0.014019
0.008094
0.000000
0.000000
0.016188
0.000000
0.000000
0.000000
0.010736
0.00000
0.00000
0.00000
Wang, X.Q.
Xue, X.G.
Wang, D.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
71.330
71.330
93.141
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Plos Pathog.
1553-7366
7
e1002162
e1002162
10.1371/journal.ppat.1002162
21829356
Structural basis of chemokine sequestration by CrmD, a poxvirus-encoded tumor necrosis factor receptor
2011
10.2210/pdb3ona/pdb
pdb_00003ona
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-03-06
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.97000
1.0
BL17U
SSRF
0.97000
SYNCHROTRON
SSRF BEAMLINE BL17U
18012.010
Tumour necrosis factor receptor
SECRET domain, UNP residues 162-320
1
man
polymer
8971.408
CX3CL1 protein
chemokine domain, UNP residues 24-100
1
man
polymer
18.015
water
28
nat
water
CX3CL1
no
no
GAMGSFNSIDVEINMYPVNKTSCNSSIGSSSTISTSELTITLTHEDCTPVFIGDYYSVVDKLATSGFFTNDKVHQDLTTQ
CKINLEIKCNSGRESRQLTPTTKVYLMPHSETVTVVGDCLSNLDVYIVYANTDAIYSDMDVVAYHTSYILNVDHIPPNDC
ERD
GAMGSFNSIDVEINMYPVNKTSCNSSIGSSSTISTSELTITLTHEDCTPVFIGDYYSVVDKLATSGFFTNDKVHQDLTTQ
CKINLEIKCNSGRESRQLTPTTKVYLMPHSETVTVVGDCLSNLDVYIVYANTDAIYSDMDVVAYHTSYILNVDHIPPNDC
ERD
A
polypeptide(L)
no
no
GAMGQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNG
GAMGQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNG
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
crmD
12643
Ectromelia virus
562
Escherichia coli
plasmid
human
sample
9606
Homo sapiens
562
Escherichia coli
plasmid
1
2.53
51.48
VAPOR DIFFUSION, HANGING DROP
8.5
0.2M Li2SO4, 0.1M Tris.Cl, 20% PEG 4000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2011-08-17
1
1
2013-06-26
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
PDBJ
2010-08-28
REL
REL
HOH
water
3ON9
PDB ENTRIES 3ON9 AND 1F2L
PDB
experimental model
1F2L
PDB ENTRIES 3ON9 AND 1F2L
PDB
experimental model
HOH
1
3
HOH
HOH
1
A
HOH
2
3
HOH
HOH
2
A
HOH
3
3
HOH
HOH
3
A
HOH
4
3
HOH
HOH
4
A
HOH
6
3
HOH
HOH
6
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
27
3
HOH
HOH
27
A
HOH
5
3
HOH
HOH
77
B
HOH
7
3
HOH
HOH
78
B
HOH
8
3
HOH
HOH
79
B
HOH
16
3
HOH
HOH
80
B
HOH
17
3
HOH
HOH
81
B
HOH
20
3
HOH
HOH
82
B
HOH
26
3
HOH
HOH
83
B
HOH
28
3
HOH
HOH
84
B
n
1
158
A
n
2
159
A
n
3
160
A
GLY
161
n
4
GLY
161
A
SER
162
n
5
SER
162
A
PHE
163
n
6
PHE
163
A
ASN
164
n
7
ASN
164
A
SER
165
n
8
SER
165
A
ILE
166
n
9
ILE
166
A
ASP
167
n
10
ASP
167
A
VAL
168
n
11
VAL
168
A
GLU
169
n
12
GLU
169
A
ILE
170
n
13
ILE
170
A
ASN
171
n
14
ASN
171
A
MET
172
n
15
MET
172
A
TYR
173
n
16
TYR
173
A
PRO
174
n
17
PRO
174
A
VAL
175
n
18
VAL
175
A
ASN
176
n
19
ASN
176
A
LYS
177
n
20
LYS
177
A
THR
178
n
21
THR
178
A
SER
179
n
22
SER
179
A
CYS
180
n
23
CYS
180
A
ASN
181
n
24
ASN
181
A
SER
182
n
25
SER
182
A
SER
183
n
26
SER
183
A
ILE
184
n
27
ILE
184
A
GLY
185
n
28
GLY
185
A
SER
186
n
29
SER
186
A
SER
187
n
30
SER
187
A
SER
188
n
31
SER
188
A
THR
189
n
32
THR
189
A
ILE
190
n
33
ILE
190
A
SER
191
n
34
SER
191
A
THR
192
n
35
THR
192
A
SER
193
n
36
SER
193
A
GLU
194
n
37
GLU
194
A
LEU
195
n
38
LEU
195
A
THR
196
n
39
THR
196
A
ILE
197
n
40
ILE
197
A
THR
198
n
41
THR
198
A
LEU
199
n
42
LEU
199
A
THR
200
n
43
THR
200
A
HIS
201
n
44
HIS
201
A
GLU
202
n
45
GLU
202
A
ASP
203
n
46
ASP
203
A
CYS
204
n
47
CYS
204
A
THR
205
n
48
THR
205
A
PRO
206
n
49
PRO
206
A
VAL
207
n
50
VAL
207
A
PHE
208
n
51
PHE
208
A
ILE
209
n
52
ILE
209
A
GLY
210
n
53
GLY
210
A
ASP
211
n
54
ASP
211
A
TYR
212
n
55
TYR
212
A
TYR
213
n
56
TYR
213
A
SER
214
n
57
SER
214
A
VAL
215
n
58
VAL
215
A
VAL
216
n
59
VAL
216
A
ASP
217
n
60
ASP
217
A
LYS
218
n
61
LYS
218
A
LEU
219
n
62
LEU
219
A
ALA
220
n
63
ALA
220
A
THR
221
n
64
THR
221
A
SER
222
n
65
SER
222
A
GLY
223
n
66
GLY
223
A
PHE
224
n
67
PHE
224
A
PHE
225
n
68
PHE
225
A
THR
226
n
69
THR
226
A
ASN
227
n
70
ASN
227
A
ASP
228
n
71
ASP
228
A
LYS
229
n
72
LYS
229
A
VAL
230
n
73
VAL
230
A
HIS
231
n
74
HIS
231
A
GLN
232
n
75
GLN
232
A
ASP
233
n
76
ASP
233
A
LEU
234
n
77
LEU
234
A
THR
235
n
78
THR
235
A
THR
236
n
79
THR
236
A
GLN
237
n
80
GLN
237
A
CYS
238
n
81
CYS
238
A
LYS
239
n
82
LYS
239
A
ILE
240
n
83
ILE
240
A
ASN
241
n
84
ASN
241
A
LEU
242
n
85
LEU
242
A
GLU
243
n
86
GLU
243
A
ILE
244
n
87
ILE
244
A
LYS
245
n
88
LYS
245
A
CYS
246
n
89
CYS
246
A
ASN
247
n
90
ASN
247
A
SER
248
n
91
SER
248
A
GLY
249
n
92
GLY
249
A
ARG
250
n
93
ARG
250
A
GLU
251
n
94
GLU
251
A
SER
252
n
95
SER
252
A
ARG
253
n
96
ARG
253
A
GLN
254
n
97
GLN
254
A
LEU
255
n
98
LEU
255
A
THR
256
n
99
THR
256
A
PRO
257
n
100
PRO
257
A
THR
258
n
101
THR
258
A
THR
259
n
102
THR
259
A
LYS
260
n
103
LYS
260
A
VAL
261
n
104
VAL
261
A
TYR
262
n
105
TYR
262
A
LEU
263
n
106
LEU
263
A
MET
264
n
107
MET
264
A
PRO
265
n
108
PRO
265
A
HIS
266
n
109
HIS
266
A
SER
267
n
110
SER
267
A
GLU
268
n
111
GLU
268
A
THR
269
n
112
THR
269
A
VAL
270
n
113
VAL
270
A
THR
271
n
114
THR
271
A
VAL
272
n
115
VAL
272
A
VAL
273
n
116
VAL
273
A
GLY
274
n
117
GLY
274
A
ASP
275
n
118
ASP
275
A
CYS
276
n
119
CYS
276
A
LEU
277
n
120
LEU
277
A
SER
278
n
121
SER
278
A
ASN
279
n
122
ASN
279
A
LEU
280
n
123
LEU
280
A
ASP
281
n
124
ASP
281
A
VAL
282
n
125
VAL
282
A
TYR
283
n
126
TYR
283
A
ILE
284
n
127
ILE
284
A
VAL
285
n
128
VAL
285
A
TYR
286
n
129
TYR
286
A
ALA
287
n
130
ALA
287
A
ASN
288
n
131
ASN
288
A
THR
289
n
132
THR
289
A
ASP
290
n
133
ASP
290
A
ALA
291
n
134
ALA
291
A
ILE
292
n
135
ILE
292
A
TYR
293
n
136
TYR
293
A
SER
294
n
137
SER
294
A
ASP
295
n
138
ASP
295
A
MET
296
n
139
MET
296
A
ASP
297
n
140
ASP
297
A
VAL
298
n
141
VAL
298
A
VAL
299
n
142
VAL
299
A
ALA
300
n
143
ALA
300
A
TYR
301
n
144
TYR
301
A
HIS
302
n
145
HIS
302
A
THR
303
n
146
THR
303
A
SER
304
n
147
SER
304
A
TYR
305
n
148
TYR
305
A
ILE
306
n
149
ILE
306
A
LEU
307
n
150
LEU
307
A
ASN
308
n
151
ASN
308
A
VAL
309
n
152
VAL
309
A
ASP
310
n
153
ASP
310
A
HIS
311
n
154
HIS
311
A
ILE
312
n
155
ILE
312
A
PRO
313
n
156
PRO
313
A
PRO
314
n
157
PRO
314
A
ASN
315
n
158
ASN
315
A
ASP
316
n
159
ASP
316
A
CYS
317
n
160
CYS
317
A
GLU
318
n
161
GLU
318
A
n
162
319
A
n
163
320
A
n
1
-3
B
n
2
-2
B
n
3
-1
B
n
4
0
B
n
5
1
B
n
6
2
B
n
7
3
B
n
8
4
B
n
9
5
B
n
10
6
B
n
11
7
B
CYS
8
n
12
CYS
8
B
ASN
9
n
13
ASN
9
B
ILE
10
n
14
ILE
10
B
THR
11
n
15
THR
11
B
CYS
12
n
16
CYS
12
B
SER
13
n
17
SER
13
B
LYS
14
n
18
LYS
14
B
MET
15
n
19
MET
15
B
THR
16
n
20
THR
16
B
SER
17
n
21
SER
17
B
LYS
18
n
22
LYS
18
B
ILE
19
n
23
ILE
19
B
PRO
20
n
24
PRO
20
B
VAL
21
n
25
VAL
21
B
ALA
22
n
26
ALA
22
B
LEU
23
n
27
LEU
23
B
LEU
24
n
28
LEU
24
B
ILE
25
n
29
ILE
25
B
HIS
26
n
30
HIS
26
B
TYR
27
n
31
TYR
27
B
GLN
28
n
32
GLN
28
B
GLN
29
n
33
GLN
29
B
ASN
30
n
34
ASN
30
B
GLN
31
n
35
GLN
31
B
ALA
32
n
36
ALA
32
B
SER
33
n
37
SER
33
B
CYS
34
n
38
CYS
34
B
GLY
35
n
39
GLY
35
B
LYS
36
n
40
LYS
36
B
ARG
37
n
41
ARG
37
B
ALA
38
n
42
ALA
38
B
ILE
39
n
43
ILE
39
B
ILE
40
n
44
ILE
40
B
LEU
41
n
45
LEU
41
B
GLU
42
n
46
GLU
42
B
THR
43
n
47
THR
43
B
ARG
44
n
48
ARG
44
B
GLN
45
n
49
GLN
45
B
HIS
46
n
50
HIS
46
B
ARG
47
n
51
ARG
47
B
LEU
48
n
52
LEU
48
B
PHE
49
n
53
PHE
49
B
CYS
50
n
54
CYS
50
B
ALA
51
n
55
ALA
51
B
ASP
52
n
56
ASP
52
B
PRO
53
n
57
PRO
53
B
LYS
54
n
58
LYS
54
B
GLU
55
n
59
GLU
55
B
GLN
56
n
60
GLN
56
B
TRP
57
n
61
TRP
57
B
VAL
58
n
62
VAL
58
B
LYS
59
n
63
LYS
59
B
ASP
60
n
64
ASP
60
B
ALA
61
n
65
ALA
61
B
MET
62
n
66
MET
62
B
GLN
63
n
67
GLN
63
B
HIS
64
n
68
HIS
64
B
LEU
65
n
69
LEU
65
B
ASP
66
n
70
ASP
66
B
ARG
67
n
71
ARG
67
B
GLN
68
n
72
GLN
68
B
ALA
69
n
73
ALA
69
B
ALA
70
n
74
ALA
70
B
ALA
71
n
75
ALA
71
B
LEU
72
n
76
LEU
72
B
THR
73
n
77
THR
73
B
n
78
74
B
n
79
75
B
n
80
76
B
2.5016
0.4653
-0.3641
4.0854
0.3986
3.6319
-0.1293
0.2483
0.1148
-0.0680
0.1338
0.3761
-0.2636
-0.8333
0.0000
0.6583
-0.0874
0.0107
0.6687
-0.0879
0.6122
refined
19.0029
-12.9567
6.5494
X-RAY DIFFRACTION
2.6660
-0.2411
-1.1254
3.5269
1.1613
2.2269
-0.2488
-0.4634
-0.0142
1.1693
0.0966
-0.3473
-0.1196
0.6553
0.0001
0.7071
-0.0990
-0.0225
0.7267
0.0337
0.6579
refined
34.9930
-26.7368
-4.2512
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain A
X-RAY DIFFRACTION
2
chain B
author_and_software_defined_assembly
PISA
2
dimeric
1090
-4
11870
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
216
A
N
VAL
59
A
O
LEU
219
A
O
LEU
62
A
O
SER
222
A
O
SER
65
A
N
ILE
170
A
N
ILE
13
A
N
ASP
167
A
N
ASP
10
A
O
VAL
285
A
O
VAL
128
A
N
TYR
286
A
N
TYR
129
A
O
ASP
297
A
O
ASP
140
A
N
ASN
181
A
N
ASN
24
A
O
SER
191
A
O
SER
34
A
N
SER
188
A
N
SER
31
A
O
LEU
199
A
O
LEU
42
A
N
THR
200
A
N
THR
43
A
O
ASN
241
A
O
ASN
84
A
N
ILE
244
A
N
ILE
87
A
O
VAL
273
A
O
VAL
116
A
O
VAL
272
A
O
VAL
115
A
N
ARG
253
A
N
ARG
96
B
N
GLN
28
B
N
GLN
32
B
O
ILE
40
B
O
ILE
44
B
N
LEU
41
B
N
LEU
45
B
O
PHE
49
B
O
PHE
53
1
B
HOH
81
D
HOH
1
A
GLY
158
A
GLY
1
1
Y
1
A
ALA
159
A
ALA
2
1
Y
1
A
MET
160
A
MET
3
1
Y
1
A
ARG
319
A
ARG
162
1
Y
1
A
ASP
320
A
ASP
163
1
Y
1
B
GLY
-3
B
GLY
1
1
Y
1
B
ALA
-2
B
ALA
2
1
Y
1
B
MET
-1
B
MET
3
1
Y
1
B
GLY
0
B
GLY
4
1
Y
1
B
GLN
1
B
GLN
5
1
Y
1
B
HIS
2
B
HIS
6
1
Y
1
B
HIS
3
B
HIS
7
1
Y
1
B
GLY
4
B
GLY
8
1
Y
1
B
VAL
5
B
VAL
9
1
Y
1
B
THR
6
B
THR
10
1
Y
1
B
LYS
7
B
LYS
11
1
Y
1
B
ARG
74
B
ARG
78
1
Y
1
B
ASN
75
B
ASN
79
1
Y
1
B
GLY
76
B
GLY
80
1
Y
1
A
THR
192
-114.71
-169.83
1
A
TYR
213
-167.18
119.90
1
A
ASP
217
75.88
-120.64
1
A
ASN
227
-77.38
-165.87
1
A
SER
248
-110.95
74.74
1
A
ARG
250
-155.07
-65.11
1
A
LYS
260
165.11
157.70
1
A
SER
304
-179.75
-128.82
1
A
HIS
311
87.39
-15.20
1
B
SER
13
-87.97
-99.76
1
B
CYS
34
-53.53
-78.84
1
B
ALA
71
90.06
-56.34
1
B
LEU
72
-56.93
1.05
-1.0220
0.0000
-0.0000
-1.0220
0.0000
-17.7540
0.2497
0.1961
0.1986
2.60
29.317
393
8847
8262
4.76
93.62
1.79
random
1
0.06
MOLECULAR REPLACEMENT
0.90
1.11
PDB ENTRIES 3ON9 AND 1F2L
ML
FLAT BULK SOLVENT MODEL
72.036
0.354
2.60
29.317
28
1772
0
0
1744
0.010
1779
1.282
2413
18.876
634
0.076
289
0.004
307
0.3716
0.2783
2.9730
113
2349
85.00
0.2952
0.2026
3.7444
135
2646
96.00
0.2072
0.1730
29.3187
145
2874
99.00
2.6
50
3ONA
8839
8847
0
0
1
99.9
2.60
2.69
1
99.3
data collection
MAR345dtb
phasing
PHASER
refinement
PHENIX
(phenix.refine)
data reduction
DENZO
data scaling
SCALEPACK
The SECRET domain in complex with CX3CL1
1
N
N
2
N
N
3
N
N
3
N
N
B
PRO
20
B
PRO
24
HELX_P
B
ALA
22
B
ALA
26
5
1
3
B
GLU
55
B
GLU
59
HELX_P
B
ALA
70
B
ALA
74
1
2
16
disulf
2.048
A
CYS
180
A
SG
CYS
23
1_555
A
CYS
317
A
SG
CYS
160
1_555
disulf
2.062
A
CYS
204
A
SG
CYS
47
1_555
A
CYS
238
A
SG
CYS
81
1_555
disulf
2.027
A
CYS
246
A
SG
CYS
89
1_555
A
CYS
276
A
SG
CYS
119
1_555
disulf
2.046
B
CYS
8
B
SG
CYS
12
1_555
B
CYS
34
B
SG
CYS
38
1_555
disulf
2.041
B
CYS
12
B
SG
CYS
16
1_555
B
CYS
50
B
SG
CYS
54
1_555
VIRAL PROTEIN/CYTOKINE
beta-sandwich, chemokine fold, vTNFR-chemokine complex, VIRAL PROTEIN-CYTOKINE complex
A
TYR
173
A
TYR
16
1
A
PRO
174
A
PRO
17
-0.51
Q7TDW8_9POXV
UNP
1
162
Q7TDW8
SFNSIDVEINMYPVNKTSCNSSIGSSSTISTSELTITLTHEDCTPVFIGDYYSVVDKLATSGFFTNDKVHQDLTTQCKIN
LEIKCNSGRESRQLTPTTKVYLMPHSETVTVVGDCLSNLDVYIVYANTDAIYSDMDVVAYHTSYILNVDHIPPNDCERD
Q6I9S9_HUMAN
UNP
2
24
Q6I9S9
GQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNG
162
320
3ONA
162
320
Q7TDW8
A
1
5
163
24
100
3ONA
0
76
Q6I9S9
B
2
4
80
1
expression tag
GLY
158
3ONA
A
Q7TDW8
UNP
1
1
expression tag
ALA
159
3ONA
A
Q7TDW8
UNP
2
1
expression tag
MET
160
3ONA
A
Q7TDW8
UNP
3
1
expression tag
GLY
161
3ONA
A
Q7TDW8
UNP
4
2
expression tag
GLY
-3
3ONA
B
Q6I9S9
UNP
1
2
expression tag
ALA
-2
3ONA
B
Q6I9S9
UNP
2
2
expression tag
MET
-1
3ONA
B
Q6I9S9
UNP
3
5
6
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
208
A
PHE
51
A
VAL
216
A
VAL
59
A
LEU
219
A
LEU
62
A
THR
226
A
THR
69
A
SER
165
A
SER
8
A
TYR
173
A
TYR
16
A
ASN
279
A
ASN
122
A
ALA
287
A
ALA
130
A
MET
296
A
MET
139
A
HIS
302
A
HIS
145
A
ASN
181
A
ASN
24
A
SER
183
A
SER
26
A
SER
188
A
SER
31
A
SER
191
A
SER
34
A
LEU
195
A
LEU
38
A
GLU
202
A
GLU
45
A
LYS
239
A
LYS
82
A
CYS
246
A
CYS
89
A
SER
267
A
SER
110
A
VAL
273
A
VAL
116
A
SER
252
A
SER
95
A
GLN
254
A
GLN
97
B
LEU
24
B
LEU
28
B
GLN
29
B
GLN
33
B
ILE
39
B
ILE
43
B
THR
43
B
THR
47
B
ARG
47
B
ARG
51
B
ALA
51
B
ALA
55
154
P 32 2 1