0.009742
0.005625
0.000000
0.000000
0.011249
0.000000
0.000000
0.000000
0.008874
0.00000
0.00000
0.00000
Bosanac, I.
Hymowitz, S.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
102.646
102.646
112.686
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
US
Mol.Cell
MOCEFL
2168
1097-2765
40
548
557
10.1016/j.molcel.2010.10.009
21095585
Ubiquitin Binding to A20 ZnF4 Is Required for Modulation of NF-κB Signaling
2010
10.2210/pdb3oj4/pdb
pdb_00003oj4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2006-10-13
ADSC QUANTUM 210
Asymmetric curved crystal
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
5.0.1
ALS
1.0000
SYNCHROTRON
ALS BEAMLINE 5.0.1
17277.756
Ubiquitin-conjugating enzyme E2 D1
6.3.2.19
Ubiquitin-conjugating enzyme E2 D1
2
man
polymer
8859.106
Ubiquitin
Ubiquitin, UNP residues 1-76
2
man
polymer
5418.088
Tumor necrosis factor alpha-induced protein 3
Zinc finger A20-type 4, UNP residues 592-635
2
man
polymer
65.409
ZINC ION
2
syn
non-polymer
Ubiquitin-protein ligase D1, Ubiquitin carrier protein D1, UbcH5, Ubiquitin-conjugating enzyme E2-17 kDa 1, Ubiquitin-conjugating enzyme E2(17)KB 1, UBC4/5 homolog, Stimulator of Fe transport, SFT
TNF alpha-induced protein 3, OTU domain-containing protein 7C, Putative DNA-binding protein A20, Zinc finger protein A20
no
no
GSHMLEMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIY
HPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
GSHMLEMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIY
HPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
A,D
polypeptide(L)
no
no
GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
B,E
polypeptide(L)
no
no
GSPEFSQAARTPGDRTGTSKCRKAGCVYFGTPENKGFCTLCFIEYRENK
GSPEFSQAARTPGDRTGTSKCRKAGCVYFGTPENKGFCTLCFIEYRENK
C,F
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
UBE2D1, SFT, UBC5A, UBCH5, UBCH5A
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3) codon + RIL
plasmid
pET-15b
human
sample
UBB
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3) codon + RIL
plasmid
pET-15b
human
sample
TNFAIP3, OTUD7C
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3) codon + RIL
plasmid
pET-15b
1
2.72
54.70
VAPOR DIFFUSION
7.1
0.1 M HEPES pH 7.1 and 1.85 M Na Malonate pH 7.0, VAPOR DIFFUSION, temperature 292K
292
audit_author
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ncs_dom_lim
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Structure summary
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-12-08
1
1
2011-07-13
1
2
2018-01-24
1
3
2023-09-06
_audit_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_label_asym_id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2010-08-20
REL
REL
ZN
ZINC ION
1UBQ
PDB ENTRY: 1UBQ, 1X23
PDB
experimental model
1X23
PDB ENTRY: 1UBQ, 1X23
PDB
experimental model
ZN
900
4
ZN
ZN
900
C
ZN
900
4
ZN
ZN
900
F
n
1
-5
A
n
2
-4
A
n
3
-3
A
n
4
-2
A
n
5
-1
A
n
6
0
A
MET
1
n
7
MET
1
A
ALA
2
n
8
ALA
2
A
LEU
3
n
9
LEU
3
A
LYS
4
n
10
LYS
4
A
ARG
5
n
11
ARG
5
A
ILE
6
n
12
ILE
6
A
GLN
7
n
13
GLN
7
A
LYS
8
n
14
LYS
8
A
GLU
9
n
15
GLU
9
A
LEU
10
n
16
LEU
10
A
SER
11
n
17
SER
11
A
ASP
12
n
18
ASP
12
A
LEU
13
n
19
LEU
13
A
GLN
14
n
20
GLN
14
A
ARG
15
n
21
ARG
15
A
ASP
16
n
22
ASP
16
A
PRO
17
n
23
PRO
17
A
PRO
18
n
24
PRO
18
A
ALA
19
n
25
ALA
19
A
HIS
20
n
26
HIS
20
A
CYS
21
n
27
CYS
21
A
SER
22
n
28
SER
22
A
ALA
23
n
29
ALA
23
A
GLY
24
n
30
GLY
24
A
PRO
25
n
31
PRO
25
A
VAL
26
n
32
VAL
26
A
GLY
27
n
33
GLY
27
A
ASP
28
n
34
ASP
28
A
ASP
29
n
35
ASP
29
A
LEU
30
n
36
LEU
30
A
PHE
31
n
37
PHE
31
A
HIS
32
n
38
HIS
32
A
TRP
33
n
39
TRP
33
A
GLN
34
n
40
GLN
34
A
ALA
35
n
41
ALA
35
A
THR
36
n
42
THR
36
A
ILE
37
n
43
ILE
37
A
MET
38
n
44
MET
38
A
GLY
39
n
45
GLY
39
A
PRO
40
n
46
PRO
40
A
PRO
41
n
47
PRO
41
A
ASP
42
n
48
ASP
42
A
SER
43
n
49
SER
43
A
ALA
44
n
50
ALA
44
A
TYR
45
n
51
TYR
45
A
GLN
46
n
52
GLN
46
A
GLY
47
n
53
GLY
47
A
GLY
48
n
54
GLY
48
A
VAL
49
n
55
VAL
49
A
PHE
50
n
56
PHE
50
A
PHE
51
n
57
PHE
51
A
LEU
52
n
58
LEU
52
A
THR
53
n
59
THR
53
A
VAL
54
n
60
VAL
54
A
HIS
55
n
61
HIS
55
A
PHE
56
n
62
PHE
56
A
PRO
57
n
63
PRO
57
A
THR
58
n
64
THR
58
A
ASP
59
n
65
ASP
59
A
TYR
60
n
66
TYR
60
A
PRO
61
n
67
PRO
61
A
PHE
62
n
68
PHE
62
A
LYS
63
n
69
LYS
63
A
PRO
64
n
70
PRO
64
A
PRO
65
n
71
PRO
65
A
LYS
66
n
72
LYS
66
A
ILE
67
n
73
ILE
67
A
ALA
68
n
74
ALA
68
A
PHE
69
n
75
PHE
69
A
THR
70
n
76
THR
70
A
THR
71
n
77
THR
71
A
LYS
72
n
78
LYS
72
A
ILE
73
n
79
ILE
73
A
TYR
74
n
80
TYR
74
A
HIS
75
n
81
HIS
75
A
PRO
76
n
82
PRO
76
A
ASN
77
n
83
ASN
77
A
ILE
78
n
84
ILE
78
A
ASN
79
n
85
ASN
79
A
SER
80
n
86
SER
80
A
ASN
81
n
87
ASN
81
A
GLY
82
n
88
GLY
82
A
SER
83
n
89
SER
83
A
ILE
84
n
90
ILE
84
A
CYS
85
n
91
CYS
85
A
LEU
86
n
92
LEU
86
A
ASP
87
n
93
ASP
87
A
ILE
88
n
94
ILE
88
A
LEU
89
n
95
LEU
89
A
ARG
90
n
96
ARG
90
A
SER
91
n
97
SER
91
A
GLN
92
n
98
GLN
92
A
TRP
93
n
99
TRP
93
A
SER
94
n
100
SER
94
A
PRO
95
n
101
PRO
95
A
ALA
96
n
102
ALA
96
A
LEU
97
n
103
LEU
97
A
THR
98
n
104
THR
98
A
VAL
99
n
105
VAL
99
A
SER
100
n
106
SER
100
A
LYS
101
n
107
LYS
101
A
VAL
102
n
108
VAL
102
A
LEU
103
n
109
LEU
103
A
LEU
104
n
110
LEU
104
A
SER
105
n
111
SER
105
A
ILE
106
n
112
ILE
106
A
CYS
107
n
113
CYS
107
A
SER
108
n
114
SER
108
A
LEU
109
n
115
LEU
109
A
LEU
110
n
116
LEU
110
A
CYS
111
n
117
CYS
111
A
ASP
112
n
118
ASP
112
A
PRO
113
n
119
PRO
113
A
ASN
114
n
120
ASN
114
A
PRO
115
n
121
PRO
115
A
ASP
116
n
122
ASP
116
A
ASP
117
n
123
ASP
117
A
PRO
118
n
124
PRO
118
A
LEU
119
n
125
LEU
119
A
VAL
120
n
126
VAL
120
A
PRO
121
n
127
PRO
121
A
ASP
122
n
128
ASP
122
A
ILE
123
n
129
ILE
123
A
ALA
124
n
130
ALA
124
A
GLN
125
n
131
GLN
125
A
ILE
126
n
132
ILE
126
A
TYR
127
n
133
TYR
127
A
LYS
128
n
134
LYS
128
A
SER
129
n
135
SER
129
A
ASP
130
n
136
ASP
130
A
LYS
131
n
137
LYS
131
A
GLU
132
n
138
GLU
132
A
LYS
133
n
139
LYS
133
A
TYR
134
n
140
TYR
134
A
ASN
135
n
141
ASN
135
A
ARG
136
n
142
ARG
136
A
HIS
137
n
143
HIS
137
A
ALA
138
n
144
ALA
138
A
ARG
139
n
145
ARG
139
A
GLU
140
n
146
GLU
140
A
TRP
141
n
147
TRP
141
A
THR
142
n
148
THR
142
A
GLN
143
n
149
GLN
143
A
LYS
144
n
150
LYS
144
A
TYR
145
n
151
TYR
145
A
ALA
146
n
152
ALA
146
A
MET
147
n
153
MET
147
A
n
1
-2
B
n
2
-1
B
n
3
0
B
MET
1
n
4
MET
1
B
GLN
2
n
5
GLN
2
B
ILE
3
n
6
ILE
3
B
PHE
4
n
7
PHE
4
B
VAL
5
n
8
VAL
5
B
LYS
6
n
9
LYS
6
B
THR
7
n
10
THR
7
B
LEU
8
n
11
LEU
8
B
THR
9
n
12
THR
9
B
GLY
10
n
13
GLY
10
B
LYS
11
n
14
LYS
11
B
THR
12
n
15
THR
12
B
ILE
13
n
16
ILE
13
B
THR
14
n
17
THR
14
B
LEU
15
n
18
LEU
15
B
GLU
16
n
19
GLU
16
B
VAL
17
n
20
VAL
17
B
GLU
18
n
21
GLU
18
B
PRO
19
n
22
PRO
19
B
SER
20
n
23
SER
20
B
ASP
21
n
24
ASP
21
B
THR
22
n
25
THR
22
B
ILE
23
n
26
ILE
23
B
GLU
24
n
27
GLU
24
B
ASN
25
n
28
ASN
25
B
VAL
26
n
29
VAL
26
B
LYS
27
n
30
LYS
27
B
ALA
28
n
31
ALA
28
B
LYS
29
n
32
LYS
29
B
ILE
30
n
33
ILE
30
B
GLN
31
n
34
GLN
31
B
ASP
32
n
35
ASP
32
B
LYS
33
n
36
LYS
33
B
GLU
34
n
37
GLU
34
B
GLY
35
n
38
GLY
35
B
ILE
36
n
39
ILE
36
B
PRO
37
n
40
PRO
37
B
PRO
38
n
41
PRO
38
B
ASP
39
n
42
ASP
39
B
GLN
40
n
43
GLN
40
B
GLN
41
n
44
GLN
41
B
ARG
42
n
45
ARG
42
B
LEU
43
n
46
LEU
43
B
ILE
44
n
47
ILE
44
B
PHE
45
n
48
PHE
45
B
ALA
46
n
49
ALA
46
B
GLY
47
n
50
GLY
47
B
LYS
48
n
51
LYS
48
B
GLN
49
n
52
GLN
49
B
LEU
50
n
53
LEU
50
B
GLU
51
n
54
GLU
51
B
ASP
52
n
55
ASP
52
B
GLY
53
n
56
GLY
53
B
ARG
54
n
57
ARG
54
B
THR
55
n
58
THR
55
B
LEU
56
n
59
LEU
56
B
SER
57
n
60
SER
57
B
ASP
58
n
61
ASP
58
B
TYR
59
n
62
TYR
59
B
ASN
60
n
63
ASN
60
B
ILE
61
n
64
ILE
61
B
GLN
62
n
65
GLN
62
B
LYS
63
n
66
LYS
63
B
GLU
64
n
67
GLU
64
B
SER
65
n
68
SER
65
B
THR
66
n
69
THR
66
B
LEU
67
n
70
LEU
67
B
HIS
68
n
71
HIS
68
B
LEU
69
n
72
LEU
69
B
VAL
70
n
73
VAL
70
B
LEU
71
n
74
LEU
71
B
ARG
72
n
75
ARG
72
B
n
76
73
B
n
77
74
B
n
78
75
B
n
79
76
B
n
1
587
C
n
2
588
C
n
3
589
C
n
4
590
C
n
5
591
C
n
6
592
C
n
7
593
C
n
8
594
C
n
9
595
C
n
10
596
C
n
11
597
C
n
12
598
C
n
13
599
C
n
14
600
C
n
15
601
C
n
16
602
C
n
17
603
C
n
18
604
C
SER
605
n
19
SER
605
C
LYS
606
n
20
LYS
606
C
CYS
607
n
21
CYS
607
C
ARG
608
n
22
ARG
608
C
LYS
609
n
23
LYS
609
C
ALA
610
n
24
ALA
610
C
GLY
611
n
25
GLY
611
C
CYS
612
n
26
CYS
612
C
VAL
613
n
27
VAL
613
C
TYR
614
n
28
TYR
614
C
PHE
615
n
29
PHE
615
C
GLY
616
n
30
GLY
616
C
THR
617
n
31
THR
617
C
PRO
618
n
32
PRO
618
C
GLU
619
n
33
GLU
619
C
ASN
620
n
34
ASN
620
C
LYS
621
n
35
LYS
621
C
GLY
622
n
36
GLY
622
C
PHE
623
n
37
PHE
623
C
CYS
624
n
38
CYS
624
C
THR
625
n
39
THR
625
C
LEU
626
n
40
LEU
626
C
CYS
627
n
41
CYS
627
C
PHE
628
n
42
PHE
628
C
ILE
629
n
43
ILE
629
C
GLU
630
n
44
GLU
630
C
TYR
631
n
45
TYR
631
C
ARG
632
n
46
ARG
632
C
GLU
633
n
47
GLU
633
C
ASN
634
n
48
ASN
634
C
LYS
635
n
49
LYS
635
C
n
1
-5
D
n
2
-4
D
n
3
-3
D
n
4
-2
D
n
5
-1
D
n
6
0
D
MET
1
n
7
MET
1
D
ALA
2
n
8
ALA
2
D
LEU
3
n
9
LEU
3
D
LYS
4
n
10
LYS
4
D
ARG
5
n
11
ARG
5
D
ILE
6
n
12
ILE
6
D
GLN
7
n
13
GLN
7
D
LYS
8
n
14
LYS
8
D
GLU
9
n
15
GLU
9
D
LEU
10
n
16
LEU
10
D
SER
11
n
17
SER
11
D
ASP
12
n
18
ASP
12
D
LEU
13
n
19
LEU
13
D
GLN
14
n
20
GLN
14
D
ARG
15
n
21
ARG
15
D
ASP
16
n
22
ASP
16
D
PRO
17
n
23
PRO
17
D
PRO
18
n
24
PRO
18
D
ALA
19
n
25
ALA
19
D
HIS
20
n
26
HIS
20
D
CYS
21
n
27
CYS
21
D
SER
22
n
28
SER
22
D
ALA
23
n
29
ALA
23
D
GLY
24
n
30
GLY
24
D
PRO
25
n
31
PRO
25
D
VAL
26
n
32
VAL
26
D
GLY
27
n
33
GLY
27
D
ASP
28
n
34
ASP
28
D
ASP
29
n
35
ASP
29
D
LEU
30
n
36
LEU
30
D
PHE
31
n
37
PHE
31
D
HIS
32
n
38
HIS
32
D
TRP
33
n
39
TRP
33
D
GLN
34
n
40
GLN
34
D
ALA
35
n
41
ALA
35
D
THR
36
n
42
THR
36
D
ILE
37
n
43
ILE
37
D
MET
38
n
44
MET
38
D
GLY
39
n
45
GLY
39
D
PRO
40
n
46
PRO
40
D
PRO
41
n
47
PRO
41
D
ASP
42
n
48
ASP
42
D
SER
43
n
49
SER
43
D
ALA
44
n
50
ALA
44
D
TYR
45
n
51
TYR
45
D
GLN
46
n
52
GLN
46
D
GLY
47
n
53
GLY
47
D
GLY
48
n
54
GLY
48
D
VAL
49
n
55
VAL
49
D
PHE
50
n
56
PHE
50
D
PHE
51
n
57
PHE
51
D
LEU
52
n
58
LEU
52
D
THR
53
n
59
THR
53
D
VAL
54
n
60
VAL
54
D
HIS
55
n
61
HIS
55
D
PHE
56
n
62
PHE
56
D
PRO
57
n
63
PRO
57
D
THR
58
n
64
THR
58
D
ASP
59
n
65
ASP
59
D
TYR
60
n
66
TYR
60
D
PRO
61
n
67
PRO
61
D
PHE
62
n
68
PHE
62
D
LYS
63
n
69
LYS
63
D
PRO
64
n
70
PRO
64
D
PRO
65
n
71
PRO
65
D
LYS
66
n
72
LYS
66
D
ILE
67
n
73
ILE
67
D
ALA
68
n
74
ALA
68
D
PHE
69
n
75
PHE
69
D
THR
70
n
76
THR
70
D
THR
71
n
77
THR
71
D
LYS
72
n
78
LYS
72
D
ILE
73
n
79
ILE
73
D
TYR
74
n
80
TYR
74
D
HIS
75
n
81
HIS
75
D
PRO
76
n
82
PRO
76
D
ASN
77
n
83
ASN
77
D
ILE
78
n
84
ILE
78
D
ASN
79
n
85
ASN
79
D
SER
80
n
86
SER
80
D
ASN
81
n
87
ASN
81
D
GLY
82
n
88
GLY
82
D
SER
83
n
89
SER
83
D
ILE
84
n
90
ILE
84
D
CYS
85
n
91
CYS
85
D
LEU
86
n
92
LEU
86
D
ASP
87
n
93
ASP
87
D
ILE
88
n
94
ILE
88
D
LEU
89
n
95
LEU
89
D
ARG
90
n
96
ARG
90
D
SER
91
n
97
SER
91
D
GLN
92
n
98
GLN
92
D
TRP
93
n
99
TRP
93
D
SER
94
n
100
SER
94
D
PRO
95
n
101
PRO
95
D
ALA
96
n
102
ALA
96
D
LEU
97
n
103
LEU
97
D
THR
98
n
104
THR
98
D
VAL
99
n
105
VAL
99
D
SER
100
n
106
SER
100
D
LYS
101
n
107
LYS
101
D
VAL
102
n
108
VAL
102
D
LEU
103
n
109
LEU
103
D
LEU
104
n
110
LEU
104
D
SER
105
n
111
SER
105
D
ILE
106
n
112
ILE
106
D
CYS
107
n
113
CYS
107
D
SER
108
n
114
SER
108
D
LEU
109
n
115
LEU
109
D
LEU
110
n
116
LEU
110
D
CYS
111
n
117
CYS
111
D
ASP
112
n
118
ASP
112
D
PRO
113
n
119
PRO
113
D
ASN
114
n
120
ASN
114
D
PRO
115
n
121
PRO
115
D
ASP
116
n
122
ASP
116
D
ASP
117
n
123
ASP
117
D
PRO
118
n
124
PRO
118
D
LEU
119
n
125
LEU
119
D
VAL
120
n
126
VAL
120
D
PRO
121
n
127
PRO
121
D
ASP
122
n
128
ASP
122
D
ILE
123
n
129
ILE
123
D
ALA
124
n
130
ALA
124
D
GLN
125
n
131
GLN
125
D
ILE
126
n
132
ILE
126
D
TYR
127
n
133
TYR
127
D
LYS
128
n
134
LYS
128
D
SER
129
n
135
SER
129
D
ASP
130
n
136
ASP
130
D
LYS
131
n
137
LYS
131
D
GLU
132
n
138
GLU
132
D
LYS
133
n
139
LYS
133
D
TYR
134
n
140
TYR
134
D
ASN
135
n
141
ASN
135
D
ARG
136
n
142
ARG
136
D
HIS
137
n
143
HIS
137
D
ALA
138
n
144
ALA
138
D
ARG
139
n
145
ARG
139
D
GLU
140
n
146
GLU
140
D
TRP
141
n
147
TRP
141
D
THR
142
n
148
THR
142
D
GLN
143
n
149
GLN
143
D
LYS
144
n
150
LYS
144
D
TYR
145
n
151
TYR
145
D
ALA
146
n
152
ALA
146
D
MET
147
n
153
MET
147
D
n
1
-2
E
n
2
-1
E
n
3
0
E
MET
1
n
4
MET
1
E
GLN
2
n
5
GLN
2
E
ILE
3
n
6
ILE
3
E
PHE
4
n
7
PHE
4
E
VAL
5
n
8
VAL
5
E
LYS
6
n
9
LYS
6
E
THR
7
n
10
THR
7
E
LEU
8
n
11
LEU
8
E
THR
9
n
12
THR
9
E
GLY
10
n
13
GLY
10
E
LYS
11
n
14
LYS
11
E
THR
12
n
15
THR
12
E
ILE
13
n
16
ILE
13
E
THR
14
n
17
THR
14
E
LEU
15
n
18
LEU
15
E
GLU
16
n
19
GLU
16
E
VAL
17
n
20
VAL
17
E
GLU
18
n
21
GLU
18
E
PRO
19
n
22
PRO
19
E
SER
20
n
23
SER
20
E
ASP
21
n
24
ASP
21
E
THR
22
n
25
THR
22
E
ILE
23
n
26
ILE
23
E
GLU
24
n
27
GLU
24
E
ASN
25
n
28
ASN
25
E
VAL
26
n
29
VAL
26
E
LYS
27
n
30
LYS
27
E
ALA
28
n
31
ALA
28
E
LYS
29
n
32
LYS
29
E
ILE
30
n
33
ILE
30
E
GLN
31
n
34
GLN
31
E
ASP
32
n
35
ASP
32
E
LYS
33
n
36
LYS
33
E
GLU
34
n
37
GLU
34
E
GLY
35
n
38
GLY
35
E
ILE
36
n
39
ILE
36
E
PRO
37
n
40
PRO
37
E
PRO
38
n
41
PRO
38
E
ASP
39
n
42
ASP
39
E
GLN
40
n
43
GLN
40
E
GLN
41
n
44
GLN
41
E
ARG
42
n
45
ARG
42
E
LEU
43
n
46
LEU
43
E
ILE
44
n
47
ILE
44
E
PHE
45
n
48
PHE
45
E
ALA
46
n
49
ALA
46
E
GLY
47
n
50
GLY
47
E
LYS
48
n
51
LYS
48
E
GLN
49
n
52
GLN
49
E
LEU
50
n
53
LEU
50
E
GLU
51
n
54
GLU
51
E
ASP
52
n
55
ASP
52
E
GLY
53
n
56
GLY
53
E
ARG
54
n
57
ARG
54
E
THR
55
n
58
THR
55
E
LEU
56
n
59
LEU
56
E
SER
57
n
60
SER
57
E
ASP
58
n
61
ASP
58
E
TYR
59
n
62
TYR
59
E
ASN
60
n
63
ASN
60
E
ILE
61
n
64
ILE
61
E
GLN
62
n
65
GLN
62
E
LYS
63
n
66
LYS
63
E
GLU
64
n
67
GLU
64
E
SER
65
n
68
SER
65
E
THR
66
n
69
THR
66
E
LEU
67
n
70
LEU
67
E
HIS
68
n
71
HIS
68
E
LEU
69
n
72
LEU
69
E
VAL
70
n
73
VAL
70
E
LEU
71
n
74
LEU
71
E
ARG
72
n
75
ARG
72
E
n
76
73
E
n
77
74
E
n
78
75
E
n
79
76
E
n
1
587
F
n
2
588
F
n
3
589
F
n
4
590
F
n
5
591
F
n
6
592
F
n
7
593
F
n
8
594
F
n
9
595
F
n
10
596
F
n
11
597
F
n
12
598
F
n
13
599
F
n
14
600
F
n
15
601
F
n
16
602
F
n
17
603
F
n
18
604
F
SER
605
n
19
SER
605
F
LYS
606
n
20
LYS
606
F
CYS
607
n
21
CYS
607
F
ARG
608
n
22
ARG
608
F
LYS
609
n
23
LYS
609
F
ALA
610
n
24
ALA
610
F
GLY
611
n
25
GLY
611
F
CYS
612
n
26
CYS
612
F
VAL
613
n
27
VAL
613
F
TYR
614
n
28
TYR
614
F
PHE
615
n
29
PHE
615
F
GLY
616
n
30
GLY
616
F
THR
617
n
31
THR
617
F
PRO
618
n
32
PRO
618
F
GLU
619
n
33
GLU
619
F
ASN
620
n
34
ASN
620
F
LYS
621
n
35
LYS
621
F
GLY
622
n
36
GLY
622
F
PHE
623
n
37
PHE
623
F
CYS
624
n
38
CYS
624
F
THR
625
n
39
THR
625
F
LEU
626
n
40
LEU
626
F
CYS
627
n
41
CYS
627
F
PHE
628
n
42
PHE
628
F
ILE
629
n
43
ILE
629
F
GLU
630
n
44
GLU
630
F
TYR
631
n
45
TYR
631
F
ARG
632
n
46
ARG
632
F
GLU
633
n
47
GLU
633
F
ASN
634
n
48
ASN
634
F
LYS
635
n
49
LYS
635
F
13.2609
3.4589
2.4228
6.1551
3.6380
10.1513
-0.2905
-0.4307
0.3014
-0.4124
0.3140
0.4103
-1.0357
1.1709
-0.0234
-0.5801
-0.0904
-0.0359
-0.4841
0.0597
-0.4289
refined
-36.7461
20.3026
64.2197
X-RAY DIFFRACTION
6.3364
1.9409
1.7774
15.3705
4.6065
10.6419
-0.7808
1.0466
0.3943
-2.1931
1.3058
-0.2936
-2.3231
1.9386
-0.5250
0.5577
-0.9076
0.0398
0.1725
-0.1410
-0.4883
refined
-25.9195
17.7890
43.6012
X-RAY DIFFRACTION
50.8442
8.4646
3.2223
42.2611
14.9963
44.9484
-0.3665
1.3702
-4.1335
0.1152
1.5811
-1.9516
1.8213
2.8831
-1.2146
-0.7426
-0.0592
-0.1028
-0.2453
-0.2041
-0.2868
refined
-27.7701
-4.3938
44.3441
X-RAY DIFFRACTION
5.4170
-1.7057
1.1844
14.2252
4.4872
10.3487
0.6000
0.0323
0.2312
0.0111
-0.6426
0.4908
1.6588
-0.2549
0.0426
-0.3885
0.0155
0.0786
-0.6307
-0.0109
-0.4151
refined
-35.9470
21.6829
-7.8757
X-RAY DIFFRACTION
10.8325
4.6286
4.0029
9.8300
2.4731
10.3415
1.1882
-0.8430
-0.5692
2.1166
-0.4678
0.2028
2.3933
-0.7979
-0.7204
1.0243
-0.5801
-0.1239
-0.2837
-0.0370
-0.4339
refined
-28.3493
13.5350
12.7369
X-RAY DIFFRACTION
38.9295
0.0422
7.1758
52.1396
8.3455
38.1717
0.6473
0.1677
0.4737
1.6447
0.5544
-4.1433
1.2430
2.7195
-1.2016
-0.2806
0.2274
-0.0646
-0.6408
-0.1888
-0.3180
refined
-10.0871
26.2502
12.0151
X-RAY DIFFRACTION
A
1
A
147
X-RAY DIFFRACTION
1
B
1
B
73
X-RAY DIFFRACTION
2
C
605
C
635
X-RAY DIFFRACTION
3
D
1
D
147
X-RAY DIFFRACTION
4
E
1
E
73
X-RAY DIFFRACTION
5
F
605
F
635
X-RAY DIFFRACTION
6
author_defined_assembly
3
trimeric
author_defined_assembly
3
trimeric
C
CYS
607
C
SG
CYS
21
1_555
C
ZN
900
G
ZN
ZN
1_555
C
CYS
612
C
SG
CYS
26
1_555
115.9
C
CYS
607
C
SG
CYS
21
1_555
C
ZN
900
G
ZN
ZN
1_555
C
CYS
624
C
SG
CYS
38
1_555
102.8
C
CYS
612
C
SG
CYS
26
1_555
C
ZN
900
G
ZN
ZN
1_555
C
CYS
624
C
SG
CYS
38
1_555
102.8
C
CYS
607
C
SG
CYS
21
1_555
C
ZN
900
G
ZN
ZN
1_555
C
CYS
627
C
SG
CYS
41
1_555
110.2
C
CYS
612
C
SG
CYS
26
1_555
C
ZN
900
G
ZN
ZN
1_555
C
CYS
627
C
SG
CYS
41
1_555
123.1
C
CYS
624
C
SG
CYS
38
1_555
C
ZN
900
G
ZN
ZN
1_555
C
CYS
627
C
SG
CYS
41
1_555
97.4
F
CYS
607
F
SG
CYS
21
1_555
F
ZN
900
H
ZN
ZN
1_555
F
CYS
612
F
SG
CYS
26
1_555
109.7
F
CYS
607
F
SG
CYS
21
1_555
F
ZN
900
H
ZN
ZN
1_555
F
CYS
624
F
SG
CYS
38
1_555
107.5
F
CYS
612
F
SG
CYS
26
1_555
F
ZN
900
H
ZN
ZN
1_555
F
CYS
624
F
SG
CYS
38
1_555
103.9
F
CYS
607
F
SG
CYS
21
1_555
F
ZN
900
H
ZN
ZN
1_555
F
CYS
627
F
SG
CYS
41
1_555
106.5
F
CYS
612
F
SG
CYS
26
1_555
F
ZN
900
H
ZN
ZN
1_555
F
CYS
627
F
SG
CYS
41
1_555
125.1
F
CYS
624
F
SG
CYS
38
1_555
F
ZN
900
H
ZN
ZN
1_555
F
CYS
627
F
SG
CYS
41
1_555
102.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
24
A
N
GLY
30
A
O
GLN
34
A
O
GLN
40
A
N
ALA
35
A
N
ALA
41
A
O
LEU
52
A
O
LEU
58
A
N
HIS
55
A
N
HIS
61
A
O
LYS
66
A
O
LYS
72
B
O
ILE
13
B
O
ILE
16
B
N
VAL
5
B
N
VAL
8
B
N
PHE
4
B
N
PHE
7
B
O
LEU
67
B
O
LEU
70
B
O
VAL
70
B
O
VAL
73
B
N
ARG
42
B
N
ARG
45
B
N
PHE
45
B
N
PHE
48
B
O
LYS
48
B
O
LYS
51
D
N
GLY
24
D
N
GLY
30
D
O
GLN
34
D
O
GLN
40
D
N
ALA
35
D
N
ALA
41
D
O
LEU
52
D
O
LEU
58
D
N
HIS
55
D
N
HIS
61
D
O
LYS
66
D
O
LYS
72
E
O
ILE
13
E
O
ILE
16
E
N
VAL
5
E
N
VAL
8
E
N
PHE
4
E
N
PHE
7
E
O
LEU
67
E
O
LEU
70
E
O
VAL
70
E
O
VAL
73
E
N
ARG
42
E
N
ARG
45
E
N
PHE
45
E
N
PHE
48
E
O
LYS
48
E
O
LYS
51
1
A
GLY
-5
A
GLY
1
1
Y
1
A
SER
-4
A
SER
2
1
Y
1
A
HIS
-3
A
HIS
3
1
Y
1
A
MET
-2
A
MET
4
1
Y
1
A
LEU
-1
A
LEU
5
1
Y
1
A
GLU
0
A
GLU
6
1
Y
1
B
GLY
-2
B
GLY
1
1
Y
1
B
SER
-1
B
SER
2
1
Y
1
B
HIS
0
B
HIS
3
1
Y
1
B
LEU
73
B
LEU
76
1
Y
1
B
ARG
74
B
ARG
77
1
Y
1
B
GLY
75
B
GLY
78
1
Y
1
B
GLY
76
B
GLY
79
1
Y
1
C
GLY
587
C
GLY
1
1
Y
1
C
SER
588
C
SER
2
1
Y
1
C
PRO
589
C
PRO
3
1
Y
1
C
GLU
590
C
GLU
4
1
Y
1
C
PHE
591
C
PHE
5
1
Y
1
C
SER
592
C
SER
6
1
Y
1
C
GLN
593
C
GLN
7
1
Y
1
C
ALA
594
C
ALA
8
1
Y
1
C
ALA
595
C
ALA
9
1
Y
1
C
ARG
596
C
ARG
10
1
Y
1
C
THR
597
C
THR
11
1
Y
1
C
PRO
598
C
PRO
12
1
Y
1
C
GLY
599
C
GLY
13
1
Y
1
C
ASP
600
C
ASP
14
1
Y
1
C
ARG
601
C
ARG
15
1
Y
1
C
THR
602
C
THR
16
1
Y
1
C
GLY
603
C
GLY
17
1
Y
1
C
THR
604
C
THR
18
1
Y
1
D
GLY
-5
D
GLY
1
1
Y
1
D
SER
-4
D
SER
2
1
Y
1
D
HIS
-3
D
HIS
3
1
Y
1
D
MET
-2
D
MET
4
1
Y
1
D
LEU
-1
D
LEU
5
1
Y
1
D
GLU
0
D
GLU
6
1
Y
1
E
GLY
-2
E
GLY
1
1
Y
1
E
SER
-1
E
SER
2
1
Y
1
E
HIS
0
E
HIS
3
1
Y
1
E
LEU
73
E
LEU
76
1
Y
1
E
ARG
74
E
ARG
77
1
Y
1
E
GLY
75
E
GLY
78
1
Y
1
E
GLY
76
E
GLY
79
1
Y
1
F
GLY
587
F
GLY
1
1
Y
1
F
SER
588
F
SER
2
1
Y
1
F
PRO
589
F
PRO
3
1
Y
1
F
GLU
590
F
GLU
4
1
Y
1
F
PHE
591
F
PHE
5
1
Y
1
F
SER
592
F
SER
6
1
Y
1
F
GLN
593
F
GLN
7
1
Y
1
F
ALA
594
F
ALA
8
1
Y
1
F
ALA
595
F
ALA
9
1
Y
1
F
ARG
596
F
ARG
10
1
Y
1
F
THR
597
F
THR
11
1
Y
1
F
PRO
598
F
PRO
12
1
Y
1
F
GLY
599
F
GLY
13
1
Y
1
F
ASP
600
F
ASP
14
1
Y
1
F
ARG
601
F
ARG
15
1
Y
1
F
THR
602
F
THR
16
1
Y
1
F
GLY
603
F
GLY
17
1
Y
1
F
THR
604
F
THR
18
1
Y
1
A
A
CE
NZ
LYS
LYS
72
72
0.222
0.025
1.486
1.708
N
1
B
B
CG
OD1
ASP
ASP
32
32
0.213
0.023
1.249
1.462
N
1
E
E
CD
OE2
GLU
GLU
16
16
0.077
0.011
1.252
1.329
N
1
D
F
CD1
O
TYR
ASN
145
634
2.18
1_555
6_555
1
A
PRO
18
-69.22
33.04
1
A
ALA
19
72.36
-30.45
1
A
HIS
20
-141.62
-8.02
1
A
ASP
59
-94.93
30.76
1
A
ARG
90
-116.57
-91.61
1
B
PRO
37
-38.78
132.23
1
B
GLN
62
-115.05
-159.23
1
D
PRO
18
-69.63
32.48
1
D
ALA
19
72.89
-31.62
1
D
HIS
20
-142.44
-8.14
1
D
ASP
59
-94.82
31.21
1
D
ARG
90
-115.07
-95.06
1
E
PRO
37
-38.20
131.66
1
E
GLN
62
-113.90
-159.73
94.095
-3.19
-1.60
0.00
-3.19
0.00
4.79
0.876
0.842
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.31882
0.27984
0.284
0.28381
3.40
25.00
962
9612
8650
10.0
98.09
102.112
0.724
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
0.767
0.80
0.80
1.40
PDB ENTRY: 1UBQ, 1X23
MAXIMUM LIKELIHOOD
MASK
3.40
25.00
0
3988
2
0
3986
0.009
0.022
4090
1.013
1.975
5538
5.313
5.000
494
37.848
24.556
180
18.909
15.000
722
12.395
15.000
20
0.070
0.200
608
0.003
0.020
3074
0.194
0.200
1669
0.302
0.200
2715
0.125
0.200
127
0.323
0.200
127
0.208
0.200
5
0.834
2.500
2587
1.281
5.000
4086
1.253
2.500
1707
1.823
5.000
1452
1
A
1
588
X-RAY DIFFRACTION
tight positional
0.01
0.05
1
B
2
288
X-RAY DIFFRACTION
tight positional
0.02
0.05
1
C
3
124
X-RAY DIFFRACTION
tight positional
0.01
0.05
1
A
1
582
X-RAY DIFFRACTION
medium positional
0.15
0.50
1
B
2
286
X-RAY DIFFRACTION
medium positional
0.18
0.50
1
C
3
125
X-RAY DIFFRACTION
medium positional
0.09
0.50
1
A
1
588
X-RAY DIFFRACTION
tight thermal
0.02
0.50
1
B
2
288
X-RAY DIFFRACTION
tight thermal
0.02
0.50
1
C
3
124
X-RAY DIFFRACTION
tight thermal
0.02
0.50
1
A
1
582
X-RAY DIFFRACTION
medium thermal
0.16
2.00
1
B
2
286
X-RAY DIFFRACTION
medium thermal
0.15
2.00
1
C
3
125
X-RAY DIFFRACTION
medium thermal
0.14
2.00
0.436
43.6
0.430
3.469
61
502
563
25
100.00
3.4
25
3OJ4
9814
9637
0
-3
0.115
1
16.8
6.1
98.2
3.4
3.52
3.3
955
0.75
3.9
99.8
data collection
BOS
phasing
PHASER
refinement
REFMAC
5.2.0019
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of the A20 ZnF4, ubiquitin and UbcH5A complex
1
N
N
2
N
N
3
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
MET
1
A
MET
7
HELX_P
A
ASP
16
A
ASP
22
1
1
16
A
LEU
86
A
LEU
92
HELX_P
A
ARG
90
A
ARG
96
5
2
5
A
THR
98
A
THR
104
HELX_P
A
ASP
112
A
ASP
118
1
3
15
A
VAL
120
A
VAL
126
HELX_P
A
ASP
130
A
ASP
136
1
4
11
A
ASP
130
A
ASP
136
HELX_P
A
ALA
146
A
ALA
152
1
5
17
B
THR
22
B
THR
25
HELX_P
B
GLU
34
B
GLU
37
1
6
13
B
PRO
37
B
PRO
40
HELX_P
B
ASP
39
B
ASP
42
5
7
3
B
THR
55
B
THR
58
HELX_P
B
ASN
60
B
ASN
63
1
8
6
C
THR
617
C
THR
31
HELX_P
C
LYS
621
C
LYS
35
5
9
5
C
CYS
624
C
CYS
38
HELX_P
C
LYS
635
C
LYS
49
1
10
12
D
MET
1
D
MET
7
HELX_P
D
ASP
16
D
ASP
22
1
11
16
D
LEU
86
D
LEU
92
HELX_P
D
ARG
90
D
ARG
96
5
12
5
D
THR
98
D
THR
104
HELX_P
D
ASP
112
D
ASP
118
1
13
15
D
VAL
120
D
VAL
126
HELX_P
D
ASP
130
D
ASP
136
1
14
11
D
ASP
130
D
ASP
136
HELX_P
D
ALA
146
D
ALA
152
1
15
17
E
THR
22
E
THR
25
HELX_P
E
GLU
34
E
GLU
37
1
16
13
E
PRO
37
E
PRO
40
HELX_P
E
ASP
39
E
ASP
42
5
17
3
E
THR
55
E
THR
58
HELX_P
E
ASN
60
E
ASN
63
1
18
6
F
THR
617
F
THR
31
HELX_P
F
LYS
621
F
LYS
35
5
19
5
F
CYS
624
F
CYS
38
HELX_P
F
LYS
635
F
LYS
49
1
20
12
metalc
2.300
C
CYS
607
C
SG
CYS
21
1_555
C
ZN
900
G
ZN
ZN
1_555
metalc
2.323
C
CYS
612
C
SG
CYS
26
1_555
C
ZN
900
G
ZN
ZN
1_555
metalc
2.325
C
CYS
624
C
SG
CYS
38
1_555
C
ZN
900
G
ZN
ZN
1_555
metalc
2.318
C
CYS
627
C
SG
CYS
41
1_555
C
ZN
900
G
ZN
ZN
1_555
metalc
2.303
F
CYS
607
F
SG
CYS
21
1_555
F
ZN
900
H
ZN
ZN
1_555
metalc
2.328
F
CYS
612
F
SG
CYS
26
1_555
F
ZN
900
H
ZN
ZN
1_555
metalc
2.327
F
CYS
624
F
SG
CYS
38
1_555
F
ZN
900
H
ZN
ZN
1_555
metalc
2.316
F
CYS
627
F
SG
CYS
41
1_555
F
ZN
900
H
ZN
ZN
1_555
LIGASE/PROTEIN BINDING
ubiquitin, zinc finger, ubiquitin conjugating enzyme, zinc ion, LIGASE-PROTEIN BINDING complex
A
TYR
60
A
TYR
66
1
A
PRO
61
A
PRO
67
6.77
D
TYR
60
D
TYR
66
1
D
PRO
61
D
PRO
67
4.15
A
D
B
E
C
F
A
MET
1
A
MET
7
A
MET
147
A
MET
153
2
D
MET
1
D
MET
7
D
MET
147
D
MET
153
2
B
MET
1
B
MET
4
B
ARG
72
B
ARG
75
2
E
MET
1
E
MET
4
E
ARG
72
E
ARG
75
2
C
SER
605
C
SER
19
C
LYS
635
C
LYS
49
2
F
SER
605
F
SER
19
F
LYS
635
F
LYS
49
2
UB2D1_HUMAN
UNP
1
1
P51668
MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS
NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
UBB_HUMAN
UNP
2
1
P0CG47
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
TNAP3_HUMAN
UNP
3
592
P21580
SQAARTPGDRTGTSKCRKAGCVYFGTPENKGFCTLCFIEYRENK
1
147
3OJ4
1
147
P51668
A
1
7
153
1
76
3OJ4
1
76
P0CG47
B
2
4
79
592
635
3OJ4
592
635
P21580
C
3
6
49
1
147
3OJ4
1
147
P51668
D
1
7
153
1
76
3OJ4
1
76
P0CG47
E
2
4
79
592
635
3OJ4
592
635
P21580
F
3
6
49
1
expression tag
GLY
-5
3OJ4
A
P51668
UNP
1
1
expression tag
SER
-4
3OJ4
A
P51668
UNP
2
1
expression tag
HIS
-3
3OJ4
A
P51668
UNP
3
1
expression tag
MET
-2
3OJ4
A
P51668
UNP
4
1
expression tag
LEU
-1
3OJ4
A
P51668
UNP
5
1
expression tag
GLU
0
3OJ4
A
P51668
UNP
6
2
expression tag
GLY
-2
3OJ4
B
P0CG47
UNP
1
2
expression tag
SER
-1
3OJ4
B
P0CG47
UNP
2
2
expression tag
HIS
0
3OJ4
B
P0CG47
UNP
3
3
expression tag
GLY
587
3OJ4
C
P21580
UNP
1
3
expression tag
SER
588
3OJ4
C
P21580
UNP
2
3
expression tag
PRO
589
3OJ4
C
P21580
UNP
3
3
expression tag
GLU
590
3OJ4
C
P21580
UNP
4
3
expression tag
PHE
591
3OJ4
C
P21580
UNP
5
4
expression tag
GLY
-5
3OJ4
D
P51668
UNP
1
4
expression tag
SER
-4
3OJ4
D
P51668
UNP
2
4
expression tag
HIS
-3
3OJ4
D
P51668
UNP
3
4
expression tag
MET
-2
3OJ4
D
P51668
UNP
4
4
expression tag
LEU
-1
3OJ4
D
P51668
UNP
5
4
expression tag
GLU
0
3OJ4
D
P51668
UNP
6
5
expression tag
GLY
-2
3OJ4
E
P0CG47
UNP
1
5
expression tag
SER
-1
3OJ4
E
P0CG47
UNP
2
5
expression tag
HIS
0
3OJ4
E
P0CG47
UNP
3
6
expression tag
GLY
587
3OJ4
F
P21580
UNP
1
6
expression tag
SER
588
3OJ4
F
P21580
UNP
2
6
expression tag
PRO
589
3OJ4
F
P21580
UNP
3
6
expression tag
GLU
590
3OJ4
F
P21580
UNP
4
6
expression tag
PHE
591
3OJ4
F
P21580
UNP
5
4
5
4
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
CYS
21
A
CYS
27
A
VAL
26
A
VAL
32
A
ASP
29
A
ASP
35
A
MET
38
A
MET
44
A
VAL
49
A
VAL
55
A
HIS
55
A
HIS
61
A
LYS
66
A
LYS
72
A
PHE
69
A
PHE
75
B
THR
12
B
THR
15
B
GLU
16
B
GLU
19
B
GLN
2
B
GLN
5
B
THR
7
B
THR
10
B
THR
66
B
THR
69
B
LEU
71
B
LEU
74
B
GLN
41
B
GLN
44
B
PHE
45
B
PHE
48
B
LYS
48
B
LYS
51
B
GLN
49
B
GLN
52
D
CYS
21
D
CYS
27
D
VAL
26
D
VAL
32
D
ASP
29
D
ASP
35
D
MET
38
D
MET
44
D
VAL
49
D
VAL
55
D
HIS
55
D
HIS
61
D
LYS
66
D
LYS
72
D
PHE
69
D
PHE
75
E
THR
12
E
THR
15
E
GLU
16
E
GLU
19
E
GLN
2
E
GLN
5
E
THR
7
E
THR
10
E
THR
66
E
THR
69
E
LEU
71
E
LEU
74
E
GLN
41
E
GLN
44
E
PHE
45
E
PHE
48
E
LYS
48
E
LYS
51
E
GLN
49
E
GLN
52
BINDING SITE FOR RESIDUE ZN C 900
C
ZN
900
Software
4
BINDING SITE FOR RESIDUE ZN F 900
F
ZN
900
Software
4
C
CYS
607
C
CYS
21
4
1_555
C
CYS
612
C
CYS
26
4
1_555
C
CYS
624
C
CYS
38
4
1_555
C
CYS
627
C
CYS
41
4
1_555
F
CYS
607
F
CYS
21
4
1_555
F
CYS
612
F
CYS
26
4
1_555
F
CYS
624
F
CYS
38
4
1_555
F
CYS
627
F
CYS
41
4
1_555
150
P 3 2 1