0.022609
0.000000
0.000000
0.000000
0.017590
0.000000
0.000000
0.000000
0.009962
0.000000
0.000000
0.000000
Cuneo, M.J.
Krahn, J.M.
London, R.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
44.230
56.850
100.380
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
39
7816
7827
10.1093/nar/gkr419
21652643
The structural basis for partitioning of the XRCC1/DNA ligase III-{alpha} BRCT-mediated dimer complexes.
2011
10.2210/pdb3pc6/pdb
pdb_00003pc6
100
1
IMAGE PLATE
2010-08-16
MAR scanner 345 mm plate
Si 111 crystal
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
22-ID
APS
1.0
SYNCHROTRON
APS BEAMLINE 22-ID
12588.151
DNA repair protein XRCC1
XRCC1 second BRCT domain (unp residues 534-630)
2
man
polymer
18.015
water
182
nat
water
X-ray repair cross-complementing protein 1
no
no
MPELPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSC
NEKQKLLPHQLYGVVPQAHHHHHH
MPELPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSC
NEKQKLLPHQLYGVVPQAHHHHHH
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Xrcc-1, Xrcc1
10090
Mus musculus
469008
Escherichia coli
BL21-DE3-RIL
Plasmid
pet21a
1
2.51
50.92
VAPOR DIFFUSION, HANGING DROP
7.5
0.6M NaFormate, 0.2M NaHEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Database references
Refinement description
Data collection
Database references
Refinement description
1
0
2011-06-15
1
1
2011-07-13
1
2
2011-11-02
1
3
2017-11-08
1
4
2023-09-06
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2010-10-21
REL
REL
HOH
water
1CDZ
PDB ENTRY 1CDZ
PDB
experimental model
HOH
2
2
HOH
HOH
2
A
HOH
6
2
HOH
HOH
6
A
HOH
7
2
HOH
HOH
7
A
HOH
12
2
HOH
HOH
12
A
HOH
16
2
HOH
HOH
16
A
HOH
19
2
HOH
HOH
19
A
HOH
27
2
HOH
HOH
27
A
HOH
28
2
HOH
HOH
28
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
32
2
HOH
HOH
32
A
HOH
34
2
HOH
HOH
34
A
HOH
35
2
HOH
HOH
35
A
HOH
39
2
HOH
HOH
39
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
43
2
HOH
HOH
43
A
HOH
46
2
HOH
HOH
46
A
HOH
47
2
HOH
HOH
47
A
HOH
48
2
HOH
HOH
48
A
HOH
50
2
HOH
HOH
50
A
HOH
55
2
HOH
HOH
55
A
HOH
57
2
HOH
HOH
57
A
HOH
59
2
HOH
HOH
59
A
HOH
60
2
HOH
HOH
60
A
HOH
61
2
HOH
HOH
61
A
HOH
62
2
HOH
HOH
62
A
HOH
65
2
HOH
HOH
65
A
HOH
69
2
HOH
HOH
69
A
HOH
72
2
HOH
HOH
72
A
HOH
74
2
HOH
HOH
74
A
HOH
77
2
HOH
HOH
77
A
HOH
80
2
HOH
HOH
80
A
HOH
81
2
HOH
HOH
81
A
HOH
83
2
HOH
HOH
83
A
HOH
84
2
HOH
HOH
84
A
HOH
91
2
HOH
HOH
91
A
HOH
94
2
HOH
HOH
94
A
HOH
96
2
HOH
HOH
96
A
HOH
98
2
HOH
HOH
98
A
HOH
101
2
HOH
HOH
101
A
HOH
103
2
HOH
HOH
103
A
HOH
104
2
HOH
HOH
104
A
HOH
106
2
HOH
HOH
106
A
HOH
107
2
HOH
HOH
107
A
HOH
109
2
HOH
HOH
109
A
HOH
110
2
HOH
HOH
110
A
HOH
112
2
HOH
HOH
112
A
HOH
115
2
HOH
HOH
115
A
HOH
116
2
HOH
HOH
116
A
HOH
117
2
HOH
HOH
117
A
HOH
118
2
HOH
HOH
118
A
HOH
120
2
HOH
HOH
120
A
HOH
122
2
HOH
HOH
122
A
HOH
123
2
HOH
HOH
123
A
HOH
124
2
HOH
HOH
124
A
HOH
127
2
HOH
HOH
127
A
HOH
131
2
HOH
HOH
131
A
HOH
132
2
HOH
HOH
132
A
HOH
133
2
HOH
HOH
133
A
HOH
134
2
HOH
HOH
134
A
HOH
136
2
HOH
HOH
136
A
HOH
141
2
HOH
HOH
141
A
HOH
142
2
HOH
HOH
142
A
HOH
143
2
HOH
HOH
143
A
HOH
144
2
HOH
HOH
144
A
HOH
146
2
HOH
HOH
146
A
HOH
148
2
HOH
HOH
148
A
HOH
151
2
HOH
HOH
151
A
HOH
153
2
HOH
HOH
153
A
HOH
157
2
HOH
HOH
157
A
HOH
158
2
HOH
HOH
158
A
HOH
159
2
HOH
HOH
159
A
HOH
160
2
HOH
HOH
160
A
HOH
161
2
HOH
HOH
161
A
HOH
162
2
HOH
HOH
162
A
HOH
163
2
HOH
HOH
163
A
HOH
164
2
HOH
HOH
164
A
HOH
166
2
HOH
HOH
166
A
HOH
167
2
HOH
HOH
167
A
HOH
170
2
HOH
HOH
170
A
HOH
171
2
HOH
HOH
171
A
HOH
174
2
HOH
HOH
174
A
HOH
175
2
HOH
HOH
175
A
HOH
180
2
HOH
HOH
180
A
HOH
183
2
HOH
HOH
183
A
HOH
184
2
HOH
HOH
184
A
HOH
185
2
HOH
HOH
185
A
HOH
1
2
HOH
HOH
1
B
HOH
3
2
HOH
HOH
3
B
HOH
4
2
HOH
HOH
4
B
HOH
5
2
HOH
HOH
5
B
HOH
8
2
HOH
HOH
8
B
HOH
9
2
HOH
HOH
9
B
HOH
10
2
HOH
HOH
10
B
HOH
11
2
HOH
HOH
11
B
HOH
13
2
HOH
HOH
13
B
HOH
14
2
HOH
HOH
14
B
HOH
15
2
HOH
HOH
15
B
HOH
17
2
HOH
HOH
17
B
HOH
18
2
HOH
HOH
18
B
HOH
20
2
HOH
HOH
20
B
HOH
21
2
HOH
HOH
21
B
HOH
22
2
HOH
HOH
22
B
HOH
23
2
HOH
HOH
23
B
HOH
24
2
HOH
HOH
24
B
HOH
25
2
HOH
HOH
25
B
HOH
26
2
HOH
HOH
26
B
HOH
31
2
HOH
HOH
31
B
HOH
33
2
HOH
HOH
33
B
HOH
36
2
HOH
HOH
36
B
HOH
37
2
HOH
HOH
37
B
HOH
38
2
HOH
HOH
38
B
HOH
40
2
HOH
HOH
40
B
HOH
44
2
HOH
HOH
44
B
HOH
45
2
HOH
HOH
45
B
HOH
49
2
HOH
HOH
49
B
HOH
51
2
HOH
HOH
51
B
HOH
52
2
HOH
HOH
52
B
HOH
53
2
HOH
HOH
53
B
HOH
54
2
HOH
HOH
54
B
HOH
56
2
HOH
HOH
56
B
HOH
58
2
HOH
HOH
58
B
HOH
63
2
HOH
HOH
63
B
HOH
64
2
HOH
HOH
64
B
HOH
66
2
HOH
HOH
66
B
HOH
67
2
HOH
HOH
67
B
HOH
68
2
HOH
HOH
68
B
HOH
70
2
HOH
HOH
70
B
HOH
71
2
HOH
HOH
71
B
HOH
73
2
HOH
HOH
73
B
HOH
75
2
HOH
HOH
75
B
HOH
76
2
HOH
HOH
76
B
HOH
78
2
HOH
HOH
78
B
HOH
79
2
HOH
HOH
79
B
HOH
82
2
HOH
HOH
82
B
HOH
85
2
HOH
HOH
85
B
HOH
86
2
HOH
HOH
86
B
HOH
87
2
HOH
HOH
87
B
HOH
88
2
HOH
HOH
88
B
HOH
89
2
HOH
HOH
89
B
HOH
90
2
HOH
HOH
90
B
HOH
92
2
HOH
HOH
92
B
HOH
95
2
HOH
HOH
95
B
HOH
97
2
HOH
HOH
97
B
HOH
99
2
HOH
HOH
99
B
HOH
100
2
HOH
HOH
100
B
HOH
102
2
HOH
HOH
102
B
HOH
105
2
HOH
HOH
105
B
HOH
111
2
HOH
HOH
111
B
HOH
113
2
HOH
HOH
113
B
HOH
114
2
HOH
HOH
114
B
HOH
119
2
HOH
HOH
119
B
HOH
121
2
HOH
HOH
121
B
HOH
125
2
HOH
HOH
125
B
HOH
126
2
HOH
HOH
126
B
HOH
128
2
HOH
HOH
128
B
HOH
129
2
HOH
HOH
129
B
HOH
130
2
HOH
HOH
130
B
HOH
135
2
HOH
HOH
135
B
HOH
137
2
HOH
HOH
137
B
HOH
138
2
HOH
HOH
138
B
HOH
139
2
HOH
HOH
139
B
HOH
140
2
HOH
HOH
140
B
HOH
145
2
HOH
HOH
145
B
HOH
147
2
HOH
HOH
147
B
HOH
149
2
HOH
HOH
149
B
HOH
150
2
HOH
HOH
150
B
HOH
152
2
HOH
HOH
152
B
HOH
154
2
HOH
HOH
154
B
HOH
155
2
HOH
HOH
155
B
HOH
165
2
HOH
HOH
165
B
HOH
168
2
HOH
HOH
168
B
HOH
169
2
HOH
HOH
169
B
HOH
172
2
HOH
HOH
172
B
HOH
173
2
HOH
HOH
173
B
HOH
176
2
HOH
HOH
176
B
HOH
177
2
HOH
HOH
177
B
HOH
178
2
HOH
HOH
178
B
HOH
179
2
HOH
HOH
179
B
HOH
181
2
HOH
HOH
181
B
HOH
182
2
HOH
HOH
182
B
n
1
534
A
n
2
535
A
GLU
536
n
3
GLU
536
A
LEU
537
n
4
LEU
537
A
PRO
538
n
5
PRO
538
A
ASP
539
n
6
ASP
539
A
PHE
540
n
7
PHE
540
A
PHE
541
n
8
PHE
541
A
GLU
542
n
9
GLU
542
A
GLY
543
n
10
GLY
543
A
LYS
544
n
11
LYS
544
A
HIS
545
n
12
HIS
545
A
PHE
546
n
13
PHE
546
A
PHE
547
n
14
PHE
547
A
LEU
548
n
15
LEU
548
A
TYR
549
n
16
TYR
549
A
GLY
550
n
17
GLY
550
A
GLU
551
n
18
GLU
551
A
PHE
552
n
19
PHE
552
A
PRO
553
n
20
PRO
553
A
GLY
554
n
21
GLY
554
A
ASP
555
n
22
ASP
555
A
GLU
556
n
23
GLU
556
A
ARG
557
n
24
ARG
557
A
ARG
558
n
25
ARG
558
A
ARG
559
n
26
ARG
559
A
LEU
560
n
27
LEU
560
A
ILE
561
n
28
ILE
561
A
ARG
562
n
29
ARG
562
A
TYR
563
n
30
TYR
563
A
VAL
564
n
31
VAL
564
A
THR
565
n
32
THR
565
A
ALA
566
n
33
ALA
566
A
PHE
567
n
34
PHE
567
A
ASN
568
n
35
ASN
568
A
GLY
569
n
36
GLY
569
A
GLU
570
n
37
GLU
570
A
LEU
571
n
38
LEU
571
A
GLU
572
n
39
GLU
572
A
ASP
573
n
40
ASP
573
A
TYR
574
n
41
TYR
574
A
MET
575
n
42
MET
575
A
ASN
576
n
43
ASN
576
A
GLU
577
n
44
GLU
577
A
ARG
578
n
45
ARG
578
A
VAL
579
n
46
VAL
579
A
GLN
580
n
47
GLN
580
A
PHE
581
n
48
PHE
581
A
VAL
582
n
49
VAL
582
A
ILE
583
n
50
ILE
583
A
THR
584
n
51
THR
584
A
ALA
585
n
52
ALA
585
A
GLN
586
n
53
GLN
586
A
GLU
587
n
54
GLU
587
A
TRP
588
n
55
TRP
588
A
ASP
589
n
56
ASP
589
A
PRO
590
n
57
PRO
590
A
ASN
591
n
58
ASN
591
A
PHE
592
n
59
PHE
592
A
GLU
593
n
60
GLU
593
A
GLU
594
n
61
GLU
594
A
ALA
595
n
62
ALA
595
A
LEU
596
n
63
LEU
596
A
MET
597
n
64
MET
597
A
GLU
598
n
65
GLU
598
A
ASN
599
n
66
ASN
599
A
PRO
600
n
67
PRO
600
A
SER
601
n
68
SER
601
A
LEU
602
n
69
LEU
602
A
ALA
603
n
70
ALA
603
A
PHE
604
n
71
PHE
604
A
VAL
605
n
72
VAL
605
A
ARG
606
n
73
ARG
606
A
PRO
607
n
74
PRO
607
A
ARG
608
n
75
ARG
608
A
TRP
609
n
76
TRP
609
A
ILE
610
n
77
ILE
610
A
TYR
611
n
78
TYR
611
A
SER
612
n
79
SER
612
A
CYS
613
n
80
CYS
613
A
ASN
614
n
81
ASN
614
A
GLU
615
n
82
GLU
615
A
LYS
616
n
83
LYS
616
A
GLN
617
n
84
GLN
617
A
LYS
618
n
85
LYS
618
A
LEU
619
n
86
LEU
619
A
LEU
620
n
87
LEU
620
A
PRO
621
n
88
PRO
621
A
HIS
622
n
89
HIS
622
A
GLN
623
n
90
GLN
623
A
LEU
624
n
91
LEU
624
A
TYR
625
n
92
TYR
625
A
GLY
626
n
93
GLY
626
A
VAL
627
n
94
VAL
627
A
VAL
628
n
95
VAL
628
A
PRO
629
n
96
PRO
629
A
GLN
630
n
97
GLN
630
A
ALA
631
n
98
ALA
631
A
HIS
632
n
99
HIS
632
A
HIS
633
n
100
HIS
633
A
HIS
634
n
101
HIS
634
A
n
102
635
A
n
103
636
A
n
104
637
A
n
1
534
B
PRO
535
n
2
PRO
535
B
GLU
536
n
3
GLU
536
B
LEU
537
n
4
LEU
537
B
PRO
538
n
5
PRO
538
B
ASP
539
n
6
ASP
539
B
PHE
540
n
7
PHE
540
B
PHE
541
n
8
PHE
541
B
GLU
542
n
9
GLU
542
B
GLY
543
n
10
GLY
543
B
LYS
544
n
11
LYS
544
B
HIS
545
n
12
HIS
545
B
PHE
546
n
13
PHE
546
B
PHE
547
n
14
PHE
547
B
LEU
548
n
15
LEU
548
B
TYR
549
n
16
TYR
549
B
GLY
550
n
17
GLY
550
B
GLU
551
n
18
GLU
551
B
PHE
552
n
19
PHE
552
B
PRO
553
n
20
PRO
553
B
GLY
554
n
21
GLY
554
B
ASP
555
n
22
ASP
555
B
GLU
556
n
23
GLU
556
B
ARG
557
n
24
ARG
557
B
ARG
558
n
25
ARG
558
B
ARG
559
n
26
ARG
559
B
LEU
560
n
27
LEU
560
B
ILE
561
n
28
ILE
561
B
ARG
562
n
29
ARG
562
B
TYR
563
n
30
TYR
563
B
VAL
564
n
31
VAL
564
B
THR
565
n
32
THR
565
B
ALA
566
n
33
ALA
566
B
PHE
567
n
34
PHE
567
B
ASN
568
n
35
ASN
568
B
GLY
569
n
36
GLY
569
B
GLU
570
n
37
GLU
570
B
LEU
571
n
38
LEU
571
B
GLU
572
n
39
GLU
572
B
ASP
573
n
40
ASP
573
B
TYR
574
n
41
TYR
574
B
MET
575
n
42
MET
575
B
ASN
576
n
43
ASN
576
B
GLU
577
n
44
GLU
577
B
ARG
578
n
45
ARG
578
B
VAL
579
n
46
VAL
579
B
GLN
580
n
47
GLN
580
B
PHE
581
n
48
PHE
581
B
VAL
582
n
49
VAL
582
B
ILE
583
n
50
ILE
583
B
THR
584
n
51
THR
584
B
ALA
585
n
52
ALA
585
B
GLN
586
n
53
GLN
586
B
GLU
587
n
54
GLU
587
B
TRP
588
n
55
TRP
588
B
ASP
589
n
56
ASP
589
B
PRO
590
n
57
PRO
590
B
ASN
591
n
58
ASN
591
B
PHE
592
n
59
PHE
592
B
GLU
593
n
60
GLU
593
B
GLU
594
n
61
GLU
594
B
ALA
595
n
62
ALA
595
B
LEU
596
n
63
LEU
596
B
MET
597
n
64
MET
597
B
GLU
598
n
65
GLU
598
B
ASN
599
n
66
ASN
599
B
PRO
600
n
67
PRO
600
B
SER
601
n
68
SER
601
B
LEU
602
n
69
LEU
602
B
ALA
603
n
70
ALA
603
B
PHE
604
n
71
PHE
604
B
VAL
605
n
72
VAL
605
B
ARG
606
n
73
ARG
606
B
PRO
607
n
74
PRO
607
B
ARG
608
n
75
ARG
608
B
TRP
609
n
76
TRP
609
B
ILE
610
n
77
ILE
610
B
TYR
611
n
78
TYR
611
B
SER
612
n
79
SER
612
B
CYS
613
n
80
CYS
613
B
ASN
614
n
81
ASN
614
B
GLU
615
n
82
GLU
615
B
LYS
616
n
83
LYS
616
B
GLN
617
n
84
GLN
617
B
LYS
618
n
85
LYS
618
B
LEU
619
n
86
LEU
619
B
LEU
620
n
87
LEU
620
B
PRO
621
n
88
PRO
621
B
HIS
622
n
89
HIS
622
B
GLN
623
n
90
GLN
623
B
LEU
624
n
91
LEU
624
B
TYR
625
n
92
TYR
625
B
GLY
626
n
93
GLY
626
B
VAL
627
n
94
VAL
627
B
VAL
628
n
95
VAL
628
B
PRO
629
n
96
PRO
629
B
GLN
630
n
97
GLN
630
B
ALA
631
n
98
ALA
631
B
HIS
632
n
99
HIS
632
B
HIS
633
n
100
HIS
633
B
HIS
634
n
101
HIS
634
B
HIS
635
n
102
HIS
635
B
HIS
636
n
103
HIS
636
B
HIS
637
n
104
HIS
637
B
author_defined_assembly
2
dimeric
1390
-10
12040
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
570
A
O
GLU
37
A
N
PHE
546
A
N
PHE
13
A
N
TYR
549
A
N
TYR
16
A
O
ILE
583
A
O
ILE
50
A
N
VAL
582
A
N
VAL
49
A
O
ALA
603
A
O
ALA
70
B
O
GLU
570
B
O
GLU
37
B
N
PHE
546
B
N
PHE
13
B
N
TYR
549
B
N
TYR
16
B
O
ILE
583
B
O
ILE
50
B
N
VAL
582
B
N
VAL
49
B
O
ALA
603
B
O
ALA
70
1
A
CD
GLU
542
A
CD
GLU
9
1
Y
1
A
OE1
GLU
542
A
OE1
GLU
9
1
Y
1
A
OE2
GLU
542
A
OE2
GLU
9
1
Y
1
A
CD
GLU
587
A
CD
GLU
54
1
Y
1
A
OE1
GLU
587
A
OE1
GLU
54
1
Y
1
A
OE2
GLU
587
A
OE2
GLU
54
1
Y
1
A
CG
GLU
594
A
CG
GLU
61
1
Y
1
A
CD
GLU
594
A
CD
GLU
61
1
Y
1
A
OE1
GLU
594
A
OE1
GLU
61
1
Y
1
A
OE2
GLU
594
A
OE2
GLU
61
1
Y
1
B
N
PRO
535
B
N
PRO
2
1
Y
1
B
CB
PRO
535
B
CB
PRO
2
1
Y
1
B
CG
PRO
535
B
CG
PRO
2
1
Y
1
B
CD
PRO
535
B
CD
PRO
2
1
Y
1
B
CD
GLU
536
B
CD
GLU
3
1
Y
1
B
OE1
GLU
536
B
OE1
GLU
3
1
Y
1
B
OE2
GLU
536
B
OE2
GLU
3
1
Y
1
B
CG
ASP
555
B
CG
ASP
22
1
Y
1
B
OD1
ASP
555
B
OD1
ASP
22
1
Y
1
B
OD2
ASP
555
B
OD2
ASP
22
1
Y
1
B
CD
GLU
570
B
CD
GLU
37
1
Y
1
B
OE1
GLU
570
B
OE1
GLU
37
1
Y
1
B
OE2
GLU
570
B
OE2
GLU
37
1
Y
1
B
CG
GLU
577
B
CG
GLU
44
1
Y
1
B
CD
GLU
577
B
CD
GLU
44
1
Y
1
B
OE1
GLU
577
B
OE1
GLU
44
1
Y
1
B
OE2
GLU
577
B
OE2
GLU
44
1
Y
1
B
CG
GLU
587
B
CG
GLU
54
1
Y
1
B
CD
GLU
587
B
CD
GLU
54
1
Y
1
B
OE1
GLU
587
B
OE1
GLU
54
1
Y
1
B
OE2
GLU
587
B
OE2
GLU
54
1
Y
1
B
CD
GLU
615
B
CD
GLU
82
1
Y
1
B
OE1
GLU
615
B
OE1
GLU
82
1
Y
1
B
OE2
GLU
615
B
OE2
GLU
82
1
Y
1
A
MET
534
A
MET
1
1
Y
1
A
PRO
535
A
PRO
2
1
Y
1
A
HIS
635
A
HIS
102
1
Y
1
A
HIS
636
A
HIS
103
1
Y
1
A
HIS
637
A
HIS
104
1
Y
1
B
MET
534
B
MET
1
1
Y
87.940
27.3142
9.360
8.5994
-0.0000
-0.0000
-0.3794
-0.0000
-8.2200
0.2266
0.1800
0.1823
1.900
37.6250
1033
20081
20081
5.1400
97.3500
1.000
0.280
0.8469
0.2300
random
1
1.360
MOLECULAR REPLACEMENT
21.56
0.9000
1.1100
PDB ENTRY 1CDZ
ML
FLAT BULK SOLVENT MODEL
25.9680
0.3320
1.900
37.6250
182
1878
0
0
1696
0.006
1831
0.863
2498
0.068
242
0.004
337
16.095
662
0.2917
0.2060
1.9993
135
2328
2463
7
85.0000
0.2147
0.1896
2.1246
145
2655
2800
7
97.0000
0.2522
0.1774
2.2886
138
2754
2892
7
99.0000
0.2627
0.1893
2.5189
157
2749
2906
7
100.0000
0.2226
0.1936
2.8833
167
2771
2938
7
100.0000
0.2013
0.1634
3.6321
152
2828
2980
7
100.0000
0.2053
0.1711
37.6325
139
2963
3102
7
100.0000
1.900
50.000
3PC6
20146
20146
1
2.0
0.062
1.100
1
14.600
5.100
97.400
0.231
1.900
1.970
1668
1.178
1
3.500
82.800
0.217
1.970
2.050
1896
1.111
1
4.100
93.800
0.196
2.050
2.140
1997
1.151
1
4.900
98.200
0.162
2.140
2.250
2033
1.163
1
5.300
99.600
0.137
2.250
2.390
2038
1.069
1
5.600
99.900
0.104
2.390
2.580
2063
1.086
1
5.600
100.000
0.084
2.580
2.840
2042
1.008
1
5.600
100.000
0.061
2.840
3.250
2078
1.041
1
5.500
100.000
0.043
3.250
4.090
2104
1.137
1
5.400
99.900
0.034
4.090
50.000
2227
1.121
1
5.100
99.600
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.6_289
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
StructureStudio
data reduction
HKL-2000
phasing
PHASER
X-ray crystal structure of the second XRCC1 BRCT domain.
1
N
N
1
N
N
2
N
N
2
N
N
A
ASP
555
A
ASP
22
HELX_P
A
PHE
567
A
PHE
34
1
1
13
A
ASP
589
A
ASP
56
HELX_P
A
MET
597
A
MET
64
1
2
9
A
ARG
606
A
ARG
73
HELX_P
A
GLN
617
A
GLN
84
1
3
12
A
PRO
621
A
PRO
88
HELX_P
A
GLY
626
A
GLY
93
5
4
6
A
GLN
630
A
GLN
97
HELX_P
A
HIS
634
A
HIS
101
5
5
5
B
ASP
555
B
ASP
22
HELX_P
B
PHE
567
B
PHE
34
1
6
13
B
ASN
591
B
ASN
58
HELX_P
B
ASN
599
B
ASN
66
1
7
9
B
PRO
607
B
PRO
74
HELX_P
B
GLN
617
B
GLN
84
1
8
11
B
PRO
621
B
PRO
88
HELX_P
B
GLY
626
B
GLY
93
5
9
6
DNA BINDING PROTEIN
DNA repair, BRCT domain, Protein:protein interactions, DNA ligase III-alpha BRCT2 domain, DNA BINDING PROTEIN
XRCC1_MOUSE
UNP
1
535
Q60596
PELPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCN
EKQKLLPHQLYGVVPQA
535
631
3PC6
535
631
Q60596
A
1
2
98
535
631
3PC6
535
631
Q60596
B
1
2
98
1
initiating methionine
MET
534
3PC6
A
Q60596
UNP
1
1
expression tag
HIS
632
3PC6
A
Q60596
UNP
99
1
expression tag
HIS
633
3PC6
A
Q60596
UNP
100
1
expression tag
HIS
634
3PC6
A
Q60596
UNP
101
1
expression tag
HIS
635
3PC6
A
Q60596
UNP
102
1
expression tag
HIS
636
3PC6
A
Q60596
UNP
103
1
expression tag
HIS
637
3PC6
A
Q60596
UNP
104
2
initiating methionine
MET
534
3PC6
B
Q60596
UNP
1
2
expression tag
HIS
632
3PC6
B
Q60596
UNP
99
2
expression tag
HIS
633
3PC6
B
Q60596
UNP
100
2
expression tag
HIS
634
3PC6
B
Q60596
UNP
101
2
expression tag
HIS
635
3PC6
B
Q60596
UNP
102
2
expression tag
HIS
636
3PC6
B
Q60596
UNP
103
2
expression tag
HIS
637
3PC6
B
Q60596
UNP
104
4
4
parallel
parallel
parallel
parallel
parallel
parallel
A
GLU
570
A
GLU
37
A
LEU
571
A
LEU
38
A
HIS
545
A
HIS
12
A
TYR
549
A
TYR
16
A
PHE
581
A
PHE
48
A
THR
584
A
THR
51
A
ALA
603
A
ALA
70
A
VAL
605
A
VAL
72
B
GLU
570
B
GLU
37
B
LEU
571
B
LEU
38
B
HIS
545
B
HIS
12
B
TYR
549
B
TYR
16
B
PHE
581
B
PHE
48
B
THR
584
B
THR
51
B
ALA
603
B
ALA
70
B
VAL
605
B
VAL
72
19
P 21 21 21