0.015184
0.000000
0.000000
0.000000
0.005313
0.000000
0.000000
0.000000
0.015038
0.000000
0.000000
0.000000
Seattle Structural Genomics Center for Infectious Disease (SSGCID)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
65.860
188.220
66.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H15 N5 O11 P2
443.201
n
GUANOSINE-5'-DIPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O4
150.173
TRIETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
P
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
C
N
84
R
C
N
85
N
O
N
86
S
C
N
87
N
O
N
88
R
C
N
89
N
O
N
90
R
C
Y
91
N
N
Y
92
N
C
Y
93
N
N
Y
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
C
N
99
N
N
N
100
N
N
Y
101
N
C
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
O
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
O
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
N
C
N
158
N
C
N
159
N
O
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
Y
171
N
C
Y
172
N
N
Y
173
N
C
Y
174
N
C
Y
175
N
N
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
S
C
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
N
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
S
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
N
348
N
O
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
R
C
N
362
N
O
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
N
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
O
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
N
C
N
430
N
C
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
Y
99
N
sing
Y
100
N
sing
Y
101
N
doub
N
102
N
sing
Y
103
N
sing
N
104
N
sing
Y
105
N
doub
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
Y
172
N
sing
Y
173
N
doub
Y
174
N
doub
N
175
N
sing
Y
176
N
sing
N
177
N
sing
Y
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
Y
303
N
doub
Y
304
N
sing
Y
305
N
sing
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
doub
Y
377
N
sing
Y
378
N
sing
N
379
N
sing
Y
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
doub
N
407
N
sing
Y
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
NE
J.Struct.Funct.Genom.
1345-711X
16
91
99
10.1007/s10969-015-9197-2
25832174
Crystal structures of Mycobacterial MeaB and MMAA-like GTPases.
2015
10.2210/pdb3p32/pdb
pdb_00003p32
100
1
CCD
2010-05-21
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
0.97946
1.0
5.0.1
ALS
0.97946
SYNCHROTRON
ALS BEAMLINE 5.0.1
38596.938
Probable GTPase Rv1496/MT1543
3.6.-.-
1
man
polymer
443.201
GUANOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
150.173
TRIETHYLENE GLYCOL
2
syn
non-polymer
18.015
water
140
nat
water
no
no
MAHHHHHHMGTLEAQTQGPGSMMAASHDDDTVDGLATAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAH
RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRAT
RETVVLLEAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAAR
ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDARRRDQQVDWTWQLVRDAVLDRVWSNPT
VRKVRSELERRVRAGELTPALAAQQILEIANLTDR
MAHHHHHHMGTLEAQTQGPGSMMAASHDDDTVDGLATAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAH
RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRAT
RETVVLLEAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAAR
ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDARRRDQQVDWTWQLVRDAVLDRVWSNPT
VRKVRSELERRVRAGELTPALAAQQILEIANLTDR
A
MytuD.00200.a
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
MT1543, MTCY277.18, Rv1496
1773
Mycobacterium tuberculosis
562
Escherichia coli
AVA0421
1
2.67
53.93
VAPOR DIFFUSION, SITTING DROP
6.2
22.0 mg/mL MytuD00200aA1 PW25862 against 48% PEG 200, 0.1 M Na/K phosphate pH 6.2, 0.2 M NaCl, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
Seattle Structural Genomics Center for Infectious Disease
SSGCID
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-11-10
1
1
2011-07-13
1
2
2015-04-22
1
3
2015-06-03
1
4
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Structure crystallized in the presence of GDP
Structure of same protein from Mycobacterium smegatis bound to GDP
MeaB, A Bacterial Homolog of MMAA, Bound to GDP
Human Methylmalonic Acidemia Type a Protein MMAA
Y
RCSB
Y
RCSB
2010-10-04
REL
REL
GDP
GUANOSINE-5'-DIPHOSPHATE
PGE
TRIETHYLENE GLYCOL
HOH
water
3MDO
PDB ENTRY 3MDO
PDB
experimental model
GDP
335
2
GDP
GDP
335
A
PGE
336
3
PGE
PGE
336
A
PGE
337
3
PGE
PGE
337
A
HOH
1
4
HOH
HOH
338
A
HOH
2
4
HOH
HOH
339
A
HOH
3
4
HOH
HOH
340
A
HOH
4
4
HOH
HOH
341
A
HOH
5
4
HOH
HOH
342
A
HOH
6
4
HOH
HOH
343
A
HOH
7
4
HOH
HOH
344
A
HOH
8
4
HOH
HOH
345
A
HOH
9
4
HOH
HOH
346
A
HOH
10
4
HOH
HOH
347
A
HOH
11
4
HOH
HOH
348
A
HOH
12
4
HOH
HOH
349
A
HOH
13
4
HOH
HOH
350
A
HOH
14
4
HOH
HOH
351
A
HOH
15
4
HOH
HOH
352
A
HOH
16
4
HOH
HOH
353
A
HOH
17
4
HOH
HOH
354
A
HOH
18
4
HOH
HOH
355
A
HOH
19
4
HOH
HOH
356
A
HOH
20
4
HOH
HOH
357
A
HOH
21
4
HOH
HOH
358
A
HOH
22
4
HOH
HOH
359
A
HOH
23
4
HOH
HOH
360
A
HOH
24
4
HOH
HOH
361
A
HOH
25
4
HOH
HOH
362
A
HOH
26
4
HOH
HOH
363
A
HOH
27
4
HOH
HOH
364
A
HOH
28
4
HOH
HOH
365
A
HOH
29
4
HOH
HOH
366
A
HOH
30
4
HOH
HOH
367
A
HOH
31
4
HOH
HOH
368
A
HOH
32
4
HOH
HOH
369
A
HOH
33
4
HOH
HOH
370
A
HOH
34
4
HOH
HOH
371
A
HOH
35
4
HOH
HOH
372
A
HOH
36
4
HOH
HOH
373
A
HOH
37
4
HOH
HOH
374
A
HOH
38
4
HOH
HOH
375
A
HOH
39
4
HOH
HOH
376
A
HOH
40
4
HOH
HOH
377
A
HOH
41
4
HOH
HOH
378
A
HOH
42
4
HOH
HOH
379
A
HOH
43
4
HOH
HOH
380
A
HOH
44
4
HOH
HOH
381
A
HOH
45
4
HOH
HOH
382
A
HOH
46
4
HOH
HOH
383
A
HOH
47
4
HOH
HOH
384
A
HOH
48
4
HOH
HOH
385
A
HOH
49
4
HOH
HOH
386
A
HOH
50
4
HOH
HOH
387
A
HOH
51
4
HOH
HOH
388
A
HOH
52
4
HOH
HOH
389
A
HOH
53
4
HOH
HOH
390
A
HOH
54
4
HOH
HOH
391
A
HOH
55
4
HOH
HOH
392
A
HOH
56
4
HOH
HOH
393
A
HOH
57
4
HOH
HOH
394
A
HOH
58
4
HOH
HOH
395
A
HOH
59
4
HOH
HOH
396
A
HOH
60
4
HOH
HOH
397
A
HOH
61
4
HOH
HOH
398
A
HOH
62
4
HOH
HOH
399
A
HOH
63
4
HOH
HOH
400
A
HOH
64
4
HOH
HOH
401
A
HOH
65
4
HOH
HOH
402
A
HOH
66
4
HOH
HOH
403
A
HOH
67
4
HOH
HOH
404
A
HOH
68
4
HOH
HOH
405
A
HOH
69
4
HOH
HOH
406
A
HOH
70
4
HOH
HOH
407
A
HOH
71
4
HOH
HOH
408
A
HOH
72
4
HOH
HOH
409
A
HOH
73
4
HOH
HOH
410
A
HOH
74
4
HOH
HOH
411
A
HOH
75
4
HOH
HOH
412
A
HOH
76
4
HOH
HOH
413
A
HOH
77
4
HOH
HOH
414
A
HOH
78
4
HOH
HOH
415
A
HOH
79
4
HOH
HOH
416
A
HOH
80
4
HOH
HOH
417
A
HOH
81
4
HOH
HOH
418
A
HOH
82
4
HOH
HOH
419
A
HOH
83
4
HOH
HOH
420
A
HOH
84
4
HOH
HOH
421
A
HOH
85
4
HOH
HOH
422
A
HOH
86
4
HOH
HOH
423
A
HOH
87
4
HOH
HOH
424
A
HOH
88
4
HOH
HOH
425
A
HOH
89
4
HOH
HOH
426
A
HOH
90
4
HOH
HOH
427
A
HOH
91
4
HOH
HOH
428
A
HOH
92
4
HOH
HOH
429
A
HOH
93
4
HOH
HOH
430
A
HOH
94
4
HOH
HOH
431
A
HOH
95
4
HOH
HOH
432
A
HOH
96
4
HOH
HOH
433
A
HOH
97
4
HOH
HOH
434
A
HOH
98
4
HOH
HOH
435
A
HOH
99
4
HOH
HOH
436
A
HOH
100
4
HOH
HOH
437
A
HOH
101
4
HOH
HOH
438
A
HOH
102
4
HOH
HOH
439
A
HOH
103
4
HOH
HOH
440
A
HOH
104
4
HOH
HOH
441
A
HOH
105
4
HOH
HOH
442
A
HOH
106
4
HOH
HOH
443
A
HOH
107
4
HOH
HOH
444
A
HOH
108
4
HOH
HOH
445
A
HOH
109
4
HOH
HOH
446
A
HOH
110
4
HOH
HOH
447
A
HOH
111
4
HOH
HOH
448
A
HOH
112
4
HOH
HOH
449
A
HOH
113
4
HOH
HOH
450
A
HOH
114
4
HOH
HOH
451
A
HOH
115
4
HOH
HOH
452
A
HOH
116
4
HOH
HOH
453
A
HOH
117
4
HOH
HOH
454
A
HOH
118
4
HOH
HOH
455
A
HOH
119
4
HOH
HOH
456
A
HOH
120
4
HOH
HOH
457
A
HOH
121
4
HOH
HOH
458
A
HOH
122
4
HOH
HOH
459
A
HOH
123
4
HOH
HOH
460
A
HOH
124
4
HOH
HOH
461
A
HOH
125
4
HOH
HOH
462
A
HOH
126
4
HOH
HOH
463
A
HOH
127
4
HOH
HOH
464
A
HOH
128
4
HOH
HOH
465
A
HOH
129
4
HOH
HOH
466
A
HOH
130
4
HOH
HOH
467
A
HOH
131
4
HOH
HOH
468
A
HOH
132
4
HOH
HOH
469
A
HOH
133
4
HOH
HOH
470
A
HOH
134
4
HOH
HOH
471
A
HOH
135
4
HOH
HOH
472
A
HOH
136
4
HOH
HOH
473
A
HOH
137
4
HOH
HOH
474
A
HOH
138
4
HOH
HOH
475
A
HOH
139
4
HOH
HOH
476
A
HOH
140
4
HOH
HOH
477
A
n
1
-20
A
n
2
-19
A
n
3
-18
A
n
4
-17
A
n
5
-16
A
n
6
-15
A
n
7
-14
A
n
8
-13
A
n
9
-12
A
n
10
-11
A
n
11
-10
A
n
12
-9
A
n
13
-8
A
n
14
-7
A
n
15
-6
A
n
16
-5
A
n
17
-4
A
n
18
-3
A
n
19
-2
A
n
20
-1
A
n
21
0
A
n
22
1
A
n
23
2
A
n
24
3
A
n
25
4
A
n
26
5
A
n
27
6
A
n
28
7
A
n
29
8
A
n
30
9
A
THR
10
n
31
THR
10
A
VAL
11
n
32
VAL
11
A
ASP
12
n
33
ASP
12
A
GLY
13
n
34
GLY
13
A
LEU
14
n
35
LEU
14
A
ALA
15
n
36
ALA
15
A
THR
16
n
37
THR
16
A
ALA
17
n
38
ALA
17
A
VAL
18
n
39
VAL
18
A
ARG
19
n
40
ARG
19
A
GLY
20
n
41
GLY
20
A
GLY
21
n
42
GLY
21
A
ASP
22
n
43
ASP
22
A
ARG
23
n
44
ARG
23
A
ALA
24
n
45
ALA
24
A
ALA
25
n
46
ALA
25
A
LEU
26
n
47
LEU
26
A
PRO
27
n
48
PRO
27
A
ARG
28
n
49
ARG
28
A
ALA
29
n
50
ALA
29
A
ILE
30
n
51
ILE
30
A
THR
31
n
52
THR
31
A
LEU
32
n
53
LEU
32
A
VAL
33
n
54
VAL
33
A
GLU
34
n
55
GLU
34
A
SER
35
n
56
SER
35
A
THR
36
n
57
THR
36
A
ARG
37
n
58
ARG
37
A
PRO
38
n
59
PRO
38
A
ASP
39
n
60
ASP
39
A
HIS
40
n
61
HIS
40
A
ARG
41
n
62
ARG
41
A
GLU
42
n
63
GLU
42
A
GLN
43
n
64
GLN
43
A
ALA
44
n
65
ALA
44
A
GLN
45
n
66
GLN
45
A
GLN
46
n
67
GLN
46
A
LEU
47
n
68
LEU
47
A
LEU
48
n
69
LEU
48
A
LEU
49
n
70
LEU
49
A
ARG
50
n
71
ARG
50
A
LEU
51
n
72
LEU
51
A
LEU
52
n
73
LEU
52
A
PRO
53
n
74
PRO
53
A
ASP
54
n
75
ASP
54
A
SER
55
n
76
SER
55
A
GLY
56
n
77
GLY
56
A
ASN
57
n
78
ASN
57
A
ALA
58
n
79
ALA
58
A
HIS
59
n
80
HIS
59
A
ARG
60
n
81
ARG
60
A
VAL
61
n
82
VAL
61
A
GLY
62
n
83
GLY
62
A
ILE
63
n
84
ILE
63
A
THR
64
n
85
THR
64
A
GLY
65
n
86
GLY
65
A
VAL
66
n
87
VAL
66
A
PRO
67
n
88
PRO
67
A
GLY
68
n
89
GLY
68
A
VAL
69
n
90
VAL
69
A
GLY
70
n
91
GLY
70
A
LYS
71
n
92
LYS
71
A
SER
72
n
93
SER
72
A
THR
73
n
94
THR
73
A
ALA
74
n
95
ALA
74
A
ILE
75
n
96
ILE
75
A
GLU
76
n
97
GLU
76
A
ALA
77
n
98
ALA
77
A
LEU
78
n
99
LEU
78
A
GLY
79
n
100
GLY
79
A
MET
80
n
101
MET
80
A
HIS
81
n
102
HIS
81
A
LEU
82
n
103
LEU
82
A
ILE
83
n
104
ILE
83
A
GLU
84
n
105
GLU
84
A
ARG
85
n
106
ARG
85
A
GLY
86
n
107
GLY
86
A
HIS
87
n
108
HIS
87
A
ARG
88
n
109
ARG
88
A
VAL
89
n
110
VAL
89
A
ALA
90
n
111
ALA
90
A
VAL
91
n
112
VAL
91
A
LEU
92
n
113
LEU
92
A
ALA
93
n
114
ALA
93
A
VAL
94
n
115
VAL
94
A
ASP
95
n
116
ASP
95
A
n
117
96
A
n
118
97
A
n
119
98
A
n
120
99
A
n
121
100
A
n
122
101
A
n
123
102
A
n
124
103
A
n
125
104
A
n
126
105
A
n
127
106
A
n
128
107
A
n
129
108
A
n
130
109
A
n
131
110
A
n
132
111
A
MET
112
n
133
MET
112
A
ALA
113
n
134
ALA
113
A
ARG
114
n
135
ARG
114
A
LEU
115
n
136
LEU
115
A
ALA
116
n
137
ALA
116
A
VAL
117
n
138
VAL
117
A
HIS
118
n
139
HIS
118
A
PRO
119
n
140
PRO
119
A
ASN
120
n
141
ASN
120
A
ALA
121
n
142
ALA
121
A
TYR
122
n
143
TYR
122
A
ILE
123
n
144
ILE
123
A
ARG
124
n
145
ARG
124
A
PRO
125
n
146
PRO
125
A
SER
126
n
147
SER
126
A
PRO
127
n
148
PRO
127
A
n
149
128
A
n
150
129
A
GLY
130
n
151
GLY
130
A
THR
131
n
152
THR
131
A
LEU
132
n
153
LEU
132
A
GLY
133
n
154
GLY
133
A
GLY
134
n
155
GLY
134
A
VAL
135
n
156
VAL
135
A
THR
136
n
157
THR
136
A
ARG
137
n
158
ARG
137
A
ALA
138
n
159
ALA
138
A
THR
139
n
160
THR
139
A
ARG
140
n
161
ARG
140
A
GLU
141
n
162
GLU
141
A
THR
142
n
163
THR
142
A
VAL
143
n
164
VAL
143
A
VAL
144
n
165
VAL
144
A
LEU
145
n
166
LEU
145
A
LEU
146
n
167
LEU
146
A
GLU
147
n
168
GLU
147
A
ALA
148
n
169
ALA
148
A
ALA
149
n
170
ALA
149
A
GLY
150
n
171
GLY
150
A
PHE
151
n
172
PHE
151
A
ASP
152
n
173
ASP
152
A
VAL
153
n
174
VAL
153
A
ILE
154
n
175
ILE
154
A
LEU
155
n
176
LEU
155
A
ILE
156
n
177
ILE
156
A
GLU
157
n
178
GLU
157
A
THR
158
n
179
THR
158
A
VAL
159
n
180
VAL
159
A
GLY
160
n
181
GLY
160
A
VAL
161
n
182
VAL
161
A
GLY
162
n
183
GLY
162
A
GLN
163
n
184
GLN
163
A
SER
164
n
185
SER
164
A
GLU
165
n
186
GLU
165
A
VAL
166
n
187
VAL
166
A
ALA
167
n
188
ALA
167
A
VAL
168
n
189
VAL
168
A
ALA
169
n
190
ALA
169
A
ASN
170
n
191
ASN
170
A
MET
171
n
192
MET
171
A
VAL
172
n
193
VAL
172
A
ASP
173
n
194
ASP
173
A
THR
174
n
195
THR
174
A
PHE
175
n
196
PHE
175
A
VAL
176
n
197
VAL
176
A
LEU
177
n
198
LEU
177
A
LEU
178
n
199
LEU
178
A
THR
179
n
200
THR
179
A
LEU
180
n
201
LEU
180
A
ALA
181
n
202
ALA
181
A
ARG
182
n
203
ARG
182
A
THR
183
n
204
THR
183
A
GLY
184
n
205
GLY
184
A
ASP
185
n
206
ASP
185
A
GLN
186
n
207
GLN
186
A
LEU
187
n
208
LEU
187
A
GLN
188
n
209
GLN
188
A
GLY
189
n
210
GLY
189
A
ILE
190
n
211
ILE
190
A
LYS
191
n
212
LYS
191
A
LYS
192
n
213
LYS
192
A
GLY
193
n
214
GLY
193
A
VAL
194
n
215
VAL
194
A
LEU
195
n
216
LEU
195
A
GLU
196
n
217
GLU
196
A
LEU
197
n
218
LEU
197
A
ALA
198
n
219
ALA
198
A
ASP
199
n
220
ASP
199
A
ILE
200
n
221
ILE
200
A
VAL
201
n
222
VAL
201
A
VAL
202
n
223
VAL
202
A
VAL
203
n
224
VAL
203
A
ASN
204
n
225
ASN
204
A
LYS
205
n
226
LYS
205
A
ALA
206
n
227
ALA
206
A
ASP
207
n
228
ASP
207
A
GLY
208
n
229
GLY
208
A
GLU
209
n
230
GLU
209
A
HIS
210
n
231
HIS
210
A
HIS
211
n
232
HIS
211
A
LYS
212
n
233
LYS
212
A
GLU
213
n
234
GLU
213
A
ALA
214
n
235
ALA
214
A
ARG
215
n
236
ARG
215
A
LEU
216
n
237
LEU
216
A
ALA
217
n
238
ALA
217
A
ALA
218
n
239
ALA
218
A
ARG
219
n
240
ARG
219
A
GLU
220
n
241
GLU
220
A
LEU
221
n
242
LEU
221
A
SER
222
n
243
SER
222
A
ALA
223
n
244
ALA
223
A
ALA
224
n
245
ALA
224
A
ILE
225
n
246
ILE
225
A
ARG
226
n
247
ARG
226
A
LEU
227
n
248
LEU
227
A
ILE
228
n
249
ILE
228
A
TYR
229
n
250
TYR
229
A
PRO
230
n
251
PRO
230
A
ARG
231
n
252
ARG
231
A
GLU
232
n
253
GLU
232
A
ALA
233
n
254
ALA
233
A
LEU
234
n
255
LEU
234
A
TRP
235
n
256
TRP
235
A
ARG
236
n
257
ARG
236
A
PRO
237
n
258
PRO
237
A
PRO
238
n
259
PRO
238
A
VAL
239
n
260
VAL
239
A
LEU
240
n
261
LEU
240
A
THR
241
n
262
THR
241
A
MET
242
n
263
MET
242
A
SER
243
n
264
SER
243
A
ALA
244
n
265
ALA
244
A
VAL
245
n
266
VAL
245
A
GLU
246
n
267
GLU
246
A
GLY
247
n
268
GLY
247
A
ARG
248
n
269
ARG
248
A
GLY
249
n
270
GLY
249
A
LEU
250
n
271
LEU
250
A
ALA
251
n
272
ALA
251
A
GLU
252
n
273
GLU
252
A
LEU
253
n
274
LEU
253
A
TRP
254
n
275
TRP
254
A
ASP
255
n
276
ASP
255
A
THR
256
n
277
THR
256
A
VAL
257
n
278
VAL
257
A
GLU
258
n
279
GLU
258
A
ARG
259
n
280
ARG
259
A
HIS
260
n
281
HIS
260
A
ARG
261
n
282
ARG
261
A
GLN
262
n
283
GLN
262
A
VAL
263
n
284
VAL
263
A
LEU
264
n
285
LEU
264
A
THR
265
n
286
THR
265
A
GLY
266
n
287
GLY
266
A
ALA
267
n
288
ALA
267
A
GLY
268
n
289
GLY
268
A
GLU
269
n
290
GLU
269
A
PHE
270
n
291
PHE
270
A
ASP
271
n
292
ASP
271
A
ALA
272
n
293
ALA
272
A
ARG
273
n
294
ARG
273
A
ARG
274
n
295
ARG
274
A
ARG
275
n
296
ARG
275
A
ASP
276
n
297
ASP
276
A
GLN
277
n
298
GLN
277
A
GLN
278
n
299
GLN
278
A
VAL
279
n
300
VAL
279
A
ASP
280
n
301
ASP
280
A
TRP
281
n
302
TRP
281
A
THR
282
n
303
THR
282
A
TRP
283
n
304
TRP
283
A
GLN
284
n
305
GLN
284
A
LEU
285
n
306
LEU
285
A
VAL
286
n
307
VAL
286
A
ARG
287
n
308
ARG
287
A
ASP
288
n
309
ASP
288
A
ALA
289
n
310
ALA
289
A
VAL
290
n
311
VAL
290
A
LEU
291
n
312
LEU
291
A
ASP
292
n
313
ASP
292
A
ARG
293
n
314
ARG
293
A
VAL
294
n
315
VAL
294
A
TRP
295
n
316
TRP
295
A
SER
296
n
317
SER
296
A
ASN
297
n
318
ASN
297
A
PRO
298
n
319
PRO
298
A
THR
299
n
320
THR
299
A
VAL
300
n
321
VAL
300
A
ARG
301
n
322
ARG
301
A
LYS
302
n
323
LYS
302
A
VAL
303
n
324
VAL
303
A
ARG
304
n
325
ARG
304
A
SER
305
n
326
SER
305
A
GLU
306
n
327
GLU
306
A
LEU
307
n
328
LEU
307
A
GLU
308
n
329
GLU
308
A
ARG
309
n
330
ARG
309
A
ARG
310
n
331
ARG
310
A
VAL
311
n
332
VAL
311
A
ARG
312
n
333
ARG
312
A
ALA
313
n
334
ALA
313
A
GLY
314
n
335
GLY
314
A
GLU
315
n
336
GLU
315
A
LEU
316
n
337
LEU
316
A
THR
317
n
338
THR
317
A
PRO
318
n
339
PRO
318
A
ALA
319
n
340
ALA
319
A
LEU
320
n
341
LEU
320
A
ALA
321
n
342
ALA
321
A
ALA
322
n
343
ALA
322
A
GLN
323
n
344
GLN
323
A
GLN
324
n
345
GLN
324
A
ILE
325
n
346
ILE
325
A
LEU
326
n
347
LEU
326
A
GLU
327
n
348
GLU
327
A
ILE
328
n
349
ILE
328
A
ALA
329
n
350
ALA
329
A
ASN
330
n
351
ASN
330
A
LEU
331
n
352
LEU
331
A
THR
332
n
353
THR
332
A
ASP
333
n
354
ASP
333
A
n
355
334
A
1.0055
0.0883
0.4248
1.2442
-0.3716
0.1662
0.2217
0.2123
-0.2637
0.0242
0.0110
-0.1816
0.1485
0.1596
-0.2327
0.2732
0.0820
-0.1117
0.1763
-0.0884
0.2891
refined
20.5463
23.8091
-1.7719
X-RAY DIFFRACTION
0.1564
-0.1499
0.3223
0.1936
-0.0242
1.0748
-0.0431
0.0993
0.0281
0.0470
-0.0097
0.0078
-0.0279
0.0728
0.0528
0.1757
-0.0152
-0.0088
0.2604
0.0141
0.2019
refined
9.7613
44.1240
-9.6764
X-RAY DIFFRACTION
0.1940
-0.0145
0.5151
2.6476
1.7625
1.6802
-0.0129
-0.1148
-0.0815
0.0925
0.0715
0.1189
0.1052
-0.0202
-0.0587
0.2596
-0.0379
0.0046
0.1551
0.0156
0.2324
refined
3.8486
24.5299
-1.4382
X-RAY DIFFRACTION
0.1109
-2.4944
1.2026
6.8560
0.6828
3.5112
0.4105
-0.0878
-0.1350
-0.7498
0.0161
0.1040
0.1477
0.2134
-0.4266
0.4361
0.0822
-0.0487
0.0171
-0.0467
0.1242
refined
1.2335
7.6293
-31.4455
X-RAY DIFFRACTION
A
10
A
165
X-RAY DIFFRACTION
1
A
166
A
257
X-RAY DIFFRACTION
2
A
258
A
292
X-RAY DIFFRACTION
3
A
293
A
333
X-RAY DIFFRACTION
4
author_and_software_defined_assembly
PISA
2
dimeric
7210
-39
26440
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_554
-x,y,-z-1/2
crystal symmetry operation
0.0000000000
0.0000000000
-33.2500000000
A
O
TYR
122
A
O
TYR
143
A
N
VAL
91
A
N
VAL
112
A
N
ALA
90
A
N
ALA
111
A
O
LEU
155
A
O
LEU
176
A
O
ILE
154
A
O
ILE
175
A
N
VAL
61
A
N
VAL
82
A
N
GLY
62
A
N
GLY
83
A
O
VAL
176
A
O
VAL
197
A
N
LEU
177
A
N
LEU
198
A
O
VAL
202
A
O
VAL
223
A
N
VAL
203
A
N
VAL
224
A
O
LEU
240
A
O
LEU
261
1
A
CG
ARG
23
A
CG
ARG
44
1
Y
1
A
CD
ARG
23
A
CD
ARG
44
1
Y
1
A
NE
ARG
23
A
NE
ARG
44
1
Y
1
A
CZ
ARG
23
A
CZ
ARG
44
1
Y
1
A
NH1
ARG
23
A
NH1
ARG
44
1
Y
1
A
NH2
ARG
23
A
NH2
ARG
44
1
Y
1
A
CG
ARG
28
A
CG
ARG
49
1
Y
1
A
CD
ARG
28
A
CD
ARG
49
1
Y
1
A
NE
ARG
28
A
NE
ARG
49
1
Y
1
A
CZ
ARG
28
A
CZ
ARG
49
1
Y
1
A
NH1
ARG
28
A
NH1
ARG
49
1
Y
1
A
NH2
ARG
28
A
NH2
ARG
49
1
Y
1
A
CG
ARG
37
A
CG
ARG
58
1
Y
1
A
CD
ARG
37
A
CD
ARG
58
1
Y
1
A
NE
ARG
37
A
NE
ARG
58
1
Y
1
A
CZ
ARG
37
A
CZ
ARG
58
1
Y
1
A
NH1
ARG
37
A
NH1
ARG
58
1
Y
1
A
NH2
ARG
37
A
NH2
ARG
58
1
Y
1
A
CG
ARG
41
A
CG
ARG
62
1
Y
1
A
CD
ARG
41
A
CD
ARG
62
1
Y
1
A
NE
ARG
41
A
NE
ARG
62
1
Y
1
A
CZ
ARG
41
A
CZ
ARG
62
1
Y
1
A
NH1
ARG
41
A
NH1
ARG
62
1
Y
1
A
NH2
ARG
41
A
NH2
ARG
62
1
Y
1
A
CG
ARG
50
A
CG
ARG
71
1
Y
1
A
CD
ARG
50
A
CD
ARG
71
1
Y
1
A
NE
ARG
50
A
NE
ARG
71
1
Y
1
A
CZ
ARG
50
A
CZ
ARG
71
1
Y
1
A
NH1
ARG
50
A
NH1
ARG
71
1
Y
1
A
NH2
ARG
50
A
NH2
ARG
71
1
Y
1
A
CG
ASP
95
A
CG
ASP
116
1
Y
1
A
OD1
ASP
95
A
OD1
ASP
116
1
Y
1
A
OD2
ASP
95
A
OD2
ASP
116
1
Y
1
A
CG
ARG
114
A
CG
ARG
135
1
Y
1
A
CD
ARG
114
A
CD
ARG
135
1
Y
1
A
NE
ARG
114
A
NE
ARG
135
1
Y
1
A
CZ
ARG
114
A
CZ
ARG
135
1
Y
1
A
NH1
ARG
114
A
NH1
ARG
135
1
Y
1
A
NH2
ARG
114
A
NH2
ARG
135
1
Y
1
A
CG
ARG
124
A
CG
ARG
145
1
Y
1
A
CD
ARG
124
A
CD
ARG
145
1
Y
1
A
NE
ARG
124
A
NE
ARG
145
1
Y
1
A
CZ
ARG
124
A
CZ
ARG
145
1
Y
1
A
NH1
ARG
124
A
NH1
ARG
145
1
Y
1
A
NH2
ARG
124
A
NH2
ARG
145
1
Y
1
A
CG1
VAL
159
A
CG1
VAL
180
1
Y
1
A
CG2
VAL
159
A
CG2
VAL
180
1
Y
1
A
CG
LYS
191
A
CG
LYS
212
1
Y
1
A
CD
LYS
191
A
CD
LYS
212
1
Y
1
A
CE
LYS
191
A
CE
LYS
212
1
Y
1
A
NZ
LYS
191
A
NZ
LYS
212
1
Y
1
A
CG
GLU
209
A
CG
GLU
230
1
Y
1
A
CD
GLU
209
A
CD
GLU
230
1
Y
1
A
OE1
GLU
209
A
OE1
GLU
230
1
Y
1
A
OE2
GLU
209
A
OE2
GLU
230
1
Y
1
A
CG
LYS
212
A
CG
LYS
233
1
Y
1
A
CD
LYS
212
A
CD
LYS
233
1
Y
1
A
CE
LYS
212
A
CE
LYS
233
1
Y
1
A
NZ
LYS
212
A
NZ
LYS
233
1
Y
1
A
CG
ARG
215
A
CG
ARG
236
1
Y
1
A
CD
ARG
215
A
CD
ARG
236
1
Y
1
A
NE
ARG
215
A
NE
ARG
236
1
Y
1
A
CZ
ARG
215
A
CZ
ARG
236
1
Y
1
A
NH1
ARG
215
A
NH1
ARG
236
1
Y
1
A
NH2
ARG
215
A
NH2
ARG
236
1
Y
1
A
CG
ARG
219
A
CG
ARG
240
1
Y
1
A
CD
ARG
219
A
CD
ARG
240
1
Y
1
A
NE
ARG
219
A
NE
ARG
240
1
Y
1
A
CZ
ARG
219
A
CZ
ARG
240
1
Y
1
A
NH1
ARG
219
A
NH1
ARG
240
1
Y
1
A
NH2
ARG
219
A
NH2
ARG
240
1
Y
1
A
CG
ARG
293
A
CG
ARG
314
1
Y
1
A
CD
ARG
293
A
CD
ARG
314
1
Y
1
A
NE
ARG
293
A
NE
ARG
314
1
Y
1
A
CZ
ARG
293
A
CZ
ARG
314
1
Y
1
A
NH1
ARG
293
A
NH1
ARG
314
1
Y
1
A
NH2
ARG
293
A
NH2
ARG
314
1
Y
1
A
CG
ARG
301
A
CG
ARG
322
1
Y
1
A
CD
ARG
301
A
CD
ARG
322
1
Y
1
A
NE
ARG
301
A
NE
ARG
322
1
Y
1
A
CZ
ARG
301
A
CZ
ARG
322
1
Y
1
A
NH1
ARG
301
A
NH1
ARG
322
1
Y
1
A
NH2
ARG
301
A
NH2
ARG
322
1
Y
1
A
CG
LYS
302
A
CG
LYS
323
1
Y
1
A
CD
LYS
302
A
CD
LYS
323
1
Y
1
A
CE
LYS
302
A
CE
LYS
323
1
Y
1
A
NZ
LYS
302
A
NZ
LYS
323
1
Y
1
A
CG
GLN
324
A
CG
GLN
345
1
Y
1
A
CD
GLN
324
A
CD
GLN
345
1
Y
1
A
OE1
GLN
324
A
OE1
GLN
345
1
Y
1
A
NE2
GLN
324
A
NE2
GLN
345
1
Y
1
A
MET
-20
A
MET
1
1
Y
1
A
ALA
-19
A
ALA
2
1
Y
1
A
HIS
-18
A
HIS
3
1
Y
1
A
HIS
-17
A
HIS
4
1
Y
1
A
HIS
-16
A
HIS
5
1
Y
1
A
HIS
-15
A
HIS
6
1
Y
1
A
HIS
-14
A
HIS
7
1
Y
1
A
HIS
-13
A
HIS
8
1
Y
1
A
MET
-12
A
MET
9
1
Y
1
A
GLY
-11
A
GLY
10
1
Y
1
A
THR
-10
A
THR
11
1
Y
1
A
LEU
-9
A
LEU
12
1
Y
1
A
GLU
-8
A
GLU
13
1
Y
1
A
ALA
-7
A
ALA
14
1
Y
1
A
GLN
-6
A
GLN
15
1
Y
1
A
THR
-5
A
THR
16
1
Y
1
A
GLN
-4
A
GLN
17
1
Y
1
A
GLY
-3
A
GLY
18
1
Y
1
A
PRO
-2
A
PRO
19
1
Y
1
A
GLY
-1
A
GLY
20
1
Y
1
A
SER
0
A
SER
21
1
Y
1
A
MET
1
A
MET
22
1
Y
1
A
MET
2
A
MET
23
1
Y
1
A
ALA
3
A
ALA
24
1
Y
1
A
ALA
4
A
ALA
25
1
Y
1
A
SER
5
A
SER
26
1
Y
1
A
HIS
6
A
HIS
27
1
Y
1
A
ASP
7
A
ASP
28
1
Y
1
A
ASP
8
A
ASP
29
1
Y
1
A
ASP
9
A
ASP
30
1
Y
1
A
PRO
96
A
PRO
117
1
Y
1
A
SER
97
A
SER
118
1
Y
1
A
SER
98
A
SER
119
1
Y
1
A
THR
99
A
THR
120
1
Y
1
A
ARG
100
A
ARG
121
1
Y
1
A
THR
101
A
THR
122
1
Y
1
A
GLY
102
A
GLY
123
1
Y
1
A
GLY
103
A
GLY
124
1
Y
1
A
SER
104
A
SER
125
1
Y
1
A
ILE
105
A
ILE
126
1
Y
1
A
LEU
106
A
LEU
127
1
Y
1
A
GLY
107
A
GLY
128
1
Y
1
A
ASP
108
A
ASP
129
1
Y
1
A
LYS
109
A
LYS
130
1
Y
1
A
THR
110
A
THR
131
1
Y
1
A
ARG
111
A
ARG
132
1
Y
1
A
THR
128
A
THR
149
1
Y
1
A
SER
129
A
SER
150
1
Y
1
A
ARG
334
A
ARG
355
1
Y
1
A
A
VAL
GLY
161
162
148.34
1
A
A
GLY
GLN
162
163
143.68
1
A
ASP
185
-141.47
18.10
1
A
LYS
205
76.95
35.78
85.080
40.8061
17.030
1.3800
0.0000
0.0000
-1.2300
0.0000
-0.1500
0.9540
0.9370
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
U VALUES : WITH TLS ADDED
0.2226
0.1986
0.1998
1.9000
45.427
1670
32897
5.1000
99.5100
0.2196
0.1973
1.000
0.300
0.8536
5.8360
0.0800
0.1303
0.1209
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.130
0.1210
0.8000
0.8000
1.4000
PDB ENTRY 3MDO
MAXIMUM LIKELIHOOD
MASK
1.9000
45.427
140
2443
48
0
2255
0.015
0.021
2348
1.406
1.986
3202
5.680
5.000
305
33.275
23.478
92
13.131
15.000
354
18.526
15.000
21
0.097
0.200
391
0.006
0.021
1728
0.923
1.500
1517
1.653
2.000
2418
2.423
3.000
831
4.045
4.500
783
0.4100
0.3240
1.9490
112
2285
2397
20
98.9700
36.610
1.900
50
3P32
33060
32985
-3.000
0.044
1
25.160
7.3
99.800
0.555
1.900
1.950
3.5
17610
2409
1
99.400
0.374
1.950
2.000
5.0
17473
2347
1
100.000
0.273
2.000
2.060
6.6
16969
2276
1
99.900
0.212
2.060
2.120
8.8
16202
2218
1
99.900
0.157
2.120
2.190
11.1
16094
2146
1
100.000
0.145
2.190
2.270
13.0
15061
2097
1
99.500
0.111
2.270
2.360
16.0
14807
1998
1
99.800
0.092
2.360
2.450
18.3
14693
1969
1
100.000
0.074
2.450
2.560
22.1
13806
1853
1
99.900
0.063
2.560
2.690
25.6
13195
1784
1
99.900
0.052
2.690
2.830
30.6
12565
1702
1
100.000
0.046
2.830
3.000
34.7
11804
1620
1
100.000
0.039
3.000
3.210
41.4
10989
1522
1
100.000
0.034
3.210
3.470
48.0
10188
1428
1
99.700
0.032
3.470
3.800
54.0
9232
1307
1
99.900
0.028
3.800
4.250
56.5
8284
1201
1
99.700
0.024
4.250
4.910
61.7
7610
1064
1
99.900
0.023
4.910
6.010
60.4
6566
911
1
99.900
0.022
6.010
8.500
61.8
5162
726
1
99.900
0.017
8.500
63.3
2637
407
1
94.700
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data reduction
XDS
phasing
PHASER
Hydrolysis of GTP to GDP by an MCM-associated and MeaB- and MMAA-like G-protein from Mycobacterium tuberculosis
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
A
THR
10
A
THR
31
HELX_P
A
GLY
20
A
GLY
41
1
1
11
A
ALA
24
A
ALA
45
HELX_P
A
SER
35
A
SER
56
1
2
12
A
ARG
37
A
ARG
58
HELX_P
A
LEU
52
A
LEU
73
1
3
16
A
PRO
53
A
PRO
74
HELX_P
A
SER
55
A
SER
76
5
4
3
A
GLY
70
A
GLY
91
HELX_P
A
GLU
84
A
GLU
105
1
5
15
A
MET
112
A
MET
133
HELX_P
A
VAL
117
A
VAL
138
1
6
6
A
THR
131
A
THR
152
HELX_P
A
ALA
149
A
ALA
170
1
7
19
A
GLN
163
A
GLN
184
HELX_P
A
ASN
170
A
ASN
191
1
8
8
A
VAL
194
A
VAL
215
HELX_P
A
ALA
198
A
ALA
219
5
9
5
A
ASP
207
A
ASP
228
HELX_P
A
GLU
209
A
GLU
230
5
10
3
A
HIS
210
A
HIS
231
HELX_P
A
TYR
229
A
TYR
250
1
11
20
A
SER
243
A
SER
264
HELX_P
A
GLY
247
A
GLY
268
5
12
5
A
GLY
249
A
GLY
270
HELX_P
A
ALA
267
A
ALA
288
1
13
19
A
GLY
268
A
GLY
289
HELX_P
A
SER
296
A
SER
317
1
14
29
A
ASN
297
A
ASN
318
HELX_P
A
ALA
313
A
ALA
334
1
15
17
A
THR
317
A
THR
338
HELX_P
A
ASP
333
A
ASP
354
1
16
17
HYDROLASE
Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, MeaB, MMAA, methylmalonic aciduria protein a, GTPase, G-protein, MCM, methylmalonyl-CoA mutase, incorrectly assigned as an arginine/ornithine transport system ATPase, methylmaolonyl pathway, HYDROLASE
Y1496_MYCTU
UNP
1
1
P63577
MMAASHDDDTVDGLATAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM
HLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVG
VGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVL
TMSAVEGRGLAELWDTVERHRQVLTGAGEFDARRRDQQVDWTWQLVRDAVLDRVWSNPTVRKVRSELERRVRAGELTPAL
AAQQILEIANLTDR
1
334
3P32
1
334
P63577
A
1
22
355
1
expression tag
MET
-20
3P32
A
P63577
UNP
1
1
expression tag
ALA
-19
3P32
A
P63577
UNP
2
1
expression tag
HIS
-18
3P32
A
P63577
UNP
3
1
expression tag
HIS
-17
3P32
A
P63577
UNP
4
1
expression tag
HIS
-16
3P32
A
P63577
UNP
5
1
expression tag
HIS
-15
3P32
A
P63577
UNP
6
1
expression tag
HIS
-14
3P32
A
P63577
UNP
7
1
expression tag
HIS
-13
3P32
A
P63577
UNP
8
1
expression tag
MET
-12
3P32
A
P63577
UNP
9
1
expression tag
GLY
-11
3P32
A
P63577
UNP
10
1
expression tag
THR
-10
3P32
A
P63577
UNP
11
1
expression tag
LEU
-9
3P32
A
P63577
UNP
12
1
expression tag
GLU
-8
3P32
A
P63577
UNP
13
1
expression tag
ALA
-7
3P32
A
P63577
UNP
14
1
expression tag
GLN
-6
3P32
A
P63577
UNP
15
1
expression tag
THR
-5
3P32
A
P63577
UNP
16
1
expression tag
GLN
-4
3P32
A
P63577
UNP
17
1
expression tag
GLY
-3
3P32
A
P63577
UNP
18
1
expression tag
PRO
-2
3P32
A
P63577
UNP
19
1
expression tag
GLY
-1
3P32
A
P63577
UNP
20
1
expression tag
SER
0
3P32
A
P63577
UNP
21
7
parallel
parallel
parallel
parallel
parallel
parallel
A
ALA
121
A
ALA
142
A
ARG
124
A
ARG
145
A
VAL
89
A
VAL
110
A
VAL
94
A
VAL
115
A
VAL
153
A
VAL
174
A
THR
158
A
THR
179
A
HIS
59
A
HIS
80
A
THR
64
A
THR
85
A
THR
174
A
THR
195
A
LEU
180
A
LEU
201
A
ILE
200
A
ILE
221
A
ASN
204
A
ASN
225
A
VAL
239
A
VAL
260
A
MET
242
A
MET
263
BINDING SITE FOR RESIDUE GDP A 335
A
GDP
335
Software
15
BINDING SITE FOR RESIDUE PGE A 336
A
PGE
336
Software
7
BINDING SITE FOR RESIDUE PGE A 337
A
PGE
337
Software
11
A
GLY
68
A
GLY
89
15
1_555
A
VAL
69
A
VAL
90
15
1_555
A
GLY
70
A
GLY
91
15
1_555
A
LYS
71
A
LYS
92
15
1_555
A
SER
72
A
SER
93
15
1_555
A
THR
73
A
THR
94
15
1_555
A
ASN
204
A
ASN
225
15
1_555
A
LYS
205
A
LYS
226
15
1_555
A
ASP
207
A
ASP
228
15
1_555
A
SER
243
A
SER
264
15
1_555
A
ALA
244
A
ALA
265
15
1_555
A
VAL
245
A
VAL
266
15
1_555
A
HOH
415
E
HOH
15
1_555
A
HOH
460
E
HOH
15
1_555
A
HOH
461
E
HOH
15
1_555
A
GLU
232
A
GLU
253
7
1_555
A
ALA
233
A
ALA
254
7
1_555
A
LEU
234
A
LEU
255
7
1_555
A
TRP
235
A
TRP
256
7
1_555
A
ARG
236
A
ARG
257
7
1_555
A
HOH
475
E
HOH
7
1_555
A
HOH
476
E
HOH
7
1_555
A
LYS
192
A
LYS
213
11
3_554
A
GLU
196
A
GLU
217
11
1_555
A
LEU
197
A
LEU
218
11
1_555
A
ALA
198
A
ALA
219
11
1_555
A
ASP
199
A
ASP
220
11
1_555
A
TYR
229
A
TYR
250
11
1_555
A
GLU
232
A
GLU
253
11
1_555
A
TRP
235
A
TRP
256
11
1_555
A
ARG
273
A
ARG
294
11
1_555
A
HOH
382
E
HOH
11
1_555
A
HOH
474
E
HOH
11
1_555
20
C 2 2 21