0.010593
0.006116
0.000000
0.000000
0.012232
0.000000
0.000000
0.000000
0.012029
0.00000
0.00000
0.00000
Hagel, M.
Niu, D.
St.Martin, T.
Sheets, M.P.
Qiao, L.
Bernard, H.
Karp, R.M.
Zhu, Z.
Labenski, M.T.
Chaturvedi, P.C.
Nacht, M.
Westlin, W.F.
Petter, R.C.
Singh, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
94.401
94.401
83.129
C14 H13 Br N2 O3
337.169
n
(4R)-4-[(7-bromoisoquinolin-1-yl)oxy]-L-proline
L-peptide linking
C6 H9 N O2
127.141
(1R,2S)-1-amino-2-ethenylcyclopropanecarboxylic acid
peptide linking
C3 H7 N O2 S
121.158
cyclopropanesulfonamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C3 H7 N O2
89.093
D-ALANINE
D-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H6 O2
74.079
PROPANOIC ACID
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
Y
1
N
C
Y
2
N
N
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
N
11
N
BR
N
12
N
O
N
13
R
C
N
14
N
C
N
15
S
C
N
16
N
N
N
17
N
C
N
18
N
C
N
19
N
O
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
O
N
33
N
H
N
34
N
N
N
35
R
C
N
36
S
C
N
37
N
C
N
38
N
C
N
39
N
C
N
40
N
C
N
41
N
O
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
O
N
51
N
H
N
52
N
N
N
53
N
S
N
54
N
O
N
55
N
O
N
56
N
C
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
N
N
67
S
C
N
68
N
C
N
69
N
O
N
70
N
C
N
71
N
O
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
S
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
C
N
86
N
N
N
87
N
C
N
88
N
N
N
89
N
N
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
N
N
140
R
C
N
141
N
C
N
142
N
O
N
143
N
C
N
144
N
S
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
R
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
N
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
O
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
N
C
N
207
N
C
N
208
N
O
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
Y
220
N
C
Y
221
N
N
Y
222
N
C
Y
223
N
C
Y
224
N
N
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
S
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
N
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
S
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
C
N
352
N
C
N
353
N
C
N
354
N
O
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
N
367
N
C
N
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
N
384
N
O
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
R
C
N
398
N
O
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
N
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
N
448
N
O
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
N
466
N
C
N
467
N
C
N
468
N
O
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
ZN
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
Y
10
N
doub
Y
11
N
sing
Y
12
N
sing
Y
13
N
doub
Y
14
N
sing
Y
15
N
sing
N
16
N
sing
Y
17
N
doub
Y
18
N
doub
Y
19
N
sing
Y
20
N
doub
Y
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
doub
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
doub
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
Y
219
N
sing
Y
220
N
doub
Y
221
N
doub
N
222
N
sing
Y
223
N
sing
N
224
N
sing
Y
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
Y
327
N
doub
Y
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
doub
N
332
N
sing
Y
333
N
doub
N
334
N
sing
Y
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
Y
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
Y
434
N
doub
Y
435
N
sing
Y
436
N
sing
N
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
doub
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
US
Nat.Chem.Biol.
1552-4450
7
22
24
10.1038/nchembio.492
21113170
Selective irreversible inhibition of a protease by targeting a noncatalytic cysteine.
2011
10.2210/pdb3oyp/pdb
pdb_00003oyp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2009-12-04
PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
1.0
1.0
X06SA
SLS
1.0000
1.0
SYNCHROTRON
SLS BEAMLINE X06SA
19749.553
Serine protease NS3
3.4.21.98, 3.6.1.15, 3.6.4.13
PROTEASE/HELICASE NS3 (P70), UNP residues 1027-1213
2
man
polymer
1686.097
Non-structural protein 4A
NONSTRUCTURAL PROTEIN NS4A (P4), UNP residues 1677-1991
2
man
polymer
676.579
Peptidomimetic inhibitor
2
syn
polymer
65.409
ZINC ION
2
syn
non-polymer
18.015
water
10
nat
water
Hepacivirin, NS3P, p70
NS4A, p8
no
no
APITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQ
DLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGIFRAAVCT
RGVAKAVDFIPVESMETTMRSPVFTDN
APITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQ
DLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGIFRAAVCT
RGVAKAVDFIPVESMETTMRSPVFTDN
A,B
polypeptide(L)
no
no
KGSVVIVGRIILSGRK
KGSVVIVGRIILSGRK
C,D
polypeptide(L)
no
yes
(PPI)(DAL)(0Y8)(0Y9)(0YA)
XAPXX
E,F
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HCV
sample
11116
Hepatitis C virus (isolate Japanese)
562
Escherichia coli
HCV
sample
11116
Hepatitis C virus (isolate Japanese)
562
Escherichia coli
1
2.51
51.11
NONE
VAPOR DIFFUSION, SITTING DROP
5.2
NaCl, pH 5.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
citation_author
audit_author
citation_author
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
atom_site
chem_comp_atom
chem_comp_bond
struct_conn
repository
Initial release
Version format compliance
Other
Non-polymer description
Structure summary
Database references
Database references
Structure summary
Data collection
Database references
Derived calculations
Refinement description
Atomic model
Data collection
Derived calculations
1
0
2010-12-01
1
1
2011-07-13
1
2
2012-12-12
1
3
2012-12-19
1
4
2018-01-24
1
5
2018-01-31
1
6
2023-09-06
2
0
2023-11-15
_citation_author.name
_audit_author.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_value_order
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_atom_site.auth_atom_id
_atom_site.label_atom_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_label_atom_id
RCSB
Y
RCSB
2010-09-23
REL
REL
ZN
ZINC ION
HOH
water
1DXP
PDB
experimental model
Antiviral
N-propanoyl-D-alanyl-(4R)-4-[(7-bromoisoquinolin-1-yl)oxy]-N-{(1R,2R)-1-[(cyclopropylsulfonyl)carbamoyl]-2-ethenylcyclopropyl}-L-prolinamide
Peptide-like
ZN
1
4
ZN
ZN
201
A
ZN
2
4
ZN
ZN
201
B
HOH
1
5
HOH
HOH
301
A
HOH
5
5
HOH
HOH
302
A
HOH
6
5
HOH
HOH
303
A
HOH
9
5
HOH
HOH
304
A
HOH
10
5
HOH
HOH
305
A
HOH
3
5
HOH
HOH
301
B
HOH
4
5
HOH
HOH
302
B
HOH
2
5
HOH
HOH
301
C
HOH
8
5
HOH
HOH
302
C
HOH
7
5
HOH
HOH
301
D
n
1
1
A
PRO
2
n
2
PRO
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
ALA
5
n
5
ALA
5
A
TYR
6
n
6
TYR
6
A
SER
7
n
7
SER
7
A
GLN
8
n
8
GLN
8
A
GLN
9
n
9
GLN
9
A
THR
10
n
10
THR
10
A
ARG
11
n
11
ARG
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
LEU
14
n
14
LEU
14
A
GLY
15
n
15
GLY
15
A
CYS
16
n
16
CYS
16
A
ILE
17
n
17
ILE
17
A
ILE
18
n
18
ILE
18
A
THR
19
n
19
THR
19
A
SER
20
n
20
SER
20
A
LEU
21
n
21
LEU
21
A
THR
22
n
22
THR
22
A
GLY
23
n
23
GLY
23
A
ARG
24
n
24
ARG
24
A
ASP
25
n
25
ASP
25
A
LYS
26
n
26
LYS
26
A
ASN
27
n
27
ASN
27
A
GLN
28
n
28
GLN
28
A
VAL
29
n
29
VAL
29
A
ASP
30
n
30
ASP
30
A
GLY
31
n
31
GLY
31
A
GLU
32
n
32
GLU
32
A
VAL
33
n
33
VAL
33
A
GLN
34
n
34
GLN
34
A
VAL
35
n
35
VAL
35
A
LEU
36
n
36
LEU
36
A
SER
37
n
37
SER
37
A
THR
38
n
38
THR
38
A
ALA
39
n
39
ALA
39
A
THR
40
n
40
THR
40
A
GLN
41
n
41
GLN
41
A
SER
42
n
42
SER
42
A
PHE
43
n
43
PHE
43
A
LEU
44
n
44
LEU
44
A
ALA
45
n
45
ALA
45
A
THR
46
n
46
THR
46
A
CYS
47
n
47
CYS
47
A
VAL
48
n
48
VAL
48
A
ASN
49
n
49
ASN
49
A
GLY
50
n
50
GLY
50
A
VAL
51
n
51
VAL
51
A
CYS
52
n
52
CYS
52
A
TRP
53
n
53
TRP
53
A
THR
54
n
54
THR
54
A
VAL
55
n
55
VAL
55
A
TYR
56
n
56
TYR
56
A
HIS
57
n
57
HIS
57
A
GLY
58
n
58
GLY
58
A
ALA
59
n
59
ALA
59
A
GLY
60
n
60
GLY
60
A
SER
61
n
61
SER
61
A
LYS
62
n
62
LYS
62
A
THR
63
n
63
THR
63
A
LEU
64
n
64
LEU
64
A
ALA
65
n
65
ALA
65
A
GLY
66
n
66
GLY
66
A
PRO
67
n
67
PRO
67
A
LYS
68
n
68
LYS
68
A
GLY
69
n
69
GLY
69
A
PRO
70
n
70
PRO
70
A
ILE
71
n
71
ILE
71
A
THR
72
n
72
THR
72
A
GLN
73
n
73
GLN
73
A
MET
74
n
74
MET
74
A
TYR
75
n
75
TYR
75
A
THR
76
n
76
THR
76
A
ASN
77
n
77
ASN
77
A
VAL
78
n
78
VAL
78
A
ASP
79
n
79
ASP
79
A
GLN
80
n
80
GLN
80
A
ASP
81
n
81
ASP
81
A
LEU
82
n
82
LEU
82
A
VAL
83
n
83
VAL
83
A
GLY
84
n
84
GLY
84
A
TRP
85
n
85
TRP
85
A
PRO
86
n
86
PRO
86
A
ALA
87
n
87
ALA
87
A
PRO
88
n
88
PRO
88
A
PRO
89
n
89
PRO
89
A
GLY
90
n
90
GLY
90
A
ALA
91
n
91
ALA
91
A
ARG
92
n
92
ARG
92
A
SER
93
n
93
SER
93
A
MET
94
n
94
MET
94
A
THR
95
n
95
THR
95
A
PRO
96
n
96
PRO
96
A
CYS
97
n
97
CYS
97
A
THR
98
n
98
THR
98
A
CYS
99
n
99
CYS
99
A
GLY
100
n
100
GLY
100
A
SER
101
n
101
SER
101
A
SER
102
n
102
SER
102
A
ASP
103
n
103
ASP
103
A
LEU
104
n
104
LEU
104
A
TYR
105
n
105
TYR
105
A
LEU
106
n
106
LEU
106
A
VAL
107
n
107
VAL
107
A
THR
108
n
108
THR
108
A
ARG
109
n
109
ARG
109
A
HIS
110
n
110
HIS
110
A
ALA
111
n
111
ALA
111
A
ASP
112
n
112
ASP
112
A
VAL
113
n
113
VAL
113
A
ILE
114
n
114
ILE
114
A
PRO
115
n
115
PRO
115
A
VAL
116
n
116
VAL
116
A
ARG
117
n
117
ARG
117
A
ARG
118
n
118
ARG
118
A
ARG
119
n
119
ARG
119
A
GLY
120
n
120
GLY
120
A
ASP
121
n
121
ASP
121
A
SER
122
n
122
SER
122
A
ARG
123
n
123
ARG
123
A
GLY
124
n
124
GLY
124
A
SER
125
n
125
SER
125
A
LEU
126
n
126
LEU
126
A
LEU
127
n
127
LEU
127
A
SER
128
n
128
SER
128
A
PRO
129
n
129
PRO
129
A
ARG
130
n
130
ARG
130
A
PRO
131
n
131
PRO
131
A
VAL
132
n
132
VAL
132
A
SER
133
n
133
SER
133
A
TYR
134
n
134
TYR
134
A
LEU
135
n
135
LEU
135
A
LYS
136
n
136
LYS
136
A
GLY
137
n
137
GLY
137
A
SER
138
n
138
SER
138
A
SER
139
n
139
SER
139
A
GLY
140
n
140
GLY
140
A
GLY
141
n
141
GLY
141
A
PRO
142
n
142
PRO
142
A
LEU
143
n
143
LEU
143
A
LEU
144
n
144
LEU
144
A
CYS
145
n
145
CYS
145
A
PRO
146
n
146
PRO
146
A
SER
147
n
147
SER
147
A
GLY
148
n
148
GLY
148
A
HIS
149
n
149
HIS
149
A
VAL
150
n
150
VAL
150
A
VAL
151
n
151
VAL
151
A
GLY
152
n
152
GLY
152
A
ILE
153
n
153
ILE
153
A
PHE
154
n
154
PHE
154
A
ARG
155
n
155
ARG
155
A
ALA
156
n
156
ALA
156
A
ALA
157
n
157
ALA
157
A
VAL
158
n
158
VAL
158
A
CYS
159
n
159
CYS
159
A
THR
160
n
160
THR
160
A
ARG
161
n
161
ARG
161
A
GLY
162
n
162
GLY
162
A
VAL
163
n
163
VAL
163
A
ALA
164
n
164
ALA
164
A
LYS
165
n
165
LYS
165
A
ALA
166
n
166
ALA
166
A
VAL
167
n
167
VAL
167
A
ASP
168
n
168
ASP
168
A
PHE
169
n
169
PHE
169
A
ILE
170
n
170
ILE
170
A
PRO
171
n
171
PRO
171
A
VAL
172
n
172
VAL
172
A
GLU
173
n
173
GLU
173
A
SER
174
n
174
SER
174
A
MET
175
n
175
MET
175
A
n
176
176
A
n
177
177
A
n
178
178
A
n
179
179
A
n
180
180
A
n
181
181
A
n
182
182
A
n
183
183
A
n
184
184
A
n
185
185
A
n
186
186
A
n
187
187
A
ALA
1
n
1
ALA
1
B
PRO
2
n
2
PRO
2
B
ILE
3
n
3
ILE
3
B
THR
4
n
4
THR
4
B
ALA
5
n
5
ALA
5
B
TYR
6
n
6
TYR
6
B
SER
7
n
7
SER
7
B
GLN
8
n
8
GLN
8
B
GLN
9
n
9
GLN
9
B
THR
10
n
10
THR
10
B
ARG
11
n
11
ARG
11
B
GLY
12
n
12
GLY
12
B
LEU
13
n
13
LEU
13
B
LEU
14
n
14
LEU
14
B
GLY
15
n
15
GLY
15
B
CYS
16
n
16
CYS
16
B
ILE
17
n
17
ILE
17
B
ILE
18
n
18
ILE
18
B
THR
19
n
19
THR
19
B
SER
20
n
20
SER
20
B
LEU
21
n
21
LEU
21
B
THR
22
n
22
THR
22
B
GLY
23
n
23
GLY
23
B
ARG
24
n
24
ARG
24
B
ASP
25
n
25
ASP
25
B
LYS
26
n
26
LYS
26
B
ASN
27
n
27
ASN
27
B
GLN
28
n
28
GLN
28
B
VAL
29
n
29
VAL
29
B
ASP
30
n
30
ASP
30
B
GLY
31
n
31
GLY
31
B
GLU
32
n
32
GLU
32
B
VAL
33
n
33
VAL
33
B
GLN
34
n
34
GLN
34
B
VAL
35
n
35
VAL
35
B
LEU
36
n
36
LEU
36
B
SER
37
n
37
SER
37
B
THR
38
n
38
THR
38
B
ALA
39
n
39
ALA
39
B
THR
40
n
40
THR
40
B
GLN
41
n
41
GLN
41
B
SER
42
n
42
SER
42
B
PHE
43
n
43
PHE
43
B
LEU
44
n
44
LEU
44
B
ALA
45
n
45
ALA
45
B
THR
46
n
46
THR
46
B
CYS
47
n
47
CYS
47
B
VAL
48
n
48
VAL
48
B
ASN
49
n
49
ASN
49
B
GLY
50
n
50
GLY
50
B
VAL
51
n
51
VAL
51
B
CYS
52
n
52
CYS
52
B
TRP
53
n
53
TRP
53
B
THR
54
n
54
THR
54
B
VAL
55
n
55
VAL
55
B
TYR
56
n
56
TYR
56
B
HIS
57
n
57
HIS
57
B
GLY
58
n
58
GLY
58
B
ALA
59
n
59
ALA
59
B
GLY
60
n
60
GLY
60
B
SER
61
n
61
SER
61
B
LYS
62
n
62
LYS
62
B
THR
63
n
63
THR
63
B
LEU
64
n
64
LEU
64
B
ALA
65
n
65
ALA
65
B
GLY
66
n
66
GLY
66
B
PRO
67
n
67
PRO
67
B
LYS
68
n
68
LYS
68
B
GLY
69
n
69
GLY
69
B
PRO
70
n
70
PRO
70
B
ILE
71
n
71
ILE
71
B
THR
72
n
72
THR
72
B
GLN
73
n
73
GLN
73
B
MET
74
n
74
MET
74
B
TYR
75
n
75
TYR
75
B
THR
76
n
76
THR
76
B
ASN
77
n
77
ASN
77
B
VAL
78
n
78
VAL
78
B
ASP
79
n
79
ASP
79
B
GLN
80
n
80
GLN
80
B
ASP
81
n
81
ASP
81
B
LEU
82
n
82
LEU
82
B
VAL
83
n
83
VAL
83
B
GLY
84
n
84
GLY
84
B
TRP
85
n
85
TRP
85
B
PRO
86
n
86
PRO
86
B
ALA
87
n
87
ALA
87
B
PRO
88
n
88
PRO
88
B
PRO
89
n
89
PRO
89
B
GLY
90
n
90
GLY
90
B
ALA
91
n
91
ALA
91
B
ARG
92
n
92
ARG
92
B
SER
93
n
93
SER
93
B
MET
94
n
94
MET
94
B
THR
95
n
95
THR
95
B
PRO
96
n
96
PRO
96
B
CYS
97
n
97
CYS
97
B
THR
98
n
98
THR
98
B
CYS
99
n
99
CYS
99
B
GLY
100
n
100
GLY
100
B
SER
101
n
101
SER
101
B
SER
102
n
102
SER
102
B
ASP
103
n
103
ASP
103
B
LEU
104
n
104
LEU
104
B
TYR
105
n
105
TYR
105
B
LEU
106
n
106
LEU
106
B
VAL
107
n
107
VAL
107
B
THR
108
n
108
THR
108
B
ARG
109
n
109
ARG
109
B
HIS
110
n
110
HIS
110
B
ALA
111
n
111
ALA
111
B
ASP
112
n
112
ASP
112
B
VAL
113
n
113
VAL
113
B
ILE
114
n
114
ILE
114
B
PRO
115
n
115
PRO
115
B
VAL
116
n
116
VAL
116
B
ARG
117
n
117
ARG
117
B
ARG
118
n
118
ARG
118
B
ARG
119
n
119
ARG
119
B
GLY
120
n
120
GLY
120
B
ASP
121
n
121
ASP
121
B
SER
122
n
122
SER
122
B
ARG
123
n
123
ARG
123
B
GLY
124
n
124
GLY
124
B
SER
125
n
125
SER
125
B
LEU
126
n
126
LEU
126
B
LEU
127
n
127
LEU
127
B
SER
128
n
128
SER
128
B
PRO
129
n
129
PRO
129
B
ARG
130
n
130
ARG
130
B
PRO
131
n
131
PRO
131
B
VAL
132
n
132
VAL
132
B
SER
133
n
133
SER
133
B
TYR
134
n
134
TYR
134
B
LEU
135
n
135
LEU
135
B
LYS
136
n
136
LYS
136
B
GLY
137
n
137
GLY
137
B
SER
138
n
138
SER
138
B
SER
139
n
139
SER
139
B
GLY
140
n
140
GLY
140
B
GLY
141
n
141
GLY
141
B
PRO
142
n
142
PRO
142
B
LEU
143
n
143
LEU
143
B
LEU
144
n
144
LEU
144
B
CYS
145
n
145
CYS
145
B
PRO
146
n
146
PRO
146
B
SER
147
n
147
SER
147
B
GLY
148
n
148
GLY
148
B
HIS
149
n
149
HIS
149
B
VAL
150
n
150
VAL
150
B
VAL
151
n
151
VAL
151
B
GLY
152
n
152
GLY
152
B
ILE
153
n
153
ILE
153
B
PHE
154
n
154
PHE
154
B
ARG
155
n
155
ARG
155
B
ALA
156
n
156
ALA
156
B
ALA
157
n
157
ALA
157
B
VAL
158
n
158
VAL
158
B
CYS
159
n
159
CYS
159
B
THR
160
n
160
THR
160
B
ARG
161
n
161
ARG
161
B
GLY
162
n
162
GLY
162
B
VAL
163
n
163
VAL
163
B
ALA
164
n
164
ALA
164
B
LYS
165
n
165
LYS
165
B
ALA
166
n
166
ALA
166
B
VAL
167
n
167
VAL
167
B
ASP
168
n
168
ASP
168
B
PHE
169
n
169
PHE
169
B
ILE
170
n
170
ILE
170
B
PRO
171
n
171
PRO
171
B
VAL
172
n
172
VAL
172
B
GLU
173
n
173
GLU
173
B
SER
174
n
174
SER
174
B
MET
175
n
175
MET
175
B
n
176
176
B
n
177
177
B
n
178
178
B
n
179
179
B
n
180
180
B
n
181
181
B
n
182
182
B
n
183
183
B
n
184
184
B
n
185
185
B
n
186
186
B
n
187
187
B
n
1
220
C
GLY
221
n
2
GLY
221
C
SER
222
n
3
SER
222
C
VAL
223
n
4
VAL
223
C
VAL
224
n
5
VAL
224
C
ILE
225
n
6
ILE
225
C
VAL
226
n
7
VAL
226
C
GLY
227
n
8
GLY
227
C
ARG
228
n
9
ARG
228
C
ILE
229
n
10
ILE
229
C
ILE
230
n
11
ILE
230
C
LEU
231
n
12
LEU
231
C
SER
232
n
13
SER
232
C
n
14
233
C
n
15
234
C
n
16
235
C
n
1
220
D
GLY
221
n
2
GLY
221
D
SER
222
n
3
SER
222
D
VAL
223
n
4
VAL
223
D
VAL
224
n
5
VAL
224
D
ILE
225
n
6
ILE
225
D
VAL
226
n
7
VAL
226
D
GLY
227
n
8
GLY
227
D
ARG
228
n
9
ARG
228
D
ILE
229
n
10
ILE
229
D
ILE
230
n
11
ILE
230
D
LEU
231
n
12
LEU
231
D
SER
232
n
13
SER
232
D
n
14
233
D
n
15
234
D
n
16
235
D
3OY
1
n
1
PPI
1
E
3OY
1
n
2
DAL
2
E
3OY
1
n
3
0Y8
3
E
3OY
1
n
4
0Y9
4
E
3OY
1
n
5
0YA
5
E
3OY
2
n
1
PPI
1
F
3OY
2
n
2
DAL
2
F
3OY
2
n
3
0Y8
3
F
3OY
2
n
4
0Y9
4
F
3OY
2
n
5
0YA
5
F
author_and_software_defined_assembly
PISA
3
trimeric
author_and_software_defined_assembly
PISA
3
trimeric
3650
-48
8270
3710
-47
8190
E
0Y8
3
E
0Y8
3
PRO
F
0Y8
3
F
0Y8
3
PRO
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
4
A
N
THR
4
C
O
SER
232
C
O
SER
13
C
O
GLY
227
C
O
GLY
8
A
N
VAL
35
A
N
VAL
35
A
N
LEU
36
A
N
LEU
36
A
O
PHE
43
A
O
PHE
43
A
N
THR
46
A
N
THR
46
A
O
TRP
53
A
O
TRP
53
A
N
THR
54
A
N
THR
54
A
O
VAL
83
A
O
VAL
83
A
O
LEU
82
A
O
LEU
82
A
N
ASN
77
A
N
ASN
77
A
N
LEU
64
A
N
LEU
64
A
O
ILE
71
A
O
ILE
71
A
N
LEU
106
A
N
LEU
106
A
O
ILE
114
A
O
ILE
114
A
N
ARG
117
A
N
ARG
117
A
O
SER
125
A
O
SER
125
A
N
GLY
124
A
N
GLY
124
A
O
VAL
167
A
O
VAL
167
A
O
ASP
168
A
O
ASP
168
A
N
ALA
156
A
N
ALA
156
A
O
VAL
151
A
O
VAL
151
A
N
LEU
143
A
N
LEU
143
A
O
LEU
144
A
O
LEU
144
A
N
TYR
105
A
N
TYR
105
B
N
GLN
8
B
N
GLN
8
D
O
ARG
228
D
O
ARG
9
D
O
VAL
226
D
O
VAL
7
B
N
VAL
35
B
N
VAL
35
B
N
GLN
34
B
N
GLN
34
B
O
ALA
45
B
O
ALA
45
B
N
THR
46
B
N
THR
46
B
O
TRP
53
B
O
TRP
53
B
N
THR
54
B
N
THR
54
B
O
VAL
83
B
O
VAL
83
B
O
LEU
82
B
O
LEU
82
B
N
ASN
77
B
N
ASN
77
B
N
LEU
64
B
N
LEU
64
B
O
ILE
71
B
O
ILE
71
B
N
LEU
104
B
N
LEU
104
B
O
VAL
116
B
O
VAL
116
B
N
ARG
117
B
N
ARG
117
B
O
SER
125
B
O
SER
125
B
N
ARG
130
B
N
ARG
130
B
O
ALA
164
B
O
ALA
164
B
O
ASP
168
B
O
ASP
168
B
N
ALA
156
B
N
ALA
156
B
O
HIS
149
B
O
HIS
149
B
N
CYS
145
B
N
CYS
145
B
O
LEU
144
B
O
LEU
144
B
N
TYR
105
B
N
TYR
105
1
A
ALA
1
A
ALA
1
1
Y
1
A
GLU
176
A
GLU
176
1
Y
1
A
THR
177
A
THR
177
1
Y
1
A
THR
178
A
THR
178
1
Y
1
A
MET
179
A
MET
179
1
Y
1
A
ARG
180
A
ARG
180
1
Y
1
A
SER
181
A
SER
181
1
Y
1
A
PRO
182
A
PRO
182
1
Y
1
A
VAL
183
A
VAL
183
1
Y
1
A
PHE
184
A
PHE
184
1
Y
1
A
THR
185
A
THR
185
1
Y
1
A
ASP
186
A
ASP
186
1
Y
1
A
ASN
187
A
ASN
187
1
Y
1
B
GLU
176
B
GLU
176
1
Y
1
B
THR
177
B
THR
177
1
Y
1
B
THR
178
B
THR
178
1
Y
1
B
MET
179
B
MET
179
1
Y
1
B
ARG
180
B
ARG
180
1
Y
1
B
SER
181
B
SER
181
1
Y
1
B
PRO
182
B
PRO
182
1
Y
1
B
VAL
183
B
VAL
183
1
Y
1
B
PHE
184
B
PHE
184
1
Y
1
B
THR
185
B
THR
185
1
Y
1
B
ASP
186
B
ASP
186
1
Y
1
B
ASN
187
B
ASN
187
1
Y
1
C
LYS
220
C
LYS
1
1
Y
1
C
GLY
233
C
GLY
14
1
Y
1
C
ARG
234
C
ARG
15
1
Y
1
C
LYS
235
C
LYS
16
1
Y
1
D
LYS
220
D
LYS
1
1
Y
1
D
GLY
233
D
GLY
14
1
Y
1
D
ARG
234
D
ARG
15
1
Y
1
D
LYS
235
D
LYS
16
1
Y
1
7.22
1.10
114.20
121.42
B
B
B
CA
CB
SG
CYS
CYS
CYS
145
145
145
N
1
A
THR
38
-124.59
-157.92
1
A
CYS
99
-156.96
-26.80
1
B
THR
38
-123.76
-163.69
1
B
PHE
43
-165.60
-169.85
1
B
SER
147
-97.47
35.80
36.827
0.18
0.09
0.00
0.18
0.00
-0.27
0.914
0.849
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.27360
0.21483
0.22271
0.21892
2.76
81.65
762
10158
10158
7.0
99.97
16.216
0.319
RANDOM
1
THROUGHOUT
0.0
0
OTHER
0.408
0.80
0.80
1.20
1DXP
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.76
81.65
10
2827
2
0
2815
0.006
0.022
2878
0.005
0.020
2687
1.181
2.011
3934
3.427
3.000
6224
5.522
5.000
369
27.592
21.778
90
15.943
15.000
436
13.551
15.000
24
0.056
0.200
459
0.003
0.020
3162
0.001
0.020
558
0.181
0.200
574
0.176
0.200
2707
0.167
0.200
1417
0.082
0.200
1647
0.320
0.200
86
0.035
0.200
2
0.095
0.200
11
0.145
0.200
68
0.082
0.200
4
1.195
2.000
2362
0.156
2.000
772
1.514
3.000
2984
2.194
4.000
1213
3.035
6.000
938
0.352
0.311
2.832
67
738
20
99.88
2.76
81.65
3OYP
10926
10926
0
0.0
0.123
1
6.7
98.9
0.643
2.76
2.90
1
6.9
92.6
data scaling
XDS
phasing
MOLREP
refinement
REFMAC
5.2.0005
data reduction
XDS
data scaling
XSCALE
HCV NS3/4A in complex with ligand 3
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
A
GLY
12
A
GLY
12
HELX_P
A
GLY
23
A
GLY
23
1
1
12
A
VAL
55
A
VAL
55
HELX_P
A
GLY
60
A
GLY
60
1
2
6
A
VAL
132
A
VAL
132
HELX_P
A
LYS
136
A
LYS
136
1
3
5
A
GLU
173
A
GLU
173
HELX_P
A
MET
175
A
MET
175
5
4
3
B
GLY
12
B
GLY
12
HELX_P
B
GLY
23
B
GLY
23
1
5
12
B
TYR
56
B
TYR
56
HELX_P
B
GLY
60
B
GLY
60
1
6
5
B
VAL
132
B
VAL
132
HELX_P
B
LYS
136
B
LYS
136
1
7
5
B
GLU
173
B
GLU
173
HELX_P
B
MET
175
B
MET
175
5
8
3
disulf
2.056
B
CYS
99
B
SG
CYS
99
1_555
B
CYS
145
B
SG
CYS
145
1_555
covale
1.810
none
A
CYS
159
A
SG
CYS
159
1_555
E
PPI
1
E
C3
PPI
1
1_555
covale
1.809
none
B
CYS
159
B
SG
CYS
159
1_555
F
PPI
1
F
C3
PPI
1
1_555
covale
1.385
both
sing
E
PPI
1
E
C1
PPI
1
1_555
E
DAL
2
E
N
DAL
2
1_555
covale
1.406
both
sing
E
DAL
2
E
C
DAL
2
1_555
E
0Y8
3
E
N
0Y8
3
1_555
covale
1.390
both
sing
E
0Y8
3
E
C
0Y8
3
1_555
E
0Y9
4
E
N
0Y9
4
1_555
covale
1.377
both
sing
E
0Y9
4
E
C
0Y9
4
1_555
E
0YA
5
E
N28
0YA
5
1_555
covale
1.380
both
sing
F
PPI
1
F
C1
PPI
1
1_555
F
DAL
2
F
N
DAL
2
1_555
covale
1.406
both
sing
F
DAL
2
F
C
DAL
2
1_555
F
0Y8
3
F
N
0Y8
3
1_555
covale
1.382
both
sing
F
0Y8
3
F
C
0Y8
3
1_555
F
0Y9
4
F
N
0Y9
4
1_555
covale
1.376
both
sing
F
0Y9
4
F
C
0Y9
4
1_555
F
0YA
5
F
N28
0YA
5
1_555
HYDROLASE/HYDROLASE INHIBITOR
SERINE PROTEASE, NS3, NS4A, HEPATITIS C VIRUS, PROTEASE INHIBITION, HYDROLASE-HYDROLASE INHIBITOR complex
POLG_HCVJA
UNP
1
1027
P26662
APITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQ
DLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVVPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPSGHVVGIFRAAVCT
RGVAKAVDFIPVESMETTMRSPVFTDN
POLG_HCVJA
UNP
2
1677
P26662
GSVVIVGRIILSGR
3OYP
PDB
3
1
3OYP
XAPXX
1027
1213
3OYP
1
187
P26662
A
1
1
187
1027
1213
3OYP
1
187
P26662
B
1
1
187
1677
1690
3OYP
221
234
P26662
C
2
2
15
1677
1690
3OYP
221
234
P26662
D
2
2
15
1
5
3OYP
1
5
3OYP
E
3
1
5
1
5
3OYP
1
5
3OYP
F
3
1
5
1
VAL
variant
ILE
114
3OYP
A
P26662
UNP
1140
114
1
ILE
variant
VAL
132
3OYP
A
P26662
UNP
1158
132
2
VAL
variant
ILE
114
3OYP
B
P26662
UNP
1140
114
2
ILE
variant
VAL
132
3OYP
B
P26662
UNP
1158
132
3
expression tag
LYS
220
3OYP
C
P26662
UNP
1
3
expression tag
LYS
235
3OYP
C
P26662
UNP
16
4
expression tag
LYS
220
3OYP
D
P26662
UNP
1
4
expression tag
LYS
235
3OYP
D
P26662
UNP
16
7
2
7
7
2
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
4
A
THR
4
A
GLN
9
A
GLN
9
C
VAL
224
C
VAL
5
C
SER
232
C
SER
13
A
VAL
33
A
VAL
33
A
SER
37
A
SER
37
A
SER
42
A
SER
42
A
CYS
47
A
CYS
47
A
VAL
51
A
VAL
51
A
THR
54
A
THR
54
A
LEU
82
A
LEU
82
A
PRO
86
A
PRO
86
A
TYR
75
A
TYR
75
A
ASN
77
A
ASN
77
A
LEU
64
A
LEU
64
A
ALA
65
A
ALA
65
A
PRO
70
A
PRO
70
A
ILE
71
A
ILE
71
A
ASP
103
A
ASP
103
A
VAL
107
A
VAL
107
A
VAL
113
A
VAL
113
A
GLY
120
A
GLY
120
A
ARG
123
A
ARG
123
A
PRO
131
A
PRO
131
A
VAL
163
A
VAL
163
A
PRO
171
A
PRO
171
A
VAL
150
A
VAL
150
A
THR
160
A
THR
160
A
PRO
142
A
PRO
142
A
LEU
144
A
LEU
144
A
ASP
103
A
ASP
103
A
VAL
107
A
VAL
107
B
THR
4
B
THR
4
B
GLN
9
B
GLN
9
D
VAL
224
D
VAL
5
D
SER
232
D
SER
13
B
VAL
33
B
VAL
33
B
SER
37
B
SER
37
B
SER
42
B
SER
42
B
CYS
47
B
CYS
47
B
VAL
51
B
VAL
51
B
VAL
55
B
VAL
55
B
LEU
82
B
LEU
82
B
PRO
86
B
PRO
86
B
TYR
75
B
TYR
75
B
ASN
77
B
ASN
77
B
LEU
64
B
LEU
64
B
GLY
66
B
GLY
66
B
GLY
69
B
GLY
69
B
ILE
71
B
ILE
71
B
ASP
103
B
ASP
103
B
VAL
107
B
VAL
107
B
VAL
113
B
VAL
113
B
ARG
118
B
ARG
118
B
ARG
123
B
ARG
123
B
PRO
131
B
PRO
131
B
VAL
163
B
VAL
163
B
PRO
171
B
PRO
171
B
HIS
149
B
HIS
149
B
THR
160
B
THR
160
B
PRO
142
B
PRO
142
B
CYS
145
B
CYS
145
B
ASP
103
B
ASP
103
B
VAL
107
B
VAL
107
BINDING SITE FOR RESIDUE ZN A 201
A
ZN
201
Software
4
BINDING SITE FOR RESIDUE ZN B 201
B
ZN
201
Software
4
BINDING SITE FOR CHAIN E OF PEPTIDOMIMETIC INHIBITOR
Software
16
BINDING SITE FOR CHAIN F OF PEPTIDOMIMETIC INHIBITOR
Software
15
A
CYS
97
A
CYS
97
4
1_555
A
CYS
99
A
CYS
99
4
1_555
A
CYS
145
A
CYS
145
4
1_555
A
HOH
305
I
HOH
4
1_555
B
CYS
97
B
CYS
97
4
1_555
B
THR
98
B
THR
98
4
1_555
B
CYS
99
B
CYS
99
4
1_555
B
CYS
145
B
CYS
145
4
1_555
A
GLN
41
A
GLN
41
16
1_555
A
PHE
43
A
PHE
43
16
1_555
A
HIS
57
A
HIS
57
16
1_555
A
GLY
58
A
GLY
58
16
1_555
A
ASP
81
A
ASP
81
16
1_555
A
VAL
132
A
VAL
132
16
1_555
A
LEU
135
A
LEU
135
16
1_555
A
LYS
136
A
LYS
136
16
1_555
A
GLY
137
A
GLY
137
16
1_555
A
SER
138
A
SER
138
16
1_555
A
SER
139
A
SER
139
16
1_555
A
PHE
154
A
PHE
154
16
1_555
A
ARG
155
A
ARG
155
16
1_555
A
ALA
156
A
ALA
156
16
1_555
A
ALA
157
A
ALA
157
16
1_555
A
CYS
159
A
CYS
159
16
1_555
B
GLN
41
B
GLN
41
15
1_555
B
SER
42
B
SER
42
15
1_555
B
PHE
43
B
PHE
43
15
1_555
B
HIS
57
B
HIS
57
15
1_555
B
ASP
81
B
ASP
81
15
1_555
B
LEU
135
B
LEU
135
15
1_555
B
LYS
136
B
LYS
136
15
1_555
B
GLY
137
B
GLY
137
15
1_555
B
SER
138
B
SER
138
15
1_555
B
SER
139
B
SER
139
15
1_555
B
PHE
154
B
PHE
154
15
1_555
B
ARG
155
B
ARG
155
15
1_555
B
ALA
156
B
ALA
156
15
1_555
B
ALA
157
B
ALA
157
15
1_555
B
CYS
159
B
CYS
159
15
1_555
169
P 61