0.025106
0.000000
0.000000
0.000000
0.025106
0.000000
0.000000
0.000000
0.011825
0.00000
0.00000
0.00000
Chenoweth, D.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
39.831
39.831
84.567
C54 H62 N22 O10
1179.211
(23R,52R)-23,52-diamino-5,11,17,28,34,40,46,57-octamethyl-2,5,8,11,14,17,20,25,28,31,34,37,40,43,46,49,54,57,60,64-icosaazanonacyclo[54.2.1.1~4,7~.1~10,13~.1~16,19~.1~27,30~.1~33,36~.1~39,42~.1~45,48~]hexahexaconta-1(58),4(66),6,10(65),12,16(64),18,27(63),29,33(62),35,39(61),41,45(60),47,56(59)-hexadecaene-3,9,15,21,26,32,38,44,50,55-decone
non-polymer
C9 H13 I N3 O7 P
433.094
n
5-IODO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
Ca 2
40.078
CALCIUM ION
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
C
N
2
N
N
N
3
N
O
Y
4
N
C
Y
5
N
N
N
6
N
O
Y
7
N
C
N
8
N
N
N
9
N
O
Y
10
N
C
Y
11
N
N
N
12
N
O
N
13
N
C
N
14
N
N
N
15
N
O
Y
16
N
C
Y
17
N
N
N
18
N
O
N
19
N
C
N
20
N
O
Y
21
N
C
N
22
N
N
N
23
N
O
Y
24
N
C
Y
25
N
N
N
26
N
O
N
27
N
C
Y
28
N
N
N
29
N
O
Y
30
N
C
N
31
N
N
Y
32
N
C
N
33
N
N
N
34
N
C
N
35
N
N
Y
36
N
C
Y
37
N
N
Y
38
N
C
N
39
N
N
N
40
N
C
Y
41
N
N
Y
42
N
C
N
43
N
N
N
44
N
C
Y
45
N
N
Y
46
N
C
Y
47
N
C
N
48
N
N
Y
49
N
C
Y
50
N
N
N
51
N
C
Y
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
N
N
57
R
C
N
58
N
C
N
59
N
C
Y
60
N
C
Y
61
N
C
Y
62
N
C
N
63
N
C
Y
64
N
C
N
65
N
C
Y
66
N
C
Y
67
N
C
Y
68
N
C
N
69
N
C
Y
70
N
C
N
71
N
C
Y
72
N
C
Y
73
N
C
N
74
N
C
Y
75
N
C
N
76
N
C
Y
77
N
C
Y
78
N
C
Y
79
N
C
N
80
N
C
N
81
N
C
N
82
N
C
N
83
R
C
N
84
N
C
Y
85
N
C
Y
86
N
C
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
O
N
150
N
P
N
151
N
O
N
152
N
O
N
153
N
O
N
154
N
C
N
155
R
C
N
156
N
O
N
157
S
C
N
158
N
O
N
159
N
C
N
160
R
C
N
161
N
N
N
162
N
C
N
163
N
O
N
164
N
N
N
165
N
C
N
166
N
N
N
167
N
C
N
168
N
C
N
169
N
I
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
CA
N
184
N
O
N
185
N
P
N
186
N
O
N
187
N
O
N
188
N
O
N
189
N
C
N
190
R
C
N
191
N
O
N
192
S
C
N
193
N
O
N
194
N
C
N
195
R
C
Y
196
N
N
Y
197
N
C
Y
198
N
N
Y
199
N
C
Y
200
N
C
N
201
N
N
Y
202
N
N
Y
203
N
C
Y
204
N
N
Y
205
N
C
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
O
N
221
N
P
N
222
N
O
N
223
N
O
N
224
N
O
N
225
N
C
N
226
R
C
N
227
N
O
N
228
S
C
N
229
N
O
N
230
N
C
N
231
R
C
N
232
N
N
N
233
N
C
N
234
N
O
N
235
N
N
N
236
N
C
N
237
N
N
N
238
N
C
N
239
N
C
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
O
N
255
N
P
N
256
N
O
N
257
N
O
N
258
N
O
N
259
N
C
N
260
R
C
N
261
N
O
N
262
S
C
N
263
N
O
N
264
N
C
N
265
R
C
Y
266
N
N
Y
267
N
C
Y
268
N
N
Y
269
N
C
N
270
N
C
N
271
N
O
N
272
N
N
N
273
N
C
N
274
N
N
N
275
N
N
Y
276
N
C
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
O
N
292
N
P
N
293
N
O
N
294
N
O
N
295
N
O
N
296
N
C
N
297
R
C
N
298
N
O
N
299
S
C
N
300
N
O
N
301
N
C
N
302
R
C
N
303
N
N
N
304
N
C
N
305
N
O
N
306
N
N
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
O
N
328
N
H
N
329
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
Y
6
N
doub
N
7
N
sing
Y
8
N
sing
N
9
N
sing
Y
10
N
sing
Y
11
N
sing
N
12
N
doub
Y
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
doub
N
18
N
sing
N
19
N
sing
Y
20
N
sing
Y
21
N
sing
N
22
N
doub
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
doub
Y
30
N
sing
Y
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
doub
Y
36
N
doub
Y
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
Y
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
Y
50
N
sing
Y
51
N
doub
N
52
N
doub
Y
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
Y
65
N
sing
Y
66
N
doub
Y
67
N
sing
Y
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
Y
77
N
sing
Y
78
N
sing
N
79
N
sing
Y
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
Y
86
N
sing
Y
87
N
sing
Y
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
Y
94
N
sing
Y
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
Y
99
N
doub
Y
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
Y
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
Y
126
N
sing
Y
127
N
doub
N
128
N
sing
Y
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
Y
135
N
doub
Y
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
Y
141
N
doub
N
142
N
sing
Y
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
Y
215
N
sing
Y
216
N
sing
Y
217
N
doub
N
218
N
sing
Y
219
N
sing
Y
220
N
sing
Y
221
N
doub
N
222
N
sing
Y
223
N
doub
N
224
N
sing
N
225
N
sing
Y
226
N
sing
Y
227
N
doub
N
228
N
sing
Y
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
Y
288
N
sing
Y
289
N
sing
Y
290
N
doub
N
291
N
sing
Y
292
N
sing
N
293
N
sing
Y
294
N
doub
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
132
14521
14529
10.1021/ja105068b
20812704
Structural basis for cyclic py-im polyamide allosteric inhibition of nuclear receptor binding.
2010
10.2210/pdb3omj/pdb
pdb_00003omj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2008-08-07
MARMOSAIC 325 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.82654
1.0
BL12-2
SSRL
0.82654
SYNCHROTRON
SSRL BEAMLINE BL12-2
3170.902
5'-D(*CP*(C38)P*AP*GP*TP*AP*CP*TP*GP*G)-3'
2
syn
polymer
40.078
CALCIUM ION
4
syn
non-polymer
1179.211
(23R,52R)-23,52-diamino-5,11,17,28,34,40,46,57-octamethyl-2,5,8,11,14,17,20,25,28,31,34,37,40,43,46,49,54,57,60,64-icosaazanonacyclo[54.2.1.1~4,7~.1~10,13~.1~16,19~.1~27,30~.1~33,36~.1~39,42~.1~45,48~]hexahexaconta-1(58),4(66),6,10(65),12,16(64),18,27(63),29,33(62),35,39(61),41,45(60),47,56(59)-hexadecaene-3,9,15,21,26,32,38,44,50,55-decone
1
syn
non-polymer
18.015
water
237
nat
water
no
yes
(DC)(C38)(DA)(DG)(DT)(DA)(DC)(DT)(DG)(DG)
CCAGTACTGG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
1
2.24
51
VAPOR DIFFUSION, SITTING DROP
7.5
23% MPD, 35mM calcium acetate, 10mM Tris, pH 7.5, equilibrated against 35% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
-10.588
1
19
A
1
B
10
0.678
A_DC1:DG10_B
1
-16.868
0.148
0.274
-0.140
-7.076
1
19
A
2
B
9
1.706
A_C382:DG9_B
2
-6.312
0.186
-0.016
-0.097
6.150
1
20
A
3
B
8
3.835
A_DA3:DT8_B
3
-10.920
0.128
-0.097
-0.106
-2.231
1
19
A
4
B
7
-0.784
A_DG4:DC7_B
4
-4.045
-0.119
0.089
-0.073
0.367
1
20
A
5
B
6
-4.867
A_DT5:DA6_B
5
-14.693
-0.130
-0.025
-0.098
1.174
1
20
A
6
B
5
-4.883
A_DA6:DT5_B
6
-16.258
0.132
0.038
-0.094
2.390
1
19
A
7
B
4
-1.098
A_DC7:DG4_B
7
-4.657
0.120
0.092
-0.099
-2.932
1
20
A
8
B
3
3.784
A_DT8:DA3_B
8
-7.957
-0.095
-0.135
-0.128
16.582
1
19
A
9
B
2
0.866
A_DG9:C382_B
9
-5.000
-0.160
0.073
-0.044
22.996
1
19
A
10
B
1
-0.148
A_DG10:DC1_B
10
-17.052
-0.165
0.607
-0.103
3.122
34.991
A
A
1
2
12.958
B
B
10
9
3.279
7.696
-0.067
-0.122
AA_DC1C382:DG9DG10_BB
1
5.806
-9.775
33.677
-1.361
0.984
3.283
31.465
A
A
2
3
16.425
B
B
9
8
3.159
8.793
0.447
0.859
AA_C382DA3:DT8DG9_BB
2
0.739
-1.381
30.232
-0.069
-0.685
3.606
37.773
A
A
3
4
17.680
B
B
8
7
3.386
11.191
-1.721
0.255
AA_DA3DG4:DC7DT8_BB
3
-8.440
13.334
35.164
-1.209
1.450
3.173
32.250
A
A
4
5
5.142
B
B
7
6
3.202
2.852
-0.737
-0.150
AA_DG4DT5:DA6DC7_BB
4
0.184
-0.332
32.126
-0.765
1.359
3.389
36.623
A
A
5
6
11.578
B
B
6
5
3.276
7.231
-0.043
0.903
AA_DT5DA6:DT5DA6_BB
5
-0.164
0.263
35.926
0.415
0.046
3.222
32.134
A
A
6
7
4.468
B
B
5
4
3.237
2.471
0.783
-0.208
AA_DA6DC7:DG4DT5_BB
6
0.403
-0.729
32.039
-0.813
-1.344
3.566
37.649
A
A
7
8
16.742
B
B
4
3
3.331
10.589
1.752
0.281
AA_DC7DT8:DA3DG4_BB
7
7.944
-12.561
35.324
-1.065
-1.590
3.288
31.155
A
A
8
9
18.101
B
B
3
2
3.057
9.571
-0.796
1.292
AA_DT8DG9:C382DA3_BB
8
0.636
-1.203
29.677
0.589
1.603
3.083
33.306
A
A
9
10
6.285
B
B
2
1
3.188
3.579
0.344
0.135
AA_DG9DG10:DC1C382_BB
9
-5.676
9.967
32.641
-0.342
-1.516
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
pdbx_validate_polymer_linkage
struct_conn
struct_site
repository
Initial release
Version format compliance
Advisory
Data collection
Database references
Derived calculations
1
0
2010-09-08
1
1
2011-07-13
1
2
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2010-08-27
REL
REL
CA
CALCIUM ION
1P2
(23R,52R)-23,52-diamino-5,11,17,28,34,40,46,57-octamethyl-2,5,8,11,14,17,20,25,28,31,34,37,40,43,46,49,54,57,60,64-icosaazanonacyclo[54.2.1.1~4,7~.1~10,13~.1~16,19~.1~27,30~.1~33,36~.1~39,42~.1~45,48~]hexahexaconta-1(58),4(66),6,10(65),12,16(64),18,27(63),29,33(62),35,39(61),41,45(60),47,56(59)-hexadecaene-3,9,15,21,26,32,38,44,50,55-decone
HOH
water
CA
302
2
CA
CA
302
A
CA
300
2
CA
CA
300
A
CA
301
2
CA
CA
301
A
1P2
500
3
1P2
1P2
500
B
CA
303
2
CA
CA
303
B
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
18
4
HOH
HOH
18
A
HOH
20
4
HOH
HOH
20
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
26
4
HOH
HOH
26
A
HOH
32
4
HOH
HOH
32
A
HOH
34
4
HOH
HOH
34
A
HOH
35
4
HOH
HOH
35
A
HOH
38
4
HOH
HOH
38
A
HOH
41
4
HOH
HOH
41
A
HOH
46
4
HOH
HOH
46
A
HOH
48
4
HOH
HOH
48
A
HOH
49
4
HOH
HOH
49
A
HOH
50
4
HOH
HOH
50
A
HOH
51
4
HOH
HOH
51
A
HOH
52
4
HOH
HOH
52
A
HOH
58
4
HOH
HOH
58
A
HOH
59
4
HOH
HOH
59
A
HOH
60
4
HOH
HOH
60
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
63
4
HOH
HOH
63
A
HOH
66
4
HOH
HOH
66
A
HOH
70
4
HOH
HOH
70
A
HOH
73
4
HOH
HOH
73
A
HOH
74
4
HOH
HOH
74
A
HOH
75
4
HOH
HOH
75
A
HOH
76
4
HOH
HOH
76
A
HOH
77
4
HOH
HOH
77
A
HOH
81
4
HOH
HOH
81
A
HOH
82
4
HOH
HOH
82
A
HOH
88
4
HOH
HOH
88
A
HOH
89
4
HOH
HOH
89
A
HOH
90
4
HOH
HOH
90
A
HOH
93
4
HOH
HOH
93
A
HOH
94
4
HOH
HOH
94
A
HOH
96
4
HOH
HOH
96
A
HOH
99
4
HOH
HOH
99
A
HOH
100
4
HOH
HOH
100
A
HOH
104
4
HOH
HOH
104
A
HOH
105
4
HOH
HOH
105
A
HOH
109
4
HOH
HOH
109
A
HOH
110
4
HOH
HOH
110
A
HOH
113
4
HOH
HOH
113
A
HOH
117
4
HOH
HOH
117
A
HOH
118
4
HOH
HOH
118
A
HOH
119
4
HOH
HOH
119
A
HOH
121
4
HOH
HOH
121
A
HOH
122
4
HOH
HOH
122
A
HOH
123
4
HOH
HOH
123
A
HOH
124
4
HOH
HOH
124
A
HOH
126
4
HOH
HOH
126
A
HOH
128
4
HOH
HOH
128
A
HOH
133
4
HOH
HOH
133
A
HOH
135
4
HOH
HOH
135
A
HOH
136
4
HOH
HOH
136
A
HOH
141
4
HOH
HOH
141
A
HOH
147
4
HOH
HOH
147
A
HOH
149
4
HOH
HOH
149
A
HOH
152
4
HOH
HOH
152
A
HOH
153
4
HOH
HOH
153
A
HOH
160
4
HOH
HOH
160
A
HOH
161
4
HOH
HOH
161
A
HOH
162
4
HOH
HOH
162
A
HOH
174
4
HOH
HOH
174
A
HOH
177
4
HOH
HOH
177
A
HOH
185
4
HOH
HOH
185
A
HOH
186
4
HOH
HOH
186
A
HOH
190
4
HOH
HOH
190
A
HOH
191
4
HOH
HOH
191
A
HOH
192
4
HOH
HOH
192
A
HOH
193
4
HOH
HOH
193
A
HOH
195
4
HOH
HOH
195
A
HOH
199
4
HOH
HOH
199
A
HOH
201
4
HOH
HOH
201
A
HOH
206
4
HOH
HOH
206
A
HOH
207
4
HOH
HOH
207
A
HOH
208
4
HOH
HOH
208
A
HOH
211
4
HOH
HOH
211
A
HOH
215
4
HOH
HOH
215
A
HOH
217
4
HOH
HOH
217
A
HOH
218
4
HOH
HOH
218
A
HOH
219
4
HOH
HOH
219
A
HOH
220
4
HOH
HOH
220
A
HOH
222
4
HOH
HOH
222
A
HOH
223
4
HOH
HOH
223
A
HOH
226
4
HOH
HOH
226
A
HOH
227
4
HOH
HOH
227
A
HOH
230
4
HOH
HOH
230
A
HOH
232
4
HOH
HOH
232
A
HOH
233
4
HOH
HOH
233
A
HOH
235
4
HOH
HOH
235
A
HOH
237
4
HOH
HOH
237
A
HOH
239
4
HOH
HOH
239
A
HOH
240
4
HOH
HOH
240
A
HOH
241
4
HOH
HOH
241
A
HOH
242
4
HOH
HOH
242
A
HOH
243
4
HOH
HOH
243
A
HOH
244
4
HOH
HOH
244
A
HOH
246
4
HOH
HOH
246
A
HOH
247
4
HOH
HOH
247
A
HOH
248
4
HOH
HOH
248
A
HOH
249
4
HOH
HOH
249
A
HOH
250
4
HOH
HOH
250
A
HOH
251
4
HOH
HOH
251
A
HOH
252
4
HOH
HOH
252
A
HOH
253
4
HOH
HOH
253
A
HOH
11
4
HOH
HOH
11
B
HOH
12
4
HOH
HOH
12
B
HOH
17
4
HOH
HOH
17
B
HOH
21
4
HOH
HOH
21
B
HOH
27
4
HOH
HOH
27
B
HOH
28
4
HOH
HOH
28
B
HOH
29
4
HOH
HOH
29
B
HOH
30
4
HOH
HOH
30
B
HOH
31
4
HOH
HOH
31
B
HOH
33
4
HOH
HOH
33
B
HOH
36
4
HOH
HOH
36
B
HOH
37
4
HOH
HOH
37
B
HOH
39
4
HOH
HOH
39
B
HOH
40
4
HOH
HOH
40
B
HOH
42
4
HOH
HOH
42
B
HOH
43
4
HOH
HOH
43
B
HOH
44
4
HOH
HOH
44
B
HOH
45
4
HOH
HOH
45
B
HOH
47
4
HOH
HOH
47
B
HOH
53
4
HOH
HOH
53
B
HOH
54
4
HOH
HOH
54
B
HOH
55
4
HOH
HOH
55
B
HOH
56
4
HOH
HOH
56
B
HOH
57
4
HOH
HOH
57
B
HOH
64
4
HOH
HOH
64
B
HOH
65
4
HOH
HOH
65
B
HOH
67
4
HOH
HOH
67
B
HOH
68
4
HOH
HOH
68
B
HOH
69
4
HOH
HOH
69
B
HOH
71
4
HOH
HOH
71
B
HOH
72
4
HOH
HOH
72
B
HOH
78
4
HOH
HOH
78
B
HOH
79
4
HOH
HOH
79
B
HOH
80
4
HOH
HOH
80
B
HOH
83
4
HOH
HOH
83
B
HOH
84
4
HOH
HOH
84
B
HOH
85
4
HOH
HOH
85
B
HOH
86
4
HOH
HOH
86
B
HOH
87
4
HOH
HOH
87
B
HOH
91
4
HOH
HOH
91
B
HOH
92
4
HOH
HOH
92
B
HOH
95
4
HOH
HOH
95
B
HOH
97
4
HOH
HOH
97
B
HOH
98
4
HOH
HOH
98
B
HOH
101
4
HOH
HOH
101
B
HOH
102
4
HOH
HOH
102
B
HOH
103
4
HOH
HOH
103
B
HOH
106
4
HOH
HOH
106
B
HOH
107
4
HOH
HOH
107
B
HOH
108
4
HOH
HOH
108
B
HOH
111
4
HOH
HOH
111
B
HOH
112
4
HOH
HOH
112
B
HOH
114
4
HOH
HOH
114
B
HOH
115
4
HOH
HOH
115
B
HOH
116
4
HOH
HOH
116
B
HOH
120
4
HOH
HOH
120
B
HOH
125
4
HOH
HOH
125
B
HOH
127
4
HOH
HOH
127
B
HOH
129
4
HOH
HOH
129
B
HOH
130
4
HOH
HOH
130
B
HOH
131
4
HOH
HOH
131
B
HOH
132
4
HOH
HOH
132
B
HOH
134
4
HOH
HOH
134
B
HOH
137
4
HOH
HOH
137
B
HOH
138
4
HOH
HOH
138
B
HOH
139
4
HOH
HOH
139
B
HOH
140
4
HOH
HOH
140
B
HOH
142
4
HOH
HOH
142
B
HOH
143
4
HOH
HOH
143
B
HOH
144
4
HOH
HOH
144
B
HOH
145
4
HOH
HOH
145
B
HOH
146
4
HOH
HOH
146
B
HOH
148
4
HOH
HOH
148
B
HOH
150
4
HOH
HOH
150
B
HOH
151
4
HOH
HOH
151
B
HOH
154
4
HOH
HOH
154
B
HOH
155
4
HOH
HOH
155
B
HOH
156
4
HOH
HOH
156
B
HOH
157
4
HOH
HOH
157
B
HOH
158
4
HOH
HOH
158
B
HOH
159
4
HOH
HOH
159
B
HOH
163
4
HOH
HOH
163
B
HOH
164
4
HOH
HOH
164
B
HOH
165
4
HOH
HOH
165
B
HOH
166
4
HOH
HOH
166
B
HOH
167
4
HOH
HOH
167
B
HOH
168
4
HOH
HOH
168
B
HOH
169
4
HOH
HOH
169
B
HOH
170
4
HOH
HOH
170
B
HOH
171
4
HOH
HOH
171
B
HOH
172
4
HOH
HOH
172
B
HOH
173
4
HOH
HOH
173
B
HOH
175
4
HOH
HOH
175
B
HOH
176
4
HOH
HOH
176
B
HOH
178
4
HOH
HOH
178
B
HOH
179
4
HOH
HOH
179
B
HOH
180
4
HOH
HOH
180
B
HOH
181
4
HOH
HOH
181
B
HOH
182
4
HOH
HOH
182
B
HOH
184
4
HOH
HOH
184
B
HOH
187
4
HOH
HOH
187
B
HOH
188
4
HOH
HOH
188
B
HOH
189
4
HOH
HOH
189
B
HOH
194
4
HOH
HOH
194
B
HOH
196
4
HOH
HOH
196
B
HOH
197
4
HOH
HOH
197
B
HOH
198
4
HOH
HOH
198
B
HOH
200
4
HOH
HOH
200
B
HOH
202
4
HOH
HOH
202
B
HOH
203
4
HOH
HOH
203
B
HOH
204
4
HOH
HOH
204
B
HOH
205
4
HOH
HOH
205
B
HOH
210
4
HOH
HOH
210
B
HOH
212
4
HOH
HOH
212
B
HOH
213
4
HOH
HOH
213
B
HOH
221
4
HOH
HOH
221
B
HOH
224
4
HOH
HOH
224
B
HOH
228
4
HOH
HOH
228
B
HOH
229
4
HOH
HOH
229
B
HOH
234
4
HOH
HOH
234
B
HOH
236
4
HOH
HOH
236
B
HOH
238
4
HOH
HOH
238
B
HOH
245
4
HOH
HOH
245
B
HOH
254
4
HOH
HOH
254
B
DC
1
n
1
DC
1
A
C38
2
n
2
C38
2
A
DA
3
n
3
DA
3
A
DG
4
n
4
DG
4
A
DT
5
n
5
DT
5
A
DA
6
n
6
DA
6
A
DC
7
n
7
DC
7
A
DT
8
n
8
DT
8
A
DG
9
n
9
DG
9
A
DG
10
n
10
DG
10
A
DC
1
n
1
DC
1
B
C38
2
n
2
C38
2
B
DA
3
n
3
DA
3
B
DG
4
n
4
DG
4
B
DT
5
n
5
DT
5
B
DA
6
n
6
DA
6
B
DC
7
n
7
DC
7
B
DT
8
n
8
DT
8
B
DG
9
n
9
DG
9
B
DG
10
n
10
DG
10
B
author_and_software_defined_assembly
PISA
2
dimeric
2750
-7
3720
A
HOH
32
H
O
HOH
1_555
A
CA
300
A
D
CA
CA
1_555
A
HOH
34
H
O
HOH
1_555
91.0
A
HOH
32
H
O
HOH
1_555
A
CA
300
A
D
CA
CA
1_555
A
HOH
73
A
H
O
HOH
1_555
134.8
A
HOH
34
H
O
HOH
1_555
A
CA
300
A
D
CA
CA
1_555
A
HOH
73
A
H
O
HOH
1_555
70.9
A
HOH
32
H
O
HOH
1_555
A
CA
300
A
D
CA
CA
1_555
A
HOH
133
H
O
HOH
1_555
75.2
A
HOH
34
H
O
HOH
1_555
A
CA
300
A
D
CA
CA
1_555
A
HOH
133
H
O
HOH
1_555
118.1
A
HOH
73
A
H
O
HOH
1_555
A
CA
300
A
D
CA
CA
1_555
A
HOH
133
H
O
HOH
1_555
77.8
A
HOH
32
H
O
HOH
1_555
A
CA
300
A
D
CA
CA
1_555
A
HOH
161
A
H
O
HOH
1_555
61.1
A
HOH
34
H
O
HOH
1_555
A
CA
300
A
D
CA
CA
1_555
A
HOH
161
A
H
O
HOH
1_555
142.9
A
HOH
73
A
H
O
HOH
1_555
A
CA
300
A
D
CA
CA
1_555
A
HOH
161
A
H
O
HOH
1_555
146.1
A
HOH
133
H
O
HOH
1_555
A
CA
300
A
D
CA
CA
1_555
A
HOH
161
A
H
O
HOH
1_555
80.1
A
HOH
32
H
O
HOH
1_555
A
CA
301
B
E
CA
CA
1_555
A
HOH
34
H
O
HOH
1_555
98.9
A
HOH
32
H
O
HOH
1_555
A
CA
301
B
E
CA
CA
1_555
A
HOH
41
H
O
HOH
1_555
83.3
A
HOH
34
H
O
HOH
1_555
A
CA
301
B
E
CA
CA
1_555
A
HOH
41
H
O
HOH
1_555
92.0
A
HOH
32
H
O
HOH
1_555
A
CA
301
B
E
CA
CA
1_555
A
HOH
133
H
O
HOH
1_555
84.1
A
HOH
34
H
O
HOH
1_555
A
CA
301
B
E
CA
CA
1_555
A
HOH
133
H
O
HOH
1_555
173.2
A
HOH
41
H
O
HOH
1_555
A
CA
301
B
E
CA
CA
1_555
A
HOH
133
H
O
HOH
1_555
82.3
A
HOH
32
H
O
HOH
1_555
A
CA
301
B
E
CA
CA
1_555
A
HOH
161
B
H
O
HOH
1_555
81.6
A
HOH
34
H
O
HOH
1_555
A
CA
301
B
E
CA
CA
1_555
A
HOH
161
B
H
O
HOH
1_555
84.2
A
HOH
41
H
O
HOH
1_555
A
CA
301
B
E
CA
CA
1_555
A
HOH
161
B
H
O
HOH
1_555
163.6
A
HOH
133
H
O
HOH
1_555
A
CA
301
B
E
CA
CA
1_555
A
HOH
161
B
H
O
HOH
1_555
102.3
A
HOH
124
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
A
HOH
246
H
O
HOH
1_555
77.7
A
HOH
124
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
A
HOH
247
H
O
HOH
1_555
120.7
A
HOH
246
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
A
HOH
247
H
O
HOH
1_555
84.0
A
HOH
124
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
A
HOH
252
H
O
HOH
1_555
78.4
A
HOH
246
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
A
HOH
252
H
O
HOH
1_555
85.0
A
HOH
247
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
A
HOH
252
H
O
HOH
1_555
155.1
A
HOH
124
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
A
HOH
253
H
O
HOH
1_555
73.3
A
HOH
246
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
A
HOH
253
H
O
HOH
1_555
127.5
A
HOH
247
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
A
HOH
253
H
O
HOH
1_555
75.0
A
HOH
252
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
A
HOH
253
H
O
HOH
1_555
128.8
A
HOH
124
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
B
HOH
125
I
O
HOH
1_555
114.1
A
HOH
246
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
B
HOH
125
I
O
HOH
1_555
157.4
A
HOH
247
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
B
HOH
125
I
O
HOH
1_555
104.0
A
HOH
252
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
B
HOH
125
I
O
HOH
1_555
79.0
A
HOH
253
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
B
HOH
125
I
O
HOH
1_555
75.1
A
HOH
124
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
B
HOH
245
I
O
HOH
1_555
151.2
A
HOH
246
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
B
HOH
245
I
O
HOH
1_555
81.6
A
HOH
247
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
B
HOH
245
I
O
HOH
1_555
76.1
A
HOH
252
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
B
HOH
245
I
O
HOH
1_555
80.2
A
HOH
253
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
B
HOH
245
I
O
HOH
1_555
135.5
B
HOH
125
I
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
B
HOH
245
I
O
HOH
1_555
80.0
B
C38
2
B
O1P
C38
2
1_555
B
CA
303
G
CA
CA
1_555
B
HOH
45
I
O
HOH
1_555
85.1
B
C38
2
B
O1P
C38
2
1_555
B
CA
303
G
CA
CA
1_555
B
HOH
85
I
O
HOH
1_555
173.4
B
HOH
45
I
O
HOH
1_555
B
CA
303
G
CA
CA
1_555
B
HOH
85
I
O
HOH
1_555
88.8
A
C38
2
A
C38
2
DC
B
C38
2
B
C38
2
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
CA
303
G
CA
1
A
A
O6
O
DG
HOH
10
240
1.73
1
A
A
O5'
O
DC
HOH
1
242
1.82
1
A
A
O
O
HOH
HOH
100
242
1.88
1
A
A
O
O
HOH
HOH
239
243
2.02
1
A
A
N7
O
DG
HOH
10
240
2.07
1
B
B
OP2
O
DG
HOH
10
42
2.09
A
1
B
B
O
O
HOH
HOH
198
234
2.12
1
B
B
O
O
HOH
HOH
178
224
2.15
1
A
A
C6
O
DG
HOH
10
240
2.15
1
A
A
OP1
O
DT
HOH
5
152
2.16
A
1
A
A
O
O
HOH
HOH
239
240
2.18
1
B
B
O
O
HOH
HOH
114
224
2.19
1
A
DC
1
0.088
SIDE CHAIN
1
A
DG
4
A
0.081
SIDE CHAIN
1
A
DT
5
A
0.083
SIDE CHAIN
1
B
DC
1
0.105
SIDE CHAIN
1
B
DG
4
0.079
SIDE CHAIN
1
B
DT
5
A
0.082
SIDE CHAIN
1
-15.47
1.20
119.70
104.23
A
A
A
C3'
O3'
P
C38
C38
DA
2
2
3
B
Y
1
11.95
1.10
110.50
122.45
A
A
A
O3'
P
OP2
C38
DA
DA
2
3
3
B
B
Y
1
-10.87
1.80
114.10
103.23
A
A
A
C5'
C4'
C3'
DA
DA
DA
3
3
3
B
N
1
9.30
1.20
119.70
129.00
A
A
A
C3'
O3'
P
DA
DA
DG
3
3
4
B
Y
1
-9.99
0.80
109.40
99.41
A
A
A
O5'
C5'
C4'
DG
DG
DG
4
4
4
B
B
N
1
15.32
1.20
115.70
131.02
A
A
A
C5'
C4'
C3'
DG
DG
DG
4
4
4
B
N
1
11.72
1.20
119.70
131.42
A
A
A
C3'
O3'
P
DG
DG
DT
4
4
5
B
B
Y
1
-4.93
0.80
109.40
104.47
A
A
A
O5'
C5'
C4'
DT
DT
DT
5
5
5
A
A
N
1
8.65
1.20
115.70
124.35
A
A
A
C5'
C4'
C3'
DT
DT
DT
5
5
5
A
N
1
8.18
1.20
119.70
127.88
A
A
A
C3'
O3'
P
DC
DC
DT
7
7
8
B
B
Y
1
-3.60
0.40
104.50
100.90
B
B
B
O4'
C4'
C3'
DC
DC
DC
1
1
1
N
1
4.67
0.30
108.30
112.97
B
B
B
O4'
C1'
N9
DA
DA
DA
3
3
3
N
1
-18.37
2.50
109.70
91.33
B
B
B
C4'
C3'
O3'
DG
DG
DG
4
4
4
A
N
1
14.29
2.00
112.30
126.59
B
B
B
C4'
C3'
O3'
DG
DG
DG
4
4
4
B
N
1
17.51
1.20
119.70
137.21
B
B
B
C3'
O3'
P
DG
DG
DT
4
4
5
B
B
Y
1
-7.12
0.80
109.40
102.28
B
B
B
O5'
C5'
C4'
DT
DT
DT
5
5
5
A
A
N
1
10.83
1.20
115.70
126.53
B
B
B
C5'
C4'
C3'
DT
DT
DT
5
5
5
A
N
1
-6.08
1.00
110.10
104.02
B
B
B
C1'
O4'
C4'
DT
DT
DT
8
8
8
N
1
12.72
1.20
119.70
132.42
B
B
B
C3'
O3'
P
DT
DT
DG
8
8
9
A
Y
1
7.96
1.10
110.50
118.46
B
B
B
O3'
P
OP2
DT
DG
DG
8
9
9
B
B
Y
1
-7.94
0.80
109.40
101.46
B
B
B
O5'
C5'
C4'
DG
DG
DG
9
9
9
A
A
N
1
-3.69
0.50
104.30
100.61
B
B
B
C5
N7
C8
DG
DG
DG
9
9
9
N
1
3.54
0.50
113.10
116.64
B
B
B
N7
C8
N9
DG
DG
DG
9
9
9
N
1
-9.53
0.80
109.40
99.87
B
B
B
O5'
C5'
C4'
DG
DG
DG
10
10
10
B
B
N
1
A
A
O3'
P
C38
DA
2
3
0.179
0.012
1.607
1.786
B
Y
1
A
A
C5'
C4'
DA
DA
3
3
0.060
0.007
1.512
1.572
B
N
1
A
A
C5'
C4'
DG
DG
4
4
0.045
0.007
1.512
1.557
A
N
1
A
A
O3'
P
DG
DT
4
5
-0.092
0.012
1.607
1.515
A
A
Y
1
A
A
O3'
P
DG
DT
4
5
-0.090
0.012
1.607
1.517
B
B
Y
1
A
A
O3'
C3'
DC
DC
7
7
0.205
0.013
1.435
1.640
A
N
1
A
A
O3'
C3'
DC
DC
7
7
-0.139
0.006
1.419
1.280
B
N
1
A
A
C5'
C4'
DT
DT
8
8
0.043
0.007
1.512
1.555
B
N
1
B
B
O3'
C3'
DG
DG
4
4
0.214
0.013
1.435
1.649
A
N
1
B
B
O3'
C3'
DG
DG
4
4
-0.045
0.006
1.419
1.374
B
N
1
B
B
C5'
C4'
DT
DT
5
5
0.061
0.007
1.512
1.573
B
N
1
B
B
C5'
C4'
DG
DG
9
9
0.060
0.007
1.512
1.572
B
N
1
B
B
O3'
C3'
DG
DG
9
9
-0.117
0.006
1.419
1.302
A
N
1
B
B
O3'
C3'
DG
DG
9
9
0.131
0.013
1.435
1.566
B
N
1
B
B
C8
N9
DG
DG
9
9
-0.076
0.007
1.374
1.298
N
1
B
B
C5'
C4'
DG
DG
10
10
-0.086
0.011
1.509
1.423
A
N
1
B
B
C5'
C4'
DG
DG
10
10
0.093
0.007
1.512
1.605
B
N
1
A
B
O
O
HOH
HOH
162
224
1.92
1_555
6_464
12.059
0.12
0.00
0.00
0.12
0.00
-0.25
0.983
0.982
0.1237
0.1121
0.113
0.1127
0.95
23.44
2111
43176
41893
5.0
97.03
0.428
0.011
RANDOM
1
THROUGHOUT
AB INITIO PHASING
0.017
MAXIMUM LIKELIHOOD
BABINET MODEL PARAMETERS FOR MASK CACLULATION
0.95
23.44
237
733
90
406
0
0.286
0.258
0.979
149
2952
20
99.52
0.95
23.44
3OMJ
42494
41893
2.0
2.0
0.090
1
13.9
7.4
97.7
0.95
1.00
99.6
3.00
23.44
89.0
data collection
CrystalClear
phasing
SHELXS
refinement
REFMAC
5.2.0019
data reduction
MOSFLM
data scaling
SCALA
Structural Basis for Cyclic Py-Im Polyamide Allosteric Inhibition of Nuclear Receptor Binding
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
2
N
N
4
N
N
4
N
N
covale
1.584
both
A
DC
1
A
O3'
DC
1
1_555
A
C38
2
A
P
C38
2
1_555
covale
1.572
one
A
A
C38
2
A
O3'
C38
2
1_555
A
DA
3
A
P
DA
3
1_555
covale
1.786
one
B
A
C38
2
A
O3'
C38
2
1_555
A
DA
3
A
P
DA
3
1_555
covale
1.567
both
B
DC
1
B
O3'
DC
1
1_555
B
C38
2
B
P
C38
2
1_555
covale
1.579
one
B
C38
2
B
O3'
C38
2
1_555
B
DA
3
B
P
DA
3
1_555
metalc
2.323
A
A
HOH
32
H
O
HOH
1_555
A
CA
300
D
CA
CA
1_555
metalc
2.334
B
A
HOH
32
H
O
HOH
1_555
A
CA
301
E
CA
CA
1_555
metalc
2.539
A
A
HOH
34
H
O
HOH
1_555
A
CA
300
D
CA
CA
1_555
metalc
2.233
B
A
HOH
34
H
O
HOH
1_555
A
CA
301
E
CA
CA
1_555
metalc
2.494
B
A
HOH
41
H
O
HOH
1_555
A
CA
301
E
CA
CA
1_555
metalc
2.759
A
A
A
HOH
73
H
O
HOH
1_555
A
CA
300
D
CA
CA
1_555
metalc
2.429
A
HOH
124
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
metalc
2.720
A
A
HOH
133
H
O
HOH
1_555
A
CA
300
D
CA
CA
1_555
metalc
2.287
B
A
HOH
133
H
O
HOH
1_555
A
CA
301
E
CA
CA
1_555
metalc
2.168
A
A
A
HOH
161
H
O
HOH
1_555
A
CA
300
D
CA
CA
1_555
metalc
2.425
B
B
A
HOH
161
H
O
HOH
1_555
A
CA
301
E
CA
CA
1_555
metalc
2.393
A
HOH
246
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
metalc
2.365
A
HOH
247
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
metalc
2.438
A
HOH
252
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
metalc
2.425
A
HOH
253
H
O
HOH
1_555
A
CA
302
C
CA
CA
1_555
metalc
2.444
A
CA
302
C
CA
CA
1_555
B
HOH
125
I
O
HOH
1_555
metalc
2.449
A
CA
302
C
CA
CA
1_555
B
HOH
245
I
O
HOH
1_555
metalc
2.311
B
C38
2
B
O1P
C38
2
1_555
B
CA
303
G
CA
CA
1_555
metalc
2.301
B
HOH
45
I
O
HOH
1_555
B
CA
303
G
CA
CA
1_555
metalc
2.355
B
HOH
85
I
O
HOH
1_555
B
CA
303
G
CA
CA
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
10
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
10
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
10
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
C38
2
A
N3
C38
2
1_555
B
DG
9
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
C38
2
A
N4
C38
2
1_555
B
DG
9
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
C38
2
A
O2
C38
2
1_555
B
DG
9
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
8
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
8
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
7
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
7
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
7
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DT
5
A
N3
DT
5
1_555
B
DA
6
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
5
A
O4
DT
5
1_555
B
DA
6
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
5
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
5
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
B
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
B
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
B
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
3
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
3
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
C38
2
B
N3
C38
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
C38
2
B
O2
C38
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
C38
2
B
N4
C38
2
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
1
B
N4
DC
1
1_555
DNA
cyclic Py-Im polyamide, DNA
3OMJ
PDB
1
3OMJ
CCAGTACTGG
1
10
3OMJ
1
10
3OMJ
A
1
1
10
1
10
3OMJ
1
10
3OMJ
B
1
1
10
BINDING SITE FOR RESIDUE CA A 302
A
CA
302
Software
7
BINDING SITE FOR RESIDUE CA A 300
A
CA
300
Software
6
BINDING SITE FOR RESIDUE CA A 301
A
CA
301
Software
7
BINDING SITE FOR RESIDUE 1P2 B 500
B
1P2
500
Software
39
BINDING SITE FOR RESIDUE CA B 303
B
CA
303
Software
6
A
HOH
124
H
HOH
7
1_555
A
HOH
246
H
HOH
7
1_555
A
HOH
247
H
HOH
7
1_555
A
HOH
252
H
HOH
7
1_555
A
HOH
253
H
HOH
7
1_555
B
HOH
125
I
HOH
7
1_555
B
HOH
245
I
HOH
7
1_555
A
HOH
32
H
HOH
6
1_555
A
HOH
34
H
HOH
6
1_555
A
HOH
73
H
HOH
6
1_555
A
HOH
74
H
HOH
6
1_555
A
HOH
133
H
HOH
6
1_555
A
HOH
161
H
HOH
6
1_555
A
HOH
32
H
HOH
7
1_555
A
HOH
34
H
HOH
7
1_555
A
HOH
41
H
HOH
7
1_555
A
HOH
73
H
HOH
7
1_555
A
HOH
74
H
HOH
7
1_555
A
HOH
133
H
HOH
7
1_555
A
HOH
161
H
HOH
7
1_555
A
DC
1
A
DC
1
39
4_454
A
DG
4
A
DG
4
39
1_555
A
DT
5
A
DT
5
39
1_555
A
DA
6
A
DA
6
39
1_555
A
DC
7
A
DC
7
39
1_555
A
DT
8
A
DT
8
39
1_555
A
DG
9
A
DG
9
39
1_555
A
HOH
160
H
HOH
39
1_555
A
HOH
242
H
HOH
39
4_454
B
DC
1
B
DC
1
39
3_555
B
DG
4
B
DG
4
39
1_555
B
DT
5
B
DT
5
39
1_555
B
DA
6
B
DA
6
39
1_555
B
DC
7
B
DC
7
39
1_555
B
DT
8
B
DT
8
39
1_555
B
DG
9
B
DG
9
39
1_555
B
DG
10
B
DG
10
39
6_454
B
HOH
31
I
HOH
39
1_555
B
HOH
39
I
HOH
39
1_555
B
HOH
40
I
HOH
39
1_555
B
HOH
47
I
HOH
39
1_555
B
HOH
53
I
HOH
39
1_555
B
HOH
56
I
HOH
39
1_555
B
HOH
86
I
HOH
39
1_555
B
HOH
87
I
HOH
39
1_555
B
HOH
102
I
HOH
39
1_555
B
HOH
129
I
HOH
39
1_555
B
HOH
137
I
HOH
39
1_555
B
HOH
138
I
HOH
39
1_555
B
HOH
146
I
HOH
39
1_555
B
HOH
159
I
HOH
39
1_555
B
HOH
169
I
HOH
39
1_555
B
HOH
170
I
HOH
39
1_555
B
HOH
176
I
HOH
39
1_555
B
HOH
182
I
HOH
39
1_555
B
HOH
198
I
HOH
39
1_555
B
HOH
200
I
HOH
39
1_555
B
HOH
203
I
HOH
39
1_555
B
HOH
204
I
HOH
39
1_555
B
C38
2
B
C38
2
6
1_555
B
C38
2
B
C38
2
6
8_664
B
HOH
45
I
HOH
6
8_664
B
HOH
45
I
HOH
6
1_555
B
HOH
85
I
HOH
6
1_555
B
HOH
85
I
HOH
6
8_664
92
P 41 21 2