0.010530 0.006080 0.000000 0.000000 0.012159 0.000000 0.000000 0.000000 0.012225 0.00000 0.00000 0.00000 Lemke, C.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.000 90.000 120.000 94.965 94.965 81.800 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C40 H50 N6 O9 S 790.925 N-[(cyclopentyloxy)carbonyl]-3-methyl-L-valyl-(4R)-N-[(1R,2S)-1-carboxy-2-ethenylcyclopropyl]-4-[(7-methoxy-2-{2-[(2-methylpropanoyl)amino]-1,3-thiazol-4-yl}quinolin-4-yl)oxy]-L-prolinamide non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 286 11434 11443 10.1074/jbc.M110.211417 21270126 Combined X-ray, NMR, and kinetic analyses reveal uncommon binding characteristics of the hepatitis C virus NS3-NS4A protease inhibitor BI 201335. 2011 100 1 IMAGE PLATE MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 19663.635 HCV serine protease NS3 3.4.21.98 2 man polymer 1815.277 HCV non-structural protein 4A NS3 interacting peptide 2 syn polymer 22.990 SODIUM ION 2 syn non-polymer 790.925 N-[(cyclopentyloxy)carbonyl]-3-methyl-L-valyl-(4R)-N-[(1R,2S)-1-carboxy-2-ethenylcyclopropyl]-4-[(7-methoxy-2-{2-[(2-methylpropanoyl)amino]-1,3-thiazol-4-yl}quinolin-4-yl)oxy]-L-prolinamide 2 syn non-polymer 18.015 water 66 nat water no no APITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQ DLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGIFRAAVCT RGVAKAVDFIPVESMETTMRASKKKK APITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQ DLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGIFRAAVCT RGVAKAVDFIPVESMETTMRASKKKK A,B polypeptide(L) no no KKGSVVIVGRIILSGRK KKGSVVIVGRIILSGRK C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HCV isolate Japanese sample POLG_HCVJA 11116 Hepatitis C virus 562 Escherichia coli 1 2.48 50.38 VAPOR DIFFUSION, HANGING DROP 6.0 3M NaCl, 0.1M Na Citrate, 2.5% T-butanol, 20mM OBG, 5mM DTT, 3mM sodium azide, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 pdbx_unobs_or_zero_occ_atoms software repository Initial release Version format compliance Other Advisory Refinement description 1 0 2011-01-26 1 1 2011-07-13 1 2 2012-12-12 1 3 2017-11-08 RCSB Y RCSB 2010-10-14 REL REL NA SODIUM ION L5T N-[(cyclopentyloxy)carbonyl]-3-methyl-L-valyl-(4R)-N-[(1R,2S)-1-carboxy-2-ethenylcyclopropyl]-4-[(7-methoxy-2-{2-[(2-methylpropanoyl)amino]-1,3-thiazol-4-yl}quinolin-4-yl)oxy]-L-prolinamide HOH water THESE ARE NATURAL VARIANTS ACCORDING TO UNIPROT. Enzyme inhibitor N-[(CYCLOPENTYLOXY)CARBONYL]-3-METHYL-L-VALYL-(4R)-N-[(1R,2S)-1-CARBOXY-2-ETHENYLCYCLOPROPYL]-4-[(7-METHOXY-2-{2-[(2-METHYLPROPANOYL)AMINO]-1,3-THIAZOL-4-YL}QUINOLIN-4-YL)OXY]-L-PROLINAMIDE Peptide-like NA 1 3 NA NA 187 A L5T 1 4 L5T L5T 188 A NA 2 3 NA NA 187 B L5T 2 4 L5T L5T 188 B HOH 1 5 HOH HOH 189 A HOH 5 5 HOH HOH 190 A HOH 9 5 HOH HOH 191 A HOH 10 5 HOH HOH 192 A HOH 15 5 HOH HOH 193 A HOH 17 5 HOH HOH 194 A HOH 18 5 HOH HOH 195 A HOH 22 5 HOH HOH 196 A HOH 24 5 HOH HOH 197 A HOH 26 5 HOH HOH 198 A HOH 27 5 HOH HOH 199 A HOH 28 5 HOH HOH 200 A HOH 29 5 HOH HOH 201 A HOH 30 5 HOH HOH 202 A HOH 31 5 HOH HOH 203 A HOH 33 5 HOH HOH 204 A HOH 37 5 HOH HOH 205 A HOH 39 5 HOH HOH 206 A HOH 40 5 HOH HOH 207 A HOH 41 5 HOH HOH 208 A HOH 55 5 HOH HOH 209 A HOH 57 5 HOH HOH 210 A HOH 59 5 HOH HOH 211 A HOH 60 5 HOH HOH 212 A HOH 61 5 HOH HOH 213 A HOH 62 5 HOH HOH 214 A HOH 63 5 HOH HOH 215 A HOH 64 5 HOH HOH 216 A HOH 65 5 HOH HOH 217 A HOH 66 5 HOH HOH 218 A HOH 2 5 HOH HOH 189 B HOH 3 5 HOH HOH 190 B HOH 4 5 HOH HOH 191 B HOH 6 5 HOH HOH 192 B HOH 7 5 HOH HOH 193 B HOH 8 5 HOH HOH 194 B HOH 11 5 HOH HOH 195 B HOH 12 5 HOH HOH 196 B HOH 13 5 HOH HOH 197 B HOH 14 5 HOH HOH 198 B HOH 16 5 HOH HOH 199 B HOH 19 5 HOH HOH 200 B HOH 20 5 HOH HOH 201 B HOH 21 5 HOH HOH 202 B HOH 23 5 HOH HOH 203 B HOH 25 5 HOH HOH 204 B HOH 32 5 HOH HOH 205 B HOH 34 5 HOH HOH 206 B HOH 35 5 HOH HOH 207 B HOH 36 5 HOH HOH 208 B HOH 38 5 HOH HOH 209 B HOH 42 5 HOH HOH 210 B HOH 43 5 HOH HOH 211 B HOH 44 5 HOH HOH 212 B HOH 45 5 HOH HOH 213 B HOH 46 5 HOH HOH 214 B HOH 47 5 HOH HOH 215 B HOH 48 5 HOH HOH 216 B HOH 49 5 HOH HOH 217 B HOH 50 5 HOH HOH 218 B HOH 52 5 HOH HOH 219 B HOH 53 5 HOH HOH 220 B HOH 54 5 HOH HOH 221 B HOH 56 5 HOH HOH 222 B HOH 58 5 HOH HOH 223 B HOH 51 5 HOH HOH 51 C ALA 1 n 1 ALA 1 A PRO 2 n 2 PRO 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A ALA 5 n 5 ALA 5 A TYR 6 n 6 TYR 6 A SER 7 n 7 SER 7 A GLN 8 n 8 GLN 8 A GLN 9 n 9 GLN 9 A THR 10 n 10 THR 10 A ARG 11 n 11 ARG 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A LEU 14 n 14 LEU 14 A GLY 15 n 15 GLY 15 A CYS 16 n 16 CYS 16 A ILE 17 n 17 ILE 17 A ILE 18 n 18 ILE 18 A THR 19 n 19 THR 19 A SER 20 n 20 SER 20 A LEU 21 n 21 LEU 21 A THR 22 n 22 THR 22 A GLY 23 n 23 GLY 23 A ARG 24 n 24 ARG 24 A ASP 25 n 25 ASP 25 A LYS 26 n 26 LYS 26 A ASN 27 n 27 ASN 27 A GLN 28 n 28 GLN 28 A VAL 29 n 29 VAL 29 A ASP 30 n 30 ASP 30 A GLY 31 n 31 GLY 31 A GLU 32 n 32 GLU 32 A VAL 33 n 33 VAL 33 A GLN 34 n 34 GLN 34 A VAL 35 n 35 VAL 35 A LEU 36 n 36 LEU 36 A SER 37 n 37 SER 37 A THR 38 n 38 THR 38 A ALA 39 n 39 ALA 39 A THR 40 n 40 THR 40 A GLN 41 n 41 GLN 41 A SER 42 n 42 SER 42 A PHE 43 n 43 PHE 43 A LEU 44 n 44 LEU 44 A ALA 45 n 45 ALA 45 A THR 46 n 46 THR 46 A CYS 47 n 47 CYS 47 A VAL 48 n 48 VAL 48 A ASN 49 n 49 ASN 49 A GLY 50 n 50 GLY 50 A VAL 51 n 51 VAL 51 A CYS 52 n 52 CYS 52 A TRP 53 n 53 TRP 53 A THR 54 n 54 THR 54 A VAL 55 n 55 VAL 55 A TYR 56 n 56 TYR 56 A HIS 57 n 57 HIS 57 A GLY 58 n 58 GLY 58 A ALA 59 n 59 ALA 59 A GLY 60 n 60 GLY 60 A SER 61 n 61 SER 61 A LYS 62 n 62 LYS 62 A THR 63 n 63 THR 63 A LEU 64 n 64 LEU 64 A ALA 65 n 65 ALA 65 A GLY 66 n 66 GLY 66 A PRO 67 n 67 PRO 67 A LYS 68 n 68 LYS 68 A GLY 69 n 69 GLY 69 A PRO 70 n 70 PRO 70 A ILE 71 n 71 ILE 71 A THR 72 n 72 THR 72 A GLN 73 n 73 GLN 73 A MET 74 n 74 MET 74 A TYR 75 n 75 TYR 75 A THR 76 n 76 THR 76 A ASN 77 n 77 ASN 77 A VAL 78 n 78 VAL 78 A ASP 79 n 79 ASP 79 A GLN 80 n 80 GLN 80 A ASP 81 n 81 ASP 81 A LEU 82 n 82 LEU 82 A VAL 83 n 83 VAL 83 A GLY 84 n 84 GLY 84 A TRP 85 n 85 TRP 85 A PRO 86 n 86 PRO 86 A ALA 87 n 87 ALA 87 A PRO 88 n 88 PRO 88 A PRO 89 n 89 PRO 89 A GLY 90 n 90 GLY 90 A ALA 91 n 91 ALA 91 A ARG 92 n 92 ARG 92 A SER 93 n 93 SER 93 A MET 94 n 94 MET 94 A THR 95 n 95 THR 95 A PRO 96 n 96 PRO 96 A CYS 97 n 97 CYS 97 A THR 98 n 98 THR 98 A CYS 99 n 99 CYS 99 A GLY 100 n 100 GLY 100 A SER 101 n 101 SER 101 A SER 102 n 102 SER 102 A ASP 103 n 103 ASP 103 A LEU 104 n 104 LEU 104 A TYR 105 n 105 TYR 105 A LEU 106 n 106 LEU 106 A VAL 107 n 107 VAL 107 A THR 108 n 108 THR 108 A ARG 109 n 109 ARG 109 A HIS 110 n 110 HIS 110 A ALA 111 n 111 ALA 111 A ASP 112 n 112 ASP 112 A VAL 113 n 113 VAL 113 A ILE 114 n 114 ILE 114 A PRO 115 n 115 PRO 115 A VAL 116 n 116 VAL 116 A ARG 117 n 117 ARG 117 A ARG 118 n 118 ARG 118 A ARG 119 n 119 ARG 119 A GLY 120 n 120 GLY 120 A ASP 121 n 121 ASP 121 A SER 122 n 122 SER 122 A ARG 123 n 123 ARG 123 A GLY 124 n 124 GLY 124 A SER 125 n 125 SER 125 A LEU 126 n 126 LEU 126 A LEU 127 n 127 LEU 127 A SER 128 n 128 SER 128 A PRO 129 n 129 PRO 129 A ARG 130 n 130 ARG 130 A PRO 131 n 131 PRO 131 A VAL 132 n 132 VAL 132 A SER 133 n 133 SER 133 A TYR 134 n 134 TYR 134 A LEU 135 n 135 LEU 135 A LYS 136 n 136 LYS 136 A GLY 137 n 137 GLY 137 A SER 138 n 138 SER 138 A SER 139 n 139 SER 139 A GLY 140 n 140 GLY 140 A GLY 141 n 141 GLY 141 A PRO 142 n 142 PRO 142 A LEU 143 n 143 LEU 143 A LEU 144 n 144 LEU 144 A CYS 145 n 145 CYS 145 A PRO 146 n 146 PRO 146 A SER 147 n 147 SER 147 A GLY 148 n 148 GLY 148 A HIS 149 n 149 HIS 149 A VAL 150 n 150 VAL 150 A VAL 151 n 151 VAL 151 A GLY 152 n 152 GLY 152 A ILE 153 n 153 ILE 153 A PHE 154 n 154 PHE 154 A ARG 155 n 155 ARG 155 A ALA 156 n 156 ALA 156 A ALA 157 n 157 ALA 157 A VAL 158 n 158 VAL 158 A CYS 159 n 159 CYS 159 A THR 160 n 160 THR 160 A ARG 161 n 161 ARG 161 A GLY 162 n 162 GLY 162 A VAL 163 n 163 VAL 163 A ALA 164 n 164 ALA 164 A LYS 165 n 165 LYS 165 A ALA 166 n 166 ALA 166 A VAL 167 n 167 VAL 167 A ASP 168 n 168 ASP 168 A PHE 169 n 169 PHE 169 A ILE 170 n 170 ILE 170 A PRO 171 n 171 PRO 171 A VAL 172 n 172 VAL 172 A GLU 173 n 173 GLU 173 A SER 174 n 174 SER 174 A MET 175 n 175 MET 175 A GLU 176 n 176 GLU 176 A THR 177 n 177 THR 177 A THR 178 n 178 THR 178 A MET 179 n 179 MET 179 A ALA 180 n 180 ARG 180 A ALA 181 n 181 ALA 181 A ALA 182 n 182 SER 182 A n 183 183 A n 184 184 A n 185 185 A n 186 186 A ALA 1 n 1 ALA 1 B PRO 2 n 2 PRO 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B ALA 5 n 5 ALA 5 B TYR 6 n 6 TYR 6 B SER 7 n 7 SER 7 B GLN 8 n 8 GLN 8 B GLN 9 n 9 GLN 9 B THR 10 n 10 THR 10 B ARG 11 n 11 ARG 11 B GLY 12 n 12 GLY 12 B LEU 13 n 13 LEU 13 B LEU 14 n 14 LEU 14 B GLY 15 n 15 GLY 15 B CYS 16 n 16 CYS 16 B ILE 17 n 17 ILE 17 B ILE 18 n 18 ILE 18 B THR 19 n 19 THR 19 B SER 20 n 20 SER 20 B LEU 21 n 21 LEU 21 B THR 22 n 22 THR 22 B GLY 23 n 23 GLY 23 B ARG 24 n 24 ARG 24 B ASP 25 n 25 ASP 25 B LYS 26 n 26 LYS 26 B ASN 27 n 27 ASN 27 B GLN 28 n 28 GLN 28 B VAL 29 n 29 VAL 29 B ASP 30 n 30 ASP 30 B GLY 31 n 31 GLY 31 B GLU 32 n 32 GLU 32 B VAL 33 n 33 VAL 33 B GLN 34 n 34 GLN 34 B VAL 35 n 35 VAL 35 B LEU 36 n 36 LEU 36 B SER 37 n 37 SER 37 B THR 38 n 38 THR 38 B ALA 39 n 39 ALA 39 B THR 40 n 40 THR 40 B GLN 41 n 41 GLN 41 B SER 42 n 42 SER 42 B PHE 43 n 43 PHE 43 B LEU 44 n 44 LEU 44 B ALA 45 n 45 ALA 45 B THR 46 n 46 THR 46 B CYS 47 n 47 CYS 47 B VAL 48 n 48 VAL 48 B ASN 49 n 49 ASN 49 B GLY 50 n 50 GLY 50 B VAL 51 n 51 VAL 51 B CYS 52 n 52 CYS 52 B TRP 53 n 53 TRP 53 B THR 54 n 54 THR 54 B VAL 55 n 55 VAL 55 B TYR 56 n 56 TYR 56 B HIS 57 n 57 HIS 57 B GLY 58 n 58 GLY 58 B ALA 59 n 59 ALA 59 B GLY 60 n 60 GLY 60 B SER 61 n 61 SER 61 B LYS 62 n 62 LYS 62 B THR 63 n 63 THR 63 B LEU 64 n 64 LEU 64 B ALA 65 n 65 ALA 65 B GLY 66 n 66 GLY 66 B PRO 67 n 67 PRO 67 B LYS 68 n 68 LYS 68 B GLY 69 n 69 GLY 69 B PRO 70 n 70 PRO 70 B ILE 71 n 71 ILE 71 B THR 72 n 72 THR 72 B GLN 73 n 73 GLN 73 B MET 74 n 74 MET 74 B TYR 75 n 75 TYR 75 B THR 76 n 76 THR 76 B ASN 77 n 77 ASN 77 B VAL 78 n 78 VAL 78 B ASP 79 n 79 ASP 79 B GLN 80 n 80 GLN 80 B ASP 81 n 81 ASP 81 B LEU 82 n 82 LEU 82 B VAL 83 n 83 VAL 83 B GLY 84 n 84 GLY 84 B TRP 85 n 85 TRP 85 B PRO 86 n 86 PRO 86 B ALA 87 n 87 ALA 87 B PRO 88 n 88 PRO 88 B PRO 89 n 89 PRO 89 B GLY 90 n 90 GLY 90 B ALA 91 n 91 ALA 91 B ARG 92 n 92 ARG 92 B SER 93 n 93 SER 93 B MET 94 n 94 MET 94 B THR 95 n 95 THR 95 B PRO 96 n 96 PRO 96 B CYS 97 n 97 CYS 97 B THR 98 n 98 THR 98 B CYS 99 n 99 CYS 99 B GLY 100 n 100 GLY 100 B SER 101 n 101 SER 101 B SER 102 n 102 SER 102 B ASP 103 n 103 ASP 103 B LEU 104 n 104 LEU 104 B TYR 105 n 105 TYR 105 B LEU 106 n 106 LEU 106 B VAL 107 n 107 VAL 107 B THR 108 n 108 THR 108 B ARG 109 n 109 ARG 109 B HIS 110 n 110 HIS 110 B ALA 111 n 111 ALA 111 B ASP 112 n 112 ASP 112 B VAL 113 n 113 VAL 113 B ILE 114 n 114 ILE 114 B PRO 115 n 115 PRO 115 B VAL 116 n 116 VAL 116 B ARG 117 n 117 ARG 117 B ARG 118 n 118 ARG 118 B ARG 119 n 119 ARG 119 B GLY 120 n 120 GLY 120 B ASP 121 n 121 ASP 121 B SER 122 n 122 SER 122 B ARG 123 n 123 ARG 123 B GLY 124 n 124 GLY 124 B SER 125 n 125 SER 125 B LEU 126 n 126 LEU 126 B LEU 127 n 127 LEU 127 B SER 128 n 128 SER 128 B PRO 129 n 129 PRO 129 B ARG 130 n 130 ARG 130 B PRO 131 n 131 PRO 131 B VAL 132 n 132 VAL 132 B SER 133 n 133 SER 133 B TYR 134 n 134 TYR 134 B LEU 135 n 135 LEU 135 B LYS 136 n 136 LYS 136 B GLY 137 n 137 GLY 137 B SER 138 n 138 SER 138 B SER 139 n 139 SER 139 B GLY 140 n 140 GLY 140 B GLY 141 n 141 GLY 141 B PRO 142 n 142 PRO 142 B LEU 143 n 143 LEU 143 B LEU 144 n 144 LEU 144 B CYS 145 n 145 CYS 145 B PRO 146 n 146 PRO 146 B SER 147 n 147 SER 147 B GLY 148 n 148 GLY 148 B HIS 149 n 149 HIS 149 B VAL 150 n 150 VAL 150 B VAL 151 n 151 VAL 151 B GLY 152 n 152 GLY 152 B ILE 153 n 153 ILE 153 B PHE 154 n 154 PHE 154 B ARG 155 n 155 ARG 155 B ALA 156 n 156 ALA 156 B ALA 157 n 157 ALA 157 B VAL 158 n 158 VAL 158 B CYS 159 n 159 CYS 159 B THR 160 n 160 THR 160 B ARG 161 n 161 ARG 161 B GLY 162 n 162 GLY 162 B VAL 163 n 163 VAL 163 B ALA 164 n 164 ALA 164 B LYS 165 n 165 LYS 165 B ALA 166 n 166 ALA 166 B VAL 167 n 167 VAL 167 B ASP 168 n 168 ASP 168 B PHE 169 n 169 PHE 169 B ILE 170 n 170 ILE 170 B PRO 171 n 171 PRO 171 B VAL 172 n 172 VAL 172 B GLU 173 n 173 GLU 173 B SER 174 n 174 SER 174 B MET 175 n 175 MET 175 B GLU 176 n 176 GLU 176 B THR 177 n 177 THR 177 B THR 178 n 178 THR 178 B MET 179 n 179 MET 179 B ALA 180 n 180 ARG 180 B ALA 181 n 181 ALA 181 B ALA 182 n 182 SER 182 B n 183 183 B n 184 184 B n 185 185 B n 186 186 B n 1 219 C GLY 220 n 2 LYS 220 C GLY 221 n 3 GLY 221 C SER 222 n 4 SER 222 C VAL 223 n 5 VAL 223 C VAL 224 n 6 VAL 224 C ILE 225 n 7 ILE 225 C VAL 226 n 8 VAL 226 C GLY 227 n 9 GLY 227 C ARG 228 n 10 ARG 228 C ILE 229 n 11 ILE 229 C ILE 230 n 12 ILE 230 C LEU 231 n 13 LEU 231 C SER 232 n 14 SER 232 C n 15 233 C n 16 234 C n 17 235 C n 1 219 D GLY 220 n 2 LYS 220 D GLY 221 n 3 GLY 221 D SER 222 n 4 SER 222 D VAL 223 n 5 VAL 223 D VAL 224 n 6 VAL 224 D ILE 225 n 7 ILE 225 D VAL 226 n 8 VAL 226 D GLY 227 n 9 GLY 227 D ARG 228 n 10 ARG 228 D ILE 229 n 11 ILE 229 D ILE 230 n 12 ILE 230 D LEU 231 n 13 LEU 231 D SER 232 n 14 SER 232 D n 15 233 D n 16 234 D n 17 235 D author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric 2500 -21 8880 2590 -21 8920 A ALA 5 A O ALA 5 1_555 A NA 187 E NA NA 1_555 A ALA 111 A O ALA 111 1_555 99.2 A ALA 5 A O ALA 5 1_555 A NA 187 E NA NA 1_555 A HOH 197 I O HOH 1_555 96.7 A ALA 111 A O ALA 111 1_555 A NA 187 E NA NA 1_555 A HOH 197 I O HOH 1_555 102.0 A ALA 5 A O ALA 5 1_555 A NA 187 E NA NA 1_555 A HOH 196 I O HOH 1_555 84.8 A ALA 111 A O ALA 111 1_555 A NA 187 E NA NA 1_555 A HOH 196 I O HOH 1_555 168.3 A HOH 197 I O HOH 1_555 A NA 187 E NA NA 1_555 A HOH 196 I O HOH 1_555 88.3 B ALA 111 B O ALA 111 1_555 B NA 187 G NA NA 1_555 B ALA 5 B O ALA 5 1_555 88.9 B ALA 111 B O ALA 111 1_555 B NA 187 G NA NA 1_555 B HOH 207 J O HOH 1_555 96.4 B ALA 5 B O ALA 5 1_555 B NA 187 G NA NA 1_555 B HOH 207 J O HOH 1_555 158.7 B ALA 111 B O ALA 111 1_555 B NA 187 G NA NA 1_555 B HOH 193 J O HOH 1_555 100.0 B ALA 5 B O ALA 5 1_555 B NA 187 G NA NA 1_555 B HOH 193 J O HOH 1_555 83.2 B HOH 207 J O HOH 1_555 B NA 187 G NA NA 1_555 B HOH 193 J O HOH 1_555 75.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 6 A N TYR 6 C O ILE 230 C O ILE 12 C O GLY 227 C O GLY 9 A N VAL 35 A N VAL 35 A N LEU 36 A N LEU 36 A O PHE 43 A O PHE 43 A N THR 46 A N THR 46 A O TRP 53 A O TRP 53 A N CYS 52 A N CYS 52 A O TRP 85 A O TRP 85 A O LEU 82 A O LEU 82 A N ASN 77 A N ASN 77 A N LEU 104 A N LEU 104 A O VAL 116 A O VAL 116 A N ARG 117 A N ARG 117 A O SER 125 A O SER 125 A N ARG 130 A N ARG 130 A O ALA 164 A O ALA 164 A O ASP 168 A O ASP 168 A N ALA 156 A N ALA 156 A O VAL 151 A O VAL 151 A N LEU 143 A N LEU 143 A O LEU 144 A O LEU 144 A N TYR 105 A N TYR 105 B N TYR 6 B N TYR 6 D O ILE 230 D O ILE 12 D O GLY 227 D O GLY 9 B N VAL 35 B N VAL 35 B N LEU 36 B N LEU 36 B O PHE 43 B O PHE 43 B N THR 46 B N THR 46 B O TRP 53 B O TRP 53 B N CYS 52 B N CYS 52 B O TRP 85 B O TRP 85 B O LEU 82 B O LEU 82 B N ASN 77 B N ASN 77 B N LEU 104 B N LEU 104 B O VAL 116 B O VAL 116 B N ARG 117 B N ARG 117 B O SER 125 B O SER 125 B N GLY 124 B N GLY 124 B O VAL 167 B O VAL 167 B O ASP 168 B O ASP 168 B N ALA 156 B N ALA 156 B O GLY 152 B O GLY 152 B N LEU 143 B N LEU 143 B O LEU 144 B O LEU 144 B N TYR 105 B N TYR 105 1 A CG ARG 180 A CG ARG 180 1 Y 1 A CD ARG 180 A CD ARG 180 1 Y 1 A NE ARG 180 A NE ARG 180 1 Y 1 A CZ ARG 180 A CZ ARG 180 1 Y 1 A NH1 ARG 180 A NH1 ARG 180 1 Y 1 A NH2 ARG 180 A NH2 ARG 180 1 Y 1 A OG SER 182 A OG SER 182 1 Y 1 B CG ARG 180 B CG ARG 180 1 Y 1 B CD ARG 180 B CD ARG 180 1 Y 1 B NE ARG 180 B NE ARG 180 1 Y 1 B CZ ARG 180 B CZ ARG 180 1 Y 1 B NH1 ARG 180 B NH1 ARG 180 1 Y 1 B NH2 ARG 180 B NH2 ARG 180 1 Y 1 B OG SER 182 B OG SER 182 1 Y 1 C CB LYS 220 C CB LYS 2 1 Y 1 C CG LYS 220 C CG LYS 2 1 Y 1 C CD LYS 220 C CD LYS 2 1 Y 1 C CE LYS 220 C CE LYS 2 1 Y 1 C NZ LYS 220 C NZ LYS 2 1 Y 1 D CB LYS 220 D CB LYS 2 1 Y 1 D CG LYS 220 D CG LYS 2 1 Y 1 D CD LYS 220 D CD LYS 2 1 Y 1 D CE LYS 220 D CE LYS 2 1 Y 1 D NZ LYS 220 D NZ LYS 2 1 Y 1 A LYS 183 A LYS 183 1 Y 1 A LYS 184 A LYS 184 1 Y 1 A LYS 185 A LYS 185 1 Y 1 A LYS 186 A LYS 186 1 Y 1 B LYS 183 B LYS 183 1 Y 1 B LYS 184 B LYS 184 1 Y 1 B LYS 185 B LYS 185 1 Y 1 B LYS 186 B LYS 186 1 Y 1 C LYS 219 C LYS 1 1 Y 1 C GLY 233 C GLY 15 1 Y 1 C ARG 234 C ARG 16 1 Y 1 C LYS 235 C LYS 17 1 Y 1 D LYS 219 D LYS 1 1 Y 1 D GLY 233 D GLY 15 1 Y 1 D ARG 234 D ARG 16 1 Y 1 D LYS 235 D LYS 17 1 Y 1 A THR 38 -111.96 -167.05 1 A ALA 181 -81.34 34.85 1 B THR 38 -111.60 -157.58 1 B VAL 172 -59.60 -3.62 1 B ARG 180 -79.99 43.38 1 B ALA 181 -147.81 -13.19 protein_rep.param protein.top dna-rna_rep.param dna-rna.top water_rep.param water.top ion.param ion.top BI00201335_mod.par BI00201335_mod.top 97.180 48.4143 26.310 0.1140 0.0360 0.0000 0.1140 0.0000 -0.2270 0.2553 0.2077 2.3000 40.0000 872 17940 4.7000 95.9000 1.000 0.000 Random 1 0.000 MOLECULAR REPLACEMENT 2.3000 40.0000 66 3014 114 0 2834 0.009 0.982 1.609 1.500 2.311 2.000 2.740 2.000 3.277 2.500 2.300 40.000 3P8O 18452 0.048 1.003 1 23.200 10.600 98.600 0.383 2.300 2.380 1655 0.991 1 7.700 88.600 0.320 2.380 2.480 1812 1.000 1 9.000 97.800 0.289 2.480 2.590 1859 0.983 1 10.200 99.900 0.193 2.590 2.730 1869 1.018 1 10.900 100.000 0.124 2.730 2.900 1854 0.998 1 11.200 100.000 0.084 2.900 3.120 1857 0.974 1 11.300 100.000 0.059 3.120 3.440 1874 0.970 1 11.300 100.000 0.042 3.440 3.930 1885 0.986 1 11.300 100.000 0.032 3.930 4.950 1870 1.019 1 11.200 99.900 0.031 4.950 40.000 1917 1.082 1 11.100 99.600 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns-online.org/ CNS package data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data collection MAR345dtb phasing CNS HCV serine protease NS3 (E.C.3.4.21.98), HCV non-structural protein 4A Crystal structure of HCV NS3/NS4A protease complexed with des-bromine analogue of BI 201335 1 N N 1 N N 2 N N 2 N N 3 N N 4 N N 3 N N 4 N N 5 N N 5 N N 5 N N A GLY 12 A GLY 12 HELX_P A GLY 23 A GLY 23 1 1 12 A VAL 55 A VAL 55 HELX_P A GLY 60 A GLY 60 1 2 6 A VAL 132 A VAL 132 HELX_P A LYS 136 A LYS 136 1 3 5 A GLU 173 A GLU 173 HELX_P A ALA 181 A ALA 181 1 4 9 B GLY 12 B GLY 12 HELX_P B GLY 23 B GLY 23 1 5 12 B TYR 56 B TYR 56 HELX_P B GLY 60 B GLY 60 1 6 5 B VAL 132 B VAL 132 HELX_P B LYS 136 B LYS 136 1 7 5 B VAL 172 B VAL 172 HELX_P B ARG 180 B ARG 180 1 8 9 disulf 2.036 A CYS 97 A SG CYS 97 1_555 A CYS 145 A SG CYS 145 1_555 disulf 2.039 B CYS 97 B SG CYS 97 1_555 B CYS 145 B SG CYS 145 1_555 metalc 1.984 A ALA 5 A O ALA 5 1_555 A NA 187 E NA NA 1_555 metalc 2.249 B ALA 111 B O ALA 111 1_555 B NA 187 G NA NA 1_555 metalc 2.302 A ALA 111 A O ALA 111 1_555 A NA 187 E NA NA 1_555 metalc 2.500 B ALA 5 B O ALA 5 1_555 B NA 187 G NA NA 1_555 metalc 2.445 B NA 187 G NA NA 1_555 B HOH 207 J O HOH 1_555 metalc 2.515 A NA 187 E NA NA 1_555 A HOH 197 I O HOH 1_555 metalc 2.629 B NA 187 G NA NA 1_555 B HOH 193 J O HOH 1_555 metalc 2.681 A NA 187 E NA NA 1_555 A HOH 196 I O HOH 1_555 HYDROLASE/HYDROLASE inhibitor Hepatitis C Virus, NS3, NS4A, halogen bond, serine protease, HYDROLASE-HYDROLASE inhibitor complex POLG_HCVJA UNP 1 1027 P26662 APITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQ DLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVVPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPSGHVVGIFRAAVCT RGVAKAVDFIPVESMETTMR 3P8O PDB 2 3P8O 1027 1206 3P8O 1 180 P26662 A 1 1 180 1027 1206 3P8O 1 180 P26662 B 1 1 180 219 235 3P8O 219 235 3P8O C 2 1 17 219 235 3P8O 219 235 3P8O D 2 1 17 1 VAL SEE REMARK 999 ILE 114 3P8O A P26662 UNP 1140 114 1 ILE SEE REMARK 999 VAL 132 3P8O A P26662 UNP 1158 132 1 EXPRESSION TAG ALA 181 3P8O A P26662 UNP 181 1 EXPRESSION TAG SER 182 3P8O A P26662 UNP 182 1 EXPRESSION TAG LYS 183 3P8O A P26662 UNP 183 1 EXPRESSION TAG LYS 184 3P8O A P26662 UNP 184 1 EXPRESSION TAG LYS 185 3P8O A P26662 UNP 185 1 EXPRESSION TAG LYS 186 3P8O A P26662 UNP 186 2 VAL SEE REMARK 999 ILE 114 3P8O B P26662 UNP 1140 114 2 ILE SEE REMARK 999 VAL 132 3P8O B P26662 UNP 1158 132 2 EXPRESSION TAG ALA 181 3P8O B P26662 UNP 181 2 EXPRESSION TAG SER 182 3P8O B P26662 UNP 182 2 EXPRESSION TAG LYS 183 3P8O B P26662 UNP 183 2 EXPRESSION TAG LYS 184 3P8O B P26662 UNP 184 2 EXPRESSION TAG LYS 185 3P8O B P26662 UNP 185 2 EXPRESSION TAG LYS 186 3P8O B P26662 UNP 186 7 7 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 4 A THR 4 A GLN 9 A GLN 9 C VAL 224 C VAL 6 C SER 232 C SER 14 A VAL 33 A VAL 33 A SER 37 A SER 37 A SER 42 A SER 42 A VAL 48 A VAL 48 A VAL 51 A VAL 51 A THR 54 A THR 54 A LEU 82 A LEU 82 A PRO 86 A PRO 86 A TYR 75 A TYR 75 A ASN 77 A ASN 77 A ASP 103 A ASP 103 A VAL 107 A VAL 107 A VAL 113 A VAL 113 A ARG 118 A ARG 118 A ARG 123 A ARG 123 A PRO 131 A PRO 131 A VAL 163 A VAL 163 A PRO 171 A PRO 171 A VAL 150 A VAL 150 A THR 160 A THR 160 A PRO 142 A PRO 142 A LEU 144 A LEU 144 A ASP 103 A ASP 103 A VAL 107 A VAL 107 B ALA 5 B ALA 5 B GLN 9 B GLN 9 D VAL 224 D VAL 6 D LEU 231 D LEU 13 B VAL 33 B VAL 33 B SER 37 B SER 37 B SER 42 B SER 42 B VAL 48 B VAL 48 B VAL 51 B VAL 51 B VAL 55 B VAL 55 B LEU 82 B LEU 82 B PRO 86 B PRO 86 B TYR 75 B TYR 75 B ASN 77 B ASN 77 B ASP 103 B ASP 103 B VAL 107 B VAL 107 B VAL 113 B VAL 113 B ARG 118 B ARG 118 B ARG 123 B ARG 123 B PRO 131 B PRO 131 B VAL 163 B VAL 163 B PRO 171 B PRO 171 B VAL 150 B VAL 150 B THR 160 B THR 160 B PRO 142 B PRO 142 B LEU 144 B LEU 144 B ASP 103 B ASP 103 B VAL 107 B VAL 107 BINDING SITE FOR RESIDUE NA A 187 Software 4 BINDING SITE FOR RESIDUE L5T A 188 Software 18 BINDING SITE FOR RESIDUE NA B 187 Software 4 BINDING SITE FOR RESIDUE L5T B 188 Software 19 A ALA 5 A ALA 5 4 1_555 A ALA 111 A ALA 111 4 1_555 A HOH 196 I HOH 4 1_555 A HOH 197 I HOH 4 1_555 A TYR 56 A TYR 56 18 1_555 A HIS 57 A HIS 57 18 1_555 A VAL 78 A VAL 78 18 1_555 A ASP 81 A ASP 81 18 1_555 A LEU 135 A LEU 135 18 1_555 A LYS 136 A LYS 136 18 1_555 A GLY 137 A GLY 137 18 1_555 A SER 138 A SER 138 18 1_555 A SER 139 A SER 139 18 1_555 A PHE 154 A PHE 154 18 1_555 A ARG 155 A ARG 155 18 1_555 A ALA 156 A ALA 156 18 1_555 A ALA 157 A ALA 157 18 1_555 A VAL 158 A VAL 158 18 1_555 A CYS 159 A CYS 159 18 1_555 A ASP 168 A ASP 168 18 1_555 A HOH 209 I HOH 18 1_555 A HOH 216 I HOH 18 1_555 B ALA 5 B ALA 5 4 1_555 B ALA 111 B ALA 111 4 1_555 B HOH 193 J HOH 4 1_555 B HOH 207 J HOH 4 1_555 B TYR 56 B TYR 56 19 1_555 B HIS 57 B HIS 57 19 1_555 B VAL 78 B VAL 78 19 1_555 B ASP 81 B ASP 81 19 1_555 B ARG 123 B ARG 123 19 1_555 B VAL 132 B VAL 132 19 1_555 B LEU 135 B LEU 135 19 1_555 B LYS 136 B LYS 136 19 1_555 B GLY 137 B GLY 137 19 1_555 B SER 138 B SER 138 19 1_555 B SER 139 B SER 139 19 1_555 B PHE 154 B PHE 154 19 1_555 B ARG 155 B ARG 155 19 1_555 B ALA 156 B ALA 156 19 1_555 B ALA 157 B ALA 157 19 1_555 B CYS 159 B CYS 159 19 1_555 B HOH 208 J HOH 19 1_555 B HOH 220 J HOH 19 1_555 B HOH 222 J HOH 19 1_555 169 P 61