0.016736 0.000000 0.000000 0.000000 0.016749 0.000000 0.000000 0.000000 0.012222 0.00000 0.00000 0.00000 Wielens, J. Chalmers, D.K. Headey, S.J. Deadman, J.J. Rhodes, D.K. Parker, M.W. Scanlon, M.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 59.750 59.704 81.818 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cd 2 112.411 CADMIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O6 180.156 beta-D-fructofuranose beta-D-fructose; D-fructose; fructose D-saccharide, beta linking C6 H12 O6 180.156 alpha-D-glucopyranose alpha-D-glucose; D-glucose; glucose D-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H9 N3 S 179.242 1-methyl-3-(thiophen-2-yl)-1H-pyrazol-5-amine non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CD N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N C N 90 R C N 91 S C N 92 S C N 93 R C N 94 N C N 95 N O N 96 N O N 97 N O N 98 N O N 99 N O N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 S C N 114 R C N 115 S C N 116 S C N 117 R C N 118 N C N 119 N O N 120 N O N 121 N O N 122 N O N 123 N O N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C N 142 N C N 143 N C N 144 N O N 145 N N N 146 N O N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N N N 158 S C N 159 N C N 160 N O N 161 N C N 162 N C N 163 N C N 164 N O N 165 N O N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 N C N 178 N C N 179 N O N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C Y 191 N C Y 192 N N Y 193 N C Y 194 N C Y 195 N N N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N O N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 S C N 215 N C N 216 N C N 217 N C N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N C N 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C N 284 N C N 285 N S N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H Y 299 N C Y 300 N C Y 301 N N Y 302 N N Y 303 N C Y 304 N C Y 305 N S Y 306 N C Y 307 N C Y 308 N C N 309 N C N 310 N N N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C N 348 N C N 349 N C N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 N C N 365 N O N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N S N 375 N O N 376 N O N 377 N O N 378 N O N 379 N N N 380 S C N 381 N C N 382 N O N 383 R C N 384 N O N 385 N C N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N N Y 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N N N 424 S C N 425 N C N 426 N O N 427 N C Y 428 N C Y 429 N C Y 430 N C Y 431 N C Y 432 N C Y 433 N C N 434 N O N 435 N O N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 N C N 452 N C N 453 N C N 454 N O N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing Y 188 N sing Y 189 N doub Y 190 N doub N 191 N sing Y 192 N sing N 193 N sing Y 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing Y 285 N doub Y 286 N sing Y 287 N sing N 288 N sing Y 289 N sing N 290 N sing Y 291 N doub Y 292 N sing Y 293 N sing Y 294 N doub Y 295 N sing Y 296 N doub Y 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing Y 318 N doub Y 319 N sing Y 320 N sing N 321 N sing Y 322 N doub N 323 N sing Y 324 N doub N 325 N sing Y 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing Y 391 N doub Y 392 N sing Y 393 N sing N 394 N sing Y 395 N doub Y 396 N sing Y 397 N sing N 398 N sing Y 399 N sing Y 400 N doub N 401 N sing Y 402 N doub N 403 N sing Y 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing Y 419 N doub Y 420 N sing Y 421 N sing N 422 N sing Y 423 N doub N 424 N sing Y 425 N doub N 426 N sing Y 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N doub N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing DE Chemmedchem 1860-7179 6 258 261 10.1002/cmdc.201000483 21275048 Fragment-based design of ligands targeting a novel site on the integrase enzyme of human immunodeficiency virus 1 2011 10.2210/pdb3ovn/pdb pdb_00003ovn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 K-B pair of biomorph mirrors CCD 2007-02-14 MARMOSAIC 300 mm CCD double crystal monochromator and K-B pair of biomorph mirrors SINGLE WAVELENGTH M x-ray 1 1 1.0 23-ID-B APS 1 SYNCHROTRON APS BEAMLINE 23-ID-B 17802.174 POL polyprotein Integrase CATALYTIC CORE DOMAIN, 765-927 C56S, W131D, F139D, F185H 2 man polymer 342.297 beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose 1 man branched 96.063 SULFATE ION 2 syn non-polymer 179.242 1-methyl-3-(thiophen-2-yl)-1H-pyrazol-5-amine 2 syn non-polymer 112.411 CADMIUM ION 4 syn non-polymer 18.015 water 57 nat water sucrose no no MHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAA CDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDIQ TKE MHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAA CDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDIQ TKE A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n NL43 sample pol 11676 Human immunodeficiency virus 1 562 Escherichia coli BL21 (DE3) PLASMID PET23B+ 1 2.05 39.98 VAPOR DIFFUSION, HANGING DROP 5.6 1.6M AmSO4, 0.1M Na Citrate pH 5.6, 5mM CdCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 atom_site chem_comp entity entity_name_com pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule_features pdbx_nonpoly_scheme pdbx_struct_conn_angle pdbx_validate_close_contact struct_asym struct_conn struct_conn_type struct_ref_seq_dif struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Advisory Atomic model Data collection Database references Derived calculations Non-polymer description Structure summary Data collection Database references Refinement description Structure summary 1 0 2011-03-09 1 1 2011-07-13 2 0 2020-07-29 2 1 2023-11-01 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.occupancy _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.src_method _entity.type _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_asym.entity_id _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession D SUC 1 n C GLC 1 D SUC 1 n C FRU 2 DFrufb b-D-fructofuranose b-D-Fruf Fru DGlcpa a-D-glucopyranose a-D-Glcp Glc HIV-1 integrase core domain RCSB Y PDBJ 2010-09-16 REL REL oligosaccharide DFrufb2-1DGlcpa 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,2,1/[ha122h-2b_2-5][a2122h-1a_1-5]/1-2/a2-b1 2 PDB2Glycan 1.1.0 WURCS [][b-D-Fruf]{[(2+1)][a-D-Glcp]{}} 2 PDB-CARE LINUCS C1 O2 GLC FRU 1 2 2 O1 HO2 sing n n SO4 SULFATE ION MPV 1-methyl-3-(thiophen-2-yl)-1H-pyrazol-5-amine CD CADMIUM ION HOH water 3L3U PDB ENTRY 3L3U PDB experimental model Nutrient oligosaccharide with reducing-end-to-reducing-end glycosidic bond sucrose Oligosaccharide SO4 1 3 SO4 SO4 1 A MPA 1 4 MPV MPV 213 A CD 1003 5 CD CD 1003 A CD 1004 5 CD CD 1004 A SO4 2 3 SO4 SO4 2 B MPA 1 4 MPV MPV 213 B CD 1001 5 CD CD 1001 B CD 1002 5 CD CD 1002 B HOH 5 6 HOH HOH 5 A HOH 7 6 HOH HOH 7 A HOH 8 6 HOH HOH 8 A HOH 10 6 HOH HOH 10 A HOH 13 6 HOH HOH 13 A HOH 14 6 HOH HOH 14 A HOH 15 6 HOH HOH 15 A HOH 16 6 HOH HOH 16 A HOH 18 6 HOH HOH 18 A HOH 20 6 HOH HOH 20 A HOH 24 6 HOH HOH 24 A HOH 25 6 HOH HOH 25 A HOH 27 6 HOH HOH 27 A HOH 28 6 HOH HOH 28 A HOH 31 6 HOH HOH 31 A HOH 32 6 HOH HOH 32 A HOH 33 6 HOH HOH 33 A HOH 38 6 HOH HOH 38 A HOH 44 6 HOH HOH 44 A HOH 49 6 HOH HOH 49 A HOH 1 6 HOH HOH 214 A HOH 51 6 HOH HOH 215 A HOH 52 6 HOH HOH 216 A HOH 53 6 HOH HOH 217 A HOH 56 6 HOH HOH 218 A HOH 57 6 HOH HOH 219 A HOH 3 6 HOH HOH 3 B HOH 4 6 HOH HOH 4 B HOH 6 6 HOH HOH 6 B HOH 9 6 HOH HOH 9 B HOH 11 6 HOH HOH 11 B HOH 12 6 HOH HOH 12 B HOH 17 6 HOH HOH 17 B HOH 19 6 HOH HOH 19 B HOH 21 6 HOH HOH 21 B HOH 22 6 HOH HOH 22 B HOH 23 6 HOH HOH 23 B HOH 26 6 HOH HOH 26 B HOH 29 6 HOH HOH 29 B HOH 30 6 HOH HOH 30 B HOH 34 6 HOH HOH 34 B HOH 35 6 HOH HOH 35 B HOH 36 6 HOH HOH 36 B HOH 37 6 HOH HOH 37 B HOH 39 6 HOH HOH 39 B HOH 40 6 HOH HOH 40 B HOH 41 6 HOH HOH 41 B HOH 42 6 HOH HOH 42 B HOH 43 6 HOH HOH 43 B HOH 45 6 HOH HOH 45 B HOH 46 6 HOH HOH 46 B HOH 47 6 HOH HOH 47 B HOH 48 6 HOH HOH 48 B HOH 2 6 HOH HOH 214 B HOH 50 6 HOH HOH 215 B HOH 54 6 HOH HOH 216 B HOH 55 6 HOH HOH 217 B n 1 50 A n 2 51 A n 3 52 A n 4 53 A n 5 54 A n 6 55 A SER 56 n 7 SER 56 A SER 57 n 8 SER 57 A PRO 58 n 9 PRO 58 A GLY 59 n 10 GLY 59 A ILE 60 n 11 ILE 60 A TRP 61 n 12 TRP 61 A GLN 62 n 13 GLN 62 A LEU 63 n 14 LEU 63 A ASP 64 n 15 ASP 64 A CYS 65 n 16 CYS 65 A THR 66 n 17 THR 66 A HIS 67 n 18 HIS 67 A LEU 68 n 19 LEU 68 A GLU 69 n 20 GLU 69 A GLY 70 n 21 GLY 70 A LYS 71 n 22 LYS 71 A VAL 72 n 23 VAL 72 A ILE 73 n 24 ILE 73 A LEU 74 n 25 LEU 74 A VAL 75 n 26 VAL 75 A ALA 76 n 27 ALA 76 A VAL 77 n 28 VAL 77 A HIS 78 n 29 HIS 78 A VAL 79 n 30 VAL 79 A ALA 80 n 31 ALA 80 A SER 81 n 32 SER 81 A GLY 82 n 33 GLY 82 A TYR 83 n 34 TYR 83 A ILE 84 n 35 ILE 84 A GLU 85 n 36 GLU 85 A ALA 86 n 37 ALA 86 A GLU 87 n 38 GLU 87 A VAL 88 n 39 VAL 88 A ILE 89 n 40 ILE 89 A PRO 90 n 41 PRO 90 A ALA 91 n 42 ALA 91 A GLU 92 n 43 GLU 92 A THR 93 n 44 THR 93 A GLY 94 n 45 GLY 94 A GLN 95 n 46 GLN 95 A GLU 96 n 47 GLU 96 A THR 97 n 48 THR 97 A ALA 98 n 49 ALA 98 A TYR 99 n 50 TYR 99 A PHE 100 n 51 PHE 100 A LEU 101 n 52 LEU 101 A LEU 102 n 53 LEU 102 A LYS 103 n 54 LYS 103 A LEU 104 n 55 LEU 104 A ALA 105 n 56 ALA 105 A GLY 106 n 57 GLY 106 A ARG 107 n 58 ARG 107 A TRP 108 n 59 TRP 108 A PRO 109 n 60 PRO 109 A VAL 110 n 61 VAL 110 A LYS 111 n 62 LYS 111 A THR 112 n 63 THR 112 A VAL 113 n 64 VAL 113 A HIS 114 n 65 HIS 114 A THR 115 n 66 THR 115 A ASP 116 n 67 ASP 116 A ASN 117 n 68 ASN 117 A GLY 118 n 69 GLY 118 A SER 119 n 70 SER 119 A ASN 120 n 71 ASN 120 A PHE 121 n 72 PHE 121 A THR 122 n 73 THR 122 A SER 123 n 74 SER 123 A THR 124 n 75 THR 124 A THR 125 n 76 THR 125 A VAL 126 n 77 VAL 126 A LYS 127 n 78 LYS 127 A ALA 128 n 79 ALA 128 A ALA 129 n 80 ALA 129 A CYS 130 n 81 CYS 130 A ASP 131 n 82 ASP 131 A TRP 132 n 83 TRP 132 A ALA 133 n 84 ALA 133 A GLY 134 n 85 GLY 134 A ILE 135 n 86 ILE 135 A LYS 136 n 87 LYS 136 A GLN 137 n 88 GLN 137 A GLU 138 n 89 GLU 138 A ASP 139 n 90 ASP 139 A GLY 140 n 91 GLY 140 A ILE 141 n 92 ILE 141 A PRO 142 n 93 PRO 142 A n 94 143 A n 95 144 A n 96 145 A n 97 146 A n 98 147 A n 99 148 A n 100 149 A n 101 150 A n 102 151 A GLU 152 n 103 GLU 152 A SER 153 n 104 SER 153 A MET 154 n 105 MET 154 A ASN 155 n 106 ASN 155 A LYS 156 n 107 LYS 156 A GLU 157 n 108 GLU 157 A LEU 158 n 109 LEU 158 A LYS 159 n 110 LYS 159 A LYS 160 n 111 LYS 160 A ILE 161 n 112 ILE 161 A ILE 162 n 113 ILE 162 A GLY 163 n 114 GLY 163 A GLN 164 n 115 GLN 164 A VAL 165 n 116 VAL 165 A ARG 166 n 117 ARG 166 A ASP 167 n 118 ASP 167 A GLN 168 n 119 GLN 168 A ALA 169 n 120 ALA 169 A GLU 170 n 121 GLU 170 A HIS 171 n 122 HIS 171 A LEU 172 n 123 LEU 172 A LYS 173 n 124 LYS 173 A THR 174 n 125 THR 174 A ALA 175 n 126 ALA 175 A VAL 176 n 127 VAL 176 A GLN 177 n 128 GLN 177 A MET 178 n 129 MET 178 A ALA 179 n 130 ALA 179 A VAL 180 n 131 VAL 180 A PHE 181 n 132 PHE 181 A ILE 182 n 133 ILE 182 A HIS 183 n 134 HIS 183 A ASN 184 n 135 ASN 184 A HIS 185 n 136 HIS 185 A LYS 186 n 137 LYS 186 A ARG 187 n 138 ARG 187 A LYS 188 n 139 LYS 188 A GLY 189 n 140 GLY 189 A GLY 190 n 141 GLY 190 A ILE 191 n 142 ILE 191 A GLY 192 n 143 GLY 192 A GLY 193 n 144 GLY 193 A TYR 194 n 145 TYR 194 A SER 195 n 146 SER 195 A ALA 196 n 147 ALA 196 A GLY 197 n 148 GLY 197 A GLU 198 n 149 GLU 198 A ARG 199 n 150 ARG 199 A ILE 200 n 151 ILE 200 A VAL 201 n 152 VAL 201 A ASP 202 n 153 ASP 202 A ILE 203 n 154 ILE 203 A ILE 204 n 155 ILE 204 A ALA 205 n 156 ALA 205 A THR 206 n 157 THR 206 A ASP 207 n 158 ASP 207 A n 159 208 A n 160 209 A n 161 210 A n 162 211 A n 163 212 A n 1 50 B n 2 51 B n 3 52 B n 4 53 B n 5 54 B n 6 55 B n 7 56 B SER 57 n 8 SER 57 B PRO 58 n 9 PRO 58 B GLY 59 n 10 GLY 59 B ILE 60 n 11 ILE 60 B TRP 61 n 12 TRP 61 B GLN 62 n 13 GLN 62 B LEU 63 n 14 LEU 63 B ASP 64 n 15 ASP 64 B CYS 65 n 16 CYS 65 B THR 66 n 17 THR 66 B HIS 67 n 18 HIS 67 B LEU 68 n 19 LEU 68 B GLU 69 n 20 GLU 69 B GLY 70 n 21 GLY 70 B LYS 71 n 22 LYS 71 B VAL 72 n 23 VAL 72 B ILE 73 n 24 ILE 73 B LEU 74 n 25 LEU 74 B VAL 75 n 26 VAL 75 B ALA 76 n 27 ALA 76 B VAL 77 n 28 VAL 77 B HIS 78 n 29 HIS 78 B VAL 79 n 30 VAL 79 B ALA 80 n 31 ALA 80 B SER 81 n 32 SER 81 B GLY 82 n 33 GLY 82 B TYR 83 n 34 TYR 83 B ILE 84 n 35 ILE 84 B GLU 85 n 36 GLU 85 B ALA 86 n 37 ALA 86 B GLU 87 n 38 GLU 87 B VAL 88 n 39 VAL 88 B ILE 89 n 40 ILE 89 B PRO 90 n 41 PRO 90 B ALA 91 n 42 ALA 91 B GLU 92 n 43 GLU 92 B THR 93 n 44 THR 93 B GLY 94 n 45 GLY 94 B GLN 95 n 46 GLN 95 B GLU 96 n 47 GLU 96 B THR 97 n 48 THR 97 B ALA 98 n 49 ALA 98 B TYR 99 n 50 TYR 99 B PHE 100 n 51 PHE 100 B LEU 101 n 52 LEU 101 B LEU 102 n 53 LEU 102 B LYS 103 n 54 LYS 103 B LEU 104 n 55 LEU 104 B ALA 105 n 56 ALA 105 B GLY 106 n 57 GLY 106 B ARG 107 n 58 ARG 107 B TRP 108 n 59 TRP 108 B PRO 109 n 60 PRO 109 B VAL 110 n 61 VAL 110 B LYS 111 n 62 LYS 111 B THR 112 n 63 THR 112 B VAL 113 n 64 VAL 113 B HIS 114 n 65 HIS 114 B THR 115 n 66 THR 115 B ASP 116 n 67 ASP 116 B ASN 117 n 68 ASN 117 B GLY 118 n 69 GLY 118 B SER 119 n 70 SER 119 B ASN 120 n 71 ASN 120 B PHE 121 n 72 PHE 121 B THR 122 n 73 THR 122 B SER 123 n 74 SER 123 B THR 124 n 75 THR 124 B THR 125 n 76 THR 125 B VAL 126 n 77 VAL 126 B LYS 127 n 78 LYS 127 B ALA 128 n 79 ALA 128 B ALA 129 n 80 ALA 129 B CYS 130 n 81 CYS 130 B ASP 131 n 82 ASP 131 B TRP 132 n 83 TRP 132 B ALA 133 n 84 ALA 133 B GLY 134 n 85 GLY 134 B ILE 135 n 86 ILE 135 B LYS 136 n 87 LYS 136 B GLN 137 n 88 GLN 137 B GLU 138 n 89 GLU 138 B ASP 139 n 90 ASP 139 B n 91 140 B n 92 141 B n 93 142 B n 94 143 B n 95 144 B n 96 145 B n 97 146 B n 98 147 B n 99 148 B n 100 149 B n 101 150 B n 102 151 B GLU 152 n 103 GLU 152 B SER 153 n 104 SER 153 B MET 154 n 105 MET 154 B ASN 155 n 106 ASN 155 B LYS 156 n 107 LYS 156 B GLU 157 n 108 GLU 157 B LEU 158 n 109 LEU 158 B LYS 159 n 110 LYS 159 B LYS 160 n 111 LYS 160 B ILE 161 n 112 ILE 161 B ILE 162 n 113 ILE 162 B GLY 163 n 114 GLY 163 B GLN 164 n 115 GLN 164 B VAL 165 n 116 VAL 165 B ARG 166 n 117 ARG 166 B ASP 167 n 118 ASP 167 B GLN 168 n 119 GLN 168 B ALA 169 n 120 ALA 169 B GLU 170 n 121 GLU 170 B HIS 171 n 122 HIS 171 B LEU 172 n 123 LEU 172 B LYS 173 n 124 LYS 173 B THR 174 n 125 THR 174 B ALA 175 n 126 ALA 175 B VAL 176 n 127 VAL 176 B GLN 177 n 128 GLN 177 B MET 178 n 129 MET 178 B ALA 179 n 130 ALA 179 B VAL 180 n 131 VAL 180 B PHE 181 n 132 PHE 181 B ILE 182 n 133 ILE 182 B HIS 183 n 134 HIS 183 B ASN 184 n 135 ASN 184 B HIS 185 n 136 HIS 185 B LYS 186 n 137 LYS 186 B ARG 187 n 138 ARG 187 B LYS 188 n 139 LYS 188 B GLY 189 n 140 GLY 189 B GLY 190 n 141 GLY 190 B ILE 191 n 142 ILE 191 B GLY 192 n 143 GLY 192 B GLY 193 n 144 GLY 193 B TYR 194 n 145 TYR 194 B SER 195 n 146 SER 195 B ALA 196 n 147 ALA 196 B GLY 197 n 148 GLY 197 B GLU 198 n 149 GLU 198 B ARG 199 n 150 ARG 199 B ILE 200 n 151 ILE 200 B VAL 201 n 152 VAL 201 B ASP 202 n 153 ASP 202 B ILE 203 n 154 ILE 203 B ILE 204 n 155 ILE 204 B ALA 205 n 156 ALA 205 B THR 206 n 157 THR 206 B ASP 207 n 158 ASP 207 B ILE 208 n 159 ILE 208 B GLN 209 n 160 GLN 209 B n 161 210 B n 162 211 B n 163 212 B author_and_software_defined_assembly PISA 2 dimeric 2830 -14 13070 A CYS 65 A SG CYS 16 1_555 A CD 1003 F CD CD 1_555 A HIS 67 A NE2 HIS 18 1_555 116.3 A CYS 65 A SG CYS 16 1_555 A CD 1003 F CD CD 1_555 A GLU 92 A OE1 GLU 43 1_555 103.3 A HIS 67 A NE2 HIS 18 1_555 A CD 1003 F CD CD 1_555 A GLU 92 A OE1 GLU 43 1_555 88.1 A CYS 65 A SG CYS 16 1_555 A CD 1003 F CD CD 1_555 A HOH 217 L O HOH 1_555 86.7 A HIS 67 A NE2 HIS 18 1_555 A CD 1003 F CD CD 1_555 A HOH 217 L O HOH 1_555 88.0 A GLU 92 A OE1 GLU 43 1_555 A CD 1003 F CD CD 1_555 A HOH 217 L O HOH 1_555 170.0 A CYS 65 A SG CYS 16 1_555 A CD 1004 G CD CD 1_555 A GLU 92 A OE2 GLU 43 1_555 94.7 A CYS 65 A SG CYS 16 1_555 A CD 1004 G CD CD 1_555 A ASP 116 A OD2 ASP 67 1_555 104.0 A GLU 92 A OE2 GLU 43 1_555 A CD 1004 G CD CD 1_555 A ASP 116 A OD2 ASP 67 1_555 161.0 A CYS 65 A SG CYS 16 1_555 A CD 1004 G CD CD 1_555 A HOH 214 L O HOH 1_555 96.8 A GLU 92 A OE2 GLU 43 1_555 A CD 1004 G CD CD 1_555 A HOH 214 L O HOH 1_555 90.3 A ASP 116 A OD2 ASP 67 1_555 A CD 1004 G CD CD 1_555 A HOH 214 L O HOH 1_555 90.0 B HOH 40 M O HOH 1_555 B CD 1001 J CD CD 1_555 B CYS 65 B SG CYS 16 1_555 159.3 B HOH 40 M O HOH 1_555 B CD 1001 J CD CD 1_555 B GLU 92 B OE2 GLU 43 1_555 83.6 B CYS 65 B SG CYS 16 1_555 B CD 1001 J CD CD 1_555 B GLU 92 B OE2 GLU 43 1_555 86.4 B HOH 40 M O HOH 1_555 B CD 1001 J CD CD 1_555 B ASP 116 B OD2 ASP 67 1_555 83.5 B CYS 65 B SG CYS 16 1_555 B CD 1001 J CD CD 1_555 B ASP 116 B OD2 ASP 67 1_555 97.6 B GLU 92 B OE2 GLU 43 1_555 B CD 1001 J CD CD 1_555 B ASP 116 B OD2 ASP 67 1_555 153.1 B HOH 40 M O HOH 1_555 B CD 1001 J CD CD 1_555 B HOH 214 M O HOH 1_555 94.1 B CYS 65 B SG CYS 16 1_555 B CD 1001 J CD CD 1_555 B HOH 214 M O HOH 1_555 106.2 B GLU 92 B OE2 GLU 43 1_555 B CD 1001 J CD CD 1_555 B HOH 214 M O HOH 1_555 107.2 B ASP 116 B OD2 ASP 67 1_555 B CD 1001 J CD CD 1_555 B HOH 214 M O HOH 1_555 97.2 B HOH 40 M O HOH 1_555 B CD 1001 J CD CD 1_555 B HOH 217 M O HOH 1_555 93.7 B CYS 65 B SG CYS 16 1_555 B CD 1001 J CD CD 1_555 B HOH 217 M O HOH 1_555 65.6 B GLU 92 B OE2 GLU 43 1_555 B CD 1001 J CD CD 1_555 B HOH 217 M O HOH 1_555 62.9 B ASP 116 B OD2 ASP 67 1_555 B CD 1001 J CD CD 1_555 B HOH 217 M O HOH 1_555 94.5 B HOH 214 M O HOH 1_555 B CD 1001 J CD CD 1_555 B HOH 217 M O HOH 1_555 166.6 B HOH 43 M O HOH 1_555 B CD 1002 K CD CD 1_555 B CYS 65 B SG CYS 16 1_555 88.0 B HOH 43 M O HOH 1_555 B CD 1002 K CD CD 1_555 B HIS 67 B NE2 HIS 18 1_555 100.4 B CYS 65 B SG CYS 16 1_555 B CD 1002 K CD CD 1_555 B HIS 67 B NE2 HIS 18 1_555 114.7 B HOH 43 M O HOH 1_555 B CD 1002 K CD CD 1_555 B GLU 92 B OE1 GLU 43 1_555 166.0 B CYS 65 B SG CYS 16 1_555 B CD 1002 K CD CD 1_555 B GLU 92 B OE1 GLU 43 1_555 104.7 B HIS 67 B NE2 HIS 18 1_555 B CD 1002 K CD CD 1_555 B GLU 92 B OE1 GLU 43 1_555 80.0 B HOH 43 M O HOH 1_555 B CD 1002 K CD CD 1_555 B HOH 217 M O HOH 1_555 73.6 B CYS 65 B SG CYS 16 1_555 B CD 1002 K CD CD 1_555 B HOH 217 M O HOH 1_555 73.5 B HIS 67 B NE2 HIS 18 1_555 B CD 1002 K CD CD 1_555 B HOH 217 M O HOH 1_555 170.1 B GLU 92 B OE1 GLU 43 1_555 B CD 1002 K CD CD 1_555 B HOH 217 M O HOH 1_555 103.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 89 A O ILE 40 A N VAL 72 A N VAL 23 A O ILE 73 A O ILE 24 A N THR 66 A N THR 17 A N LEU 63 A N LEU 14 A O HIS 114 A O HIS 65 A N VAL 113 A N VAL 64 A O GLU 138 A O GLU 89 A N LYS 188 A N LYS 139 A O TYR 194 A O TYR 145 B O GLU 85 B O GLU 36 B N ALA 76 B N ALA 27 B O VAL 75 B O VAL 26 B N ASP 64 B N ASP 15 B N LEU 63 B N LEU 14 B O HIS 114 B O HIS 65 B N VAL 113 B N VAL 64 B O LYS 136 B O LYS 87 1 A CG LYS 127 A CG LYS 78 1 Y 1 A CD LYS 127 A CD LYS 78 1 Y 1 A CE LYS 127 A CE LYS 78 1 Y 1 A NZ LYS 127 A NZ LYS 78 1 Y 1 A CG LYS 136 A CG LYS 87 1 Y 1 A CD LYS 136 A CD LYS 87 1 Y 1 A CE LYS 136 A CE LYS 87 1 Y 1 A NZ LYS 136 A NZ LYS 87 1 Y 1 A MET 50 A MET 1 1 Y 1 A HIS 51 A HIS 2 1 Y 1 A GLY 52 A GLY 3 1 Y 1 A GLN 53 A GLN 4 1 Y 1 A VAL 54 A VAL 5 1 Y 1 A ASP 55 A ASP 6 1 Y 1 A TYR 143 A TYR 94 1 Y 1 A ASN 144 A ASN 95 1 Y 1 A PRO 145 A PRO 96 1 Y 1 A GLN 146 A GLN 97 1 Y 1 A SER 147 A SER 98 1 Y 1 A GLN 148 A GLN 99 1 Y 1 A GLY 149 A GLY 100 1 Y 1 A VAL 150 A VAL 101 1 Y 1 A ILE 151 A ILE 102 1 Y 1 A ILE 208 A ILE 159 1 Y 1 A GLN 209 A GLN 160 1 Y 1 A THR 210 A THR 161 1 Y 1 A LYS 211 A LYS 162 1 Y 1 A GLU 212 A GLU 163 1 Y 1 B MET 50 B MET 1 1 Y 1 B HIS 51 B HIS 2 1 Y 1 B GLY 52 B GLY 3 1 Y 1 B GLN 53 B GLN 4 1 Y 1 B VAL 54 B VAL 5 1 Y 1 B ASP 55 B ASP 6 1 Y 1 B SER 56 B SER 7 1 Y 1 B GLY 140 B GLY 91 1 Y 1 B ILE 141 B ILE 92 1 Y 1 B PRO 142 B PRO 93 1 Y 1 B TYR 143 B TYR 94 1 Y 1 B ASN 144 B ASN 95 1 Y 1 B PRO 145 B PRO 96 1 Y 1 B GLN 146 B GLN 97 1 Y 1 B SER 147 B SER 98 1 Y 1 B GLN 148 B GLN 99 1 Y 1 B GLY 149 B GLY 100 1 Y 1 B VAL 150 B VAL 101 1 Y 1 B ILE 151 B ILE 102 1 Y 1 B THR 210 B THR 161 1 Y 1 B LYS 211 B LYS 162 1 Y 1 B GLU 212 B GLU 163 1 Y 1 B B NH1 O ARG HOH 107 30 2.01 1 C C O5 O5 GLC FRU 1 2 2.16 25.036 -0.83 0.00 0.00 3.24 0.00 -2.41 0.944 0.923 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.24882 0.21084 0.21278 1.95 40.91 1117 21811 20602 5.1 98.83 4.656 0.130 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.165 0.80 0.80 1.40 PDB ENTRY 3L3U MAXIMUM LIKELIHOOD MASK 1.95 40.91 57 2286 61 0 2168 0.022 0.022 2266 0.001 0.020 1472 2.174 1.962 3073 1.062 3.000 3615 6.585 5.000 280 35.231 25.054 93 16.860 15.000 379 11.879 15.000 8 0.112 0.200 351 0.008 0.020 2485 0.001 0.020 429 1.189 1.500 1397 0.277 1.500 586 2.124 2.000 2242 2.897 3.000 869 4.472 4.500 831 0.305 0.270 2.001 92 1517 20 99.63 22.38 1.95 48.25 3OVN 23203 21811 0.1 0.112 1 9.7 4.5 99.4 0.497 1.95 2.06 2.9 3184 0.479 4.6 99.4 data collection Blu-Ice phasing AMoRE refinement REFMAC 5.5.0109 data reduction MOSFLM data scaling SCALA N Fragment-based approach to the design of ligands targeting a novel site on HIV-1 integrase 1 N N 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 3 N N 4 N N 5 N N 5 N N 6 N N 6 N N A THR 93 A THR 44 HELX_P A TRP 108 A TRP 59 1 1 16 A GLY 118 A GLY 69 HELX_P A SER 123 A SER 74 1 2 6 A SER 123 A SER 74 HELX_P A GLY 134 A GLY 85 1 3 12 A GLU 152 A GLU 103 HELX_P A ARG 166 A ARG 117 1 4 15 A ASP 167 A ASP 118 HELX_P A ALA 169 A ALA 120 5 5 3 A HIS 171 A HIS 122 HELX_P A LYS 186 A LYS 137 1 6 16 A ALA 196 A ALA 147 HELX_P A ALA 205 A ALA 156 1 7 10 B THR 93 B THR 44 HELX_P B TRP 108 B TRP 59 1 8 16 B GLY 118 B GLY 69 HELX_P B THR 122 B THR 73 5 9 5 B SER 123 B SER 74 HELX_P B GLY 134 B GLY 85 1 10 12 B GLU 152 B GLU 103 HELX_P B ARG 166 B ARG 117 1 11 15 B ASP 167 B ASP 118 HELX_P B ALA 169 B ALA 120 5 12 3 B HIS 171 B HIS 122 HELX_P B LYS 186 B LYS 137 1 13 16 B SER 195 B SER 146 HELX_P B ILE 208 B ILE 159 1 14 14 covale 1.444 both sing C GLC 1 C C1 GLC 1_555 C FRU 2 C O2 FRU 1_555 metalc 2.453 A CYS 65 A SG CYS 16 1_555 A CD 1003 F CD CD 1_555 metalc 2.576 A CYS 65 A SG CYS 16 1_555 A CD 1004 G CD CD 1_555 metalc 2.370 A HIS 67 A NE2 HIS 18 1_555 A CD 1003 F CD CD 1_555 metalc 1.888 A GLU 92 A OE1 GLU 43 1_555 A CD 1003 F CD CD 1_555 metalc 2.158 A GLU 92 A OE2 GLU 43 1_555 A CD 1004 G CD CD 1_555 metalc 2.366 A ASP 116 A OD2 ASP 67 1_555 A CD 1004 G CD CD 1_555 metalc 2.645 A HOH 214 L O HOH 1_555 A CD 1004 G CD CD 1_555 metalc 2.059 A HOH 217 L O HOH 1_555 A CD 1003 F CD CD 1_555 metalc 2.518 B HOH 40 M O HOH 1_555 B CD 1001 J CD CD 1_555 metalc 1.949 B HOH 43 M O HOH 1_555 B CD 1002 K CD CD 1_555 metalc 2.637 B CYS 65 B SG CYS 16 1_555 B CD 1001 J CD CD 1_555 metalc 2.542 B CYS 65 B SG CYS 16 1_555 B CD 1002 K CD CD 1_555 metalc 2.189 B HIS 67 B NE2 HIS 18 1_555 B CD 1002 K CD CD 1_555 metalc 2.035 B GLU 92 B OE2 GLU 43 1_555 B CD 1001 J CD CD 1_555 metalc 1.841 B GLU 92 B OE1 GLU 43 1_555 B CD 1002 K CD CD 1_555 metalc 2.279 B ASP 116 B OD2 ASP 67 1_555 B CD 1001 J CD CD 1_555 metalc 2.609 B HOH 214 M O HOH 1_555 B CD 1001 J CD CD 1_555 metalc 2.370 B HOH 217 M O HOH 1_555 B CD 1001 J CD CD 1_555 metalc 1.930 B HOH 217 M O HOH 1_555 B CD 1002 K CD CD 1_555 VIRAL PROTEIN/TRANSFERASE INHIBITOR DNA INTEGRATION, AIDS, INTEGRASE, ENDONUCLEASE, POLYNUCLEOTIDYL TRANSFERASE, DNA BINDING, VIRAL PROTEIN, RNaseH, FRAGMENT BINDING, VIRAL PROTEIN-TRANSFERASE INHIBITOR complex Q72498_9HIV1 UNP 1 765 Q72498 MHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAA CWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQ TKE 765 927 3OVN 50 212 Q72498 A 1 1 163 765 927 3OVN 50 212 Q72498 B 1 1 163 1 CYS engineered mutation SER 56 3OVN A Q72498 UNP 771 7 1 TRP engineered mutation ASP 131 3OVN A Q72498 UNP 846 82 1 PHE engineered mutation ASP 139 3OVN A Q72498 UNP 854 90 1 PHE engineered mutation HIS 185 3OVN A Q72498 UNP 900 136 2 CYS engineered mutation SER 56 3OVN B Q72498 UNP 771 7 2 TRP engineered mutation ASP 131 3OVN B Q72498 UNP 846 82 2 PHE engineered mutation ASP 139 3OVN B Q72498 UNP 854 90 2 PHE engineered mutation HIS 185 3OVN B Q72498 UNP 900 136 5 2 5 anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel parallel A ILE 84 A ILE 35 A ILE 89 A ILE 40 A LYS 71 A LYS 22 A HIS 78 A HIS 29 A ILE 60 A ILE 11 A LEU 68 A LEU 19 A THR 112 A THR 63 A THR 115 A THR 66 A LYS 136 A LYS 87 A ASP 139 A ASP 90 A ARG 187 A ARG 138 A LYS 188 A LYS 139 A TYR 194 A TYR 145 A SER 195 A SER 146 B TYR 83 B TYR 34 B ILE 89 B ILE 40 B LYS 71 B LYS 22 B HIS 78 B HIS 29 B ILE 60 B ILE 11 B LEU 68 B LEU 19 B THR 112 B THR 63 B HIS 114 B HIS 65 B LYS 136 B LYS 87 B GLU 138 B GLU 89 19 P 21 21 21