0.021924 0.000000 0.000000 0.000000 0.021924 0.000000 0.000000 0.000000 0.009804 0.00000 0.00000 0.00000 Liu, Z. Wang, Y. Brunzelle, J. Kovari, I.A. Kovari, L.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 45.612 45.612 102.003 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 R C N 295 N O N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N N Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N C N 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N sing Y 313 N doub N 314 N sing Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing NE Protein J. 1572-3887 30 173 183 10.1007/s10930-011-9316-2 21394574 Nine Crystal Structures Determine the Substrate Envelope of the MDR HIV-1 Protease. 2011 10.2210/pdb3ou4/pdb pdb_00003ou4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 173 1 CCD 2008-08-09 MARMOSAIC 300 mm CCD Kohzu SINGLE WAVELENGTH M x-ray 1 1.0332 1.0 21-ID-D APS 1.0332 SYNCHROTRON APS BEAMLINE 21-ID-D 10769.635 HIV-1 protease 1 man polymer 10771.607 HIV-1 protease 1 man polymer 865.971 TF/PR substrate peptide 1 syn polymer 18.015 water 260 nat water no no PQITLWQRPIVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PTNVIGRNLMTQIGCTLNF PQITLWQRPIVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PTNVIGRNLMTQIGCTLNF A polypeptide(L) no no PQITLWQRPIVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKTIGTVLVGPT PTNVIGRNLMTQIGCTLNF PQITLWQRPIVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKTIGTVLVGPT PTNVIGRNLMTQIGCTLNF B polypeptide(L) no no FNFPQIT FNFPQIT C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample pol 11676 Human immunodeficiency virus 1 562 Escherichia coli sample pol 11676 Human immunodeficiency virus 1 562 Escherichia coli 1 2.37 48.05 VAPOR DIFFUSION, HANGING DROP 5.8 0.8M NaCl 01 M MES , pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references 1 0 2011-03-30 1 1 2011-07-13 1 2 2024-02-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details RCSB Y RCSB 2010-09-14 REL REL HOH water This sequence occurs naturally in HIV-1 11676 HIV-1 Human immunodeficiency virus 1 sample HOH 1 4 HOH HOH 100 A HOH 3 4 HOH HOH 101 A HOH 102 4 HOH HOH 102 A HOH 103 4 HOH HOH 103 A HOH 104 4 HOH HOH 104 A HOH 8 4 HOH HOH 105 A HOH 106 4 HOH HOH 106 A HOH 107 4 HOH HOH 107 A HOH 9 4 HOH HOH 108 A HOH 109 4 HOH HOH 109 A HOH 110 4 HOH HOH 110 A HOH 111 4 HOH HOH 111 A HOH 10 4 HOH HOH 112 A HOH 13 4 HOH HOH 113 A HOH 114 4 HOH HOH 114 A HOH 14 4 HOH HOH 115 A HOH 116 4 HOH HOH 116 A HOH 15 4 HOH HOH 117 A HOH 118 4 HOH HOH 118 A HOH 119 4 HOH HOH 119 A HOH 17 4 HOH HOH 120 A HOH 19 4 HOH HOH 121 A HOH 21 4 HOH HOH 122 A HOH 23 4 HOH HOH 123 A HOH 124 4 HOH HOH 124 A HOH 24 4 HOH HOH 125 A HOH 126 4 HOH HOH 126 A HOH 25 4 HOH HOH 127 A HOH 26 4 HOH HOH 128 A HOH 29 4 HOH HOH 129 A HOH 130 4 HOH HOH 130 A HOH 131 4 HOH HOH 131 A HOH 31 4 HOH HOH 132 A HOH 32 4 HOH HOH 133 A HOH 134 4 HOH HOH 134 A HOH 150 4 HOH HOH 135 A HOH 136 4 HOH HOH 136 A HOH 34 4 HOH HOH 137 A HOH 35 4 HOH HOH 138 A HOH 38 4 HOH HOH 139 A HOH 140 4 HOH HOH 140 A HOH 40 4 HOH HOH 141 A HOH 46 4 HOH HOH 142 A HOH 143 4 HOH HOH 143 A HOH 144 4 HOH HOH 144 A HOH 145 4 HOH HOH 145 A HOH 47 4 HOH HOH 146 A HOH 49 4 HOH HOH 147 A HOH 54 4 HOH HOH 148 A HOH 149 4 HOH HOH 149 A HOH 59 4 HOH HOH 150 A HOH 151 4 HOH HOH 151 A HOH 62 4 HOH HOH 152 A HOH 64 4 HOH HOH 153 A HOH 67 4 HOH HOH 154 A HOH 69 4 HOH HOH 155 A HOH 70 4 HOH HOH 156 A HOH 157 4 HOH HOH 157 A HOH 158 4 HOH HOH 158 A HOH 71 4 HOH HOH 159 A HOH 160 4 HOH HOH 160 A HOH 74 4 HOH HOH 161 A HOH 75 4 HOH HOH 162 A HOH 163 4 HOH HOH 163 A HOH 77 4 HOH HOH 164 A HOH 165 4 HOH HOH 165 A HOH 166 4 HOH HOH 166 A HOH 167 4 HOH HOH 167 A HOH 168 4 HOH HOH 168 A HOH 169 4 HOH HOH 169 A HOH 78 4 HOH HOH 170 A HOH 171 4 HOH HOH 171 A HOH 80 4 HOH HOH 172 A HOH 83 4 HOH HOH 173 A HOH 87 4 HOH HOH 174 A HOH 175 4 HOH HOH 175 A HOH 63 4 HOH HOH 176 A HOH 177 4 HOH HOH 177 A HOH 90 4 HOH HOH 178 A HOH 91 4 HOH HOH 179 A HOH 92 4 HOH HOH 180 A HOH 181 4 HOH HOH 181 A HOH 94 4 HOH HOH 182 A HOH 95 4 HOH HOH 183 A HOH 184 4 HOH HOH 184 A HOH 97 4 HOH HOH 185 A HOH 186 4 HOH HOH 186 A HOH 187 4 HOH HOH 187 A HOH 99 4 HOH HOH 188 A HOH 189 4 HOH HOH 189 A HOH 43 4 HOH HOH 190 A HOH 112 4 HOH HOH 191 A HOH 193 4 HOH HOH 193 A HOH 196 4 HOH HOH 196 A HOH 197 4 HOH HOH 197 A HOH 201 4 HOH HOH 201 A HOH 208 4 HOH HOH 208 A HOH 209 4 HOH HOH 209 A HOH 212 4 HOH HOH 212 A HOH 213 4 HOH HOH 213 A HOH 215 4 HOH HOH 215 A HOH 217 4 HOH HOH 217 A HOH 218 4 HOH HOH 218 A HOH 219 4 HOH HOH 219 A HOH 221 4 HOH HOH 221 A HOH 223 4 HOH HOH 223 A HOH 225 4 HOH HOH 225 A HOH 227 4 HOH HOH 227 A HOH 230 4 HOH HOH 230 A HOH 231 4 HOH HOH 231 A HOH 232 4 HOH HOH 232 A HOH 233 4 HOH HOH 233 A HOH 234 4 HOH HOH 234 A HOH 235 4 HOH HOH 235 A HOH 236 4 HOH HOH 236 A HOH 237 4 HOH HOH 237 A HOH 238 4 HOH HOH 238 A HOH 239 4 HOH HOH 239 A HOH 240 4 HOH HOH 240 A HOH 241 4 HOH HOH 241 A HOH 242 4 HOH HOH 242 A HOH 247 4 HOH HOH 247 A HOH 250 4 HOH HOH 250 A HOH 255 4 HOH HOH 255 A HOH 256 4 HOH HOH 256 A HOH 100 4 HOH HOH 100 B HOH 101 4 HOH HOH 101 B HOH 2 4 HOH HOH 102 B HOH 4 4 HOH HOH 103 B HOH 5 4 HOH HOH 104 B HOH 105 4 HOH HOH 105 B HOH 6 4 HOH HOH 106 B HOH 7 4 HOH HOH 107 B HOH 108 4 HOH HOH 108 B HOH 11 4 HOH HOH 109 B HOH 12 4 HOH HOH 110 B HOH 16 4 HOH HOH 111 B HOH 18 4 HOH HOH 112 B HOH 113 4 HOH HOH 113 B HOH 20 4 HOH HOH 114 B HOH 115 4 HOH HOH 115 B HOH 22 4 HOH HOH 116 B HOH 117 4 HOH HOH 117 B HOH 27 4 HOH HOH 118 B HOH 28 4 HOH HOH 119 B HOH 30 4 HOH HOH 120 B HOH 121 4 HOH HOH 121 B HOH 122 4 HOH HOH 122 B HOH 123 4 HOH HOH 123 B HOH 33 4 HOH HOH 124 B HOH 36 4 HOH HOH 125 B HOH 37 4 HOH HOH 126 B HOH 127 4 HOH HOH 127 B HOH 128 4 HOH HOH 128 B HOH 129 4 HOH HOH 129 B HOH 39 4 HOH HOH 130 B HOH 41 4 HOH HOH 131 B HOH 42 4 HOH HOH 132 B HOH 133 4 HOH HOH 133 B HOH 44 4 HOH HOH 134 B HOH 135 4 HOH HOH 135 B HOH 48 4 HOH HOH 136 B HOH 137 4 HOH HOH 137 B HOH 138 4 HOH HOH 138 B HOH 139 4 HOH HOH 139 B HOH 50 4 HOH HOH 140 B HOH 141 4 HOH HOH 141 B HOH 142 4 HOH HOH 142 B HOH 51 4 HOH HOH 143 B HOH 52 4 HOH HOH 144 B HOH 53 4 HOH HOH 145 B HOH 146 4 HOH HOH 146 B HOH 147 4 HOH HOH 147 B HOH 148 4 HOH HOH 148 B HOH 55 4 HOH HOH 149 B HOH 45 4 HOH HOH 150 B HOH 56 4 HOH HOH 151 B HOH 152 4 HOH HOH 152 B HOH 153 4 HOH HOH 153 B HOH 154 4 HOH HOH 154 B HOH 155 4 HOH HOH 155 B HOH 156 4 HOH HOH 156 B HOH 57 4 HOH HOH 157 B HOH 58 4 HOH HOH 158 B HOH 159 4 HOH HOH 159 B HOH 60 4 HOH HOH 160 B HOH 161 4 HOH HOH 161 B HOH 162 4 HOH HOH 162 B HOH 61 4 HOH HOH 163 B HOH 164 4 HOH HOH 164 B HOH 176 4 HOH HOH 165 B HOH 65 4 HOH HOH 166 B HOH 66 4 HOH HOH 167 B HOH 68 4 HOH HOH 168 B HOH 72 4 HOH HOH 169 B HOH 170 4 HOH HOH 170 B HOH 73 4 HOH HOH 171 B HOH 172 4 HOH HOH 172 B HOH 173 4 HOH HOH 173 B HOH 174 4 HOH HOH 174 B HOH 76 4 HOH HOH 175 B HOH 89 4 HOH HOH 176 B HOH 79 4 HOH HOH 177 B HOH 178 4 HOH HOH 178 B HOH 179 4 HOH HOH 179 B HOH 180 4 HOH HOH 180 B HOH 81 4 HOH HOH 181 B HOH 182 4 HOH HOH 182 B HOH 183 4 HOH HOH 183 B HOH 82 4 HOH HOH 184 B HOH 185 4 HOH HOH 185 B HOH 84 4 HOH HOH 186 B HOH 85 4 HOH HOH 187 B HOH 86 4 HOH HOH 188 B HOH 88 4 HOH HOH 189 B HOH 190 4 HOH HOH 190 B HOH 191 4 HOH HOH 191 B HOH 192 4 HOH HOH 192 B HOH 93 4 HOH HOH 193 B HOH 194 4 HOH HOH 194 B HOH 195 4 HOH HOH 195 B HOH 96 4 HOH HOH 196 B HOH 98 4 HOH HOH 197 B HOH 198 4 HOH HOH 198 B HOH 199 4 HOH HOH 199 B HOH 200 4 HOH HOH 200 B HOH 202 4 HOH HOH 202 B HOH 205 4 HOH HOH 205 B HOH 206 4 HOH HOH 206 B HOH 207 4 HOH HOH 207 B HOH 210 4 HOH HOH 210 B HOH 211 4 HOH HOH 211 B HOH 214 4 HOH HOH 214 B HOH 216 4 HOH HOH 216 B HOH 220 4 HOH HOH 220 B HOH 222 4 HOH HOH 222 B HOH 224 4 HOH HOH 224 B HOH 226 4 HOH HOH 226 B HOH 228 4 HOH HOH 228 B HOH 229 4 HOH HOH 229 B HOH 243 4 HOH HOH 243 B HOH 244 4 HOH HOH 244 B HOH 245 4 HOH HOH 245 B HOH 246 4 HOH HOH 246 B HOH 248 4 HOH HOH 248 B HOH 251 4 HOH HOH 251 B HOH 253 4 HOH HOH 253 B HOH 254 4 HOH HOH 254 B HOH 257 4 HOH HOH 257 B HOH 258 4 HOH HOH 258 B HOH 259 4 HOH HOH 259 B HOH 260 4 HOH HOH 260 B HOH 261 4 HOH HOH 261 B HOH 120 4 HOH HOH 120 C HOH 132 4 HOH HOH 132 C HOH 188 4 HOH HOH 188 C HOH 203 4 HOH HOH 203 C HOH 204 4 HOH HOH 204 C HOH 249 4 HOH HOH 249 C HOH 252 4 HOH HOH 252 C PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A ILE 10 n 10 ILE 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASN 25 n 25 ASN 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A VAL 36 n 36 VAL 36 A ASN 37 n 37 ASN 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A LEU 46 n 46 LEU 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A VAL 54 n 54 VAL 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A VAL 62 n 62 VAL 62 A PRO 63 n 63 PRO 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A VAL 71 n 71 VAL 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A THR 82 n 82 THR 82 A ASN 83 n 83 ASN 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A MET 90 n 90 MET 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B GLN 7 n 7 GLN 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B ILE 10 n 10 ILE 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASN 25 n 25 ASN 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B VAL 36 n 36 VAL 36 B ASN 37 n 37 ASN 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B LEU 46 n 46 LEU 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B VAL 54 n 54 VAL 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B VAL 62 n 62 VAL 62 B PRO 63 n 63 PRO 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B THR 71 n 71 THR 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B THR 82 n 82 THR 82 B ASN 83 n 83 ASN 83 B VAL 84 n 84 VAL 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B MET 90 n 90 MET 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B PHE 303 n 1 PHE 303 C ASN 304 n 2 ASN 304 C PHE 305 n 3 PHE 305 C PRO 306 n 4 PRO 306 C GLN 307 n 5 GLN 307 C ILE 308 n 6 ILE 308 C THR 309 n 7 THR 309 C author_and_software_defined_assembly PISA 3 trimeric 4390 -20 10460 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B O ASN 98 B O ASN 98 A N THR 96 A N THR 96 A N LEU 97 A N LEU 97 B O ILE 3 B O ILE 3 A N LYS 43 A N LYS 43 A O GLN 58 A O GLN 58 A N ILE 64 A N ILE 64 A O VAL 71 A O VAL 71 A O LEU 76 A O LEU 76 A N LEU 33 A N LEU 33 A N VAL 32 A N VAL 32 A O VAL 84 A O VAL 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O LYS 20 A O LYS 20 A N ILE 13 A N ILE 13 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 B N LYS 43 B N LYS 43 B O GLN 58 B O GLN 58 B N ILE 64 B N ILE 64 B O THR 71 B O THR 71 B O LEU 76 B O LEU 76 B N LEU 33 B N LEU 33 B N VAL 32 B N VAL 32 B O VAL 84 B O VAL 84 B O ILE 85 B O ILE 85 B N LEU 23 B N LEU 23 B O ALA 22 B O ALA 22 B N VAL 11 B N VAL 11 B N LYS 14 B N LYS 14 B O GLU 65 B O GLU 65 1 B N PRO 1 B N PRO 1 1 Y 1 A A O O HOH HOH 255 256 1.99 1 C C O O ILE HOH 308 203 2.08 1 C ASN 304 -168.98 117.30 19.888 0.38 0.00 0.00 0.38 0.00 -0.76 0.955 0.937 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23160 0.19468 0.19468 0.19658 1.60 45.60 1377 26091 26078 5.0 99.95 1.674 0.061 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 0.100 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 1.60 45.60 260 1835 0 0 1575 0.011 0.022 1606 1.310 1.977 2185 6.024 5.000 202 38.937 25.000 60 10.540 15.000 280 10.794 15.000 8 0.083 0.200 261 0.005 0.020 1174 0.205 0.200 730 0.311 0.200 1082 0.151 0.200 157 0.228 0.200 71 0.120 0.200 23 1.397 1.500 1049 1.489 2.000 1660 2.434 3.000 629 4.058 4.500 525 0.255 0.229 1.642 119 1941 20 100.00 1.6 45.596 3OU4 26078 26078 1 1 1 100 1.60 1.66 100.0 1.66 1.72 100.0 1.72 1.80 100.0 1.80 1.90 100.0 1.90 2.02 100.0 2.02 2.17 100.0 2.17 2.39 100.0 2.39 2.74 100.0 2.74 3.45 100.0 3.45 45.54 100.0 data collection HKL-2000 phasing AMoRE refinement REFMAC 5.2.0019 data reduction CrystalClear data scaling CrystalClear MDR769 HIV-1 protease complexed with TF/PR hepta-peptide 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N HIV-1 protease dimer binds with TF/PR substrate peptide A GLY 86 A GLY 86 HELX_P A GLY 94 A GLY 94 1 1 9 B GLY 86 B GLY 86 HELX_P B GLY 94 B GLY 94 1 2 9 HYDROLASE/PEPTIDE This sequence occurs naturally in humans., HIV-1 protease, protease, TF/PR substrate peptide, none, HYDROLASE, HYDROLASE-PEPTIDE complex Q000H7_9HIV1 UNP 1 1 Q000H7 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDINLPGRWKPKMIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PTNVIGRNLMTQIGCTLNF Q000H7_9HIV1 UNP 2 1 Q000H7 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDINLPGRWKPKMIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PTNVIGRNLMTQIGCTLNF Q9WLL9_9HIV1 UNP 3 53 Q9WLL9 FNFPQIT 1 99 3OU4 1 99 Q000H7 A 1 1 99 1 99 3OU4 1 99 Q000H7 B 2 1 99 53 59 3OU4 303 309 Q9WLL9 C 3 1 7 1 ASP conflict ASN 25 3OU4 A Q000H7 UNP 25 25 1 ASP conflict GLU 35 3OU4 A Q000H7 UNP 35 35 1 ILE conflict VAL 36 3OU4 A Q000H7 UNP 36 36 1 MET conflict LEU 46 3OU4 A Q000H7 UNP 46 46 2 ASP conflict ASN 25 3OU4 B Q000H7 UNP 25 25 2 ASP conflict GLU 35 3OU4 B Q000H7 UNP 35 35 2 ILE conflict VAL 36 3OU4 B Q000H7 UNP 36 36 2 MET conflict LEU 46 3OU4 B Q000H7 UNP 46 46 2 VAL conflict THR 71 3OU4 B Q000H7 UNP 71 71 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B ILE 3 B ILE 3 A LYS 43 A LYS 43 A GLY 48 A GLY 48 A PHE 53 A PHE 53 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A VAL 32 A VAL 32 A LEU 33 A LEU 33 A VAL 84 A VAL 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A ILE 10 A ILE 10 A ILE 15 A ILE 15 A PHE 53 A PHE 53 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 48 B GLY 48 B PHE 53 B PHE 53 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B VAL 32 B VAL 32 B LEU 33 B LEU 33 B VAL 84 B VAL 84 B ILE 85 B ILE 85 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B ILE 10 B ILE 10 B ILE 15 B ILE 15 B PHE 53 B PHE 53 B ILE 66 B ILE 66 BINDING SITE FOR CHAIN C OF TF/PR SUBSTRATE PEPTIDE Software 30 A ARG 8 A ARG 8 30 1_555 A ASN 25 A ASN 25 30 1_555 A GLY 27 A GLY 27 30 1_555 A ALA 28 A ALA 28 30 1_555 A ASP 29 A ASP 29 30 1_555 A ASP 30 A ASP 30 30 1_555 A GLY 48 A GLY 48 30 1_555 A THR 82 A THR 82 30 1_555 A HOH 190 D HOH 30 1_555 A HOH 191 D HOH 30 1_555 A HOH 230 D HOH 30 1_555 B ARG 8 B ARG 8 30 1_555 B ASN 25 B ASN 25 30 1_555 B GLY 27 B GLY 27 30 1_555 B ALA 28 B ALA 28 30 1_555 B ASP 29 B ASP 29 30 1_555 B ASP 30 B ASP 30 30 1_555 B ARG 41 B ARG 41 30 3_455 B LYS 45 B LYS 45 30 1_555 B LEU 46 B LEU 46 30 1_555 B ILE 47 B ILE 47 30 1_555 B GLY 48 B GLY 48 30 1_555 B THR 82 B THR 82 30 1_555 B HOH 163 E HOH 30 1_555 C HOH 120 F HOH 30 1_555 C HOH 132 F HOH 30 1_555 C HOH 188 F HOH 30 1_555 C HOH 203 F HOH 30 1_555 C HOH 204 F HOH 30 1_555 C HOH 249 F HOH 30 1_555 76 P 41