0.023846
0.000000
0.000000
0.000000
0.023846
0.000000
0.000000
0.000000
0.009177
0.00000
0.00000
0.00000
Clements, J.H.
Martin, S.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
41.935
41.935
108.971
C8 H15 N O2
157.210
1-aminocycloheptanecarboxylic acid
peptide linking
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H12 N O6 P
261.168
n
O-PHOSPHOTYROSINE
PHOSPHONOTYROSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
N
C
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
N
N
9
N
C
N
10
N
C
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
C
N
28
N
O
N
29
N
O
N
30
N
C
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
N
N
35
S
C
N
36
N
C
N
37
N
O
N
38
N
C
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
N
N
48
S
C
N
49
N
C
N
50
N
O
N
51
N
C
N
52
N
C
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
N
N
58
N
O
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
O
N
81
N
N
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
N
N
92
S
C
N
93
N
C
N
94
N
O
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
CL
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
N
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
S
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
O
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
Y
162
N
C
Y
163
N
N
Y
164
N
C
Y
165
N
C
Y
166
N
N
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
N
N
182
S
C
N
183
N
C
N
184
N
O
N
185
S
C
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
N
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
S
N
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
N
301
N
C
N
302
N
C
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
O
N
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
N
325
N
O
N
326
N
P
N
327
N
O
N
328
N
O
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
N
347
N
O
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
R
C
N
361
N
O
N
362
N
C
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
N
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
N
411
N
O
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
N
429
N
C
N
430
N
C
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
doub
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
Y
159
N
sing
Y
160
N
doub
Y
161
N
doub
N
162
N
sing
Y
163
N
sing
N
164
N
sing
Y
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
Y
310
N
doub
Y
311
N
sing
Y
312
N
sing
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
133
18518
18521
10.1021/ja2068752
22007755
Protein-ligand interactions: thermodynamic effects associated with increasing nonpolar surface area.
2011
10.2210/pdb3ove/pdb
pdb_00003ove
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2010-07-27
RIGAKU RAXIS IV++
Blue max-flux confocal
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
13614.279
Growth factor receptor-bound protein 2
unp residues 53-163
1
man
polymer
553.502
PYAC7CN
1
syn
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
90
nat
water
Adapter protein GRB2, Protein Ash, SH2/SH3 adapter GRB2
no
no
IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV
DYHRSTSVSRNQQIFLRDIEQVPQQPTYVQANNNNNN
IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV
DYHRSTSVSRNQQIFLRDIEQVPQQPTYVQANNNNNN
A
polypeptide(L)
no
yes
(ACT)(PTR)(03E)N(NH2)
XYXNX
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
SG13009
sample
ASH, GRB2
9606
Homo sapiens
562
Escherichia coli
SG13009
Plasmid
pQE-60
1
1.82
30.97
VAPOR DIFFUSION, HANGING DROP
8.5
0.2 M magnesium chloride hexahydrate, 0.1 M TRIS,30% w/v polyethylene glycol 4,000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2011-11-02
1
1
2011-12-07
1
2
2023-09-06
1
3
2023-12-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
RCSB
Y
RCSB
2010-09-16
REL
REL
CL
CHLORIDE ION
HOH
water
3C7I
PDB entry 3C7I
PDB
experimental model
CL
174
3
CL
CL
174
A
HOH
6
4
HOH
HOH
6
A
HOH
7
4
HOH
HOH
7
A
HOH
8
4
HOH
HOH
8
A
HOH
9
4
HOH
HOH
9
A
HOH
10
4
HOH
HOH
10
A
HOH
11
4
HOH
HOH
11
A
HOH
12
4
HOH
HOH
12
A
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
26
4
HOH
HOH
26
A
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
30
4
HOH
HOH
30
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
33
4
HOH
HOH
33
A
HOH
34
4
HOH
HOH
34
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
41
4
HOH
HOH
41
A
HOH
42
4
HOH
HOH
42
A
HOH
43
4
HOH
HOH
43
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
47
4
HOH
HOH
47
A
HOH
48
4
HOH
HOH
48
A
HOH
49
4
HOH
HOH
49
A
HOH
50
4
HOH
HOH
50
A
HOH
51
4
HOH
HOH
51
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
170
A
HOH
175
4
HOH
HOH
175
A
HOH
176
4
HOH
HOH
176
A
HOH
177
4
HOH
HOH
177
A
HOH
178
4
HOH
HOH
178
A
HOH
179
4
HOH
HOH
179
A
HOH
180
4
HOH
HOH
180
A
HOH
181
4
HOH
HOH
181
A
HOH
182
4
HOH
HOH
182
A
HOH
183
4
HOH
HOH
183
A
HOH
184
4
HOH
HOH
184
A
HOH
185
4
HOH
HOH
185
A
HOH
186
4
HOH
HOH
186
A
HOH
187
4
HOH
HOH
187
A
HOH
188
4
HOH
HOH
188
A
HOH
189
4
HOH
HOH
189
A
HOH
190
4
HOH
HOH
190
A
HOH
191
4
HOH
HOH
191
A
HOH
192
4
HOH
HOH
192
A
HOH
193
4
HOH
HOH
193
A
HOH
194
4
HOH
HOH
194
A
HOH
195
4
HOH
HOH
195
A
HOH
196
4
HOH
HOH
196
A
HOH
197
4
HOH
HOH
197
A
HOH
198
4
HOH
HOH
198
A
HOH
199
4
HOH
HOH
199
A
HOH
200
4
HOH
HOH
200
A
HOH
201
4
HOH
HOH
201
A
HOH
202
4
HOH
HOH
202
A
HOH
203
4
HOH
HOH
203
A
HOH
204
4
HOH
HOH
204
A
HOH
205
4
HOH
HOH
205
A
HOH
206
4
HOH
HOH
206
A
HOH
207
4
HOH
HOH
207
A
HOH
208
4
HOH
HOH
208
A
HOH
209
4
HOH
HOH
209
A
HOH
210
4
HOH
HOH
210
A
HOH
211
4
HOH
HOH
211
A
HOH
212
4
HOH
HOH
212
A
HOH
213
4
HOH
HOH
213
A
HOH
214
4
HOH
HOH
214
A
HOH
215
4
HOH
HOH
215
A
HOH
216
4
HOH
HOH
216
A
n
1
53
A
GLU
54
n
2
GLU
54
A
MET
55
n
3
MET
55
A
LYS
56
n
4
LYS
56
A
PRO
57
n
5
PRO
57
A
HIS
58
n
6
HIS
58
A
PRO
59
n
7
PRO
59
A
TRP
60
n
8
TRP
60
A
PHE
61
n
9
PHE
61
A
PHE
62
n
10
PHE
62
A
GLY
63
n
11
GLY
63
A
LYS
64
n
12
LYS
64
A
ILE
65
n
13
ILE
65
A
PRO
66
n
14
PRO
66
A
ARG
67
n
15
ARG
67
A
ALA
68
n
16
ALA
68
A
LYS
69
n
17
LYS
69
A
ALA
70
n
18
ALA
70
A
GLU
71
n
19
GLU
71
A
GLU
72
n
20
GLU
72
A
MET
73
n
21
MET
73
A
LEU
74
n
22
LEU
74
A
SER
75
n
23
SER
75
A
LYS
76
n
24
LYS
76
A
GLN
77
n
25
GLN
77
A
ARG
78
n
26
ARG
78
A
HIS
79
n
27
HIS
79
A
ASP
80
n
28
ASP
80
A
GLY
81
n
29
GLY
81
A
ALA
82
n
30
ALA
82
A
PHE
83
n
31
PHE
83
A
LEU
84
n
32
LEU
84
A
ILE
85
n
33
ILE
85
A
ARG
86
n
34
ARG
86
A
GLU
87
n
35
GLU
87
A
SER
88
n
36
SER
88
A
GLU
89
n
37
GLU
89
A
SER
90
n
38
SER
90
A
ALA
91
n
39
ALA
91
A
PRO
92
n
40
PRO
92
A
GLY
93
n
41
GLY
93
A
ASP
94
n
42
ASP
94
A
PHE
95
n
43
PHE
95
A
SER
96
n
44
SER
96
A
LEU
97
n
45
LEU
97
A
SER
98
n
46
SER
98
A
VAL
99
n
47
VAL
99
A
LYS
100
n
48
LYS
100
A
PHE
101
n
49
PHE
101
A
GLY
102
n
50
GLY
102
A
ASN
103
n
51
ASN
103
A
ASP
104
n
52
ASP
104
A
VAL
105
n
53
VAL
105
A
GLN
106
n
54
GLN
106
A
HIS
107
n
55
HIS
107
A
PHE
108
n
56
PHE
108
A
LYS
109
n
57
LYS
109
A
VAL
110
n
58
VAL
110
A
LEU
111
n
59
LEU
111
A
ARG
112
n
60
ARG
112
A
ASP
113
n
61
ASP
113
A
GLY
114
n
62
GLY
114
A
ALA
115
n
63
ALA
115
A
GLY
116
n
64
GLY
116
A
LYS
117
n
65
LYS
117
A
TYR
118
n
66
TYR
118
A
PHE
119
n
67
PHE
119
A
LEU
120
n
68
LEU
120
A
TRP
121
n
69
TRP
121
A
VAL
122
n
70
VAL
122
A
VAL
123
n
71
VAL
123
A
LYS
124
n
72
LYS
124
A
PHE
125
n
73
PHE
125
A
ASN
126
n
74
ASN
126
A
SER
127
n
75
SER
127
A
LEU
128
n
76
LEU
128
A
ASN
129
n
77
ASN
129
A
GLU
130
n
78
GLU
130
A
LEU
131
n
79
LEU
131
A
VAL
132
n
80
VAL
132
A
ASP
133
n
81
ASP
133
A
TYR
134
n
82
TYR
134
A
HIS
135
n
83
HIS
135
A
ARG
136
n
84
ARG
136
A
SER
137
n
85
SER
137
A
THR
138
n
86
THR
138
A
SER
139
n
87
SER
139
A
VAL
140
n
88
VAL
140
A
SER
141
n
89
SER
141
A
ARG
142
n
90
ARG
142
A
ASN
143
n
91
ASN
143
A
GLN
144
n
92
GLN
144
A
GLN
145
n
93
GLN
145
A
ILE
146
n
94
ILE
146
A
PHE
147
n
95
PHE
147
A
LEU
148
n
96
LEU
148
A
ARG
149
n
97
ARG
149
A
ASP
150
n
98
ASP
150
A
ILE
151
n
99
ILE
151
A
GLU
152
n
100
GLU
152
A
GLN
153
n
101
GLN
153
A
VAL
154
n
102
VAL
154
A
n
103
155
A
n
104
156
A
n
105
157
A
n
106
158
A
n
107
159
A
n
108
160
A
n
109
161
A
n
110
162
A
n
111
163
A
n
112
164
A
n
113
165
A
n
114
166
A
n
115
167
A
n
116
168
A
n
117
169
A
ACT
1
n
1
ACT
1
B
PTR
2
n
2
PTR
2
B
03E
3
n
3
03E
3
B
ASN
4
n
4
ASN
4
B
NH2
5
n
5
NH2
5
B
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
1200
-15
6230
4800
-39
10060
B
PTR
2
O-PHOSPHOTYROSINE
B
PTR
2
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_465
y-1,x+1,-z
crystal symmetry operation
-41.9350000000
41.9350000000
0.0000000000
A
O
GLN
106
A
O
GLN
54
A
N
VAL
99
A
N
VAL
47
A
O
SER
98
A
O
SER
46
A
N
LEU
84
A
N
LEU
32
A
N
PHE
83
A
N
PHE
31
A
O
ARG
149
A
O
ARG
97
A
N
LEU
111
A
N
LEU
59
A
O
PHE
119
A
O
PHE
67
A
N
TYR
118
A
N
TYR
66
A
O
PHE
125
A
O
PHE
73
1
A
HOH
50
D
HOH
1
A
CG
GLU
54
A
CG
GLU
2
0
Y
1
A
CD
GLU
54
A
CD
GLU
2
0
Y
1
A
OE1
GLU
54
A
OE1
GLU
2
0
Y
1
A
OE2
GLU
54
A
OE2
GLU
2
0
Y
1
A
CD
LYS
56
A
CD
LYS
4
0
Y
1
A
CE
LYS
56
A
CE
LYS
4
0
Y
1
A
NZ
LYS
56
A
NZ
LYS
4
0
Y
1
A
ILE
53
A
ILE
1
1
Y
1
A
PRO
155
A
PRO
103
1
Y
1
A
GLN
156
A
GLN
104
1
Y
1
A
GLN
157
A
GLN
105
1
Y
1
A
PRO
158
A
PRO
106
1
Y
1
A
THR
159
A
THR
107
1
Y
1
A
TYR
160
A
TYR
108
1
Y
1
A
VAL
161
A
VAL
109
1
Y
1
A
GLN
162
A
GLN
110
1
Y
1
A
ALA
163
A
ALA
111
1
Y
1
A
ASN
164
A
ASN
112
1
Y
1
A
ASN
165
A
ASN
113
1
Y
1
A
ASN
166
A
ASN
114
1
Y
1
A
ASN
167
A
ASN
115
1
Y
1
A
ASN
168
A
ASN
116
1
Y
1
A
ASN
169
A
ASN
117
1
Y
1
-20.19
2.60
111.60
91.41
A
A
A
CB
CG
CD
LYS
LYS
LYS
56
56
56
N
1
A
A
CG
CD
LYS
LYS
56
56
0.399
0.034
1.520
1.919
N
1
A
TRP
121
-126.38
-67.87
1
A
VAL
122
-134.93
-47.47
21.029
-0.07
0.00
0.00
-0.07
0.00
0.15
0.952
0.909
0.25970
0.17746
0.18120
1.82
26.05
411
8310
4.7
93.74
3.055
0.095
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.170
0.80
0.80
1.40
PDB entry 3C7I
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.82
26.05
90
963
1
0
872
0.022
0.022
936
2.033
1.972
1271
7.481
5.000
114
28.598
23.191
47
14.186
15.000
164
17.742
15.000
7
0.142
0.200
129
0.011
0.021
727
1.312
1.500
529
2.022
2.000
859
2.986
3.000
407
4.233
4.500
405
0.286
0.213
1.868
24
623
20
98.48
1.82
50.00
3OVE
8801
0.076
1
22.5
11.8
93.7
1.82
1.89
10.1
900
0.223
1
12.6
96.4
data collection
HKL-2000
phasing
PHASER
refinement
REFMAC
5.5.0109
data reduction
HKL-2000
data scaling
HKL-2000
Crystal Structure of the Grb2 SH2 Domain in Complex with a pYXN-Derived Tripeptide
1
N
N
2
N
N
3
N
N
4
N
N
A
PRO
66
A
PRO
14
HELX_P
A
SER
75
A
SER
23
1
1
10
A
SER
127
A
SER
75
HELX_P
A
HIS
135
A
HIS
83
1
2
9
covale
1.338
both
B
03E
3
B
C
03E
3
1_555
B
ASN
4
B
N
ASN
4
1_555
covale
1.368
both
B
ASN
4
B
C
ASN
4
1_555
B
NH2
5
B
N
NH2
5
1_555
SIGNALING PROTEIN/ANTAGONIST
Grb2 SH2 Domain, Phosphotyrosine Binding, SIGNALING PROTEIN-ANTAGONIST complex
GRB2_HUMAN
UNP
1
53
P62993
IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV
DYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA
3OVE
PDB
2
3OVE
53
163
3OVE
53
163
P62993
A
1
1
111
1
5
3OVE
1
5
3OVE
B
2
1
5
1
expression tag
ASN
164
3OVE
A
P62993
UNP
112
1
expression tag
ASN
165
3OVE
A
P62993
UNP
113
1
expression tag
ASN
166
3OVE
A
P62993
UNP
114
1
expression tag
ASN
167
3OVE
A
P62993
UNP
115
1
expression tag
ASN
168
3OVE
A
P62993
UNP
116
1
expression tag
ASN
169
3OVE
A
P62993
UNP
117
4
3
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ASP
104
A
ASP
52
A
LYS
109
A
LYS
57
A
PHE
95
A
PHE
43
A
PHE
101
A
PHE
49
A
ALA
82
A
ALA
30
A
GLU
87
A
GLU
35
A
ARG
149
A
ARG
97
A
ASP
150
A
ASP
98
A
LEU
111
A
LEU
59
A
ARG
112
A
ARG
60
A
TYR
118
A
TYR
66
A
PHE
119
A
PHE
67
A
LYS
124
A
LYS
72
A
PHE
125
A
PHE
73
BINDING SITE FOR RESIDUE CL A 174
A
CL
174
Software
2
BINDING SITE FOR CHAIN B OF PYAC7CN
Software
19
A
SER
139
A
SER
87
2
1_555
A
GLN
145
A
GLN
93
2
1_555
A
HOH
36
D
HOH
19
1_555
A
ARG
67
A
ARG
15
19
1_555
A
ARG
78
A
ARG
26
19
7_565
A
ARG
86
A
ARG
34
19
1_555
A
SER
88
A
SER
36
19
1_555
A
SER
90
A
SER
38
19
1_555
A
SER
96
A
SER
44
19
1_555
A
HIS
107
A
HIS
55
19
1_555
A
PHE
108
A
PHE
56
19
1_555
A
LYS
109
A
LYS
57
19
1_555
A
LEU
120
A
LEU
68
19
1_555
A
TRP
121
A
TRP
69
19
1_555
A
HOH
176
D
HOH
19
1_555
A
HOH
177
D
HOH
19
1_555
A
HOH
199
D
HOH
19
1_555
A
HOH
202
D
HOH
19
1_555
A
HOH
206
D
HOH
19
1_555
A
HOH
207
D
HOH
19
1_555
A
HOH
212
D
HOH
19
1_555
96
P 43 21 2