0.022216 0.000000 0.000000 0.000000 0.022216 0.000000 0.000000 0.000000 0.008815 0.00000 0.00000 0.00000 Lobsanov, Y.D. Broom, A. Howell, P.L. Rose, D.R. Meiering, E.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 45.012 45.012 113.439 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C8 H19 N O5 209.240 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL BIS-TRIS BUFFER non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N O N 76 N C N 77 N C N 78 N O N 79 N C N 80 N O N 81 N N N 82 N C N 83 N C N 84 N O N 85 N C N 86 N C N 87 N O N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 S C N 109 N C N 110 N O N 111 N C N 112 N C N 113 N C N 114 N O N 115 N N N 116 N O N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 S C N 129 N C N 130 N O N 131 N C N 132 N C N 133 N C N 134 N O N 135 N O N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 N C N 148 N C N 149 N O N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N C N 157 N O N 158 N C N 159 N O N 160 N C N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C Y 175 N C Y 176 N N Y 177 N C Y 178 N C Y 179 N N N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N O N 192 N H N 193 N H N 194 N N N 195 S C N 196 N C N 197 N O N 198 S C N 199 N C N 200 N C N 201 N C N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N C N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N N N 239 S C N 240 N C N 241 N O N 242 N C N 243 N C N 244 N C N 245 N C N 246 N N N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N N N 264 S C N 265 N C N 266 N O N 267 N C N 268 N C N 269 N S N 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N NA N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N C N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C N 306 N O N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 R C N 320 N O N 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N N N 333 S C N 334 N C N 335 N O N 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N N Y 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N C N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C Y 369 N C N 370 N O N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C N 388 N C N 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing Y 172 N sing Y 173 N doub Y 174 N doub N 175 N sing Y 176 N sing N 177 N sing Y 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N sing Y 335 N doub N 336 N sing Y 337 N doub N 338 N sing Y 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing Y 354 N doub Y 355 N sing Y 356 N sing N 357 N sing Y 358 N doub N 359 N sing Y 360 N doub N 361 N sing Y 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing UK Structure STRUE6 2005 0969-2126 20 161 171 10.1016/j.str.2011.10.021 22178248 Modular evolution and the origins of symmetry: reconstruction of a three-fold symmetric globular protein. 2012 10.2210/pdb3pg0/pdb pdb_00003pg0 100 1 mirrors IMAGE PLATE 2010-03-22 RIGAKU RAXIS IV++ mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH3R symmetric design, engineered module 18061.398 ThreeFoil 1 man polymer 209.240 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 3 syn non-polymer 92.094 GLYCEROL 2 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 115 nat water no no GSSHHHHHHHHHHSSGLVPRGSHMGDGYYKLVARHSGKALDVENASTSDGANVIQYSYSGGDNQQWRLVDLGDGYYKLVA RHSGKALDVENASTSDGANVIQYSYSGGDNQQWRLVDLGDGYYKLVARHSGKALDVENASTSDGANVIQYSYSGGDNQQW RLVDL GSSHHHHHHHHHHSSGLVPRGSHMGDGYYKLVARHSGKALDVENASTSDGANVIQYSYSGGDNQQWRLVDLGDGYYKLVA RHSGKALDVENASTSDGANVIQYSYSGGDNQQWRLVDLGDGYYKLVARHSGKALDVENASTSDGANVIQYSYSGGDNQQW RLVDL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n formed inclusion bodies sample 32630 Artificial gene 469008 Escherichia coli BL21(DE3) plasmid pET28a 1 1.59 22.67 VAPOR DIFFUSION, SITTING DROP 6.5 2.0 M ammonium sulfate, 0.1 M bis-tris, protein concentration = 7 mg/mL, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Refinement description Data collection Database references Derived calculations Refinement description 1 0 2011-12-21 1 1 2012-02-01 1 2 2017-11-08 1 3 2023-09-06 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2010-10-29 REL REL BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL GOL GLYCEROL NA SODIUM ION HOH water 1KNM PDB ENTRY 1KNM PDB experimental model BTB 1 2 BTB BTB 142 A BTB 1 2 BTB BTB 143 A BTB 1 2 BTB BTB 144 A GOL 1 3 GOL GOL 145 A GOL 1 3 GOL GOL 146 A NA 1 4 NA NA 147 A HOH 1 5 HOH HOH 148 A HOH 2 5 HOH HOH 149 A HOH 3 5 HOH HOH 150 A HOH 4 5 HOH HOH 151 A HOH 5 5 HOH HOH 152 A HOH 6 5 HOH HOH 153 A HOH 7 5 HOH HOH 154 A HOH 8 5 HOH HOH 155 A HOH 9 5 HOH HOH 156 A HOH 10 5 HOH HOH 157 A HOH 11 5 HOH HOH 158 A HOH 12 5 HOH HOH 159 A HOH 13 5 HOH HOH 160 A HOH 14 5 HOH HOH 161 A HOH 15 5 HOH HOH 162 A HOH 16 5 HOH HOH 163 A HOH 17 5 HOH HOH 164 A HOH 18 5 HOH HOH 165 A HOH 19 5 HOH HOH 166 A HOH 20 5 HOH HOH 167 A HOH 21 5 HOH HOH 168 A HOH 22 5 HOH HOH 169 A HOH 23 5 HOH HOH 170 A HOH 24 5 HOH HOH 171 A HOH 25 5 HOH HOH 172 A HOH 26 5 HOH HOH 173 A HOH 27 5 HOH HOH 174 A HOH 28 5 HOH HOH 175 A HOH 29 5 HOH HOH 176 A HOH 30 5 HOH HOH 177 A HOH 31 5 HOH HOH 178 A HOH 32 5 HOH HOH 179 A HOH 33 5 HOH HOH 180 A HOH 34 5 HOH HOH 181 A HOH 35 5 HOH HOH 182 A HOH 36 5 HOH HOH 183 A HOH 37 5 HOH HOH 184 A HOH 38 5 HOH HOH 185 A HOH 39 5 HOH HOH 186 A HOH 40 5 HOH HOH 187 A HOH 41 5 HOH HOH 188 A HOH 42 5 HOH HOH 189 A HOH 43 5 HOH HOH 190 A HOH 44 5 HOH HOH 191 A HOH 45 5 HOH HOH 192 A HOH 46 5 HOH HOH 193 A HOH 47 5 HOH HOH 194 A HOH 48 5 HOH HOH 195 A HOH 49 5 HOH HOH 196 A HOH 50 5 HOH HOH 197 A HOH 51 5 HOH HOH 198 A HOH 52 5 HOH HOH 199 A HOH 53 5 HOH HOH 200 A HOH 54 5 HOH HOH 201 A HOH 55 5 HOH HOH 202 A HOH 56 5 HOH HOH 203 A HOH 57 5 HOH HOH 204 A HOH 58 5 HOH HOH 205 A HOH 59 5 HOH HOH 206 A HOH 60 5 HOH HOH 207 A HOH 61 5 HOH HOH 208 A HOH 62 5 HOH HOH 209 A HOH 63 5 HOH HOH 210 A HOH 64 5 HOH HOH 211 A HOH 65 5 HOH HOH 212 A HOH 66 5 HOH HOH 213 A HOH 67 5 HOH HOH 214 A HOH 68 5 HOH HOH 215 A HOH 69 5 HOH HOH 216 A HOH 70 5 HOH HOH 217 A HOH 71 5 HOH HOH 218 A HOH 72 5 HOH HOH 219 A HOH 73 5 HOH HOH 220 A HOH 74 5 HOH HOH 221 A HOH 75 5 HOH HOH 222 A HOH 76 5 HOH HOH 223 A HOH 77 5 HOH HOH 224 A HOH 78 5 HOH HOH 225 A HOH 79 5 HOH HOH 226 A HOH 80 5 HOH HOH 227 A HOH 81 5 HOH HOH 228 A HOH 82 5 HOH HOH 229 A HOH 83 5 HOH HOH 230 A HOH 84 5 HOH HOH 231 A HOH 85 5 HOH HOH 232 A HOH 86 5 HOH HOH 233 A HOH 87 5 HOH HOH 234 A HOH 88 5 HOH HOH 235 A HOH 89 5 HOH HOH 236 A HOH 90 5 HOH HOH 237 A HOH 91 5 HOH HOH 238 A HOH 92 5 HOH HOH 239 A HOH 93 5 HOH HOH 240 A HOH 94 5 HOH HOH 241 A HOH 95 5 HOH HOH 242 A HOH 96 5 HOH HOH 243 A HOH 97 5 HOH HOH 244 A HOH 98 5 HOH HOH 245 A HOH 99 5 HOH HOH 246 A HOH 100 5 HOH HOH 247 A HOH 101 5 HOH HOH 248 A HOH 102 5 HOH HOH 249 A HOH 103 5 HOH HOH 250 A HOH 104 5 HOH HOH 251 A HOH 105 5 HOH HOH 252 A HOH 106 5 HOH HOH 253 A HOH 107 5 HOH HOH 254 A HOH 108 5 HOH HOH 255 A HOH 109 5 HOH HOH 256 A HOH 110 5 HOH HOH 257 A HOH 111 5 HOH HOH 258 A HOH 112 5 HOH HOH 259 A HOH 113 5 HOH HOH 260 A HOH 114 5 HOH HOH 261 A HOH 115 5 HOH HOH 262 A n 1 -23 A n 2 -22 A n 3 -21 A n 4 -20 A n 5 -19 A n 6 -18 A n 7 -17 A n 8 -16 A n 9 -15 A n 10 -14 A n 11 -13 A n 12 -12 A n 13 -11 A n 14 -10 A n 15 -9 A n 16 -8 A n 17 -7 A n 18 -6 A n 19 -5 A n 20 -4 A n 21 -3 A n 22 -2 A n 23 -1 A n 24 0 A n 25 1 A ASP 2 n 26 ASP 2 A GLY 3 n 27 GLY 3 A TYR 4 n 28 TYR 4 A TYR 5 n 29 TYR 5 A LYS 6 n 30 LYS 6 A LEU 7 n 31 LEU 7 A VAL 8 n 32 VAL 8 A ALA 9 n 33 ALA 9 A ARG 10 n 34 ARG 10 A HIS 11 n 35 HIS 11 A SER 12 n 36 SER 12 A GLY 13 n 37 GLY 13 A LYS 14 n 38 LYS 14 A ALA 15 n 39 ALA 15 A LEU 16 n 40 LEU 16 A ASP 17 n 41 ASP 17 A VAL 18 n 42 VAL 18 A GLU 19 n 43 GLU 19 A ASN 20 n 44 ASN 20 A ALA 21 n 45 ALA 21 A SER 22 n 46 SER 22 A THR 23 n 47 THR 23 A SER 24 n 48 SER 24 A ASP 25 n 49 ASP 25 A GLY 26 n 50 GLY 26 A ALA 27 n 51 ALA 27 A ASN 28 n 52 ASN 28 A VAL 29 n 53 VAL 29 A ILE 30 n 54 ILE 30 A GLN 31 n 55 GLN 31 A TYR 32 n 56 TYR 32 A SER 33 n 57 SER 33 A TYR 34 n 58 TYR 34 A SER 35 n 59 SER 35 A GLY 36 n 60 GLY 36 A GLY 37 n 61 GLY 37 A ASP 38 n 62 ASP 38 A ASN 39 n 63 ASN 39 A GLN 40 n 64 GLN 40 A GLN 41 n 65 GLN 41 A TRP 42 n 66 TRP 42 A ARG 43 n 67 ARG 43 A LEU 44 n 68 LEU 44 A VAL 45 n 69 VAL 45 A ASP 46 n 70 ASP 46 A LEU 47 n 71 LEU 47 A GLY 48 n 72 GLY 48 A ASP 49 n 73 ASP 49 A GLY 50 n 74 GLY 50 A TYR 51 n 75 TYR 51 A TYR 52 n 76 TYR 52 A LYS 53 n 77 LYS 53 A LEU 54 n 78 LEU 54 A VAL 55 n 79 VAL 55 A ALA 56 n 80 ALA 56 A ARG 57 n 81 ARG 57 A HIS 58 n 82 HIS 58 A SER 59 n 83 SER 59 A GLY 60 n 84 GLY 60 A LYS 61 n 85 LYS 61 A ALA 62 n 86 ALA 62 A LEU 63 n 87 LEU 63 A ASP 64 n 88 ASP 64 A VAL 65 n 89 VAL 65 A GLU 66 n 90 GLU 66 A ASN 67 n 91 ASN 67 A ALA 68 n 92 ALA 68 A SER 69 n 93 SER 69 A THR 70 n 94 THR 70 A SER 71 n 95 SER 71 A ASP 72 n 96 ASP 72 A GLY 73 n 97 GLY 73 A ALA 74 n 98 ALA 74 A ASN 75 n 99 ASN 75 A VAL 76 n 100 VAL 76 A ILE 77 n 101 ILE 77 A GLN 78 n 102 GLN 78 A TYR 79 n 103 TYR 79 A SER 80 n 104 SER 80 A TYR 81 n 105 TYR 81 A SER 82 n 106 SER 82 A GLY 83 n 107 GLY 83 A GLY 84 n 108 GLY 84 A ASP 85 n 109 ASP 85 A ASN 86 n 110 ASN 86 A GLN 87 n 111 GLN 87 A GLN 88 n 112 GLN 88 A TRP 89 n 113 TRP 89 A ARG 90 n 114 ARG 90 A LEU 91 n 115 LEU 91 A VAL 92 n 116 VAL 92 A ASP 93 n 117 ASP 93 A LEU 94 n 118 LEU 94 A GLY 95 n 119 GLY 95 A ASP 96 n 120 ASP 96 A GLY 97 n 121 GLY 97 A TYR 98 n 122 TYR 98 A TYR 99 n 123 TYR 99 A LYS 100 n 124 LYS 100 A LEU 101 n 125 LEU 101 A VAL 102 n 126 VAL 102 A ALA 103 n 127 ALA 103 A ARG 104 n 128 ARG 104 A HIS 105 n 129 HIS 105 A SER 106 n 130 SER 106 A GLY 107 n 131 GLY 107 A LYS 108 n 132 LYS 108 A ALA 109 n 133 ALA 109 A LEU 110 n 134 LEU 110 A ASP 111 n 135 ASP 111 A VAL 112 n 136 VAL 112 A GLU 113 n 137 GLU 113 A ASN 114 n 138 ASN 114 A ALA 115 n 139 ALA 115 A SER 116 n 140 SER 116 A THR 117 n 141 THR 117 A SER 118 n 142 SER 118 A ASP 119 n 143 ASP 119 A GLY 120 n 144 GLY 120 A ALA 121 n 145 ALA 121 A ASN 122 n 146 ASN 122 A VAL 123 n 147 VAL 123 A ILE 124 n 148 ILE 124 A GLN 125 n 149 GLN 125 A TYR 126 n 150 TYR 126 A SER 127 n 151 SER 127 A TYR 128 n 152 TYR 128 A SER 129 n 153 SER 129 A GLY 130 n 154 GLY 130 A GLY 131 n 155 GLY 131 A ASP 132 n 156 ASP 132 A ASN 133 n 157 ASN 133 A GLN 134 n 158 GLN 134 A GLN 135 n 159 GLN 135 A TRP 136 n 160 TRP 136 A ARG 137 n 161 ARG 137 A LEU 138 n 162 LEU 138 A VAL 139 n 163 VAL 139 A ASP 140 n 164 ASP 140 A LEU 141 n 165 LEU 141 A 3.6408 0.1579 -0.6551 0.8867 -1.1046 4.9430 -0.2010 0.2149 0.1077 -0.0659 -0.0899 0.0608 0.4150 0.2384 0.2700 0.1116 0.0142 -0.0208 0.2591 -0.0251 0.0665 refined 22.7140 -8.3927 -2.5334 X-RAY DIFFRACTION 0.3030 0.1052 -0.0178 0.0716 -0.0080 0.1017 -0.0492 0.0075 0.0186 -0.0088 -0.0018 -0.0127 -0.0211 0.0329 0.0252 0.0733 -0.0038 -0.0140 0.0794 0.0052 0.0816 refined 15.1133 -4.3501 6.8016 X-RAY DIFFRACTION 0.0216 0.0349 0.0413 0.3306 0.0677 0.1253 -0.0361 0.0392 -0.0231 -0.0125 0.0204 0.0640 0.0249 -0.0804 0.0124 0.0709 -0.0263 0.0136 0.1273 -0.0103 0.1150 refined 20.7118 -9.3330 2.8813 X-RAY DIFFRACTION 0.1227 0.0175 0.0535 0.4165 0.2166 0.3869 0.0213 -0.0093 0.0146 -0.1182 -0.1053 0.0332 0.0001 -0.1405 0.0685 0.1261 0.0026 -0.0094 0.1371 -0.0149 0.1007 refined 17.5892 -19.2264 -1.7556 X-RAY DIFFRACTION 0.5612 -0.4013 -0.0155 0.3143 -0.0505 0.2674 -0.0287 -0.0541 -0.1264 0.0502 0.0253 0.0778 0.0413 0.0410 0.0021 0.0863 0.0061 0.0057 0.0759 0.0078 0.0877 refined 10.7048 -18.5224 8.9354 X-RAY DIFFRACTION 0.3141 0.3125 0.0683 0.6340 0.3269 0.2361 0.0437 0.0261 -0.0322 -0.0361 -0.0782 0.0188 -0.0534 0.0215 0.0311 0.1232 0.0036 -0.0194 0.1318 -0.0047 0.1277 refined 8.4045 -13.3920 -9.6128 X-RAY DIFFRACTION 1.0885 -0.1587 0.2676 0.0379 0.0010 0.2119 0.0848 0.1595 -0.1828 -0.0408 0.0036 0.0012 -0.0143 -0.0138 -0.0523 0.0828 0.0122 0.0138 0.1074 -0.0168 0.1206 refined 8.2272 -13.7974 -5.2484 X-RAY DIFFRACTION 0.7557 -0.1280 0.1492 0.3664 -0.1062 0.1155 -0.0380 0.0726 -0.0859 0.0185 0.0239 0.0477 -0.0146 0.0167 0.0054 0.0634 -0.0045 -0.0034 0.0761 0.0013 0.0585 refined 3.0924 -8.1115 2.2640 X-RAY DIFFRACTION 0.3540 -0.6069 0.1217 1.7001 0.7110 1.3259 -0.0458 -0.1777 0.0485 -0.1492 0.3628 -0.0996 -0.0886 0.2444 -0.3105 0.0665 -0.0454 0.0188 0.1888 -0.0065 0.1377 refined 18.6743 -6.2790 -6.1500 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 (chain A and resid 2:6) X-RAY DIFFRACTION 2 (chain A and resid 7:39) X-RAY DIFFRACTION 3 (chain A and resid 40:43) X-RAY DIFFRACTION 4 (chain A and resid 44:57) X-RAY DIFFRACTION 5 (chain A and resid 58:89) X-RAY DIFFRACTION 6 (chain A and resid 90:96) X-RAY DIFFRACTION 7 (chain A and resid 97:104) X-RAY DIFFRACTION 8 (chain A and resid 105:136) X-RAY DIFFRACTION 9 (chain A and resid 137:141) author_and_software_defined_assembly PISA 1 monomeric A ASN 28 A OD1 ASN 52 1_555 A NA 147 G NA NA 1_555 A VAL 29 A O VAL 53 1_555 93.3 A ASN 28 A OD1 ASN 52 1_555 A NA 147 G NA NA 1_555 A ASN 75 A OD1 ASN 99 1_555 83.5 A VAL 29 A O VAL 53 1_555 A NA 147 G NA NA 1_555 A ASN 75 A OD1 ASN 99 1_555 170.8 A ASN 28 A OD1 ASN 52 1_555 A NA 147 G NA NA 1_555 A VAL 76 A O VAL 100 1_555 81.2 A VAL 29 A O VAL 53 1_555 A NA 147 G NA NA 1_555 A VAL 76 A O VAL 100 1_555 95.9 A ASN 75 A OD1 ASN 99 1_555 A NA 147 G NA NA 1_555 A VAL 76 A O VAL 100 1_555 92.2 A ASN 28 A OD1 ASN 52 1_555 A NA 147 G NA NA 1_555 A ASN 122 A OD1 ASN 146 1_555 86.5 A VAL 29 A O VAL 53 1_555 A NA 147 G NA NA 1_555 A ASN 122 A OD1 ASN 146 1_555 85.4 A ASN 75 A OD1 ASN 99 1_555 A NA 147 G NA NA 1_555 A ASN 122 A OD1 ASN 146 1_555 85.8 A VAL 76 A O VAL 100 1_555 A NA 147 G NA NA 1_555 A ASN 122 A OD1 ASN 146 1_555 167.8 A ASN 28 A OD1 ASN 52 1_555 A NA 147 G NA NA 1_555 A VAL 123 A O VAL 147 1_555 169.9 A VAL 29 A O VAL 53 1_555 A NA 147 G NA NA 1_555 A VAL 123 A O VAL 147 1_555 96.8 A ASN 75 A OD1 ASN 99 1_555 A NA 147 G NA NA 1_555 A VAL 123 A O VAL 147 1_555 86.4 A VAL 76 A O VAL 100 1_555 A NA 147 G NA NA 1_555 A VAL 123 A O VAL 147 1_555 98.1 A ASN 122 A OD1 ASN 146 1_555 A NA 147 G NA NA 1_555 A VAL 123 A O VAL 147 1_555 93.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 5 A N TYR 29 A O TRP 42 A O TRP 66 A N LEU 47 A N LEU 71 A O TYR 51 A O TYR 75 A N TYR 52 A N TYR 76 A O TRP 89 A O TRP 113 A N ARG 90 A N ARG 114 A O VAL 102 A O VAL 126 A N TYR 99 A N TYR 123 A O TRP 136 A O TRP 160 A O ARG 137 A O ARG 161 A N VAL 8 A N VAL 32 A N ASP 17 A N ASP 41 A O ILE 30 A O ILE 54 A N ASP 64 A N ASP 88 A O ILE 77 A O ILE 101 A N ASP 111 A N ASP 135 A O ILE 124 A O ILE 148 1 A HOH 156 H HOH 1 A HOH 251 H HOH 1 A CZ ARG 43 A CZ ARG 67 1 Y 1 A NH1 ARG 43 A NH1 ARG 67 1 Y 1 A NH2 ARG 43 A NH2 ARG 67 1 Y 1 A GLY -23 A GLY 1 1 Y 1 A SER -22 A SER 2 1 Y 1 A SER -21 A SER 3 1 Y 1 A HIS -20 A HIS 4 1 Y 1 A HIS -19 A HIS 5 1 Y 1 A HIS -18 A HIS 6 1 Y 1 A HIS -17 A HIS 7 1 Y 1 A HIS -16 A HIS 8 1 Y 1 A HIS -15 A HIS 9 1 Y 1 A HIS -14 A HIS 10 1 Y 1 A HIS -13 A HIS 11 1 Y 1 A HIS -12 A HIS 12 1 Y 1 A HIS -11 A HIS 13 1 Y 1 A SER -10 A SER 14 1 Y 1 A SER -9 A SER 15 1 Y 1 A GLY -8 A GLY 16 1 Y 1 A LEU -7 A LEU 17 1 Y 1 A VAL -6 A VAL 18 1 Y 1 A PRO -5 A PRO 19 1 Y 1 A ARG -4 A ARG 20 1 Y 1 A GLY -3 A GLY 21 1 Y 1 A SER -2 A SER 22 1 Y 1 A HIS -1 A HIS 23 1 Y 1 A MET 0 A MET 24 1 Y 1 A GLY 1 A GLY 25 1 Y 1 A ASN 114 58.50 17.64 -1.4738 -0.0000 -0.0000 -1.4738 0.0000 2.9475 0.1843 0.1660 0.1673 1.620 35.258 1086 15497 15504 7.00 99.52 1.000 0.230 0.21 1 1.37 MOLECULAR REPLACEMENT 15.22 0.49 0.80 PDB ENTRY 1KNM ML FLAT BULK SOLVENT MODEL 35.856 0.421 1.620 35.258 115 1247 55 0 1077 0.006 1235 1.074 1677 21.086 496 0.074 166 0.004 219 0.3405 0.3527 1.6937 128 1700 97.00 0.2901 0.2300 1.7830 133 1771 100.00 0.1954 0.1506 1.8947 134 1776 100.00 0.1699 0.1451 2.0410 133 1775 100.00 0.1922 0.1626 2.2464 135 1786 100.00 0.1899 0.1594 2.5714 136 1801 100.00 0.1711 0.1551 3.2393 138 1846 100.00 0.1527 0.1526 35.2668 149 1963 100.00 1.620 35.260 3PG0 15533 15533 0.0 0.0 0.068 1 13.700 6.250 99.500 0.363 1.620 1.680 3.5 1 4.290 96.000 0.317 1.680 1.750 4.4 1 6.280 100.000 0.245 1.750 1.820 5.9 1 6.440 100.000 0.199 1.820 1.920 7.3 1 6.490 100.000 0.153 1.920 2.040 9.5 1 6.480 100.000 0.113 2.040 2.200 11.9 1 6.590 99.900 0.081 2.200 2.420 16.1 1 6.530 99.900 0.072 2.420 2.770 18.0 1 6.590 99.600 0.058 2.770 3.490 21.5 1 6.570 99.900 0.038 3.490 35.260 32.8 1 6.180 99.900 data scaling Jim W. Pflugrath Jim.Pflugrath@Rigaku.com Dec 10 2009 http://www.rigaku.com/software/dtrek.html d*TREK package 9.9.8.6D refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.6.4_486 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data collection CrystalClear data reduction d*TREK phasing BALBES phasing MOLREP Crystal structure of designed 3-fold symmetric protein, ThreeFoil 1 N N 2 N N 2 N N 2 N N 3 N N 3 N N 4 N N 5 N N A ASN 20 A ASN 44 HELX_P A SER 22 A SER 46 5 1 3 A GLY 37 A GLY 61 HELX_P A GLN 40 A GLN 64 5 2 4 A ASN 67 A ASN 91 HELX_P A SER 69 A SER 93 5 3 3 A GLY 84 A GLY 108 HELX_P A GLN 87 A GLN 111 5 4 4 A ASN 114 A ASN 138 HELX_P A SER 116 A SER 140 5 5 3 A GLY 131 A GLY 155 HELX_P A GLN 134 A GLN 158 5 6 4 metalc 2.491 A ASN 28 A OD1 ASN 52 1_555 A NA 147 G NA NA 1_555 metalc 2.537 A VAL 29 A O VAL 53 1_555 A NA 147 G NA NA 1_555 metalc 2.494 A ASN 75 A OD1 ASN 99 1_555 A NA 147 G NA NA 1_555 metalc 2.484 A VAL 76 A O VAL 100 1_555 A NA 147 G NA NA 1_555 metalc 2.429 A ASN 122 A OD1 ASN 146 1_555 A NA 147 G NA NA 1_555 metalc 2.491 A VAL 123 A O VAL 147 1_555 A NA 147 G NA NA 1_555 DE NOVO PROTEIN symmetric design, Beta-trefoil, engineered module, sugar binding, DE NOVO PROTEIN 3PG0 PDB 1 3PG0 HHHHHHGDGYYKLVARHSGKALDVENASTSDGANVIQYSYSGGDNQQWRLVDLGDGYYKLVARHSGKALDVENASTSDGA NVIQYSYSGGDNQQWRLVDLGDGYYKLVARHSGKALDVENASTSDGANVIQYSYSGGDNQQWRLVDL -23 141 3PG0 -23 141 3PG0 A 1 1 165 7 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 4 A TYR 28 A ALA 9 A ALA 33 A TRP 42 A TRP 66 A GLY 48 A GLY 72 A TYR 51 A TYR 75 A ALA 56 A ALA 80 A TRP 89 A TRP 113 A ASP 93 A ASP 117 A TYR 99 A TYR 123 A ALA 103 A ALA 127 A TRP 136 A TRP 160 A ASP 140 A ASP 164 A TYR 4 A TYR 28 A ALA 9 A ALA 33 A ALA 15 A ALA 39 A VAL 18 A VAL 42 A VAL 29 A VAL 53 A TYR 32 A TYR 56 A ALA 62 A ALA 86 A VAL 65 A VAL 89 A VAL 76 A VAL 100 A TYR 79 A TYR 103 A ALA 109 A ALA 133 A VAL 112 A VAL 136 A VAL 123 A VAL 147 A TYR 126 A TYR 150 BINDING SITE FOR RESIDUE BTB A 142 A BTB 142 Software 13 BINDING SITE FOR RESIDUE BTB A 143 A BTB 143 Software 12 BINDING SITE FOR RESIDUE BTB A 144 A BTB 144 Software 9 BINDING SITE FOR RESIDUE GOL A 145 A GOL 145 Software 9 BINDING SITE FOR RESIDUE GOL A 146 A GOL 146 Software 5 BINDING SITE FOR RESIDUE NA A 147 A NA 147 Software 6 A ASP 111 A ASP 135 13 1_555 A VAL 112 A VAL 136 13 1_555 A GLU 113 A GLU 137 13 1_555 A ASN 114 A ASN 138 13 1_555 A TYR 126 A TYR 150 13 1_555 A SER 129 A SER 153 13 7_555 A GLY 131 A GLY 155 13 7_555 A ASN 133 A ASN 157 13 1_555 A GLN 134 A GLN 158 13 1_555 A HOH 151 H HOH 13 1_555 A HOH 202 H HOH 13 7_555 A HOH 208 H HOH 13 1_555 A HOH 226 H HOH 13 1_555 A ASP 64 A ASP 88 12 1_555 A VAL 65 A VAL 89 12 1_555 A GLU 66 A GLU 90 12 1_555 A ASN 67 A ASN 91 12 1_555 A TYR 79 A TYR 103 12 1_555 A ASN 86 A ASN 110 12 1_555 A GLN 87 A GLN 111 12 1_555 A ASP 93 A ASP 117 12 4_545 A LEU 94 A LEU 118 12 4_545 A HOH 187 H HOH 12 1_555 A HOH 201 H HOH 12 1_555 A HOH 250 H HOH 12 1_555 A ASP 17 A ASP 41 9 1_555 A VAL 18 A VAL 42 9 1_555 A GLU 19 A GLU 43 9 1_555 A ASN 20 A ASN 44 9 1_555 A TYR 32 A TYR 56 9 1_555 A SER 35 A SER 59 9 1_555 A ASN 39 A ASN 63 9 1_555 A GLN 40 A GLN 64 9 1_555 A HOH 239 H HOH 9 6_545 A ARG 43 A ARG 67 9 1_555 A LEU 44 A LEU 68 9 7_645 A VAL 45 A VAL 69 9 7_645 A VAL 45 A VAL 69 9 1_555 A ASP 46 A ASP 70 9 7_645 A LYS 53 A LYS 77 9 1_555 A HOH 182 H HOH 9 1_555 A HOH 228 H HOH 9 1_555 A HOH 257 H HOH 9 1_555 A ARG 10 A ARG 34 5 1_555 A TYR 98 A TYR 122 5 1_555 A SER 116 A SER 140 5 7_555 A SER 118 A SER 142 5 7_555 A ASP 132 A ASP 156 5 1_555 A ASN 28 A ASN 52 6 1_555 A VAL 29 A VAL 53 6 1_555 A ASN 75 A ASN 99 6 1_555 A VAL 76 A VAL 100 6 1_555 A ASN 122 A ASN 146 6 1_555 A VAL 123 A VAL 147 6 1_555 96 P 43 21 2