0.014259
0.000000
0.000000
0.000000
0.014259
0.000000
0.000000
0.000000
0.016044
0.000000
0.000000
0.000000
Cuneo, M.J.
Krahn, J.M.
London, R.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
70.130
70.130
62.330
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
SE
N
238
N
C
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
39
7816
7827
10.1093/nar/gkr419
21652643
The structural basis for partitioning of the XRCC1/DNA ligase III-{alpha} BRCT-mediated dimer complexes.
2011
10.2210/pdb3pc7/pdb
pdb_00003pc7
100
1
IMAGE PLATE
2010-08-16
MAR scanner 345 mm plate
Si 111 crystal
MAD
M
x-ray
1
0.9793
1.0
0.9748
1.0
0.9795
1.0
22-ID
APS
0.9793, 0.9748, 0.9795
SYNCHROTRON
APS BEAMLINE 22-ID
10000.187
DNA ligase 3
6.5.1.1
unp residues 924-1009
C842S, C921S
2
man
polymer
18.015
water
171
nat
water
DNA ligase III, Polydeoxyribonucleotide synthase [ATP] 3
no
yes
GSADETLSQTKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFD(MSE)TSATHVLGSRDKNPAAQQVSPEWIW
ACIRKRRLVAPS
GSADETLSQTKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDKNPAAQQVSPEWIWACIR
KRRLVAPS
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
LIG3
9606
Homo sapiens
469008
Escherichia coli
BL21-DE3-RIL
Plasmid
pColaDuet
1
1.92
35.80
VAPOR DIFFUSION, HANGING DROP
6.5
25 % polyethylene glycol 3350, 0.1 M BisTris, 0.25 M ammonium acetate , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2011-06-15
1
1
2011-07-13
1
2
2011-11-02
1
3
2017-11-08
1
4
2023-09-06
1
5
2023-12-06
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
RCSB
Y
RCSB
2010-10-21
REL
REL
HOH
water
3PC6
PDB ENTRY 3PC6
PDB
experimental model
HOH
1001
2
HOH
HOH
1001
A
HOH
1002
2
HOH
HOH
1002
A
HOH
1003
2
HOH
HOH
1003
A
HOH
1004
2
HOH
HOH
1004
A
HOH
1005
2
HOH
HOH
1005
A
HOH
1006
2
HOH
HOH
1006
A
HOH
1007
2
HOH
HOH
1007
A
HOH
1008
2
HOH
HOH
1008
A
HOH
1009
2
HOH
HOH
1009
A
HOH
1010
2
HOH
HOH
1010
A
HOH
1011
2
HOH
HOH
1011
A
HOH
1012
2
HOH
HOH
1012
A
HOH
1013
2
HOH
HOH
1013
A
HOH
1014
2
HOH
HOH
1014
A
HOH
1015
2
HOH
HOH
1015
A
HOH
1016
2
HOH
HOH
1016
A
HOH
1017
2
HOH
HOH
1017
A
HOH
1018
2
HOH
HOH
1018
A
HOH
1019
2
HOH
HOH
1019
A
HOH
1020
2
HOH
HOH
1020
A
HOH
1021
2
HOH
HOH
1021
A
HOH
1022
2
HOH
HOH
1022
A
HOH
1023
2
HOH
HOH
1023
A
HOH
1024
2
HOH
HOH
1024
A
HOH
1025
2
HOH
HOH
1025
A
HOH
1026
2
HOH
HOH
1026
A
HOH
1027
2
HOH
HOH
1027
A
HOH
1028
2
HOH
HOH
1028
A
HOH
1029
2
HOH
HOH
1029
A
HOH
1030
2
HOH
HOH
1030
A
HOH
1031
2
HOH
HOH
1031
A
HOH
1032
2
HOH
HOH
1032
A
HOH
1033
2
HOH
HOH
1033
A
HOH
1034
2
HOH
HOH
1034
A
HOH
1035
2
HOH
HOH
1035
A
HOH
1036
2
HOH
HOH
1036
A
HOH
1037
2
HOH
HOH
1037
A
HOH
1038
2
HOH
HOH
1038
A
HOH
1039
2
HOH
HOH
1039
A
HOH
1040
2
HOH
HOH
1040
A
HOH
1041
2
HOH
HOH
1041
A
HOH
1042
2
HOH
HOH
1042
A
HOH
1043
2
HOH
HOH
1043
A
HOH
1044
2
HOH
HOH
1044
A
HOH
1045
2
HOH
HOH
1045
A
HOH
1046
2
HOH
HOH
1046
A
HOH
1047
2
HOH
HOH
1047
A
HOH
1048
2
HOH
HOH
1048
A
HOH
1049
2
HOH
HOH
1049
A
HOH
1050
2
HOH
HOH
1050
A
HOH
1051
2
HOH
HOH
1051
A
HOH
1052
2
HOH
HOH
1052
A
HOH
1053
2
HOH
HOH
1053
A
HOH
1054
2
HOH
HOH
1054
A
HOH
1055
2
HOH
HOH
1055
A
HOH
1056
2
HOH
HOH
1056
A
HOH
1057
2
HOH
HOH
1057
A
HOH
1058
2
HOH
HOH
1058
A
HOH
1059
2
HOH
HOH
1059
A
HOH
1060
2
HOH
HOH
1060
A
HOH
1061
2
HOH
HOH
1061
A
HOH
1062
2
HOH
HOH
1062
A
HOH
1063
2
HOH
HOH
1063
A
HOH
1064
2
HOH
HOH
1064
A
HOH
1065
2
HOH
HOH
1065
A
HOH
1066
2
HOH
HOH
1066
A
HOH
1067
2
HOH
HOH
1067
A
HOH
1068
2
HOH
HOH
1068
A
HOH
1069
2
HOH
HOH
1069
A
HOH
1070
2
HOH
HOH
1070
A
HOH
1071
2
HOH
HOH
1071
A
HOH
1073
2
HOH
HOH
1073
A
HOH
1074
2
HOH
HOH
1074
A
HOH
1075
2
HOH
HOH
1075
A
HOH
1076
2
HOH
HOH
1076
A
HOH
1077
2
HOH
HOH
1077
A
HOH
1078
2
HOH
HOH
1078
A
HOH
1079
2
HOH
HOH
1079
A
HOH
1080
2
HOH
HOH
1080
A
HOH
1081
2
HOH
HOH
1081
A
HOH
1082
2
HOH
HOH
1082
A
HOH
1083
2
HOH
HOH
1083
A
HOH
1084
2
HOH
HOH
1084
A
HOH
1085
2
HOH
HOH
1085
A
HOH
1086
2
HOH
HOH
1086
A
HOH
1087
2
HOH
HOH
1087
A
HOH
1088
2
HOH
HOH
1088
A
HOH
1089
2
HOH
HOH
1089
A
HOH
1092
2
HOH
HOH
1092
A
HOH
1093
2
HOH
HOH
1093
A
HOH
1094
2
HOH
HOH
1094
A
HOH
1095
2
HOH
HOH
1095
A
HOH
1001
2
HOH
HOH
1001
B
HOH
1002
2
HOH
HOH
1002
B
HOH
1003
2
HOH
HOH
1003
B
HOH
1004
2
HOH
HOH
1004
B
HOH
1005
2
HOH
HOH
1005
B
HOH
1006
2
HOH
HOH
1006
B
HOH
1007
2
HOH
HOH
1007
B
HOH
1008
2
HOH
HOH
1008
B
HOH
1009
2
HOH
HOH
1009
B
HOH
1010
2
HOH
HOH
1010
B
HOH
1011
2
HOH
HOH
1011
B
HOH
1012
2
HOH
HOH
1012
B
HOH
1013
2
HOH
HOH
1013
B
HOH
1014
2
HOH
HOH
1014
B
HOH
1015
2
HOH
HOH
1015
B
HOH
1016
2
HOH
HOH
1016
B
HOH
1017
2
HOH
HOH
1017
B
HOH
1018
2
HOH
HOH
1018
B
HOH
1019
2
HOH
HOH
1019
B
HOH
1020
2
HOH
HOH
1020
B
HOH
1021
2
HOH
HOH
1021
B
HOH
1022
2
HOH
HOH
1022
B
HOH
1023
2
HOH
HOH
1023
B
HOH
1024
2
HOH
HOH
1024
B
HOH
1025
2
HOH
HOH
1025
B
HOH
1026
2
HOH
HOH
1026
B
HOH
1027
2
HOH
HOH
1027
B
HOH
1028
2
HOH
HOH
1028
B
HOH
1029
2
HOH
HOH
1029
B
HOH
1030
2
HOH
HOH
1030
B
HOH
1031
2
HOH
HOH
1031
B
HOH
1032
2
HOH
HOH
1032
B
HOH
1033
2
HOH
HOH
1033
B
HOH
1034
2
HOH
HOH
1034
B
HOH
1035
2
HOH
HOH
1035
B
HOH
1036
2
HOH
HOH
1036
B
HOH
1037
2
HOH
HOH
1037
B
HOH
1038
2
HOH
HOH
1038
B
HOH
1039
2
HOH
HOH
1039
B
HOH
1040
2
HOH
HOH
1040
B
HOH
1041
2
HOH
HOH
1041
B
HOH
1042
2
HOH
HOH
1042
B
HOH
1043
2
HOH
HOH
1043
B
HOH
1044
2
HOH
HOH
1044
B
HOH
1045
2
HOH
HOH
1045
B
HOH
1046
2
HOH
HOH
1046
B
HOH
1047
2
HOH
HOH
1047
B
HOH
1048
2
HOH
HOH
1048
B
HOH
1049
2
HOH
HOH
1049
B
HOH
1050
2
HOH
HOH
1050
B
HOH
1051
2
HOH
HOH
1051
B
HOH
1052
2
HOH
HOH
1052
B
HOH
1053
2
HOH
HOH
1053
B
HOH
1054
2
HOH
HOH
1054
B
HOH
1055
2
HOH
HOH
1055
B
HOH
1056
2
HOH
HOH
1056
B
HOH
1057
2
HOH
HOH
1057
B
HOH
1058
2
HOH
HOH
1058
B
HOH
1059
2
HOH
HOH
1059
B
HOH
1060
2
HOH
HOH
1060
B
HOH
1061
2
HOH
HOH
1061
B
HOH
1062
2
HOH
HOH
1062
B
HOH
1063
2
HOH
HOH
1063
B
HOH
1064
2
HOH
HOH
1064
B
HOH
1065
2
HOH
HOH
1065
B
HOH
1066
2
HOH
HOH
1066
B
HOH
1067
2
HOH
HOH
1067
B
HOH
1068
2
HOH
HOH
1068
B
HOH
1069
2
HOH
HOH
1069
B
HOH
1070
2
HOH
HOH
1070
B
HOH
1071
2
HOH
HOH
1071
B
HOH
1072
2
HOH
HOH
1072
B
HOH
1073
2
HOH
HOH
1073
B
HOH
1074
2
HOH
HOH
1074
B
HOH
1075
2
HOH
HOH
1075
B
HOH
1076
2
HOH
HOH
1076
B
HOH
1077
2
HOH
HOH
1077
B
HOH
1090
2
HOH
HOH
1090
B
HOH
1091
2
HOH
HOH
1091
B
n
1
835
A
n
2
836
A
n
3
837
A
n
4
838
A
n
5
839
A
n
6
840
A
n
7
841
A
SER
842
n
8
SER
842
A
GLN
843
n
9
GLN
843
A
THR
844
n
10
THR
844
A
LYS
845
n
11
LYS
845
A
VAL
846
n
12
VAL
846
A
LEU
847
n
13
LEU
847
A
LEU
848
n
14
LEU
848
A
ASP
849
n
15
ASP
849
A
ILE
850
n
16
ILE
850
A
PHE
851
n
17
PHE
851
A
THR
852
n
18
THR
852
A
GLY
853
n
19
GLY
853
A
VAL
854
n
20
VAL
854
A
ARG
855
n
21
ARG
855
A
LEU
856
n
22
LEU
856
A
TYR
857
n
23
TYR
857
A
LEU
858
n
24
LEU
858
A
PRO
859
n
25
PRO
859
A
PRO
860
n
26
PRO
860
A
SER
861
n
27
SER
861
A
THR
862
n
28
THR
862
A
PRO
863
n
29
PRO
863
A
ASP
864
n
30
ASP
864
A
PHE
865
n
31
PHE
865
A
SER
866
n
32
SER
866
A
ARG
867
n
33
ARG
867
A
LEU
868
n
34
LEU
868
A
ARG
869
n
35
ARG
869
A
ARG
870
n
36
ARG
870
A
TYR
871
n
37
TYR
871
A
PHE
872
n
38
PHE
872
A
VAL
873
n
39
VAL
873
A
ALA
874
n
40
ALA
874
A
PHE
875
n
41
PHE
875
A
ASP
876
n
42
ASP
876
A
GLY
877
n
43
GLY
877
A
ASP
878
n
44
ASP
878
A
LEU
879
n
45
LEU
879
A
VAL
880
n
46
VAL
880
A
GLN
881
n
47
GLN
881
A
GLU
882
n
48
GLU
882
A
PHE
883
n
49
PHE
883
A
ASP
884
n
50
ASP
884
A
MSE
885
n
51
MSE
885
A
THR
886
n
52
THR
886
A
SER
887
n
53
SER
887
A
ALA
888
n
54
ALA
888
A
THR
889
n
55
THR
889
A
HIS
890
n
56
HIS
890
A
VAL
891
n
57
VAL
891
A
LEU
892
n
58
LEU
892
A
GLY
893
n
59
GLY
893
A
SER
894
n
60
SER
894
A
ARG
895
n
61
ARG
895
A
ASP
896
n
62
ASP
896
A
LYS
897
n
63
LYS
897
A
ASN
898
n
64
ASN
898
A
PRO
899
n
65
PRO
899
A
ALA
900
n
66
ALA
900
A
ALA
901
n
67
ALA
901
A
GLN
902
n
68
GLN
902
A
GLN
903
n
69
GLN
903
A
VAL
904
n
70
VAL
904
A
SER
905
n
71
SER
905
A
PRO
906
n
72
PRO
906
A
GLU
907
n
73
GLU
907
A
TRP
908
n
74
TRP
908
A
ILE
909
n
75
ILE
909
A
TRP
910
n
76
TRP
910
A
ALA
911
n
77
ALA
911
A
CYS
912
n
78
CYS
912
A
ILE
913
n
79
ILE
913
A
ARG
914
n
80
ARG
914
A
LYS
915
n
81
LYS
915
A
ARG
916
n
82
ARG
916
A
ARG
917
n
83
ARG
917
A
LEU
918
n
84
LEU
918
A
VAL
919
n
85
VAL
919
A
ALA
920
n
86
ALA
920
A
PRO
921
n
87
PRO
921
A
SER
922
n
88
SER
922
A
n
1
835
B
n
2
836
B
n
3
837
B
n
4
838
B
n
5
839
B
n
6
840
B
n
7
841
B
n
8
842
B
n
9
843
B
n
10
844
B
n
11
845
B
VAL
846
n
12
VAL
846
B
LEU
847
n
13
LEU
847
B
LEU
848
n
14
LEU
848
B
ASP
849
n
15
ASP
849
B
ILE
850
n
16
ILE
850
B
PHE
851
n
17
PHE
851
B
THR
852
n
18
THR
852
B
GLY
853
n
19
GLY
853
B
VAL
854
n
20
VAL
854
B
ARG
855
n
21
ARG
855
B
LEU
856
n
22
LEU
856
B
TYR
857
n
23
TYR
857
B
LEU
858
n
24
LEU
858
B
PRO
859
n
25
PRO
859
B
PRO
860
n
26
PRO
860
B
SER
861
n
27
SER
861
B
THR
862
n
28
THR
862
B
PRO
863
n
29
PRO
863
B
ASP
864
n
30
ASP
864
B
PHE
865
n
31
PHE
865
B
SER
866
n
32
SER
866
B
ARG
867
n
33
ARG
867
B
LEU
868
n
34
LEU
868
B
ARG
869
n
35
ARG
869
B
ARG
870
n
36
ARG
870
B
TYR
871
n
37
TYR
871
B
PHE
872
n
38
PHE
872
B
VAL
873
n
39
VAL
873
B
ALA
874
n
40
ALA
874
B
PHE
875
n
41
PHE
875
B
ASP
876
n
42
ASP
876
B
GLY
877
n
43
GLY
877
B
ASP
878
n
44
ASP
878
B
LEU
879
n
45
LEU
879
B
VAL
880
n
46
VAL
880
B
GLN
881
n
47
GLN
881
B
GLU
882
n
48
GLU
882
B
PHE
883
n
49
PHE
883
B
ASP
884
n
50
ASP
884
B
MSE
885
n
51
MSE
885
B
THR
886
n
52
THR
886
B
SER
887
n
53
SER
887
B
ALA
888
n
54
ALA
888
B
THR
889
n
55
THR
889
B
HIS
890
n
56
HIS
890
B
VAL
891
n
57
VAL
891
B
LEU
892
n
58
LEU
892
B
GLY
893
n
59
GLY
893
B
SER
894
n
60
SER
894
B
ARG
895
n
61
ARG
895
B
ASP
896
n
62
ASP
896
B
LYS
897
n
63
LYS
897
B
ASN
898
n
64
ASN
898
B
PRO
899
n
65
PRO
899
B
ALA
900
n
66
ALA
900
B
ALA
901
n
67
ALA
901
B
GLN
902
n
68
GLN
902
B
GLN
903
n
69
GLN
903
B
VAL
904
n
70
VAL
904
B
SER
905
n
71
SER
905
B
PRO
906
n
72
PRO
906
B
GLU
907
n
73
GLU
907
B
TRP
908
n
74
TRP
908
B
ILE
909
n
75
ILE
909
B
TRP
910
n
76
TRP
910
B
ALA
911
n
77
ALA
911
B
CYS
912
n
78
CYS
912
B
ILE
913
n
79
ILE
913
B
ARG
914
n
80
ARG
914
B
LYS
915
n
81
LYS
915
B
ARG
916
n
82
ARG
916
B
ARG
917
n
83
ARG
917
B
LEU
918
n
84
LEU
918
B
VAL
919
n
85
VAL
919
B
ALA
920
n
86
ALA
920
B
PRO
921
n
87
PRO
921
B
SER
922
n
88
SER
922
B
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
A
MSE
885
SELENOMETHIONINE
A
MSE
51
MET
B
MSE
885
SELENOMETHIONINE
B
MSE
51
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
856
A
N
LEU
22
A
O
ASP
878
A
O
ASP
44
A
N
VAL
891
A
N
VAL
57
A
O
VAL
904
A
O
VAL
70
B
N
LEU
856
B
N
LEU
22
B
O
ASP
878
B
O
ASP
44
B
N
VAL
891
B
N
VAL
57
B
O
GLN
902
B
O
GLN
68
1
B
HOH
1056
D
HOH
1
A
CG
GLN
843
A
CG
GLN
9
1
Y
1
A
CD
GLN
843
A
CD
GLN
9
1
Y
1
A
OE1
GLN
843
A
OE1
GLN
9
1
Y
1
A
NE2
GLN
843
A
NE2
GLN
9
1
Y
1
B
NE
ARG
855
B
NE
ARG
21
1
Y
1
B
CZ
ARG
855
B
CZ
ARG
21
1
Y
1
B
NH1
ARG
855
B
NH1
ARG
21
1
Y
1
B
NH2
ARG
855
B
NH2
ARG
21
1
Y
1
B
CG
GLN
881
B
CG
GLN
47
1
Y
1
B
CD
GLN
881
B
CD
GLN
47
1
Y
1
B
OE1
GLN
881
B
OE1
GLN
47
1
Y
1
B
NE2
GLN
881
B
NE2
GLN
47
1
Y
1
B
CG
GLU
882
B
CG
GLU
48
1
Y
1
B
CD
GLU
882
B
CD
GLU
48
1
Y
1
B
OE1
GLU
882
B
OE1
GLU
48
1
Y
1
B
OE2
GLU
882
B
OE2
GLU
48
1
Y
1
B
CG
ASP
884
B
CG
ASP
50
1
Y
1
B
OD1
ASP
884
B
OD1
ASP
50
1
Y
1
B
OD2
ASP
884
B
OD2
ASP
50
1
Y
1
A
GLY
835
A
GLY
1
1
Y
1
A
SER
836
A
SER
2
1
Y
1
A
ALA
837
A
ALA
3
1
Y
1
A
ASP
838
A
ASP
4
1
Y
1
A
GLU
839
A
GLU
5
1
Y
1
A
THR
840
A
THR
6
1
Y
1
A
LEU
841
A
LEU
7
1
Y
1
B
GLY
835
B
GLY
1
1
Y
1
B
SER
836
B
SER
2
1
Y
1
B
ALA
837
B
ALA
3
1
Y
1
B
ASP
838
B
ASP
4
1
Y
1
B
GLU
839
B
GLU
5
1
Y
1
B
THR
840
B
THR
6
1
Y
1
B
LEU
841
B
LEU
7
1
Y
1
B
SER
842
B
SER
8
1
Y
1
B
GLN
843
B
GLN
9
1
Y
1
B
THR
844
B
THR
10
1
Y
1
B
LYS
845
B
LYS
11
1
Y
1
A
ASP
876
83.40
20.56
1
A
ASN
898
-164.82
77.27
1
A
ASN
898
-164.82
76.94
1
B
PHE
875
-97.60
31.67
1
B
ASP
876
86.52
17.27
1
B
ASN
898
-150.98
73.43
84.280
29.3610
12.950
0.0337
0.0000
-0.0000
0.0337
-0.0000
-0.0674
0.1981
0.1401
0.1430
1.650
46.5890
1808
35544
19117
5.0900
99.3000
1.000
0.270
0.8969
0.1600
random
1
0.950
MOLECULAR REPLACEMENT
16.95
0.9000
1.1100
PDB ENTRY 3PC6
ML
FLAT BULK SOLVENT MODEL
46.0650
0.3380
1.650
46.5890
171
1431
0
0
1260
0.008
1355
1.099
1858
0.078
206
0.006
243
12.024
498
0.2081
0.1426
1.6936
142
2586
2728
13
100.0000
0.2104
0.1379
1.7435
136
2643
2779
13
100.0000
0.2228
0.1235
1.7998
152
2584
2736
13
100.0000
0.1860
0.1160
1.8641
143
2593
2736
13
100.0000
0.1778
0.1171
1.9387
129
2640
2769
13
100.0000
0.2059
0.1167
2.0270
147
2589
2736
13
100.0000
0.1844
0.1135
2.1338
161
2612
2773
13
100.0000
0.2040
0.1179
2.2675
159
2566
2725
13
100.0000
0.2288
0.1254
2.4426
117
2622
2739
13
100.0000
0.2080
0.1439
2.6884
134
2619
2753
13
99.0000
0.2157
0.1520
3.0773
135
2580
2715
13
99.0000
0.1646
0.1387
3.8768
141
2556
2697
13
98.0000
0.2024
0.1543
46.6072
112
2546
2658
13
96.0000
1.650
50.000
3PC7
19139
19139
1
2.0
0.069
0.921
1
10.700
9.300
98.900
0.422
1.650
1.710
1892
0.854
1
8.800
100.000
0.313
1.710
1.780
1878
0.870
1
9.600
99.900
0.211
1.780
1.860
1895
0.868
1
9.600
99.800
0.153
1.860
1.960
1903
0.911
1
9.600
99.800
0.114
1.960
2.080
1887
0.985
1
9.500
99.600
0.090
2.080
2.240
1914
1.028
1
9.500
99.400
0.078
2.240
2.460
1903
0.973
1
9.600
99.400
0.064
2.460
2.820
1923
0.837
1
9.600
98.800
0.064
2.820
3.550
1934
1.023
1
9.100
97.800
0.055
3.550
50.000
2010
0.851
1
7.900
95.200
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.6_289
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
MAR345dtb
data reduction
HKL-2000
phasing
PHASER
X-ray crystal structure of the DNA ligase III-alpha BRCT domain.
1
N
N
1
N
N
2
N
N
2
N
N
A
ASP
864
A
ASP
30
HELX_P
A
PHE
875
A
PHE
41
1
1
12
A
GLN
881
A
GLN
47
HELX_P
A
ALA
888
A
ALA
54
5
2
8
A
SER
905
A
SER
71
HELX_P
A
ARG
916
A
ARG
82
1
3
12
B
ASP
864
B
ASP
30
HELX_P
B
PHE
875
B
PHE
41
1
4
12
B
GLN
881
B
GLN
47
HELX_P
B
ALA
888
B
ALA
54
5
5
8
B
SER
905
B
SER
71
HELX_P
B
ARG
916
B
ARG
82
1
6
12
covale
1.327
both
A
A
ASP
884
A
C
ASP
50
1_555
A
MSE
885
A
N
MSE
51
1_555
covale
1.330
both
B
A
ASP
884
A
C
ASP
50
1_555
A
MSE
885
A
N
MSE
51
1_555
covale
1.330
both
A
A
MSE
885
A
C
MSE
51
1_555
A
THR
886
A
N
THR
52
1_555
covale
1.328
both
B
A
MSE
885
A
C
MSE
51
1_555
A
THR
886
A
N
THR
52
1_555
covale
1.331
both
B
ASP
884
B
C
ASP
50
1_555
B
MSE
885
B
N
MSE
51
1_555
covale
1.330
both
B
MSE
885
B
C
MSE
51
1_555
B
THR
886
B
N
THR
52
1_555
LIGASE
DNA repair, BRCT domain, Protein:protein interactions, XRCC1 BRCT2 domain, DNA BINDING PROTEIN, LIGASE
DNLI3_HUMAN
UNP
1
924
P49916
ADETLCQTKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDKNPAAQQVSPEWIWACIRKR
RLVAPC
924
1009
3PC7
837
922
P49916
A
1
3
88
924
1009
3PC7
837
922
P49916
B
1
3
88
1
expression tag
GLY
835
3PC7
A
P49916
UNP
1
1
expression tag
SER
836
3PC7
A
P49916
UNP
2
1
CYS
engineered mutation
SER
842
3PC7
A
P49916
UNP
929
8
1
CYS
engineered mutation
SER
922
3PC7
A
P49916
UNP
1009
88
2
expression tag
GLY
835
3PC7
B
P49916
UNP
1
2
expression tag
SER
836
3PC7
B
P49916
UNP
2
2
CYS
engineered mutation
SER
842
3PC7
B
P49916
UNP
929
8
2
CYS
engineered mutation
SER
922
3PC7
B
P49916
UNP
1009
88
2
2
2
2
parallel
parallel
parallel
parallel
A
ARG
855
A
ARG
21
A
LEU
856
A
LEU
22
A
ASP
878
A
ASP
44
A
LEU
879
A
LEU
45
A
HIS
890
A
HIS
56
A
LEU
892
A
LEU
58
A
GLN
902
A
GLN
68
A
VAL
904
A
VAL
70
B
ARG
855
B
ARG
21
B
LEU
856
B
LEU
22
B
ASP
878
B
ASP
44
B
LEU
879
B
LEU
45
B
HIS
890
B
HIS
56
B
VAL
891
B
VAL
57
B
GLN
902
B
GLN
68
B
GLN
903
B
GLN
69
96
P 43 21 2