11
1
Y
1
B
ILE
290
B
ILE
30
1
Y
1
B
GLU
291
B
GLU
31
1
Y
1
B
PRO
292
B
PRO
32
1
Y
1
B
GLY
293
B
GLY
33
1
Y
1
B
PRO
326
B
PRO
66
1
Y
1
B
GLU
327
B
GLU
67
1
Y
1
B
ILE
328
B
ILE
68
1
Y
1
B
ASN
329
B
ASN
69
1
Y
1
B
ASP
330
B
ASP
70
1
Y
1
B
ALA
331
B
ALA
71
1
Y
1
B
ASP
332
B
ASP
72
1
Y
1
B
LYS
333
B
LYS
73
1
Y
1
B
THR
334
B
THR
74
1
Y
1
B
VAL
335
B
VAL
75
1
Y
1
B
ASP
358
B
ASP
98
1
Y
1
B
THR
359
B
THR
99
1
Y
1
B
SER
360
B
SER
100
1
Y
1
B
LYS
361
B
LYS
101
1
Y
1
B
ASP
362
B
ASP
102
1
Y
1
B
ARG
421
B
ARG
161
1
Y
1
B
ASN
422
B
ASN
162
1
Y
1
B
THR
423
B
THR
163
1
Y
1
B
GLY
424
B
GLY
164
1
Y
1
B
PRO
425
B
PRO
165
1
Y
1
B
GLY
426
B
GLY
166
1
Y
1
B
B
O
O
VAL
GLU
349
373
2.11
1
10.59
1.50
119.30
129.89
B
B
B
C
N
CA
SER
PRO
PRO
408
409
409
Y
1
A
ASP
410
-143.22
11.85
1
B
GLN
265
-174.19
133.14
1
B
ARG
350
-70.33
-74.96
1
B
GLU
387
-68.81
3.95
1
B
ARG
391
-69.06
17.82
218.240
42.8419
2.620
8.3412
-0.0000
-0.0000
8.3412
0.0000
-12.9726
0.2603
0.2115
0.2163
2.69
38.7860
2828
28390
9.9600
93.5100
1.000
1.000
0.8206
0.4000
1
0.080
SAD
25.21
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
27.3740
0.3330
2.69
38.7860
50
2351
0
0
2301
0.009
2333
1.204
3143
0.072
346
0.005
416
18.743
873
0.2872
0.2658
2.7906
262
2359
2621
10
87.0000
0.3370
0.2547
2.9023
269
2487
2756
10
90.0000
0.3177
0.2416
3.0344
280
2506
2786
10
92.0000
0.2711
0.2112
3.1943
282
2549
2831
10
93.0000
0.2533
0.2076
3.3943
295
2597
2892
10
95.0000
0.2424
0.1923
3.6562
292
2617
2909
10
96.0000
0.2128
0.1731
4.0238
280
2627
2907
10
96.0000
0.2257
0.1730
4.6052
288
2638
2926
10
96.0000
0.2383
0.1926
5.7990
295
2553
2848
10
94.0000
0.2826
0.2450
38.7896
285
2629
2914
10
95.0000
2.69
40.000
3OG5
29399
0.084
1.340
1
8.400
1.500
96.800
0.242
2.69
2.800
2918
1.188
1.400
97.300
0.204
2.800
2.910
2972
1.172
1.500
97.500
0.166
2.910
3.040
2967
1.208
1.500
97.800
0.131
3.040
3.200
2968
1.221
1.500
97.200
0.109
3.200
3.400
2957
1.345
1.500
97.800
0.093
3.400
3.660
2955
1.413
1.500
97.000
0.075
3.660
4.030
2934
1.544
1.400
96.700
0.066
4.030
4.620
2945
1.565
1.400
96.300
0.063
4.620
5.810
2856
1.414
1.400
94.900
0.054
5.810
40.000
2927
1.351
1.400
95.500
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
HKL-2000
data reduction
HKL-2000
phasing
MOLREP
phasing
PHENIX
Outer membrane protein assembly complex, YaeT protein
Crystal Structure of BamA POTRA45 tandem
1
N
N
1
N
N
2
N
N
2
N
N
A
HIS
280
A
HIS
20
HELX_P
A
LYS
289
A
LYS
29
1
1
10
A
ASN
297
A
ASN
37
HELX_P
A
ARG
314
A
ARG
54
1
2
18
A
LYS
361
A
LYS
101
HELX_P
A
ARG
367
A
ARG
107
1
3
7
A
GLY
378
A
GLY
118
HELX_P
A
ARG
391
A
ARG
131
1
4
14
B
HIS
280
B
HIS
20
HELX_P
B
THR
288
B
THR
28
1
5
9
B
ASN
297
B
ASN
37
HELX_P
B
GLY
313
B
GLY
53
1
6
17
B
VAL
364
B
VAL
104
HELX_P
B
MSE
369
B
MSE
109
5
7
6
B
GLY
378
B
GLY
118
HELX_P
B
ASN
390
B
ASN
130
1
8
13
covale
1.335
A
ALA
262
A
C
ALA
2
1_555
A
MSE
263
A
N
MSE
3
1_555
covale
1.328
A
MSE
263
A
C
MSE
3
1_555
A
ASP
264
A
N
ASP
4
1_555
covale
1.317
A
LYS
303
A
C
LYS
43
1_555
A
MSE
304
A
N
MSE
44
1_555
covale
1.334
A
MSE
304
A
C
MSE
44
1_555
A
GLU
305
A
N
GLU
45
1_555
covale
1.333
A
SER
324
A
C
SER
64
1_555
A
MSE
325
A
N
MSE
65
1_555
covale
1.339
A
MSE
325
A
C
MSE
65
1_555
A
PRO
326
A
N
PRO
66
1_555
covale
1.334
A
GLU
368
A
C
GLU
108
1_555
A
MSE
369
A
N
MSE
109
1_555
covale
1.323
A
MSE
369
A
C
MSE
109
1_555
A
ARG
370
A
N
ARG
110
1_555
covale
1.329
A
GLN
371
A
C
GLN
111
1_555
A
MSE
372
A
N
MSE
112
1_555
covale
1.336
A
MSE
372
A
C
MSE
112
1_555
A
GLU
373
A
N
GLU
113
1_555
covale
1.329
B
LYS
303
B
C
LYS
43
1_555
B
MSE
304
B
N
MSE
44
1_555
covale
1.330
B
MSE
304
B
C
MSE
44
1_555
B
GLU
305
B
N
GLU
45
1_555
covale
1.335
B
SER
324
B
C
SER
64
1_555
B
MSE
325
B
N
MSE
65
1_555
covale
1.328
B
GLU
368
B
C
GLU
108
1_555
B
MSE
369
B
N
MSE
109
1_555
covale
1.330
B
MSE
369
B
C
MSE
109
1_555
B
ARG
370
B
N
ARG
110
1_555
covale
1.328
B
GLN
371
B
C
GLN
111
1_555
B
MSE
372
B
N
MSE
112
1_555
covale
1.330
B
MSE
372
B
C
MSE
112
1_555
B
GLU
373
B
N
GLU
113
1_555
PROTEIN BINDING
POTRA fold, Insertion of outer membrane proteins, PROTEIN BINDING
D5CVA9_ECOKI
UNP
1
264
D5CVA9
DQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDA
GNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKERNT
G
264
424
3OG5
264
424
D5CVA9
A
1
4
164
264
424
3OG5
264
424
D5CVA9
B
1
4
164
1
EXPRESSION TAG
GLY
261
3OG5
A
D5CVA9
UNP
1
1
EXPRESSION TAG
ALA
262
3OG5
A
D5CVA9
UNP
2
1
EXPRESSION TAG
MSE
263
3OG5
A
D5CVA9
UNP
3
1
EXPRESSION TAG
PRO
425
3OG5
A
D5CVA9
UNP
165
1
EXPRESSION TAG
GLY
426
3OG5
A
D5CVA9
UNP
166
2
EXPRESSION TAG
GLY
261
3OG5
B
D5CVA9
UNP
1
2
EXPRESSION TAG
ALA
262
3OG5
B
D5CVA9
UNP
2
2
EXPRESSION TAG
MSE
263
3OG5
B
D5CVA9
UNP
3
2
EXPRESSION TAG
PRO
425
3OG5
B
D5CVA9
UNP
165
2
EXPRESSION TAG
GLY
426
3OG5
B
D5CVA9
UNP
166
3
3
3
3
parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
A
LYS
267
A
LYS
7
A
ASN
276
A
ASN
16
A
THR
334
A
THR
74
A
ASP
342
A
ASP
82
A
ARG
321
A
ARG
61
A
ASN
329
A
ASN
69
A
TYR
348
A
TYR
88
A
GLU
355
A
GLU
95
A
GLN
411
A
GLN
151
A
GLU
420
A
GLU
160
A
PHE
395
A
PHE
135
A
ARG
404
A
ARG
144
B
VAL
273
B
VAL
13
B
ASN
276
B
ASN
16
B
ARG
338
B
ARG
78
B
ASP
342
B
ASP
82
B
ARG
321
B
ARG
61
B
MSE
325
B
MSE
65
B
TYR
348
B
TYR
88
B
GLU
355
B
GLU
95
B
GLN
411
B
GLN
151
B
LYS
419
B
LYS
159
B
THR
397
B
THR
137
B
ARG
404
B
ARG
144
154
P 32 2 1