0.013970
0.000000
0.000000
0.000000
0.011999
0.000000
0.000000
0.000000
0.005252
0.00000
0.00000
0.00000
Rudolph, M.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
71.580
83.340
190.420
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C28 H24 Cl F2 N3 O3
523.958
4-({(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylacetyl}amino)benzoic acid
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
Y
250
N
N
Y
251
N
C
Y
252
N
N
Y
253
N
C
Y
254
N
C
N
255
N
C
N
256
S
C
Y
257
N
C
Y
258
N
C
N
259
N
N
Y
260
N
C
Y
261
N
C
Y
262
N
C
N
263
N
C
N
264
N
O
Y
265
N
C
N
266
N
O
N
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
N
273
N
F
N
274
N
F
N
275
N
O
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
N
281
N
CL
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
R
C
N
370
N
O
N
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
N
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
N
420
N
O
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
C
N
439
N
C
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
Y
237
N
sing
Y
238
N
sing
N
239
N
sing
Y
240
N
doub
Y
241
N
sing
Y
242
N
sing
Y
243
N
doub
Y
244
N
sing
Y
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
Y
250
N
doub
Y
251
N
doub
N
252
N
sing
Y
253
N
sing
N
254
N
sing
Y
255
N
doub
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
N
263
N
sing
N
264
N
sing
Y
265
N
sing
Y
266
N
doub
Y
267
N
doub
Y
268
N
sing
Y
269
N
sing
Y
270
N
doub
Y
271
N
doub
Y
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
Y
313
N
doub
Y
314
N
sing
Y
315
N
sing
N
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
Y
410
N
doub
Y
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
21
1134
1140
10.1016/j.bmcl.2010.12.123
21269824
Optimization of a novel class of benzimidazole-based farnesoid X receptor (FXR) agonists to improve physicochemical and ADME properties
2011
10.2210/pdb3oof/pdb
pdb_00003oof
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2008-02-28
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.00000
1.0
X06SA
SLS
1.00000
SYNCHROTRON
SLS BEAMLINE X06SA
27100.191
Bile acid receptor
UNP RESIDUES 258-486
E281A, E354A
2
man
polymer
1790.026
peptide of Nuclear receptor coactivator 1
UNP RESIDUES 744-757
2
syn
polymer
523.958
4-({(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylacetyl}amino)benzoic acid
2
syn
non-polymer
18.015
water
149
nat
water
fxr, Farnesoid X-activated receptor, Farnesol receptor HRR-1, Nuclear receptor subfamily 1 group H member 4, Retinoid X receptor-interacting protein 14, RXR-interacting protein 14
NCoA-1, Class E basic helix-loop-helix protein 74, bHLHe74, Protein Hin-2, RIP160, Renal carcinoma antigen NY-REN-52, Steroid receptor coactivator 1, SRC-1
no
no
GSHMELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEAFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL
LKGSAVEAMFLRSAEIFNKKLPSGHSDLLEARIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIK
DREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ
GSHMELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEAFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL
LKGSAVEAMFLRSAEIFNKKLPSGHSDLLEARIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIK
DREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ
A,C
polypeptide(L)
no
no
KDHQLLRYLLDKDE
KDHQLLRYLLDKDE
B,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
NR1H4, HCG_20893
9606
Homo sapiens
562
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PET28A
1
2.46
49.95
VAPOR DIFFUSION, SITTING DROP
5.5
0.1M Bis-Tris pH 5.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-01-19
1
1
2011-07-13
1
2
2014-02-26
1
3
2017-11-08
1
4
2024-03-20
1
5
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2010-08-31
REL
REL
OOF
4-({(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylacetyl}amino)benzoic acid
HOH
water
THIS SEQUENCE OCCURS NATURALLY IN HUMANS
sample
INHOUSE
other
UNL
1
3
OOF
OOF
1
A
UNL
2
3
OOF
OOF
2
C
HOH
4
4
HOH
HOH
4
A
HOH
6
4
HOH
HOH
6
A
HOH
7
4
HOH
HOH
7
A
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
21
4
HOH
HOH
21
A
HOH
23
4
HOH
HOH
23
A
HOH
25
4
HOH
HOH
25
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
33
4
HOH
HOH
33
A
HOH
35
4
HOH
HOH
35
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
43
4
HOH
HOH
43
A
HOH
44
4
HOH
HOH
44
A
HOH
46
4
HOH
HOH
46
A
HOH
51
4
HOH
HOH
51
A
HOH
52
4
HOH
HOH
52
A
HOH
54
4
HOH
HOH
54
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
58
4
HOH
HOH
58
A
HOH
60
4
HOH
HOH
60
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
64
4
HOH
HOH
64
A
HOH
70
4
HOH
HOH
70
A
HOH
71
4
HOH
HOH
71
A
HOH
75
4
HOH
HOH
75
A
HOH
77
4
HOH
HOH
77
A
HOH
82
4
HOH
HOH
82
A
HOH
84
4
HOH
HOH
84
A
HOH
85
4
HOH
HOH
85
A
HOH
89
4
HOH
HOH
89
A
HOH
91
4
HOH
HOH
91
A
HOH
92
4
HOH
HOH
92
A
HOH
94
4
HOH
HOH
94
A
HOH
95
4
HOH
HOH
95
A
HOH
96
4
HOH
HOH
96
A
HOH
98
4
HOH
HOH
98
A
HOH
100
4
HOH
HOH
100
A
HOH
101
4
HOH
HOH
101
A
HOH
103
4
HOH
HOH
103
A
HOH
104
4
HOH
HOH
104
A
HOH
114
4
HOH
HOH
114
A
HOH
115
4
HOH
HOH
115
A
HOH
118
4
HOH
HOH
118
A
HOH
120
4
HOH
HOH
120
A
HOH
121
4
HOH
HOH
121
A
HOH
123
4
HOH
HOH
123
A
HOH
132
4
HOH
HOH
132
A
HOH
134
4
HOH
HOH
134
A
HOH
138
4
HOH
HOH
138
A
HOH
142
4
HOH
HOH
142
A
HOH
143
4
HOH
HOH
143
A
HOH
146
4
HOH
HOH
146
A
HOH
147
4
HOH
HOH
147
A
HOH
149
4
HOH
HOH
149
A
HOH
1
4
HOH
HOH
477
A
HOH
42
4
HOH
HOH
42
B
HOH
3
4
HOH
HOH
3
C
HOH
5
4
HOH
HOH
5
C
HOH
8
4
HOH
HOH
8
C
HOH
9
4
HOH
HOH
9
C
HOH
10
4
HOH
HOH
10
C
HOH
11
4
HOH
HOH
11
C
HOH
12
4
HOH
HOH
12
C
HOH
15
4
HOH
HOH
15
C
HOH
18
4
HOH
HOH
18
C
HOH
19
4
HOH
HOH
19
C
HOH
20
4
HOH
HOH
20
C
HOH
22
4
HOH
HOH
22
C
HOH
24
4
HOH
HOH
24
C
HOH
26
4
HOH
HOH
26
C
HOH
27
4
HOH
HOH
27
C
HOH
30
4
HOH
HOH
30
C
HOH
31
4
HOH
HOH
31
C
HOH
32
4
HOH
HOH
32
C
HOH
34
4
HOH
HOH
34
C
HOH
36
4
HOH
HOH
36
C
HOH
37
4
HOH
HOH
37
C
HOH
38
4
HOH
HOH
38
C
HOH
41
4
HOH
HOH
41
C
HOH
45
4
HOH
HOH
45
C
HOH
47
4
HOH
HOH
47
C
HOH
48
4
HOH
HOH
48
C
HOH
49
4
HOH
HOH
49
C
HOH
50
4
HOH
HOH
50
C
HOH
53
4
HOH
HOH
53
C
HOH
59
4
HOH
HOH
59
C
HOH
63
4
HOH
HOH
63
C
HOH
65
4
HOH
HOH
65
C
HOH
66
4
HOH
HOH
66
C
HOH
67
4
HOH
HOH
67
C
HOH
68
4
HOH
HOH
68
C
HOH
69
4
HOH
HOH
69
C
HOH
72
4
HOH
HOH
72
C
HOH
73
4
HOH
HOH
73
C
HOH
74
4
HOH
HOH
74
C
HOH
76
4
HOH
HOH
76
C
HOH
78
4
HOH
HOH
78
C
HOH
80
4
HOH
HOH
80
C
HOH
81
4
HOH
HOH
81
C
HOH
83
4
HOH
HOH
83
C
HOH
86
4
HOH
HOH
86
C
HOH
87
4
HOH
HOH
87
C
HOH
88
4
HOH
HOH
88
C
HOH
90
4
HOH
HOH
90
C
HOH
93
4
HOH
HOH
93
C
HOH
97
4
HOH
HOH
97
C
HOH
99
4
HOH
HOH
99
C
HOH
105
4
HOH
HOH
105
C
HOH
106
4
HOH
HOH
106
C
HOH
107
4
HOH
HOH
107
C
HOH
108
4
HOH
HOH
108
C
HOH
109
4
HOH
HOH
109
C
HOH
110
4
HOH
HOH
110
C
HOH
111
4
HOH
HOH
111
C
HOH
112
4
HOH
HOH
112
C
HOH
113
4
HOH
HOH
113
C
HOH
116
4
HOH
HOH
116
C
HOH
117
4
HOH
HOH
117
C
HOH
119
4
HOH
HOH
119
C
HOH
122
4
HOH
HOH
122
C
HOH
124
4
HOH
HOH
124
C
HOH
125
4
HOH
HOH
125
C
HOH
126
4
HOH
HOH
126
C
HOH
127
4
HOH
HOH
127
C
HOH
128
4
HOH
HOH
128
C
HOH
129
4
HOH
HOH
129
C
HOH
130
4
HOH
HOH
130
C
HOH
131
4
HOH
HOH
131
C
HOH
133
4
HOH
HOH
133
C
HOH
135
4
HOH
HOH
135
C
HOH
136
4
HOH
HOH
136
C
HOH
137
4
HOH
HOH
137
C
HOH
139
4
HOH
HOH
139
C
HOH
140
4
HOH
HOH
140
C
HOH
141
4
HOH
HOH
141
C
HOH
144
4
HOH
HOH
144
C
HOH
145
4
HOH
HOH
145
C
HOH
148
4
HOH
HOH
148
C
HOH
2
4
HOH
HOH
477
C
HOH
55
4
HOH
HOH
55
D
HOH
79
4
HOH
HOH
79
D
HOH
102
4
HOH
HOH
102
D
n
1
244
A
n
2
245
A
n
3
246
A
MET
247
n
4
MET
247
A
GLU
248
n
5
GLU
248
A
LEU
249
n
6
LEU
249
A
THR
250
n
7
THR
250
A
PRO
251
n
8
PRO
251
A
ASP
252
n
9
ASP
252
A
GLN
253
n
10
GLN
253
A
GLN
254
n
11
GLN
254
A
THR
255
n
12
THR
255
A
LEU
256
n
13
LEU
256
A
LEU
257
n
14
LEU
257
A
HIS
258
n
15
HIS
258
A
PHE
259
n
16
PHE
259
A
ILE
260
n
17
ILE
260
A
MET
261
n
18
MET
261
A
ASP
262
n
19
ASP
262
A
SER
263
n
20
SER
263
A
TYR
264
n
21
TYR
264
A
ASN
265
n
22
ASN
265
A
LYS
266
n
23
LYS
266
A
GLN
267
n
24
GLN
267
A
ARG
268
n
25
ARG
268
A
MET
269
n
26
MET
269
A
PRO
270
n
27
PRO
270
A
GLN
271
n
28
GLN
271
A
GLU
272
n
29
GLU
272
A
ILE
273
n
30
ILE
273
A
THR
274
n
31
THR
274
A
ASN
275
n
32
ASN
275
A
LYS
276
n
33
LYS
276
A
ILE
277
n
34
ILE
277
A
LEU
278
n
35
LEU
278
A
LYS
279
n
36
LYS
279
A
GLU
280
n
37
GLU
280
A
ALA
281
n
38
ALA
281
A
PHE
282
n
39
PHE
282
A
SER
283
n
40
SER
283
A
ALA
284
n
41
ALA
284
A
GLU
285
n
42
GLU
285
A
GLU
286
n
43
GLU
286
A
ASN
287
n
44
ASN
287
A
PHE
288
n
45
PHE
288
A
LEU
289
n
46
LEU
289
A
ILE
290
n
47
ILE
290
A
LEU
291
n
48
LEU
291
A
THR
292
n
49
THR
292
A
GLU
293
n
50
GLU
293
A
MET
294
n
51
MET
294
A
ALA
295
n
52
ALA
295
A
THR
296
n
53
THR
296
A
ASN
297
n
54
ASN
297
A
HIS
298
n
55
HIS
298
A
VAL
299
n
56
VAL
299
A
GLN
300
n
57
GLN
300
A
VAL
301
n
58
VAL
301
A
LEU
302
n
59
LEU
302
A
VAL
303
n
60
VAL
303
A
GLU
304
n
61
GLU
304
A
PHE
305
n
62
PHE
305
A
THR
306
n
63
THR
306
A
LYS
307
n
64
LYS
307
A
LYS
308
n
65
LYS
308
A
LEU
309
n
66
LEU
309
A
PRO
310
n
67
PRO
310
A
GLY
311
n
68
GLY
311
A
PHE
312
n
69
PHE
312
A
GLN
313
n
70
GLN
313
A
THR
314
n
71
THR
314
A
LEU
315
n
72
LEU
315
A
ASP
316
n
73
ASP
316
A
HIS
317
n
74
HIS
317
A
GLU
318
n
75
GLU
318
A
ASP
319
n
76
ASP
319
A
GLN
320
n
77
GLN
320
A
ILE
321
n
78
ILE
321
A
ALA
322
n
79
ALA
322
A
LEU
323
n
80
LEU
323
A
LEU
324
n
81
LEU
324
A
LYS
325
n
82
LYS
325
A
GLY
326
n
83
GLY
326
A
SER
327
n
84
SER
327
A
ALA
328
n
85
ALA
328
A
VAL
329
n
86
VAL
329
A
GLU
330
n
87
GLU
330
A
ALA
331
n
88
ALA
331
A
MET
332
n
89
MET
332
A
PHE
333
n
90
PHE
333
A
LEU
334
n
91
LEU
334
A
ARG
335
n
92
ARG
335
A
SER
336
n
93
SER
336
A
ALA
337
n
94
ALA
337
A
GLU
338
n
95
GLU
338
A
ILE
339
n
96
ILE
339
A
PHE
340
n
97
PHE
340
A
ASN
341
n
98
ASN
341
A
LYS
342
n
99
LYS
342
A
LYS
343
n
100
LYS
343
A
LEU
344
n
101
LEU
344
A
PRO
345
n
102
PRO
345
A
SER
346
n
103
SER
346
A
GLY
347
n
104
GLY
347
A
HIS
348
n
105
HIS
348
A
SER
349
n
106
SER
349
A
ASP
350
n
107
ASP
350
A
LEU
351
n
108
LEU
351
A
LEU
352
n
109
LEU
352
A
GLU
353
n
110
GLU
353
A
ALA
354
n
111
ALA
354
A
ARG
355
n
112
ARG
355
A
ILE
356
n
113
ILE
356
A
ARG
357
n
114
ARG
357
A
ASN
358
n
115
ASN
358
A
SER
359
n
116
SER
359
A
GLY
360
n
117
GLY
360
A
ILE
361
n
118
ILE
361
A
SER
362
n
119
SER
362
A
ASP
363
n
120
ASP
363
A
GLU
364
n
121
GLU
364
A
TYR
365
n
122
TYR
365
A
ILE
366
n
123
ILE
366
A
THR
367
n
124
THR
367
A
PRO
368
n
125
PRO
368
A
MET
369
n
126
MET
369
A
PHE
370
n
127
PHE
370
A
SER
371
n
128
SER
371
A
PHE
372
n
129
PHE
372
A
TYR
373
n
130
TYR
373
A
LYS
374
n
131
LYS
374
A
SER
375
n
132
SER
375
A
ILE
376
n
133
ILE
376
A
GLY
377
n
134
GLY
377
A
GLU
378
n
135
GLU
378
A
LEU
379
n
136
LEU
379
A
LYS
380
n
137
LYS
380
A
MET
381
n
138
MET
381
A
THR
382
n
139
THR
382
A
GLN
383
n
140
GLN
383
A
GLU
384
n
141
GLU
384
A
GLU
385
n
142
GLU
385
A
TYR
386
n
143
TYR
386
A
ALA
387
n
144
ALA
387
A
LEU
388
n
145
LEU
388
A
LEU
389
n
146
LEU
389
A
THR
390
n
147
THR
390
A
ALA
391
n
148
ALA
391
A
ILE
392
n
149
ILE
392
A
VAL
393
n
150
VAL
393
A
ILE
394
n
151
ILE
394
A
LEU
395
n
152
LEU
395
A
SER
396
n
153
SER
396
A
PRO
397
n
154
PRO
397
A
ASP
398
n
155
ASP
398
A
ARG
399
n
156
ARG
399
A
GLN
400
n
157
GLN
400
A
TYR
401
n
158
TYR
401
A
ILE
402
n
159
ILE
402
A
LYS
403
n
160
LYS
403
A
ASP
404
n
161
ASP
404
A
ARG
405
n
162
ARG
405
A
GLU
406
n
163
GLU
406
A
ALA
407
n
164
ALA
407
A
VAL
408
n
165
VAL
408
A
GLU
409
n
166
GLU
409
A
LYS
410
n
167
LYS
410
A
LEU
411
n
168
LEU
411
A
GLN
412
n
169
GLN
412
A
GLU
413
n
170
GLU
413
A
PRO
414
n
171
PRO
414
A
LEU
415
n
172
LEU
415
A
LEU
416
n
173
LEU
416
A
ASP
417
n
174
ASP
417
A
VAL
418
n
175
VAL
418
A
LEU
419
n
176
LEU
419
A
GLN
420
n
177
GLN
420
A
LYS
421
n
178
LYS
421
A
LEU
422
n
179
LEU
422
A
CYS
423
n
180
CYS
423
A
LYS
424
n
181
LYS
424
A
ILE
425
n
182
ILE
425
A
HIS
426
n
183
HIS
426
A
GLN
427
n
184
GLN
427
A
PRO
428
n
185
PRO
428
A
GLU
429
n
186
GLU
429
A
ASN
430
n
187
ASN
430
A
PRO
431
n
188
PRO
431
A
GLN
432
n
189
GLN
432
A
HIS
433
n
190
HIS
433
A
PHE
434
n
191
PHE
434
A
ALA
435
n
192
ALA
435
A
CYS
436
n
193
CYS
436
A
LEU
437
n
194
LEU
437
A
LEU
438
n
195
LEU
438
A
GLY
439
n
196
GLY
439
A
ARG
440
n
197
ARG
440
A
LEU
441
n
198
LEU
441
A
THR
442
n
199
THR
442
A
GLU
443
n
200
GLU
443
A
LEU
444
n
201
LEU
444
A
ARG
445
n
202
ARG
445
A
THR
446
n
203
THR
446
A
PHE
447
n
204
PHE
447
A
ASN
448
n
205
ASN
448
A
HIS
449
n
206
HIS
449
A
HIS
450
n
207
HIS
450
A
HIS
451
n
208
HIS
451
A
ALA
452
n
209
ALA
452
A
GLU
453
n
210
GLU
453
A
MET
454
n
211
MET
454
A
LEU
455
n
212
LEU
455
A
MET
456
n
213
MET
456
A
SER
457
n
214
SER
457
A
TRP
458
n
215
TRP
458
A
ARG
459
n
216
ARG
459
A
VAL
460
n
217
VAL
460
A
ASN
461
n
218
ASN
461
A
ASP
462
n
219
ASP
462
A
HIS
463
n
220
HIS
463
A
LYS
464
n
221
LYS
464
A
PHE
465
n
222
PHE
465
A
THR
466
n
223
THR
466
A
PRO
467
n
224
PRO
467
A
LEU
468
n
225
LEU
468
A
LEU
469
n
226
LEU
469
A
CYS
470
n
227
CYS
470
A
GLU
471
n
228
GLU
471
A
ILE
472
n
229
ILE
472
A
TRP
473
n
230
TRP
473
A
ASP
474
n
231
ASP
474
A
VAL
475
n
232
VAL
475
A
GLN
476
n
233
GLN
476
A
n
1
744
B
ASP
745
n
2
ASP
745
B
HIS
746
n
3
HIS
746
B
GLN
747
n
4
GLN
747
B
LEU
748
n
5
LEU
748
B
LEU
749
n
6
LEU
749
B
ARG
750
n
7
ARG
750
B
TYR
751
n
8
TYR
751
B
LEU
752
n
9
LEU
752
B
LEU
753
n
10
LEU
753
B
ASP
754
n
11
ASP
754
B
LYS
755
n
12
LYS
755
B
ASP
756
n
13
ASP
756
B
n
14
757
B
n
1
244
C
n
2
245
C
n
3
246
C
MET
247
n
4
MET
247
C
GLU
248
n
5
GLU
248
C
LEU
249
n
6
LEU
249
C
THR
250
n
7
THR
250
C
PRO
251
n
8
PRO
251
C
ASP
252
n
9
ASP
252
C
GLN
253
n
10
GLN
253
C
GLN
254
n
11
GLN
254
C
THR
255
n
12
THR
255
C
LEU
256
n
13
LEU
256
C
LEU
257
n
14
LEU
257
C
HIS
258
n
15
HIS
258
C
PHE
259
n
16
PHE
259
C
ILE
260
n
17
ILE
260
C
MET
261
n
18
MET
261
C
ASP
262
n
19
ASP
262
C
SER
263
n
20
SER
263
C
TYR
264
n
21
TYR
264
C
ASN
265
n
22
ASN
265
C
LYS
266
n
23
LYS
266
C
GLN
267
n
24
GLN
267
C
ARG
268
n
25
ARG
268
C
MET
269
n
26
MET
269
C
PRO
270
n
27
PRO
270
C
GLN
271
n
28
GLN
271
C
GLU
272
n
29
GLU
272
C
ILE
273
n
30
ILE
273
C
THR
274
n
31
THR
274
C
ASN
275
n
32
ASN
275
C
LYS
276
n
33
LYS
276
C
ILE
277
n
34
ILE
277
C
LEU
278
n
35
LEU
278
C
LYS
279
n
36
LYS
279
C
GLU
280
n
37
GLU
280
C
ALA
281
n
38
ALA
281
C
PHE
282
n
39
PHE
282
C
SER
283
n
40
SER
283
C
ALA
284
n
41
ALA
284
C
GLU
285
n
42
GLU
285
C
GLU
286
n
43
GLU
286
C
ASN
287
n
44
ASN
287
C
PHE
288
n
45
PHE
288
C
LEU
289
n
46
LEU
289
C
ILE
290
n
47
ILE
290
C
LEU
291
n
48
LEU
291
C
THR
292
n
49
THR
292
C
GLU
293
n
50
GLU
293
C
MET
294
n
51
MET
294
C
ALA
295
n
52
ALA
295
C
THR
296
n
53
THR
296
C
ASN
297
n
54
ASN
297
C
HIS
298
n
55
HIS
298
C
VAL
299
n
56
VAL
299
C
GLN
300
n
57
GLN
300
C
VAL
301
n
58
VAL
301
C
LEU
302
n
59
LEU
302
C
VAL
303
n
60
VAL
303
C
GLU
304
n
61
GLU
304
C
PHE
305
n
62
PHE
305
C
THR
306
n
63
THR
306
C
LYS
307
n
64
LYS
307
C
LYS
308
n
65
LYS
308
C
LEU
309
n
66
LEU
309
C
PRO
310
n
67
PRO
310
C
GLY
311
n
68
GLY
311
C
PHE
312
n
69
PHE
312
C
GLN
313
n
70
GLN
313
C
THR
314
n
71
THR
314
C
LEU
315
n
72
LEU
315
C
ASP
316
n
73
ASP
316
C
HIS
317
n
74
HIS
317
C
GLU
318
n
75
GLU
318
C
ASP
319
n
76
ASP
319
C
GLN
320
n
77
GLN
320
C
ILE
321
n
78
ILE
321
C
ALA
322
n
79
ALA
322
C
LEU
323
n
80
LEU
323
C
LEU
324
n
81
LEU
324
C
LYS
325
n
82
LYS
325
C
GLY
326
n
83
GLY
326
C
SER
327
n
84
SER
327
C
ALA
328
n
85
ALA
328
C
VAL
329
n
86
VAL
329
C
GLU
330
n
87
GLU
330
C
ALA
331
n
88
ALA
331
C
MET
332
n
89
MET
332
C
PHE
333
n
90
PHE
333
C
LEU
334
n
91
LEU
334
C
ARG
335
n
92
ARG
335
C
SER
336
n
93
SER
336
C
ALA
337
n
94
ALA
337
C
GLU
338
n
95
GLU
338
C
ILE
339
n
96
ILE
339
C
PHE
340
n
97
PHE
340
C
ASN
341
n
98
ASN
341
C
LYS
342
n
99
LYS
342
C
LYS
343
n
100
LYS
343
C
LEU
344
n
101
LEU
344
C
PRO
345
n
102
PRO
345
C
SER
346
n
103
SER
346
C
GLY
347
n
104
GLY
347
C
HIS
348
n
105
HIS
348
C
SER
349
n
106
SER
349
C
ASP
350
n
107
ASP
350
C
LEU
351
n
108
LEU
351
C
LEU
352
n
109
LEU
352
C
GLU
353
n
110
GLU
353
C
ALA
354
n
111
ALA
354
C
ARG
355
n
112
ARG
355
C
ILE
356
n
113
ILE
356
C
ARG
357
n
114
ARG
357
C
ASN
358
n
115
ASN
358
C
SER
359
n
116
SER
359
C
GLY
360
n
117
GLY
360
C
ILE
361
n
118
ILE
361
C
SER
362
n
119
SER
362
C
ASP
363
n
120
ASP
363
C
GLU
364
n
121
GLU
364
C
TYR
365
n
122
TYR
365
C
ILE
366
n
123
ILE
366
C
THR
367
n
124
THR
367
C
PRO
368
n
125
PRO
368
C
MET
369
n
126
MET
369
C
PHE
370
n
127
PHE
370
C
SER
371
n
128
SER
371
C
PHE
372
n
129
PHE
372
C
TYR
373
n
130
TYR
373
C
LYS
374
n
131
LYS
374
C
SER
375
n
132
SER
375
C
ILE
376
n
133
ILE
376
C
GLY
377
n
134
GLY
377
C
GLU
378
n
135
GLU
378
C
LEU
379
n
136
LEU
379
C
LYS
380
n
137
LYS
380
C
MET
381
n
138
MET
381
C
THR
382
n
139
THR
382
C
GLN
383
n
140
GLN
383
C
GLU
384
n
141
GLU
384
C
GLU
385
n
142
GLU
385
C
TYR
386
n
143
TYR
386
C
ALA
387
n
144
ALA
387
C
LEU
388
n
145
LEU
388
C
LEU
389
n
146
LEU
389
C
THR
390
n
147
THR
390
C
ALA
391
n
148
ALA
391
C
ILE
392
n
149
ILE
392
C
VAL
393
n
150
VAL
393
C
ILE
394
n
151
ILE
394
C
LEU
395
n
152
LEU
395
C
SER
396
n
153
SER
396
C
PRO
397
n
154
PRO
397
C
ASP
398
n
155
ASP
398
C
ARG
399
n
156
ARG
399
C
GLN
400
n
157
GLN
400
C
TYR
401
n
158
TYR
401
C
ILE
402
n
159
ILE
402
C
LYS
403
n
160
LYS
403
C
ASP
404
n
161
ASP
404
C
ARG
405
n
162
ARG
405
C
GLU
406
n
163
GLU
406
C
ALA
407
n
164
ALA
407
C
VAL
408
n
165
VAL
408
C
GLU
409
n
166
GLU
409
C
LYS
410
n
167
LYS
410
C
LEU
411
n
168
LEU
411
C
GLN
412
n
169
GLN
412
C
GLU
413
n
170
GLU
413
C
PRO
414
n
171
PRO
414
C
LEU
415
n
172
LEU
415
C
LEU
416
n
173
LEU
416
C
ASP
417
n
174
ASP
417
C
VAL
418
n
175
VAL
418
C
LEU
419
n
176
LEU
419
C
GLN
420
n
177
GLN
420
C
LYS
421
n
178
LYS
421
C
LEU
422
n
179
LEU
422
C
CYS
423
n
180
CYS
423
C
LYS
424
n
181
LYS
424
C
ILE
425
n
182
ILE
425
C
HIS
426
n
183
HIS
426
C
GLN
427
n
184
GLN
427
C
PRO
428
n
185
PRO
428
C
GLU
429
n
186
GLU
429
C
ASN
430
n
187
ASN
430
C
PRO
431
n
188
PRO
431
C
GLN
432
n
189
GLN
432
C
HIS
433
n
190
HIS
433
C
PHE
434
n
191
PHE
434
C
ALA
435
n
192
ALA
435
C
CYS
436
n
193
CYS
436
C
LEU
437
n
194
LEU
437
C
LEU
438
n
195
LEU
438
C
GLY
439
n
196
GLY
439
C
ARG
440
n
197
ARG
440
C
LEU
441
n
198
LEU
441
C
THR
442
n
199
THR
442
C
GLU
443
n
200
GLU
443
C
LEU
444
n
201
LEU
444
C
ARG
445
n
202
ARG
445
C
THR
446
n
203
THR
446
C
PHE
447
n
204
PHE
447
C
ASN
448
n
205
ASN
448
C
HIS
449
n
206
HIS
449
C
HIS
450
n
207
HIS
450
C
HIS
451
n
208
HIS
451
C
ALA
452
n
209
ALA
452
C
GLU
453
n
210
GLU
453
C
MET
454
n
211
MET
454
C
LEU
455
n
212
LEU
455
C
MET
456
n
213
MET
456
C
SER
457
n
214
SER
457
C
TRP
458
n
215
TRP
458
C
ARG
459
n
216
ARG
459
C
VAL
460
n
217
VAL
460
C
ASN
461
n
218
ASN
461
C
ASP
462
n
219
ASP
462
C
HIS
463
n
220
HIS
463
C
LYS
464
n
221
LYS
464
C
PHE
465
n
222
PHE
465
C
THR
466
n
223
THR
466
C
PRO
467
n
224
PRO
467
C
LEU
468
n
225
LEU
468
C
LEU
469
n
226
LEU
469
C
CYS
470
n
227
CYS
470
C
GLU
471
n
228
GLU
471
C
ILE
472
n
229
ILE
472
C
TRP
473
n
230
TRP
473
C
ASP
474
n
231
ASP
474
C
VAL
475
n
232
VAL
475
C
ALA
476
n
233
GLN
476
C
LYS
744
n
1
LYS
744
D
ASP
745
n
2
ASP
745
D
HIS
746
n
3
HIS
746
D
GLN
747
n
4
GLN
747
D
LEU
748
n
5
LEU
748
D
LEU
749
n
6
LEU
749
D
ARG
750
n
7
ARG
750
D
TYR
751
n
8
TYR
751
D
LEU
752
n
9
LEU
752
D
LEU
753
n
10
LEU
753
D
ASP
754
n
11
ASP
754
D
LYS
755
n
12
LYS
755
D
ASP
756
n
13
ASP
756
D
n
14
757
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
1080
-8
12600
1190
-6
12590
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
C
CG
GLN
476
C
CG
GLN
233
1
Y
1
C
CD
GLN
476
C
CD
GLN
233
1
Y
1
C
OE1
GLN
476
C
OE1
GLN
233
1
Y
1
C
NE2
GLN
476
C
NE2
GLN
233
1
Y
1
A
GLY
244
A
GLY
1
1
Y
1
A
SER
245
A
SER
2
1
Y
1
A
HIS
246
A
HIS
3
1
Y
1
B
LYS
744
B
LYS
1
1
Y
1
B
GLU
757
B
GLU
14
1
Y
1
C
GLY
244
C
GLY
1
1
Y
1
C
SER
245
C
SER
2
1
Y
1
C
HIS
246
C
HIS
3
1
Y
1
D
GLU
757
D
GLU
14
1
Y
1
A
A
OD1
O
ASN
HOH
430
149
2.09
1
A
LYS
266
-66.49
0.61
1
A
SER
346
-31.48
131.86
1
A
TYR
401
85.76
2.84
1
A
ASN
430
-152.26
89.09
1
A
ARG
459
-66.80
74.86
1
C
SER
346
-38.98
129.39
1
C
LEU
395
-91.05
43.56
1
C
TYR
401
85.78
2.85
1
C
HIS
463
-112.59
79.66
1
D
HIS
746
-158.26
71.95
48.03
5.7788
0.0000
0.0000
-7.7766
0.0000
1.9978
0.9462
0.9127
0.2548
0.1954
0.1985
2.29
26.82
1271
25491
4.99
97.90
0.313
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.32
0.24
0.24
INHOUSE
0.322
2.29
26.82
149
4204
74
0
3981
1490
SINUSOIDAL
2.000
119
HARMONIC
2.000
575
HARMONIC
5.000
4145
HARMONIC
20.000
531
SEMIHARMONIC
5.000
5028
SEMIHARMONIC
4.000
0.010
4145
HARMONIC
2.000
1.130
5602
HARMONIC
2.000
2.620
20.090
0.4104
0.3753
0.3771
2.38
123
2411
2534
13
4.85
97.90
43.52
2.29
47.60
3OOF
25551
0.0733
0.0733
1
13.99
5.99
97.5
0.5799
2.29
2.39
1.99
0.5799
1
3.54
84.8
phasing
PHASER
refinement
BUSTER
2.9.5
data reduction
XDS
(VERSION December 6
data scaling
SADABS
Crystal structure of human FXR in complex with 4-({(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylacetyl}amino)benzoic acid
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
THR
250
A
THR
7
HELX_P
A
LYS
266
A
LYS
23
1
1
17
A
MET
269
A
MET
26
HELX_P
A
GLU
280
A
GLU
37
1
2
12
A
SER
283
A
SER
40
HELX_P
A
LYS
308
A
LYS
65
1
3
26
A
GLY
311
A
GLY
68
HELX_P
A
LEU
315
A
LEU
72
5
4
5
A
ASP
316
A
ASP
73
HELX_P
A
ASN
341
A
ASN
98
1
5
26
A
GLY
347
A
GLY
104
HELX_P
A
SER
359
A
SER
116
1
6
13
A
SER
362
A
SER
119
HELX_P
A
LEU
379
A
LEU
136
1
7
18
A
THR
382
A
THR
139
HELX_P
A
LEU
395
A
LEU
152
1
8
14
A
ASP
404
A
ASP
161
HELX_P
A
GLN
427
A
GLN
184
1
9
24
A
GLN
432
A
GLN
189
HELX_P
A
HIS
450
A
HIS
207
1
10
19
A
HIS
450
A
HIS
207
HELX_P
A
SER
457
A
SER
214
1
11
8
A
THR
466
A
THR
223
HELX_P
A
TRP
473
A
TRP
230
1
12
8
B
HIS
746
B
HIS
3
HELX_P
B
LYS
755
B
LYS
12
1
13
10
C
THR
250
C
THR
7
HELX_P
C
LYS
266
C
LYS
23
1
14
17
C
MET
269
C
MET
26
HELX_P
C
LYS
279
C
LYS
36
1
15
11
C
SER
283
C
SER
40
HELX_P
C
LYS
308
C
LYS
65
1
16
26
C
GLY
311
C
GLY
68
HELX_P
C
LEU
315
C
LEU
72
5
17
5
C
ASP
316
C
ASP
73
HELX_P
C
ASN
341
C
ASN
98
1
18
26
C
GLY
347
C
GLY
104
HELX_P
C
ASN
358
C
ASN
115
1
19
12
C
SER
362
C
SER
119
HELX_P
C
LEU
379
C
LEU
136
1
20
18
C
THR
382
C
THR
139
HELX_P
C
LEU
395
C
LEU
152
1
21
14
C
ASP
404
C
ASP
161
HELX_P
C
GLN
427
C
GLN
184
1
22
24
C
GLN
432
C
GLN
189
HELX_P
C
ASN
448
C
ASN
205
1
23
17
C
HIS
450
C
HIS
207
HELX_P
C
SER
457
C
SER
214
1
24
8
C
THR
466
C
THR
223
HELX_P
C
ASP
474
C
ASP
231
1
25
9
D
HIS
746
D
HIS
3
HELX_P
D
LYS
755
D
LYS
12
1
26
10
HORMONE RECEPTOR
NUCLEAR RECEPTOR, CHOLESTEROL, BILE ACID, DNA-BINDING, NUCLEUS, RECEPTOR, TRANSCRIPTION, LIGAND BINDING DOMAIN TRANSCRIPTION REGULATION, COACTIVATOR, FXR ALTERNATIVE SPLICING, HORMONE RECEPTOR
NR1H4_HUMAN
UNP
1
258
Q96RI1
ELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGS
AVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREA
VEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ
NCOA1_HUMAN
UNP
2
744
Q15788
KDHQLLRYLLDKDE
258
486
3OOF
248
476
Q96RI1
A
1
5
233
744
757
3OOF
744
757
Q15788
B
2
1
14
258
486
3OOF
248
476
Q96RI1
C
1
5
233
744
757
3OOF
744
757
Q15788
D
2
1
14
1
expression tag
GLY
244
3OOF
A
Q96RI1
UNP
1
1
expression tag
SER
245
3OOF
A
Q96RI1
UNP
2
1
expression tag
HIS
246
3OOF
A
Q96RI1
UNP
3
1
expression tag
MET
247
3OOF
A
Q96RI1
UNP
4
1
GLU
engineered mutation
ALA
281
3OOF
A
Q96RI1
UNP
291
38
1
GLU
engineered mutation
ALA
354
3OOF
A
Q96RI1
UNP
364
111
3
expression tag
GLY
244
3OOF
C
Q96RI1
UNP
1
3
expression tag
SER
245
3OOF
C
Q96RI1
UNP
2
3
expression tag
HIS
246
3OOF
C
Q96RI1
UNP
3
3
expression tag
MET
247
3OOF
C
Q96RI1
UNP
4
3
GLU
engineered mutation
ALA
281
3OOF
C
Q96RI1
UNP
291
38
3
GLU
engineered mutation
ALA
354
3OOF
C
Q96RI1
UNP
364
111
BINDING SITE FOR RESIDUE OOF A 1
A
OOF
1
Software
18
BINDING SITE FOR RESIDUE OOF C 2
C
OOF
2
Software
16
A
HOH
28
G
HOH
18
1_555
A
HOH
70
G
HOH
18
1_555
A
ILE
273
A
ILE
30
18
1_555
A
THR
274
A
THR
31
18
1_555
A
ILE
277
A
ILE
34
18
1_555
A
ASN
287
A
ASN
44
18
1_555
A
LEU
291
A
LEU
48
18
1_555
A
MET
294
A
MET
51
18
1_555
A
MET
332
A
MET
89
18
1_555
A
PHE
333
A
PHE
90
18
1_555
A
ARG
335
A
ARG
92
18
1_555
A
SER
336
A
SER
93
18
1_555
A
ILE
339
A
ILE
96
18
1_555
A
PHE
340
A
PHE
97
18
1_555
A
LEU
352
A
LEU
109
18
1_555
A
ILE
356
A
ILE
113
18
1_555
A
MET
369
A
MET
126
18
1_555
A
TYR
373
A
TYR
130
18
1_555
C
HOH
141
I
HOH
16
1_555
C
ILE
273
C
ILE
30
16
1_555
C
ILE
277
C
ILE
34
16
1_555
C
LEU
291
C
LEU
48
16
1_555
C
MET
294
C
MET
51
16
1_555
C
ASN
297
C
ASN
54
16
1_555
C
HIS
298
C
HIS
55
16
1_555
C
MET
332
C
MET
89
16
1_555
C
PHE
333
C
PHE
90
16
1_555
C
ARG
335
C
ARG
92
16
1_555
C
SER
336
C
SER
93
16
1_555
C
ILE
339
C
ILE
96
16
1_555
C
PHE
340
C
PHE
97
16
1_555
C
ILE
356
C
ILE
113
16
1_555
C
MET
369
C
MET
126
16
1_555
C
TYR
373
C
TYR
130
16
1_555
20
C 2 2 21