0.009409
0.005433
0.000000
0.000000
0.010865
0.000000
0.000000
0.000000
0.016292
0.000000
0.000000
0.000000
Osipiuk, J.
Zhou, M.
Papazisi, L.
Anderson, W.F.
Joachimiak, A.
Center for Structural Genomics of Infectious Diseases (CSGID)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
106.277
106.277
61.379
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H14 N5 O7 P
347.221
ADENOSINE MONOPHOSPHATE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H8 O7
192.124
CITRIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
O
N
19
N
C
N
20
R
C
N
21
N
O
N
22
S
C
N
23
N
O
N
24
R
C
N
25
N
O
N
26
R
C
Y
27
N
N
Y
28
N
C
Y
29
N
N
Y
30
N
C
Y
31
N
C
N
32
N
N
Y
33
N
N
Y
34
N
C
Y
35
N
N
Y
36
N
C
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
C
N
112
N
O
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
O
N
121
N
C
N
122
N
O
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
R
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
S
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
N
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
C
N
206
N
O
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
Y
224
N
C
Y
225
N
N
Y
226
N
C
Y
227
N
C
Y
228
N
N
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
S
C
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
N
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
S
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
O
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
R
C
N
391
N
O
N
392
N
C
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
N
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
N
441
N
O
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
N
C
N
459
N
C
N
460
N
C
N
461
N
O
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
Y
39
N
doub
N
40
N
sing
Y
41
N
sing
Y
42
N
sing
Y
43
N
doub
N
44
N
sing
Y
45
N
doub
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
doub
N
50
N
sing
Y
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
Y
221
N
sing
Y
222
N
doub
Y
223
N
doub
N
224
N
sing
Y
225
N
sing
N
226
N
sing
Y
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
Y
329
N
doub
Y
330
N
sing
Y
331
N
sing
N
332
N
sing
Y
333
N
doub
N
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
doub
Y
403
N
sing
Y
404
N
sing
N
405
N
sing
Y
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
To be Published
0353
Phosphoribosylformylglycinamidine cyclo-ligase from Vibrio cholerae.
10.2210/pdb3p4e/pdb
pdb_00003p4e
100
1
CCD
2010-08-22
ADSC QUANTUM 315
double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
19-ID
APS
0.9792
SYNCHROTRON
APS BEAMLINE 19-ID
37084.184
Phosphoribosylformylglycinamidine cyclo-ligase
6.3.3.1
1
man
polymer
347.221
ADENOSINE MONOPHOSPHATE
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
192.124
CITRIC ACID
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
282
nat
water
AIRS, Phosphoribosyl-aminoimidazole synthetase, AIR synthase
no
no
SNAMSGNNPSLSYKDAGVDIDAGNALVERIKGAVKRTRRPEVMGGLGGFGALCELPTKYKHPVLVSGTDGVGTKLRLALD
MKKHDTIGIDLVAMCVNDLIVQGAEPLFFLDYYATGKLDVDTAAEVISGIADGCLQAGCALIGGETAEMPGMYEGEDYDV
AGFCVGVVEKEEIIDGSKVQVGDALIAVGSSGPHSNGYSLVRKILEVSKADKNERLAGKTIGEHLLAPTKIYIKSGLKLI
AEHDIHAISHITGGGFWENIPRVLPEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHEMYRTFNCGVGLIIALPKDQANAAV
ALLQAEGETAWVIGEIAAANSNEAQVEIN
SNAMSGNNPSLSYKDAGVDIDAGNALVERIKGAVKRTRRPEVMGGLGGFGALCELPTKYKHPVLVSGTDGVGTKLRLALD
MKKHDTIGIDLVAMCVNDLIVQGAEPLFFLDYYATGKLDVDTAAEVISGIADGCLQAGCALIGGETAEMPGMYEGEDYDV
AGFCVGVVEKEEIIDGSKVQVGDALIAVGSSGPHSNGYSLVRKILEVSKADKNERLAGKTIGEHLLAPTKIYIKSGLKLI
AEHDIHAISHITGGGFWENIPRVLPEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHEMYRTFNCGVGLIIALPKDQANAAV
ALLQAEGETAWVIGEIAAANSNEAQVEIN
A
IDP90905
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
O1 biovar El Tor str. N16961
sample
purM, VC2226, VC_2226
666
Vibrio cholerae
469008
Escherichia coli
BL21(DE3)
plasmid
pMCSG7
1
2.70
54.42
VAPOR DIFFUSION, SITTING DROP
4.3
0.2 M ammonium-citrate dibasic, 20% PEG 3350, pH 4.3, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
Center for Structural Genomics of Infectious Diseases
CSGID
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-10-20
1
1
2011-07-13
1
2
2017-11-08
1
3
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2010-10-06
REL
REL
AMP
ADENOSINE MONOPHOSPHATE
GOL
GLYCEROL
CIT
CITRIC ACID
EDO
1,2-ETHANEDIOL
HOH
water
1CLI
PDB
experimental model
AMP
501
2
AMP
AMP
501
A
GOL
502
3
GOL
GOL
502
A
CIT
503
4
CIT
CIT
503
A
EDO
504
5
EDO
EDO
504
A
HOH
1
6
HOH
HOH
347
A
HOH
2
6
HOH
HOH
348
A
HOH
3
6
HOH
HOH
349
A
HOH
4
6
HOH
HOH
350
A
HOH
5
6
HOH
HOH
351
A
HOH
6
6
HOH
HOH
352
A
HOH
7
6
HOH
HOH
353
A
HOH
8
6
HOH
HOH
354
A
HOH
9
6
HOH
HOH
355
A
HOH
10
6
HOH
HOH
356
A
HOH
11
6
HOH
HOH
357
A
HOH
12
6
HOH
HOH
358
A
HOH
13
6
HOH
HOH
359
A
HOH
14
6
HOH
HOH
360
A
HOH
15
6
HOH
HOH
361
A
HOH
16
6
HOH
HOH
362
A
HOH
17
6
HOH
HOH
363
A
HOH
18
6
HOH
HOH
364
A
HOH
19
6
HOH
HOH
365
A
HOH
20
6
HOH
HOH
366
A
HOH
21
6
HOH
HOH
367
A
HOH
22
6
HOH
HOH
368
A
HOH
23
6
HOH
HOH
369
A
HOH
24
6
HOH
HOH
370
A
HOH
25
6
HOH
HOH
371
A
HOH
26
6
HOH
HOH
372
A
HOH
27
6
HOH
HOH
373
A
HOH
28
6
HOH
HOH
374
A
HOH
29
6
HOH
HOH
375
A
HOH
30
6
HOH
HOH
376
A
HOH
31
6
HOH
HOH
377
A
HOH
32
6
HOH
HOH
378
A
HOH
33
6
HOH
HOH
379
A
HOH
34
6
HOH
HOH
380
A
HOH
35
6
HOH
HOH
381
A
HOH
36
6
HOH
HOH
382
A
HOH
37
6
HOH
HOH
383
A
HOH
38
6
HOH
HOH
384
A
HOH
39
6
HOH
HOH
385
A
HOH
40
6
HOH
HOH
386
A
HOH
41
6
HOH
HOH
387
A
HOH
42
6
HOH
HOH
388
A
HOH
43
6
HOH
HOH
389
A
HOH
44
6
HOH
HOH
390
A
HOH
45
6
HOH
HOH
391
A
HOH
46
6
HOH
HOH
392
A
HOH
47
6
HOH
HOH
393
A
HOH
48
6
HOH
HOH
394
A
HOH
49
6
HOH
HOH
395
A
HOH
50
6
HOH
HOH
396
A
HOH
51
6
HOH
HOH
397
A
HOH
52
6
HOH
HOH
398
A
HOH
53
6
HOH
HOH
399
A
HOH
54
6
HOH
HOH
400
A
HOH
55
6
HOH
HOH
401
A
HOH
56
6
HOH
HOH
402
A
HOH
57
6
HOH
HOH
403
A
HOH
58
6
HOH
HOH
404
A
HOH
59
6
HOH
HOH
405
A
HOH
60
6
HOH
HOH
406
A
HOH
61
6
HOH
HOH
407
A
HOH
62
6
HOH
HOH
408
A
HOH
63
6
HOH
HOH
409
A
HOH
64
6
HOH
HOH
410
A
HOH
65
6
HOH
HOH
411
A
HOH
66
6
HOH
HOH
412
A
HOH
67
6
HOH
HOH
413
A
HOH
68
6
HOH
HOH
414
A
HOH
69
6
HOH
HOH
415
A
HOH
70
6
HOH
HOH
416
A
HOH
71
6
HOH
HOH
417
A
HOH
72
6
HOH
HOH
418
A
HOH
73
6
HOH
HOH
419
A
HOH
74
6
HOH
HOH
420
A
HOH
75
6
HOH
HOH
421
A
HOH
76
6
HOH
HOH
422
A
HOH
77
6
HOH
HOH
423
A
HOH
78
6
HOH
HOH
424
A
HOH
79
6
HOH
HOH
425
A
HOH
80
6
HOH
HOH
426
A
HOH
81
6
HOH
HOH
427
A
HOH
82
6
HOH
HOH
428
A
HOH
83
6
HOH
HOH
429
A
HOH
84
6
HOH
HOH
430
A
HOH
85
6
HOH
HOH
431
A
HOH
86
6
HOH
HOH
432
A
HOH
87
6
HOH
HOH
433
A
HOH
88
6
HOH
HOH
434
A
HOH
89
6
HOH
HOH
435
A
HOH
90
6
HOH
HOH
436
A
HOH
91
6
HOH
HOH
437
A
HOH
92
6
HOH
HOH
438
A
HOH
93
6
HOH
HOH
439
A
HOH
94
6
HOH
HOH
440
A
HOH
95
6
HOH
HOH
441
A
HOH
96
6
HOH
HOH
442
A
HOH
97
6
HOH
HOH
443
A
HOH
98
6
HOH
HOH
444
A
HOH
99
6
HOH
HOH
445
A
HOH
100
6
HOH
HOH
446
A
HOH
101
6
HOH
HOH
447
A
HOH
102
6
HOH
HOH
448
A
HOH
103
6
HOH
HOH
449
A
HOH
104
6
HOH
HOH
450
A
HOH
105
6
HOH
HOH
451
A
HOH
106
6
HOH
HOH
452
A
HOH
107
6
HOH
HOH
453
A
HOH
108
6
HOH
HOH
454
A
HOH
109
6
HOH
HOH
455
A
HOH
110
6
HOH
HOH
456
A
HOH
111
6
HOH
HOH
457
A
HOH
112
6
HOH
HOH
458
A
HOH
113
6
HOH
HOH
459
A
HOH
114
6
HOH
HOH
460
A
HOH
115
6
HOH
HOH
461
A
HOH
116
6
HOH
HOH
462
A
HOH
117
6
HOH
HOH
463
A
HOH
118
6
HOH
HOH
464
A
HOH
119
6
HOH
HOH
465
A
HOH
120
6
HOH
HOH
466
A
HOH
121
6
HOH
HOH
467
A
HOH
122
6
HOH
HOH
468
A
HOH
123
6
HOH
HOH
469
A
HOH
124
6
HOH
HOH
470
A
HOH
125
6
HOH
HOH
471
A
HOH
126
6
HOH
HOH
472
A
HOH
127
6
HOH
HOH
473
A
HOH
128
6
HOH
HOH
474
A
HOH
129
6
HOH
HOH
475
A
HOH
130
6
HOH
HOH
476
A
HOH
131
6
HOH
HOH
477
A
HOH
132
6
HOH
HOH
478
A
HOH
133
6
HOH
HOH
479
A
HOH
134
6
HOH
HOH
480
A
HOH
135
6
HOH
HOH
481
A
HOH
136
6
HOH
HOH
482
A
HOH
137
6
HOH
HOH
483
A
HOH
138
6
HOH
HOH
484
A
HOH
139
6
HOH
HOH
485
A
HOH
140
6
HOH
HOH
486
A
HOH
141
6
HOH
HOH
487
A
HOH
142
6
HOH
HOH
488
A
HOH
143
6
HOH
HOH
489
A
HOH
144
6
HOH
HOH
490
A
HOH
145
6
HOH
HOH
491
A
HOH
146
6
HOH
HOH
492
A
HOH
147
6
HOH
HOH
493
A
HOH
148
6
HOH
HOH
494
A
HOH
149
6
HOH
HOH
495
A
HOH
150
6
HOH
HOH
496
A
HOH
151
6
HOH
HOH
497
A
HOH
152
6
HOH
HOH
498
A
HOH
153
6
HOH
HOH
499
A
HOH
154
6
HOH
HOH
500
A
HOH
155
6
HOH
HOH
505
A
HOH
156
6
HOH
HOH
506
A
HOH
157
6
HOH
HOH
507
A
HOH
158
6
HOH
HOH
508
A
HOH
159
6
HOH
HOH
509
A
HOH
160
6
HOH
HOH
510
A
HOH
161
6
HOH
HOH
511
A
HOH
162
6
HOH
HOH
512
A
HOH
163
6
HOH
HOH
513
A
HOH
164
6
HOH
HOH
514
A
HOH
165
6
HOH
HOH
515
A
HOH
166
6
HOH
HOH
516
A
HOH
167
6
HOH
HOH
517
A
HOH
168
6
HOH
HOH
518
A
HOH
169
6
HOH
HOH
519
A
HOH
170
6
HOH
HOH
520
A
HOH
171
6
HOH
HOH
521
A
HOH
172
6
HOH
HOH
522
A
HOH
173
6
HOH
HOH
523
A
HOH
174
6
HOH
HOH
524
A
HOH
175
6
HOH
HOH
525
A
HOH
176
6
HOH
HOH
526
A
HOH
177
6
HOH
HOH
527
A
HOH
178
6
HOH
HOH
528
A
HOH
179
6
HOH
HOH
529
A
HOH
180
6
HOH
HOH
530
A
HOH
181
6
HOH
HOH
531
A
HOH
182
6
HOH
HOH
532
A
HOH
183
6
HOH
HOH
533
A
HOH
184
6
HOH
HOH
534
A
HOH
185
6
HOH
HOH
535
A
HOH
186
6
HOH
HOH
536
A
HOH
187
6
HOH
HOH
537
A
HOH
188
6
HOH
HOH
538
A
HOH
189
6
HOH
HOH
539
A
HOH
190
6
HOH
HOH
540
A
HOH
191
6
HOH
HOH
541
A
HOH
192
6
HOH
HOH
542
A
HOH
193
6
HOH
HOH
543
A
HOH
194
6
HOH
HOH
544
A
HOH
195
6
HOH
HOH
545
A
HOH
196
6
HOH
HOH
546
A
HOH
197
6
HOH
HOH
547
A
HOH
198
6
HOH
HOH
548
A
HOH
199
6
HOH
HOH
549
A
HOH
200
6
HOH
HOH
550
A
HOH
201
6
HOH
HOH
551
A
HOH
202
6
HOH
HOH
552
A
HOH
203
6
HOH
HOH
553
A
HOH
204
6
HOH
HOH
554
A
HOH
205
6
HOH
HOH
555
A
HOH
206
6
HOH
HOH
556
A
HOH
207
6
HOH
HOH
557
A
HOH
208
6
HOH
HOH
558
A
HOH
209
6
HOH
HOH
559
A
HOH
210
6
HOH
HOH
560
A
HOH
211
6
HOH
HOH
561
A
HOH
212
6
HOH
HOH
562
A
HOH
213
6
HOH
HOH
563
A
HOH
214
6
HOH
HOH
564
A
HOH
215
6
HOH
HOH
565
A
HOH
216
6
HOH
HOH
566
A
HOH
217
6
HOH
HOH
567
A
HOH
218
6
HOH
HOH
568
A
HOH
219
6
HOH
HOH
569
A
HOH
220
6
HOH
HOH
570
A
HOH
221
6
HOH
HOH
571
A
HOH
222
6
HOH
HOH
572
A
HOH
223
6
HOH
HOH
573
A
HOH
224
6
HOH
HOH
574
A
HOH
225
6
HOH
HOH
575
A
HOH
226
6
HOH
HOH
576
A
HOH
227
6
HOH
HOH
577
A
HOH
228
6
HOH
HOH
578
A
HOH
229
6
HOH
HOH
579
A
HOH
230
6
HOH
HOH
580
A
HOH
231
6
HOH
HOH
581
A
HOH
232
6
HOH
HOH
582
A
HOH
233
6
HOH
HOH
583
A
HOH
234
6
HOH
HOH
584
A
HOH
235
6
HOH
HOH
585
A
HOH
236
6
HOH
HOH
586
A
HOH
237
6
HOH
HOH
587
A
HOH
238
6
HOH
HOH
588
A
HOH
239
6
HOH
HOH
589
A
HOH
240
6
HOH
HOH
590
A
HOH
241
6
HOH
HOH
591
A
HOH
242
6
HOH
HOH
592
A
HOH
243
6
HOH
HOH
593
A
HOH
244
6
HOH
HOH
594
A
HOH
245
6
HOH
HOH
595
A
HOH
246
6
HOH
HOH
596
A
HOH
247
6
HOH
HOH
597
A
HOH
248
6
HOH
HOH
598
A
HOH
249
6
HOH
HOH
599
A
HOH
250
6
HOH
HOH
600
A
HOH
251
6
HOH
HOH
601
A
HOH
252
6
HOH
HOH
602
A
HOH
253
6
HOH
HOH
603
A
HOH
254
6
HOH
HOH
604
A
HOH
255
6
HOH
HOH
605
A
HOH
256
6
HOH
HOH
606
A
HOH
257
6
HOH
HOH
607
A
HOH
258
6
HOH
HOH
608
A
HOH
259
6
HOH
HOH
609
A
HOH
260
6
HOH
HOH
610
A
HOH
261
6
HOH
HOH
611
A
HOH
262
6
HOH
HOH
612
A
HOH
263
6
HOH
HOH
613
A
HOH
264
6
HOH
HOH
614
A
HOH
265
6
HOH
HOH
615
A
HOH
266
6
HOH
HOH
616
A
HOH
267
6
HOH
HOH
617
A
HOH
268
6
HOH
HOH
618
A
HOH
269
6
HOH
HOH
619
A
HOH
270
6
HOH
HOH
620
A
HOH
271
6
HOH
HOH
621
A
HOH
272
6
HOH
HOH
622
A
HOH
273
6
HOH
HOH
623
A
HOH
274
6
HOH
HOH
624
A
HOH
275
6
HOH
HOH
625
A
HOH
276
6
HOH
HOH
626
A
HOH
277
6
HOH
HOH
627
A
HOH
278
6
HOH
HOH
628
A
HOH
279
6
HOH
HOH
629
A
HOH
280
6
HOH
HOH
630
A
HOH
281
6
HOH
HOH
631
A
HOH
282
6
HOH
HOH
632
A
n
1
-2
A
n
2
-1
A
n
3
0
A
n
4
1
A
n
5
2
A
n
6
3
A
n
7
4
A
n
8
5
A
n
9
6
A
n
10
7
A
n
11
8
A
n
12
9
A
n
13
10
A
n
14
11
A
n
15
12
A
n
16
13
A
n
17
14
A
n
18
15
A
n
19
16
A
n
20
17
A
ASP
18
n
21
ASP
18
A
ALA
19
n
22
ALA
19
A
GLY
20
n
23
GLY
20
A
ASN
21
n
24
ASN
21
A
ALA
22
n
25
ALA
22
A
LEU
23
n
26
LEU
23
A
VAL
24
n
27
VAL
24
A
GLU
25
n
28
GLU
25
A
ARG
26
n
29
ARG
26
A
ILE
27
n
30
ILE
27
A
LYS
28
n
31
LYS
28
A
GLY
29
n
32
GLY
29
A
ALA
30
n
33
ALA
30
A
VAL
31
n
34
VAL
31
A
LYS
32
n
35
LYS
32
A
ARG
33
n
36
ARG
33
A
THR
34
n
37
THR
34
A
ARG
35
n
38
ARG
35
A
ARG
36
n
39
ARG
36
A
PRO
37
n
40
PRO
37
A
GLU
38
n
41
GLU
38
A
VAL
39
n
42
VAL
39
A
MET
40
n
43
MET
40
A
GLY
41
n
44
GLY
41
A
n
45
42
A
n
46
43
A
n
47
44
A
n
48
45
A
n
49
46
A
n
50
47
A
ALA
48
n
51
ALA
48
A
LEU
49
n
52
LEU
49
A
CYS
50
n
53
CYS
50
A
GLU
51
n
54
GLU
51
A
LEU
52
n
55
LEU
52
A
PRO
53
n
56
PRO
53
A
THR
54
n
57
THR
54
A
LYS
55
n
58
LYS
55
A
TYR
56
n
59
TYR
56
A
LYS
57
n
60
LYS
57
A
HIS
58
n
61
HIS
58
A
PRO
59
n
62
PRO
59
A
VAL
60
n
63
VAL
60
A
LEU
61
n
64
LEU
61
A
VAL
62
n
65
VAL
62
A
SER
63
n
66
SER
63
A
GLY
64
n
67
GLY
64
A
THR
65
n
68
THR
65
A
ASP
66
n
69
ASP
66
A
GLY
67
n
70
GLY
67
A
VAL
68
n
71
VAL
68
A
GLY
69
n
72
GLY
69
A
THR
70
n
73
THR
70
A
LYS
71
n
74
LYS
71
A
LEU
72
n
75
LEU
72
A
ARG
73
n
76
ARG
73
A
LEU
74
n
77
LEU
74
A
ALA
75
n
78
ALA
75
A
LEU
76
n
79
LEU
76
A
ASP
77
n
80
ASP
77
A
MET
78
n
81
MET
78
A
LYS
79
n
82
LYS
79
A
LYS
80
n
83
LYS
80
A
HIS
81
n
84
HIS
81
A
ASP
82
n
85
ASP
82
A
THR
83
n
86
THR
83
A
ILE
84
n
87
ILE
84
A
GLY
85
n
88
GLY
85
A
ILE
86
n
89
ILE
86
A
ASP
87
n
90
ASP
87
A
LEU
88
n
91
LEU
88
A
VAL
89
n
92
VAL
89
A
ALA
90
n
93
ALA
90
A
MET
91
n
94
MET
91
A
CYS
92
n
95
CYS
92
A
VAL
93
n
96
VAL
93
A
ASN
94
n
97
ASN
94
A
ASP
95
n
98
ASP
95
A
LEU
96
n
99
LEU
96
A
ILE
97
n
100
ILE
97
A
VAL
98
n
101
VAL
98
A
GLN
99
n
102
GLN
99
A
GLY
100
n
103
GLY
100
A
ALA
101
n
104
ALA
101
A
GLU
102
n
105
GLU
102
A
PRO
103
n
106
PRO
103
A
LEU
104
n
107
LEU
104
A
PHE
105
n
108
PHE
105
A
PHE
106
n
109
PHE
106
A
LEU
107
n
110
LEU
107
A
ASP
108
n
111
ASP
108
A
TYR
109
n
112
TYR
109
A
TYR
110
n
113
TYR
110
A
ALA
111
n
114
ALA
111
A
THR
112
n
115
THR
112
A
GLY
113
n
116
GLY
113
A
LYS
114
n
117
LYS
114
A
LEU
115
n
118
LEU
115
A
ASP
116
n
119
ASP
116
A
VAL
117
n
120
VAL
117
A
ASP
118
n
121
ASP
118
A
THR
119
n
122
THR
119
A
ALA
120
n
123
ALA
120
A
ALA
121
n
124
ALA
121
A
GLU
122
n
125
GLU
122
A
VAL
123
n
126
VAL
123
A
ILE
124
n
127
ILE
124
A
SER
125
n
128
SER
125
A
GLY
126
n
129
GLY
126
A
ILE
127
n
130
ILE
127
A
ALA
128
n
131
ALA
128
A
ASP
129
n
132
ASP
129
A
GLY
130
n
133
GLY
130
A
CYS
131
n
134
CYS
131
A
LEU
132
n
135
LEU
132
A
GLN
133
n
136
GLN
133
A
ALA
134
n
137
ALA
134
A
GLY
135
n
138
GLY
135
A
CYS
136
n
139
CYS
136
A
ALA
137
n
140
ALA
137
A
LEU
138
n
141
LEU
138
A
ILE
139
n
142
ILE
139
A
GLY
140
n
143
GLY
140
A
GLY
141
n
144
GLY
141
A
GLU
142
n
145
GLU
142
A
THR
143
n
146
THR
143
A
ALA
144
n
147
ALA
144
A
GLU
145
n
148
GLU
145
A
MET
146
n
149
MET
146
A
PRO
147
n
150
PRO
147
A
GLY
148
n
151
GLY
148
A
MET
149
n
152
MET
149
A
TYR
150
n
153
TYR
150
A
GLU
151
n
154
GLU
151
A
GLY
152
n
155
GLY
152
A
GLU
153
n
156
GLU
153
A
ASP
154
n
157
ASP
154
A
TYR
155
n
158
TYR
155
A
ASP
156
n
159
ASP
156
A
VAL
157
n
160
VAL
157
A
ALA
158
n
161
ALA
158
A
GLY
159
n
162
GLY
159
A
PHE
160
n
163
PHE
160
A
CYS
161
n
164
CYS
161
A
VAL
162
n
165
VAL
162
A
GLY
163
n
166
GLY
163
A
VAL
164
n
167
VAL
164
A
VAL
165
n
168
VAL
165
A
GLU
166
n
169
GLU
166
A
LYS
167
n
170
LYS
167
A
GLU
168
n
171
GLU
168
A
GLU
169
n
172
GLU
169
A
ILE
170
n
173
ILE
170
A
ILE
171
n
174
ILE
171
A
ASP
172
n
175
ASP
172
A
GLY
173
n
176
GLY
173
A
SER
174
n
177
SER
174
A
LYS
175
n
178
LYS
175
A
VAL
176
n
179
VAL
176
A
GLN
177
n
180
GLN
177
A
VAL
178
n
181
VAL
178
A
GLY
179
n
182
GLY
179
A
ASP
180
n
183
ASP
180
A
ALA
181
n
184
ALA
181
A
LEU
182
n
185
LEU
182
A
ILE
183
n
186
ILE
183
A
ALA
184
n
187
ALA
184
A
VAL
185
n
188
VAL
185
A
GLY
186
n
189
GLY
186
A
SER
187
n
190
SER
187
A
SER
188
n
191
SER
188
A
GLY
189
n
192
GLY
189
A
PRO
190
n
193
PRO
190
A
HIS
191
n
194
HIS
191
A
SER
192
n
195
SER
192
A
ASN
193
n
196
ASN
193
A
GLY
194
n
197
GLY
194
A
TYR
195
n
198
TYR
195
A
SER
196
n
199
SER
196
A
LEU
197
n
200
LEU
197
A
VAL
198
n
201
VAL
198
A
ARG
199
n
202
ARG
199
A
LYS
200
n
203
LYS
200
A
ILE
201
n
204
ILE
201
A
LEU
202
n
205
LEU
202
A
GLU
203
n
206
GLU
203
A
VAL
204
n
207
VAL
204
A
SER
205
n
208
SER
205
A
LYS
206
n
209
LYS
206
A
ALA
207
n
210
ALA
207
A
ASP
208
n
211
ASP
208
A
LYS
209
n
212
LYS
209
A
ASN
210
n
213
ASN
210
A
GLU
211
n
214
GLU
211
A
ARG
212
n
215
ARG
212
A
LEU
213
n
216
LEU
213
A
ALA
214
n
217
ALA
214
A
GLY
215
n
218
GLY
215
A
LYS
216
n
219
LYS
216
A
THR
217
n
220
THR
217
A
ILE
218
n
221
ILE
218
A
GLY
219
n
222
GLY
219
A
GLU
220
n
223
GLU
220
A
HIS
221
n
224
HIS
221
A
LEU
222
n
225
LEU
222
A
LEU
223
n
226
LEU
223
A
ALA
224
n
227
ALA
224
A
PRO
225
n
228
PRO
225
A
THR
226
n
229
THR
226
A
LYS
227
n
230
LYS
227
A
ILE
228
n
231
ILE
228
A
TYR
229
n
232
TYR
229
A
ILE
230
n
233
ILE
230
A
LYS
231
n
234
LYS
231
A
SER
232
n
235
SER
232
A
GLY
233
n
236
GLY
233
A
LEU
234
n
237
LEU
234
A
LYS
235
n
238
LYS
235
A
LEU
236
n
239
LEU
236
A
ILE
237
n
240
ILE
237
A
ALA
238
n
241
ALA
238
A
GLU
239
n
242
GLU
239
A
HIS
240
n
243
HIS
240
A
ASP
241
n
244
ASP
241
A
ILE
242
n
245
ILE
242
A
HIS
243
n
246
HIS
243
A
ALA
244
n
247
ALA
244
A
ILE
245
n
248
ILE
245
A
SER
246
n
249
SER
246
A
HIS
247
n
250
HIS
247
A
ILE
248
n
251
ILE
248
A
THR
249
n
252
THR
249
A
GLY
250
n
253
GLY
250
A
GLY
251
n
254
GLY
251
A
GLY
252
n
255
GLY
252
A
PHE
253
n
256
PHE
253
A
TRP
254
n
257
TRP
254
A
GLU
255
n
258
GLU
255
A
ASN
256
n
259
ASN
256
A
ILE
257
n
260
ILE
257
A
PRO
258
n
261
PRO
258
A
ARG
259
n
262
ARG
259
A
VAL
260
n
263
VAL
260
A
LEU
261
n
264
LEU
261
A
PRO
262
n
265
PRO
262
A
GLU
263
n
266
GLU
263
A
GLY
264
n
267
GLY
264
A
THR
265
n
268
THR
265
A
LYS
266
n
269
LYS
266
A
ALA
267
n
270
ALA
267
A
VAL
268
n
271
VAL
268
A
ILE
269
n
272
ILE
269
A
ASP
270
n
273
ASP
270
A
GLY
271
n
274
GLY
271
A
LYS
272
n
275
LYS
272
A
SER
273
n
276
SER
273
A
TRP
274
n
277
TRP
274
A
GLU
275
n
278
GLU
275
A
TRP
276
n
279
TRP
276
A
PRO
277
n
280
PRO
277
A
VAL
278
n
281
VAL
278
A
ILE
279
n
282
ILE
279
A
PHE
280
n
283
PHE
280
A
GLN
281
n
284
GLN
281
A
TRP
282
n
285
TRP
282
A
LEU
283
n
286
LEU
283
A
GLN
284
n
287
GLN
284
A
GLU
285
n
288
GLU
285
A
LYS
286
n
289
LYS
286
A
GLY
287
n
290
GLY
287
A
ASN
288
n
291
ASN
288
A
VAL
289
n
292
VAL
289
A
THR
290
n
293
THR
290
A
THR
291
n
294
THR
291
A
HIS
292
n
295
HIS
292
A
GLU
293
n
296
GLU
293
A
MET
294
n
297
MET
294
A
TYR
295
n
298
TYR
295
A
ARG
296
n
299
ARG
296
A
THR
297
n
300
THR
297
A
PHE
298
n
301
PHE
298
A
ASN
299
n
302
ASN
299
A
CYS
300
n
303
CYS
300
A
GLY
301
n
304
GLY
301
A
VAL
302
n
305
VAL
302
A
GLY
303
n
306
GLY
303
A
LEU
304
n
307
LEU
304
A
ILE
305
n
308
ILE
305
A
ILE
306
n
309
ILE
306
A
ALA
307
n
310
ALA
307
A
LEU
308
n
311
LEU
308
A
PRO
309
n
312
PRO
309
A
LYS
310
n
313
LYS
310
A
ASP
311
n
314
ASP
311
A
GLN
312
n
315
GLN
312
A
ALA
313
n
316
ALA
313
A
ASN
314
n
317
ASN
314
A
ALA
315
n
318
ALA
315
A
ALA
316
n
319
ALA
316
A
VAL
317
n
320
VAL
317
A
ALA
318
n
321
ALA
318
A
LEU
319
n
322
LEU
319
A
LEU
320
n
323
LEU
320
A
GLN
321
n
324
GLN
321
A
ALA
322
n
325
ALA
322
A
GLU
323
n
326
GLU
323
A
GLY
324
n
327
GLY
324
A
GLU
325
n
328
GLU
325
A
THR
326
n
329
THR
326
A
ALA
327
n
330
ALA
327
A
TRP
328
n
331
TRP
328
A
VAL
329
n
332
VAL
329
A
ILE
330
n
333
ILE
330
A
GLY
331
n
334
GLY
331
A
GLU
332
n
335
GLU
332
A
ILE
333
n
336
ILE
333
A
ALA
334
n
337
ALA
334
A
ALA
335
n
338
ALA
335
A
ALA
336
n
339
ALA
336
A
ASN
337
n
340
ASN
337
A
SER
338
n
341
SER
338
A
ASN
339
n
342
ASN
339
A
GLU
340
n
343
GLU
340
A
ALA
341
n
344
ALA
341
A
GLN
342
n
345
GLN
342
A
VAL
343
n
346
VAL
343
A
GLU
344
n
347
GLU
344
A
ILE
345
n
348
ILE
345
A
ASN
346
n
349
ASN
346
A
0.8932
0.0333
0.2425
0.5692
-0.1361
0.6070
0.0269
0.0295
0.0025
-0.0174
-0.0167
0.0753
0.0312
-0.0252
-0.0102
0.0380
0.0038
0.0079
0.0107
-0.0021
0.0129
refined
35.4502
29.7983
6.5817
X-RAY DIFFRACTION
A
-10
A
9999
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
2
dimeric
5790
-21
26060
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
MET
40
A
N
MET
43
A
O
LEU
49
A
O
LEU
52
A
N
VAL
62
A
N
VAL
65
A
O
GLY
163
A
O
GLY
166
A
O
ASP
156
A
O
ASP
159
A
N
ALA
111
A
N
ALA
114
A
N
TYR
110
A
N
TYR
113
A
O
ALA
144
A
O
ALA
147
A
N
SER
246
A
N
SER
249
A
O
ILE
305
A
O
ILE
308
A
O
ILE
306
A
O
ILE
309
A
N
ILE
183
A
N
ILE
186
A
N
ALA
184
A
N
ALA
187
A
O
TRP
328
A
O
TRP
331
A
O
ILE
330
A
O
ILE
333
A
N
ASP
270
A
N
ASP
273
A
N
ILE
269
A
N
ILE
272
A
O
GLU
344
A
O
GLU
347
A
N
LEU
213
A
N
LEU
216
A
O
LYS
216
A
O
LYS
219
1
A
SER
-2
A
SER
1
1
Y
1
A
ASN
-1
A
ASN
2
1
Y
1
A
ALA
0
A
ALA
3
1
Y
1
A
MET
1
A
MET
4
1
Y
1
A
SER
2
A
SER
5
1
Y
1
A
GLY
3
A
GLY
6
1
Y
1
A
ASN
4
A
ASN
7
1
Y
1
A
ASN
5
A
ASN
8
1
Y
1
A
PRO
6
A
PRO
9
1
Y
1
A
SER
7
A
SER
10
1
Y
1
A
LEU
8
A
LEU
11
1
Y
1
A
SER
9
A
SER
12
1
Y
1
A
TYR
10
A
TYR
13
1
Y
1
A
LYS
11
A
LYS
14
1
Y
1
A
ASP
12
A
ASP
15
1
Y
1
A
ALA
13
A
ALA
16
1
Y
1
A
GLY
14
A
GLY
17
1
Y
1
A
VAL
15
A
VAL
18
1
Y
1
A
ASP
16
A
ASP
19
1
Y
1
A
ILE
17
A
ILE
20
1
Y
1
A
GLY
42
A
GLY
45
1
Y
1
A
LEU
43
A
LEU
46
1
Y
1
A
GLY
44
A
GLY
47
1
Y
1
A
GLY
45
A
GLY
48
1
Y
1
A
PHE
46
A
PHE
49
1
Y
1
A
GLY
47
A
GLY
50
1
Y
1
A
A
O
O
HOH
HOH
369
545
1.99
1
A
A
O
O
HOH
HOH
568
627
2.01
1
A
HIS
191
61.36
-116.26
1
A
THR
249
-125.72
-124.53
62.130
29.635
5.230
0.5900
0.2900
0.0000
0.5900
0.0000
-0.8800
0.9750
0.9680
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY
0.1750
0.1489
0.1502
0.1502
1.7700
40.1700
1966
39087
39087
5.0000
99.6700
1.000
0.300
3.7660
0.0540
RANDOM
1
THROUGHOUT
0.000
0
MOLECULAR REPLACEMENT
0.091
0.0880
0.8000
0.8000
1.4000
1CLI
MAXIMUM LIKELIHOOD
MASK
1.7700
40.1700
282
2754
46
0
2426
0.018
0.022
2695
0.001
0.020
1794
1.703
1.988
3691
0.990
3.000
4457
6.175
5.000
374
39.030
25.664
113
14.735
15.000
477
19.937
15.000
10
0.106
0.200
420
0.008
0.020
3051
0.001
0.020
497
0.956
1.500
1676
0.286
1.500
700
1.746
2.000
2714
2.720
3.000
1019
4.406
4.500
951
0.3100
0.2810
1.8160
150
2678
2828
2828
20
98.7800
37.7
1.770
40.2
3P4E
39208
39208
0
0
0.051
0.910
1
10.700
6.900
100.000
0.682
1.770
1.800
2.05
1946
0.681
5.800
100.000
0.570
1.800
1.830
1933
0.696
6.800
100.000
0.447
1.830
1.870
1912
0.699
7.000
100.000
0.379
1.870
1.910
1962
0.720
7.000
100.000
0.301
1.910
1.950
1920
0.762
7.000
100.000
0.239
1.950
1.990
1947
0.807
7.000
100.000
0.182
1.990
2.040
1967
0.889
7.000
100.000
0.153
2.040
2.100
1916
0.898
7.000
100.000
0.130
2.100
2.160
1945
0.960
7.000
100.000
0.116
2.160
2.230
1963
0.984
7.000
100.000
0.099
2.230
2.310
1959
1.065
7.000
100.000
0.089
2.310
2.400
1935
1.051
7.000
100.000
0.078
2.400
2.510
1960
1.061
7.000
100.000
0.068
2.510
2.640
1956
1.061
7.000
100.000
0.059
2.640
2.810
1963
0.972
7.000
100.000
0.052
2.810
3.030
1970
1.010
7.000
100.000
0.053
3.030
3.330
1978
1.127
6.900
100.000
0.053
3.330
3.810
1989
1.143
6.900
100.000
0.033
3.810
4.800
2001
0.967
6.700
100.000
0.017
4.800
50.000
2086
0.581
6.700
99.900
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0109
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
SBC-Collect
data reduction
HKL-3000
data scaling
HKL-3000
phasing
MOLREP
phasing
HKL-3000
Phosphoribosylformylglycinamidine cyclo-ligase from Vibrio cholerae
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
ASP
18
A
ASP
21
HELX_P
A
THR
34
A
THR
37
1
1
17
A
GLY
69
A
GLY
72
HELX_P
A
MET
78
A
MET
81
1
2
10
A
THR
83
A
THR
86
HELX_P
A
VAL
98
A
VAL
101
1
3
16
A
ASP
116
A
ASP
119
HELX_P
A
GLY
135
A
GLY
138
1
4
20
A
GLU
168
A
GLU
171
HELX_P
A
ILE
170
A
ILE
173
5
5
3
A
GLY
194
A
GLY
197
HELX_P
A
LYS
206
A
LYS
209
1
6
13
A
ILE
218
A
ILE
221
HELX_P
A
ALA
224
A
ALA
227
1
7
7
A
TYR
229
A
TYR
232
HELX_P
A
HIS
240
A
HIS
243
1
8
12
A
GLY
251
A
GLY
254
HELX_P
A
ILE
257
A
ILE
260
1
9
7
A
PRO
258
A
PRO
261
HELX_P
A
LEU
261
A
LEU
264
5
10
4
A
PRO
277
A
PRO
280
HELX_P
A
ASN
288
A
ASN
291
1
11
12
A
THR
290
A
THR
293
HELX_P
A
ARG
296
A
ARG
299
1
12
7
A
PRO
309
A
PRO
312
HELX_P
A
GLU
323
A
GLU
326
1
13
15
LIGASE
structural genomics, Center for Structural Genomics of Infectious Diseases, CSGID, phosphoribosylaminoimidazole synthetase, PurM, AMP, LIGASE
PUR5_VIBCH
UNP
1
1
Q9KPY6
MSGNNPSLSYKDAGVDIDAGNALVERIKGAVKRTRRPEVMGGLGGFGALCELPTKYKHPVLVSGTDGVGTKLRLALDMKK
HDTIGIDLVAMCVNDLIVQGAEPLFFLDYYATGKLDVDTAAEVISGIADGCLQAGCALIGGETAEMPGMYEGEDYDVAGF
CVGVVEKEEIIDGSKVQVGDALIAVGSSGPHSNGYSLVRKILEVSKADKNERLAGKTIGEHLLAPTKIYIKSGLKLIAEH
DIHAISHITGGGFWENIPRVLPEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHEMYRTFNCGVGLIIALPKDQANAAVALL
QAEGETAWVIGEIAAANSNEAQVEIN
1
346
3P4E
1
346
Q9KPY6
A
1
4
349
1
expression tag
SER
-2
3P4E
A
Q9KPY6
UNP
1
1
expression tag
ASN
-1
3P4E
A
Q9KPY6
UNP
2
1
expression tag
ALA
0
3P4E
A
Q9KPY6
UNP
3
2
4
6
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
VAL
39
A
VAL
42
A
MET
40
A
MET
43
A
LEU
49
A
LEU
52
A
CYS
50
A
CYS
53
A
PRO
59
A
PRO
62
A
ASP
66
A
ASP
69
A
TYR
155
A
TYR
158
A
GLU
166
A
GLU
169
A
GLU
102
A
GLU
105
A
THR
112
A
THR
115
A
ALA
137
A
ALA
140
A
GLU
145
A
GLU
148
A
ALA
244
A
ALA
247
A
HIS
247
A
HIS
250
A
VAL
302
A
VAL
305
A
LEU
308
A
LEU
311
A
ALA
181
A
ALA
184
A
GLY
186
A
GLY
189
A
ALA
327
A
ALA
330
A
ALA
335
A
ALA
338
A
THR
265
A
THR
268
A
ASP
270
A
ASP
273
A
VAL
343
A
VAL
346
A
ASN
346
A
ASN
349
A
ARG
212
A
ARG
215
A
LEU
213
A
LEU
216
A
LYS
216
A
LYS
219
A
THR
217
A
THR
220
BINDING SITE FOR RESIDUE AMP A 501
A
AMP
501
Software
13
BINDING SITE FOR RESIDUE GOL A 502
A
GOL
502
Software
8
BINDING SITE FOR RESIDUE CIT A 503
A
CIT
503
Software
11
BINDING SITE FOR RESIDUE EDO A 504
A
EDO
504
Software
4
A
VAL
24
A
VAL
27
13
1_555
A
ASP
108
A
ASP
111
13
1_555
A
ILE
124
A
ILE
127
13
1_555
A
GLY
140
A
GLY
143
13
1_555
A
GLY
141
A
GLY
144
13
1_555
A
GLU
142
A
GLU
145
13
1_555
A
THR
143
A
THR
146
13
1_555
A
HOH
523
F
HOH
13
4_555
A
HOH
606
F
HOH
13
1_555
A
HOH
607
F
HOH
13
1_555
A
HOH
608
F
HOH
13
1_555
A
HOH
609
F
HOH
13
1_555
A
HOH
610
F
HOH
13
1_555
A
LYS
80
A
LYS
83
8
3_665
A
ASP
82
A
ASP
85
8
3_665
A
LEU
213
A
LEU
216
8
1_555
A
TRP
282
A
TRP
285
8
1_555
A
GLU
285
A
GLU
288
8
1_555
A
HOH
432
F
HOH
8
2_654
A
HOH
497
F
HOH
8
1_555
A
HOH
624
F
HOH
8
1_555
A
ASN
193
A
ASN
196
11
1_555
A
GLY
194
A
GLY
197
11
1_555
A
TYR
195
A
TYR
198
11
1_555
A
SER
196
A
SER
199
11
1_555
A
LEU
197
A
LEU
200
11
1_555
A
GLY
250
A
GLY
253
11
1_555
A
HOH
360
F
HOH
11
1_555
A
HOH
535
F
HOH
11
1_555
A
HOH
536
F
HOH
11
1_555
A
HOH
599
F
HOH
11
1_555
A
HOH
600
F
HOH
11
1_555
A
VAL
98
A
VAL
101
4
1_555
A
ILE
171
A
ILE
174
4
1_555
A
ALA
244
A
ALA
247
4
1_555
A
ILE
245
A
ILE
248
4
1_555
154
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