0.022227
0.000000
0.002970
0.000000
0.020665
0.000000
0.000000
0.000000
0.008202
0.00000
0.00000
0.00000
Cheng, W.C.
Lin, S.C.
Wang, W.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
97.61
90.00
44.990
48.391
123.002
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C21 H30 N7 O17 P3
745.421
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C7 H10 O5
174.151
(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID
SHIKIMATE
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
S
P
N
251
N
O
N
252
N
O
N
253
N
O
N
254
N
C
N
255
R
C
N
256
N
O
N
257
R
C
N
258
N
O
N
259
R
C
N
260
N
O
N
261
R
C
Y
262
N
N
Y
263
N
C
Y
264
N
N
Y
265
N
C
Y
266
N
C
N
267
N
N
Y
268
N
N
Y
269
N
C
Y
270
N
N
Y
271
N
C
N
272
N
O
N
273
S
P
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
C
N
278
R
C
N
279
N
O
N
280
S
C
N
281
N
O
N
282
R
C
N
283
N
O
N
284
R
C
N
285
N
N
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
O
N
290
N
N
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
P
N
295
N
O
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
O
N
383
S
C
N
384
R
C
N
385
N
O
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
O
N
390
N
O
N
391
N
C
N
392
R
C
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
R
C
N
409
N
O
N
410
N
C
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
N
432
N
O
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
N
N
446
S
C
N
447
N
C
N
448
N
O
N
449
N
C
N
450
N
C
N
451
N
C
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
Y
260
N
sing
Y
261
N
sing
Y
262
N
doub
N
263
N
sing
Y
264
N
sing
Y
265
N
sing
Y
266
N
doub
N
267
N
sing
Y
268
N
doub
N
269
N
sing
N
270
N
sing
Y
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
Y
421
N
doub
Y
422
N
sing
Y
423
N
sing
N
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
doub
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
To be Published
0353
Shikimate 5-Dehydrogenase (aroE) from Helicobacter pylori in complex with Shikimate and NADPH
10.2210/pdb3phi/pdb
pdb_00003phi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
CCD
2008-11-01
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
0.9762
1.0
BL13C1
NSRRC
0.9762
SYNCHROTRON
NSRRC BEAMLINE BL13C1
30138.961
Shikimate dehydrogenase
1.1.1.25
2
man
polymer
174.151
(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID
2
syn
non-polymer
745.421
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2
syn
non-polymer
18.015
water
165
nat
water
no
no
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIK
GIALECGAVNTLVLENDELVGYNTDALGFYLSLKQKNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRL
GCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTPFLSLAKELKTPFQDGKDMLIYQAAL
SFEKFSASQIPYSKAFEVMRSVFHHHHHH
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIK
GIALECGAVNTLVLENDELVGYNTDALGFYLSLKQKNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRL
GCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTPFLSLAKELKTPFQDGKDMLIYQAAL
SFEKFSASQIPYSKAFEVMRSVFHHHHHH
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Campylobacter pylori
26695
sample
aroE, HP_1249
85962
Helicobacter pylori
562
Escherichia coli
BL21(DE3)
PLASMID
pET28a
1
2.20
44.13
VAPOR DIFFUSION, HANGING DROP
6.0
25% PEG 8000, 0.1M BIS-TRIS, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-11-09
1
1
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The apo form of the same protein
The same protein complexed with shikimate
The same protein complexed with 3-Dehydroshikimate
RCSB
Y
PDBJ
2010-11-04
REL
REL
SKM
(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID
NDP
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
HOH
water
3PHG
PDB ENTRY 3PHG
PDB
experimental model
SKM
500
2
SKM
SKM
500
A
NDP
1411
3
NDP
NDP
1411
A
SKM
500
2
SKM
SKM
500
B
NDP
1411
3
NDP
NDP
1411
B
HOH
1
4
HOH
HOH
270
A
HOH
2
4
HOH
HOH
271
A
HOH
3
4
HOH
HOH
272
A
HOH
5
4
HOH
HOH
273
A
HOH
6
4
HOH
HOH
274
A
HOH
7
4
HOH
HOH
275
A
HOH
10
4
HOH
HOH
276
A
HOH
12
4
HOH
HOH
277
A
HOH
13
4
HOH
HOH
278
A
HOH
16
4
HOH
HOH
279
A
HOH
22
4
HOH
HOH
280
A
HOH
23
4
HOH
HOH
281
A
HOH
25
4
HOH
HOH
282
A
HOH
26
4
HOH
HOH
283
A
HOH
27
4
HOH
HOH
284
A
HOH
29
4
HOH
HOH
285
A
HOH
30
4
HOH
HOH
286
A
HOH
32
4
HOH
HOH
287
A
HOH
34
4
HOH
HOH
288
A
HOH
35
4
HOH
HOH
289
A
HOH
39
4
HOH
HOH
290
A
HOH
41
4
HOH
HOH
291
A
HOH
42
4
HOH
HOH
292
A
HOH
46
4
HOH
HOH
293
A
HOH
47
4
HOH
HOH
294
A
HOH
51
4
HOH
HOH
295
A
HOH
59
4
HOH
HOH
296
A
HOH
61
4
HOH
HOH
297
A
HOH
62
4
HOH
HOH
298
A
HOH
63
4
HOH
HOH
299
A
HOH
64
4
HOH
HOH
300
A
HOH
65
4
HOH
HOH
301
A
HOH
66
4
HOH
HOH
302
A
HOH
67
4
HOH
HOH
303
A
HOH
69
4
HOH
HOH
304
A
HOH
71
4
HOH
HOH
305
A
HOH
72
4
HOH
HOH
306
A
HOH
73
4
HOH
HOH
307
A
HOH
74
4
HOH
HOH
308
A
HOH
75
4
HOH
HOH
309
A
HOH
78
4
HOH
HOH
310
A
HOH
79
4
HOH
HOH
311
A
HOH
83
4
HOH
HOH
312
A
HOH
84
4
HOH
HOH
313
A
HOH
85
4
HOH
HOH
314
A
HOH
86
4
HOH
HOH
315
A
HOH
87
4
HOH
HOH
316
A
HOH
88
4
HOH
HOH
317
A
HOH
89
4
HOH
HOH
318
A
HOH
91
4
HOH
HOH
319
A
HOH
92
4
HOH
HOH
320
A
HOH
96
4
HOH
HOH
321
A
HOH
97
4
HOH
HOH
322
A
HOH
98
4
HOH
HOH
323
A
HOH
100
4
HOH
HOH
324
A
HOH
101
4
HOH
HOH
325
A
HOH
103
4
HOH
HOH
326
A
HOH
105
4
HOH
HOH
327
A
HOH
106
4
HOH
HOH
328
A
HOH
107
4
HOH
HOH
329
A
HOH
110
4
HOH
HOH
330
A
HOH
111
4
HOH
HOH
331
A
HOH
112
4
HOH
HOH
332
A
HOH
113
4
HOH
HOH
333
A
HOH
114
4
HOH
HOH
334
A
HOH
118
4
HOH
HOH
335
A
HOH
119
4
HOH
HOH
336
A
HOH
121
4
HOH
HOH
337
A
HOH
123
4
HOH
HOH
338
A
HOH
125
4
HOH
HOH
339
A
HOH
129
4
HOH
HOH
340
A
HOH
130
4
HOH
HOH
341
A
HOH
132
4
HOH
HOH
342
A
HOH
136
4
HOH
HOH
343
A
HOH
137
4
HOH
HOH
344
A
HOH
140
4
HOH
HOH
345
A
HOH
141
4
HOH
HOH
346
A
HOH
143
4
HOH
HOH
347
A
HOH
144
4
HOH
HOH
348
A
HOH
145
4
HOH
HOH
349
A
HOH
146
4
HOH
HOH
350
A
HOH
147
4
HOH
HOH
351
A
HOH
148
4
HOH
HOH
352
A
HOH
149
4
HOH
HOH
353
A
HOH
152
4
HOH
HOH
354
A
HOH
153
4
HOH
HOH
355
A
HOH
155
4
HOH
HOH
356
A
HOH
157
4
HOH
HOH
357
A
HOH
158
4
HOH
HOH
358
A
HOH
159
4
HOH
HOH
359
A
HOH
160
4
HOH
HOH
360
A
HOH
164
4
HOH
HOH
361
A
HOH
4
4
HOH
HOH
270
B
HOH
8
4
HOH
HOH
271
B
HOH
9
4
HOH
HOH
272
B
HOH
11
4
HOH
HOH
273
B
HOH
14
4
HOH
HOH
274
B
HOH
15
4
HOH
HOH
275
B
HOH
17
4
HOH
HOH
276
B
HOH
18
4
HOH
HOH
277
B
HOH
19
4
HOH
HOH
278
B
HOH
20
4
HOH
HOH
279
B
HOH
21
4
HOH
HOH
280
B
HOH
24
4
HOH
HOH
281
B
HOH
28
4
HOH
HOH
282
B
HOH
31
4
HOH
HOH
283
B
HOH
33
4
HOH
HOH
284
B
HOH
36
4
HOH
HOH
285
B
HOH
37
4
HOH
HOH
286
B
HOH
38
4
HOH
HOH
287
B
HOH
40
4
HOH
HOH
288
B
HOH
43
4
HOH
HOH
289
B
HOH
44
4
HOH
HOH
290
B
HOH
45
4
HOH
HOH
291
B
HOH
48
4
HOH
HOH
292
B
HOH
49
4
HOH
HOH
293
B
HOH
50
4
HOH
HOH
294
B
HOH
52
4
HOH
HOH
295
B
HOH
53
4
HOH
HOH
296
B
HOH
54
4
HOH
HOH
297
B
HOH
55
4
HOH
HOH
298
B
HOH
56
4
HOH
HOH
299
B
HOH
57
4
HOH
HOH
300
B
HOH
58
4
HOH
HOH
301
B
HOH
60
4
HOH
HOH
302
B
HOH
68
4
HOH
HOH
303
B
HOH
70
4
HOH
HOH
304
B
HOH
76
4
HOH
HOH
305
B
HOH
77
4
HOH
HOH
306
B
HOH
80
4
HOH
HOH
307
B
HOH
81
4
HOH
HOH
308
B
HOH
82
4
HOH
HOH
309
B
HOH
90
4
HOH
HOH
310
B
HOH
93
4
HOH
HOH
311
B
HOH
94
4
HOH
HOH
312
B
HOH
95
4
HOH
HOH
313
B
HOH
99
4
HOH
HOH
314
B
HOH
102
4
HOH
HOH
315
B
HOH
104
4
HOH
HOH
316
B
HOH
108
4
HOH
HOH
317
B
HOH
109
4
HOH
HOH
318
B
HOH
115
4
HOH
HOH
319
B
HOH
116
4
HOH
HOH
320
B
HOH
117
4
HOH
HOH
321
B
HOH
120
4
HOH
HOH
322
B
HOH
122
4
HOH
HOH
323
B
HOH
124
4
HOH
HOH
324
B
HOH
126
4
HOH
HOH
325
B
HOH
127
4
HOH
HOH
326
B
HOH
128
4
HOH
HOH
327
B
HOH
131
4
HOH
HOH
328
B
HOH
133
4
HOH
HOH
329
B
HOH
134
4
HOH
HOH
330
B
HOH
135
4
HOH
HOH
331
B
HOH
138
4
HOH
HOH
332
B
HOH
139
4
HOH
HOH
333
B
HOH
142
4
HOH
HOH
334
B
HOH
150
4
HOH
HOH
335
B
HOH
151
4
HOH
HOH
336
B
HOH
154
4
HOH
HOH
337
B
HOH
156
4
HOH
HOH
338
B
HOH
161
4
HOH
HOH
339
B
HOH
162
4
HOH
HOH
340
B
HOH
163
4
HOH
HOH
341
B
HOH
165
4
HOH
HOH
342
B
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
LEU
3
n
3
LEU
3
A
LYS
4
n
4
LYS
4
A
SER
5
n
5
SER
5
A
PHE
6
n
6
PHE
6
A
GLY
7
n
7
GLY
7
A
VAL
8
n
8
VAL
8
A
PHE
9
n
9
PHE
9
A
GLY
10
n
10
GLY
10
A
ASN
11
n
11
ASN
11
A
PRO
12
n
12
PRO
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
HIS
15
n
15
HIS
15
A
SER
16
n
16
SER
16
A
LYS
17
n
17
LYS
17
A
SER
18
n
18
SER
18
A
PRO
19
n
19
PRO
19
A
LEU
20
n
20
LEU
20
A
ILE
21
n
21
ILE
21
A
HIS
22
n
22
HIS
22
A
ASN
23
n
23
ASN
23
A
ALA
24
n
24
ALA
24
A
CYS
25
n
25
CYS
25
A
PHE
26
n
26
PHE
26
A
LEU
27
n
27
LEU
27
A
THR
28
n
28
THR
28
A
PHE
29
n
29
PHE
29
A
GLN
30
n
30
GLN
30
A
LYS
31
n
31
LYS
31
A
GLU
32
n
32
GLU
32
A
LEU
33
n
33
LEU
33
A
ARG
34
n
34
ARG
34
A
PHE
35
n
35
PHE
35
A
LEU
36
n
36
LEU
36
A
GLY
37
n
37
GLY
37
A
HIS
38
n
38
HIS
38
A
TYR
39
n
39
TYR
39
A
HIS
40
n
40
HIS
40
A
PRO
41
n
41
PRO
41
A
ILE
42
n
42
ILE
42
A
LEU
43
n
43
LEU
43
A
LEU
44
n
44
LEU
44
A
PRO
45
n
45
PRO
45
A
LEU
46
n
46
LEU
46
A
GLU
47
n
47
GLU
47
A
SER
48
n
48
SER
48
A
HIS
49
n
49
HIS
49
A
ILE
50
n
50
ILE
50
A
LYS
51
n
51
LYS
51
A
SER
52
n
52
SER
52
A
GLU
53
n
53
GLU
53
A
PHE
54
n
54
PHE
54
A
LEU
55
n
55
LEU
55
A
HIS
56
n
56
HIS
56
A
LEU
57
n
57
LEU
57
A
GLY
58
n
58
GLY
58
A
LEU
59
n
59
LEU
59
A
SER
60
n
60
SER
60
A
GLY
61
n
61
GLY
61
A
ALA
62
n
62
ALA
62
A
ASN
63
n
63
ASN
63
A
VAL
64
n
64
VAL
64
A
THR
65
n
65
THR
65
A
LEU
66
n
66
LEU
66
A
PRO
67
n
67
PRO
67
A
PHE
68
n
68
PHE
68
A
LYS
69
n
69
LYS
69
A
GLU
70
n
70
GLU
70
A
ARG
71
n
71
ARG
71
A
ALA
72
n
72
ALA
72
A
PHE
73
n
73
PHE
73
A
GLN
74
n
74
GLN
74
A
VAL
75
n
75
VAL
75
A
CYS
76
n
76
CYS
76
A
ASP
77
n
77
ASP
77
A
LYS
78
n
78
LYS
78
A
ILE
79
n
79
ILE
79
A
LYS
80
n
80
LYS
80
A
GLY
81
n
81
GLY
81
A
ILE
82
n
82
ILE
82
A
ALA
83
n
83
ALA
83
A
LEU
84
n
84
LEU
84
A
GLU
85
n
85
GLU
85
A
CYS
86
n
86
CYS
86
A
GLY
87
n
87
GLY
87
A
ALA
88
n
88
ALA
88
A
VAL
89
n
89
VAL
89
A
ASN
90
n
90
ASN
90
A
THR
91
n
91
THR
91
A
LEU
92
n
92
LEU
92
A
VAL
93
n
93
VAL
93
A
LEU
94
n
94
LEU
94
A
GLU
95
n
95
GLU
95
A
ASN
96
n
96
ASN
96
A
ASP
97
n
97
ASP
97
A
GLU
98
n
98
GLU
98
A
LEU
99
n
99
LEU
99
A
VAL
100
n
100
VAL
100
A
GLY
101
n
101
GLY
101
A
TYR
102
n
102
TYR
102
A
ASN
103
n
103
ASN
103
A
THR
104
n
104
THR
104
A
ASP
105
n
105
ASP
105
A
ALA
106
n
106
ALA
106
A
LEU
107
n
107
LEU
107
A
GLY
108
n
108
GLY
108
A
PHE
109
n
109
PHE
109
A
TYR
110
n
110
TYR
110
A
LEU
111
n
111
LEU
111
A
SER
112
n
112
SER
112
A
LEU
113
n
113
LEU
113
A
LYS
114
n
114
LYS
114
A
n
115
115
A
n
116
116
A
n
117
117
A
TYR
118
n
118
TYR
118
A
GLN
119
n
119
GLN
119
A
ASN
120
n
120
ASN
120
A
ALA
121
n
121
ALA
121
A
LEU
122
n
122
LEU
122
A
ILE
123
n
123
ILE
123
A
LEU
124
n
124
LEU
124
A
GLY
125
n
125
GLY
125
A
ALA
126
n
126
ALA
126
A
GLY
127
n
127
GLY
127
A
GLY
128
n
128
GLY
128
A
SER
129
n
129
SER
129
A
ALA
130
n
130
ALA
130
A
LYS
131
n
131
LYS
131
A
ALA
132
n
132
ALA
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
CYS
135
n
135
CYS
135
A
GLU
136
n
136
GLU
136
A
LEU
137
n
137
LEU
137
A
LYS
138
n
138
LYS
138
A
LYS
139
n
139
LYS
139
A
GLN
140
n
140
GLN
140
A
GLY
141
n
141
GLY
141
A
LEU
142
n
142
LEU
142
A
GLN
143
n
143
GLN
143
A
VAL
144
n
144
VAL
144
A
SER
145
n
145
SER
145
A
VAL
146
n
146
VAL
146
A
LEU
147
n
147
LEU
147
A
ASN
148
n
148
ASN
148
A
ARG
149
n
149
ARG
149
A
SER
150
n
150
SER
150
A
SER
151
n
151
SER
151
A
ARG
152
n
152
ARG
152
A
GLY
153
n
153
GLY
153
A
LEU
154
n
154
LEU
154
A
ASP
155
n
155
ASP
155
A
PHE
156
n
156
PHE
156
A
PHE
157
n
157
PHE
157
A
GLN
158
n
158
GLN
158
A
ARG
159
n
159
ARG
159
A
LEU
160
n
160
LEU
160
A
GLY
161
n
161
GLY
161
A
CYS
162
n
162
CYS
162
A
ASP
163
n
163
ASP
163
A
CYS
164
n
164
CYS
164
A
PHE
165
n
165
PHE
165
A
MET
166
n
166
MET
166
A
GLU
167
n
167
GLU
167
A
PRO
168
n
168
PRO
168
A
PRO
169
n
169
PRO
169
A
LYS
170
n
170
LYS
170
A
SER
171
n
171
SER
171
A
ALA
172
n
172
ALA
172
A
PHE
173
n
173
PHE
173
A
ASP
174
n
174
ASP
174
A
LEU
175
n
175
LEU
175
A
ILE
176
n
176
ILE
176
A
ILE
177
n
177
ILE
177
A
ASN
178
n
178
ASN
178
A
ALA
179
n
179
ALA
179
A
THR
180
n
180
THR
180
A
SER
181
n
181
SER
181
A
ALA
182
n
182
ALA
182
A
SER
183
n
183
SER
183
A
LEU
184
n
184
LEU
184
A
HIS
185
n
185
HIS
185
A
ASN
186
n
186
ASN
186
A
GLU
187
n
187
GLU
187
A
LEU
188
n
188
LEU
188
A
PRO
189
n
189
PRO
189
A
LEU
190
n
190
LEU
190
A
ASN
191
n
191
ASN
191
A
LYS
192
n
192
LYS
192
A
GLU
193
n
193
GLU
193
A
VAL
194
n
194
VAL
194
A
LEU
195
n
195
LEU
195
A
LYS
196
n
196
LYS
196
A
GLY
197
n
197
GLY
197
A
TYR
198
n
198
TYR
198
A
PHE
199
n
199
PHE
199
A
LYS
200
n
200
LYS
200
A
GLU
201
n
201
GLU
201
A
GLY
202
n
202
GLY
202
A
LYS
203
n
203
LYS
203
A
LEU
204
n
204
LEU
204
A
ALA
205
n
205
ALA
205
A
TYR
206
n
206
TYR
206
A
ASP
207
n
207
ASP
207
A
LEU
208
n
208
LEU
208
A
ALA
209
n
209
ALA
209
A
TYR
210
n
210
TYR
210
A
GLY
211
n
211
GLY
211
A
PHE
212
n
212
PHE
212
A
LEU
213
n
213
LEU
213
A
THR
214
n
214
THR
214
A
PRO
215
n
215
PRO
215
A
PHE
216
n
216
PHE
216
A
LEU
217
n
217
LEU
217
A
SER
218
n
218
SER
218
A
LEU
219
n
219
LEU
219
A
ALA
220
n
220
ALA
220
A
LYS
221
n
221
LYS
221
A
GLU
222
n
222
GLU
222
A
LEU
223
n
223
LEU
223
A
LYS
224
n
224
LYS
224
A
THR
225
n
225
THR
225
A
PRO
226
n
226
PRO
226
A
PHE
227
n
227
PHE
227
A
GLN
228
n
228
GLN
228
A
ASP
229
n
229
ASP
229
A
GLY
230
n
230
GLY
230
A
LYS
231
n
231
LYS
231
A
ASP
232
n
232
ASP
232
A
MET
233
n
233
MET
233
A
LEU
234
n
234
LEU
234
A
ILE
235
n
235
ILE
235
A
TYR
236
n
236
TYR
236
A
GLN
237
n
237
GLN
237
A
ALA
238
n
238
ALA
238
A
ALA
239
n
239
ALA
239
A
LEU
240
n
240
LEU
240
A
SER
241
n
241
SER
241
A
PHE
242
n
242
PHE
242
A
GLU
243
n
243
GLU
243
A
LYS
244
n
244
LYS
244
A
PHE
245
n
245
PHE
245
A
SER
246
n
246
SER
246
A
ALA
247
n
247
ALA
247
A
SER
248
n
248
SER
248
A
GLN
249
n
249
GLN
249
A
ILE
250
n
250
ILE
250
A
PRO
251
n
251
PRO
251
A
TYR
252
n
252
TYR
252
A
SER
253
n
253
SER
253
A
LYS
254
n
254
LYS
254
A
ALA
255
n
255
ALA
255
A
PHE
256
n
256
PHE
256
A
GLU
257
n
257
GLU
257
A
VAL
258
n
258
VAL
258
A
MET
259
n
259
MET
259
A
ARG
260
n
260
ARG
260
A
SER
261
n
261
SER
261
A
VAL
262
n
262
VAL
262
A
n
263
263
A
n
264
264
A
n
265
265
A
n
266
266
A
n
267
267
A
n
268
268
A
n
269
269
A
MET
1
n
1
MET
1
B
LYS
2
n
2
LYS
2
B
LEU
3
n
3
LEU
3
B
LYS
4
n
4
LYS
4
B
SER
5
n
5
SER
5
B
PHE
6
n
6
PHE
6
B
GLY
7
n
7
GLY
7
B
VAL
8
n
8
VAL
8
B
PHE
9
n
9
PHE
9
B
GLY
10
n
10
GLY
10
B
ASN
11
n
11
ASN
11
B
PRO
12
n
12
PRO
12
B
ILE
13
n
13
ILE
13
B
LYS
14
n
14
LYS
14
B
HIS
15
n
15
HIS
15
B
SER
16
n
16
SER
16
B
LYS
17
n
17
LYS
17
B
SER
18
n
18
SER
18
B
PRO
19
n
19
PRO
19
B
LEU
20
n
20
LEU
20
B
ILE
21
n
21
ILE
21
B
HIS
22
n
22
HIS
22
B
ASN
23
n
23
ASN
23
B
ALA
24
n
24
ALA
24
B
CYS
25
n
25
CYS
25
B
PHE
26
n
26
PHE
26
B
LEU
27
n
27
LEU
27
B
THR
28
n
28
THR
28
B
PHE
29
n
29
PHE
29
B
GLN
30
n
30
GLN
30
B
LYS
31
n
31
LYS
31
B
GLU
32
n
32
GLU
32
B
LEU
33
n
33
LEU
33
B
ARG
34
n
34
ARG
34
B
PHE
35
n
35
PHE
35
B
LEU
36
n
36
LEU
36
B
GLY
37
n
37
GLY
37
B
HIS
38
n
38
HIS
38
B
TYR
39
n
39
TYR
39
B
HIS
40
n
40
HIS
40
B
PRO
41
n
41
PRO
41
B
ILE
42
n
42
ILE
42
B
LEU
43
n
43
LEU
43
B
LEU
44
n
44
LEU
44
B
PRO
45
n
45
PRO
45
B
LEU
46
n
46
LEU
46
B
GLU
47
n
47
GLU
47
B
SER
48
n
48
SER
48
B
HIS
49
n
49
HIS
49
B
ILE
50
n
50
ILE
50
B
LYS
51
n
51
LYS
51
B
SER
52
n
52
SER
52
B
GLU
53
n
53
GLU
53
B
PHE
54
n
54
PHE
54
B
LEU
55
n
55
LEU
55
B
HIS
56
n
56
HIS
56
B
LEU
57
n
57
LEU
57
B
GLY
58
n
58
GLY
58
B
LEU
59
n
59
LEU
59
B
SER
60
n
60
SER
60
B
GLY
61
n
61
GLY
61
B
ALA
62
n
62
ALA
62
B
ASN
63
n
63
ASN
63
B
VAL
64
n
64
VAL
64
B
THR
65
n
65
THR
65
B
LEU
66
n
66
LEU
66
B
PRO
67
n
67
PRO
67
B
PHE
68
n
68
PHE
68
B
LYS
69
n
69
LYS
69
B
GLU
70
n
70
GLU
70
B
ARG
71
n
71
ARG
71
B
ALA
72
n
72
ALA
72
B
PHE
73
n
73
PHE
73
B
GLN
74
n
74
GLN
74
B
VAL
75
n
75
VAL
75
B
CYS
76
n
76
CYS
76
B
ASP
77
n
77
ASP
77
B
LYS
78
n
78
LYS
78
B
ILE
79
n
79
ILE
79
B
LYS
80
n
80
LYS
80
B
GLY
81
n
81
GLY
81
B
ILE
82
n
82
ILE
82
B
ALA
83
n
83
ALA
83
B
LEU
84
n
84
LEU
84
B
GLU
85
n
85
GLU
85
B
CYS
86
n
86
CYS
86
B
GLY
87
n
87
GLY
87
B
ALA
88
n
88
ALA
88
B
VAL
89
n
89
VAL
89
B
ASN
90
n
90
ASN
90
B
THR
91
n
91
THR
91
B
LEU
92
n
92
LEU
92
B
VAL
93
n
93
VAL
93
B
LEU
94
n
94
LEU
94
B
GLU
95
n
95
GLU
95
B
ASN
96
n
96
ASN
96
B
ASP
97
n
97
ASP
97
B
GLU
98
n
98
GLU
98
B
LEU
99
n
99
LEU
99
B
VAL
100
n
100
VAL
100
B
GLY
101
n
101
GLY
101
B
TYR
102
n
102
TYR
102
B
ASN
103
n
103
ASN
103
B
THR
104
n
104
THR
104
B
ASP
105
n
105
ASP
105
B
ALA
106
n
106
ALA
106
B
LEU
107
n
107
LEU
107
B
GLY
108
n
108
GLY
108
B
PHE
109
n
109
PHE
109
B
TYR
110
n
110
TYR
110
B
LEU
111
n
111
LEU
111
B
SER
112
n
112
SER
112
B
LEU
113
n
113
LEU
113
B
LYS
114
n
114
LYS
114
B
n
115
115
B
n
116
116
B
n
117
117
B
TYR
118
n
118
TYR
118
B
GLN
119
n
119
GLN
119
B
ASN
120
n
120
ASN
120
B
ALA
121
n
121
ALA
121
B
LEU
122
n
122
LEU
122
B
ILE
123
n
123
ILE
123
B
LEU
124
n
124
LEU
124
B
GLY
125
n
125
GLY
125
B
ALA
126
n
126
ALA
126
B
GLY
127
n
127
GLY
127
B
GLY
128
n
128
GLY
128
B
SER
129
n
129
SER
129
B
ALA
130
n
130
ALA
130
B
LYS
131
n
131
LYS
131
B
ALA
132
n
132
ALA
132
B
LEU
133
n
133
LEU
133
B
ALA
134
n
134
ALA
134
B
CYS
135
n
135
CYS
135
B
GLU
136
n
136
GLU
136
B
LEU
137
n
137
LEU
137
B
LYS
138
n
138
LYS
138
B
LYS
139
n
139
LYS
139
B
GLN
140
n
140
GLN
140
B
GLY
141
n
141
GLY
141
B
LEU
142
n
142
LEU
142
B
GLN
143
n
143
GLN
143
B
VAL
144
n
144
VAL
144
B
SER
145
n
145
SER
145
B
VAL
146
n
146
VAL
146
B
LEU
147
n
147
LEU
147
B
ASN
148
n
148
ASN
148
B
ARG
149
n
149
ARG
149
B
SER
150
n
150
SER
150
B
SER
151
n
151
SER
151
B
ARG
152
n
152
ARG
152
B
GLY
153
n
153
GLY
153
B
LEU
154
n
154
LEU
154
B
ASP
155
n
155
ASP
155
B
PHE
156
n
156
PHE
156
B
PHE
157
n
157
PHE
157
B
GLN
158
n
158
GLN
158
B
ARG
159
n
159
ARG
159
B
LEU
160
n
160
LEU
160
B
GLY
161
n
161
GLY
161
B
CYS
162
n
162
CYS
162
B
ASP
163
n
163
ASP
163
B
CYS
164
n
164
CYS
164
B
PHE
165
n
165
PHE
165
B
MET
166
n
166
MET
166
B
GLU
167
n
167
GLU
167
B
PRO
168
n
168
PRO
168
B
PRO
169
n
169
PRO
169
B
LYS
170
n
170
LYS
170
B
SER
171
n
171
SER
171
B
ALA
172
n
172
ALA
172
B
PHE
173
n
173
PHE
173
B
ASP
174
n
174
ASP
174
B
LEU
175
n
175
LEU
175
B
ILE
176
n
176
ILE
176
B
ILE
177
n
177
ILE
177
B
ASN
178
n
178
ASN
178
B
ALA
179
n
179
ALA
179
B
THR
180
n
180
THR
180
B
SER
181
n
181
SER
181
B
ALA
182
n
182
ALA
182
B
SER
183
n
183
SER
183
B
LEU
184
n
184
LEU
184
B
HIS
185
n
185
HIS
185
B
ASN
186
n
186
ASN
186
B
GLU
187
n
187
GLU
187
B
LEU
188
n
188
LEU
188
B
PRO
189
n
189
PRO
189
B
LEU
190
n
190
LEU
190
B
ASN
191
n
191
ASN
191
B
LYS
192
n
192
LYS
192
B
GLU
193
n
193
GLU
193
B
VAL
194
n
194
VAL
194
B
LEU
195
n
195
LEU
195
B
LYS
196
n
196
LYS
196
B
GLY
197
n
197
GLY
197
B
TYR
198
n
198
TYR
198
B
PHE
199
n
199
PHE
199
B
LYS
200
n
200
LYS
200
B
GLU
201
n
201
GLU
201
B
GLY
202
n
202
GLY
202
B
LYS
203
n
203
LYS
203
B
LEU
204
n
204
LEU
204
B
ALA
205
n
205
ALA
205
B
TYR
206
n
206
TYR
206
B
ASP
207
n
207
ASP
207
B
LEU
208
n
208
LEU
208
B
ALA
209
n
209
ALA
209
B
TYR
210
n
210
TYR
210
B
GLY
211
n
211
GLY
211
B
PHE
212
n
212
PHE
212
B
LEU
213
n
213
LEU
213
B
THR
214
n
214
THR
214
B
PRO
215
n
215
PRO
215
B
PHE
216
n
216
PHE
216
B
LEU
217
n
217
LEU
217
B
SER
218
n
218
SER
218
B
LEU
219
n
219
LEU
219
B
ALA
220
n
220
ALA
220
B
LYS
221
n
221
LYS
221
B
GLU
222
n
222
GLU
222
B
LEU
223
n
223
LEU
223
B
LYS
224
n
224
LYS
224
B
THR
225
n
225
THR
225
B
PRO
226
n
226
PRO
226
B
PHE
227
n
227
PHE
227
B
GLN
228
n
228
GLN
228
B
ASP
229
n
229
ASP
229
B
GLY
230
n
230
GLY
230
B
LYS
231
n
231
LYS
231
B
ASP
232
n
232
ASP
232
B
MET
233
n
233
MET
233
B
LEU
234
n
234
LEU
234
B
ILE
235
n
235
ILE
235
B
TYR
236
n
236
TYR
236
B
GLN
237
n
237
GLN
237
B
ALA
238
n
238
ALA
238
B
ALA
239
n
239
ALA
239
B
LEU
240
n
240
LEU
240
B
SER
241
n
241
SER
241
B
PHE
242
n
242
PHE
242
B
GLU
243
n
243
GLU
243
B
LYS
244
n
244
LYS
244
B
PHE
245
n
245
PHE
245
B
SER
246
n
246
SER
246
B
ALA
247
n
247
ALA
247
B
SER
248
n
248
SER
248
B
GLN
249
n
249
GLN
249
B
ILE
250
n
250
ILE
250
B
PRO
251
n
251
PRO
251
B
TYR
252
n
252
TYR
252
B
SER
253
n
253
SER
253
B
LYS
254
n
254
LYS
254
B
ALA
255
n
255
ALA
255
B
PHE
256
n
256
PHE
256
B
GLU
257
n
257
GLU
257
B
VAL
258
n
258
VAL
258
B
MET
259
n
259
MET
259
B
ARG
260
n
260
ARG
260
B
SER
261
n
261
SER
261
B
VAL
262
n
262
VAL
262
B
n
263
263
B
n
264
264
B
n
265
265
B
n
266
266
B
n
267
267
B
n
268
268
B
n
269
269
B
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
HIS
38
A
O
HIS
38
A
N
PHE
6
A
N
PHE
6
A
N
PHE
9
A
N
PHE
9
A
O
ASN
63
A
O
ASN
63
A
N
ALA
62
A
N
ALA
62
A
O
LEU
92
A
O
LEU
92
A
N
VAL
93
A
N
VAL
93
A
O
VAL
100
A
O
VAL
100
A
O
GLY
101
A
O
GLY
101
A
N
LYS
78
A
N
LYS
78
A
O
PHE
165
A
O
PHE
165
A
N
VAL
146
A
N
VAL
146
A
O
LEU
147
A
O
LEU
147
A
N
ILE
123
A
N
ILE
123
A
N
LEU
122
A
N
LEU
122
A
O
LEU
175
A
O
LEU
175
A
N
ASN
178
A
N
ASN
178
A
O
TYR
206
A
O
TYR
206
A
N
ASP
207
A
N
ASP
207
A
O
GLN
228
A
O
GLN
228
B
O
HIS
38
B
O
HIS
38
B
N
PHE
6
B
N
PHE
6
B
N
GLY
7
B
N
GLY
7
B
O
ASN
63
B
O
ASN
63
B
N
ALA
62
B
N
ALA
62
B
O
LEU
92
B
O
LEU
92
B
N
GLU
95
B
N
GLU
95
B
O
GLU
98
B
O
GLU
98
B
O
GLY
101
B
O
GLY
101
B
N
LYS
78
B
N
LYS
78
B
O
PHE
165
B
O
PHE
165
B
N
VAL
146
B
N
VAL
146
B
O
SER
145
B
O
SER
145
B
N
ILE
123
B
N
ILE
123
B
N
LEU
124
B
N
LEU
124
B
O
ILE
177
B
O
ILE
177
B
N
ILE
176
B
N
ILE
176
B
O
TYR
206
B
O
TYR
206
B
N
ASP
207
B
N
ASP
207
B
O
GLN
228
B
O
GLN
228
1
A
GLN
115
A
GLN
115
1
Y
1
A
LYS
116
A
LYS
116
1
Y
1
A
ASN
117
A
ASN
117
1
Y
1
A
PHE
263
A
PHE
263
1
Y
1
A
HIS
264
A
HIS
264
1
Y
1
A
HIS
265
A
HIS
265
1
Y
1
A
HIS
266
A
HIS
266
1
Y
1
A
HIS
267
A
HIS
267
1
Y
1
A
HIS
268
A
HIS
268
1
Y
1
A
HIS
269
A
HIS
269
1
Y
1
B
GLN
115
B
GLN
115
1
Y
1
B
LYS
116
B
LYS
116
1
Y
1
B
ASN
117
B
ASN
117
1
Y
1
B
PHE
263
B
PHE
263
1
Y
1
B
HIS
264
B
HIS
264
1
Y
1
B
HIS
265
B
HIS
265
1
Y
1
B
HIS
266
B
HIS
266
1
Y
1
B
HIS
267
B
HIS
267
1
Y
1
B
HIS
268
B
HIS
268
1
Y
1
B
HIS
269
B
HIS
269
1
Y
1
B
ILE
50
73.59
-55.41
34.245
4.15
0.00
-0.91
-2.18
0.00
-2.21
0.940
0.926
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23124
0.20774
0.20896
2.04
28.23
1646
32345
30682
5.1
96.17
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.183
0.80
0.80
1.20
PDB ENTRY 3PHG
MAXIMUM LIKELIHOOD
MASK
2.04
28.23
165
4339
120
0
4054
0.015
0.022
4273
1.656
2.017
5773
5.945
5.000
514
35.637
24.451
173
16.001
15.000
744
18.736
15.000
12
0.112
0.200
641
0.018
0.021
3128
1.931
1.500
2570
3.156
2.000
4100
4.975
3.000
1703
7.306
4.500
1673
0.221
0.208
2.096
102
1873
20
80.35
2.04
30.0
3PHI
32329
1.0
1.0
0.037
0.037
1
32.2
4.4
96.9
0.131
2.05
2.12
10.3
2979
0.131
1
4.2
90.9
data collection
HKL-2000
phasing
AMoRE
refinement
REFMAC
5.4.0077
data reduction
HKL-2000
data scaling
HKL-2000
Shikimate 5-Dehydrogenase (aroE) from Helicobacter pylori in complex with Shikimate and NADPH
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
LYS
17
A
LYS
17
HELX_P
A
PHE
29
A
PHE
29
1
1
13
A
PHE
29
A
PHE
29
HELX_P
A
ARG
34
A
ARG
34
1
2
6
A
HIS
49
A
HIS
49
HELX_P
A
LEU
57
A
LEU
57
1
3
9
A
PHE
68
A
PHE
68
HELX_P
A
CYS
76
A
CYS
76
1
4
9
A
ILE
82
A
ILE
82
HELX_P
A
GLY
87
A
GLY
87
1
5
6
A
THR
104
A
THR
104
HELX_P
A
LEU
113
A
LEU
113
1
6
10
A
GLY
127
A
GLY
127
HELX_P
A
GLN
140
A
GLN
140
1
7
14
A
LEU
154
A
LEU
154
HELX_P
A
GLY
161
A
GLY
161
1
8
8
A
ASN
191
A
ASN
191
HELX_P
A
GLY
202
A
GLY
202
1
9
12
A
THR
214
A
THR
214
HELX_P
A
LEU
223
A
LEU
223
1
10
10
A
GLY
230
A
GLY
230
HELX_P
A
SER
246
A
SER
246
1
11
17
A
PRO
251
A
PRO
251
HELX_P
A
VAL
262
A
VAL
262
1
12
12
B
LYS
17
B
LYS
17
HELX_P
B
PHE
29
B
PHE
29
1
13
13
B
PHE
29
B
PHE
29
HELX_P
B
ARG
34
B
ARG
34
1
14
6
B
ILE
50
B
ILE
50
HELX_P
B
GLY
58
B
GLY
58
1
15
9
B
PHE
68
B
PHE
68
HELX_P
B
CYS
76
B
CYS
76
1
16
9
B
ILE
82
B
ILE
82
HELX_P
B
GLY
87
B
GLY
87
1
17
6
B
THR
104
B
THR
104
HELX_P
B
LEU
113
B
LEU
113
1
18
10
B
GLY
127
B
GLY
127
HELX_P
B
GLN
140
B
GLN
140
1
19
14
B
LEU
154
B
LEU
154
HELX_P
B
LEU
160
B
LEU
160
1
20
7
B
SER
181
B
SER
181
HELX_P
B
HIS
185
B
HIS
185
5
21
5
B
ASN
191
B
ASN
191
HELX_P
B
GLY
202
B
GLY
202
1
22
12
B
THR
214
B
THR
214
HELX_P
B
LEU
223
B
LEU
223
1
23
10
B
GLY
230
B
GLY
230
HELX_P
B
SER
246
B
SER
246
1
24
17
B
PRO
251
B
PRO
251
HELX_P
B
VAL
262
B
VAL
262
1
25
12
OXIDOREDUCTASE
shikimate dehydrogenase, shikimate pathway, Helicobacter pylori, oxidoreductase, alpha/beta domain, Rossmann fold
A
ASN
11
A
ASN
11
1
A
PRO
12
A
PRO
12
6.38
A
LEU
66
A
LEU
66
1
A
PRO
67
A
PRO
67
7.07
B
ASN
11
B
ASN
11
1
B
PRO
12
B
PRO
12
5.38
B
LEU
66
B
LEU
66
1
B
PRO
67
B
PRO
67
-5.90
AROE_HELPY
UNP
1
1
P56119
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIK
GIALECGAVNTLVLENDELVGYNTDALGFYLSLKQKNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRL
GCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTPFLSLAKELKTPFQDGKDMLIYQAAL
SFEKFSASQIPYSKAFEVMRSVF
1
263
3PHI
1
263
P56119
A
1
1
263
1
263
3PHI
1
263
P56119
B
1
1
263
1
expression tag
HIS
264
3PHI
A
P56119
UNP
264
1
expression tag
HIS
265
3PHI
A
P56119
UNP
265
1
expression tag
HIS
266
3PHI
A
P56119
UNP
266
1
expression tag
HIS
267
3PHI
A
P56119
UNP
267
1
expression tag
HIS
268
3PHI
A
P56119
UNP
268
1
expression tag
HIS
269
3PHI
A
P56119
UNP
269
2
expression tag
HIS
264
3PHI
B
P56119
UNP
264
2
expression tag
HIS
265
3PHI
B
P56119
UNP
265
2
expression tag
HIS
266
3PHI
B
P56119
UNP
266
2
expression tag
HIS
267
3PHI
B
P56119
UNP
267
2
expression tag
HIS
268
3PHI
B
P56119
UNP
268
2
expression tag
HIS
269
3PHI
B
P56119
UNP
269
6
6
6
6
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
LEU
36
A
LEU
36
A
LEU
43
A
LEU
43
A
LEU
3
A
LEU
3
A
GLY
10
A
GLY
10
A
GLY
61
A
GLY
61
A
VAL
64
A
VAL
64
A
THR
91
A
THR
91
A
GLU
95
A
GLU
95
A
GLU
98
A
GLU
98
A
TYR
102
A
TYR
102
A
LYS
78
A
LYS
78
A
ILE
79
A
ILE
79
A
ASP
163
A
ASP
163
A
PHE
165
A
PHE
165
A
GLN
143
A
GLN
143
A
LEU
147
A
LEU
147
A
ASN
120
A
ASN
120
A
LEU
124
A
LEU
124
A
LEU
175
A
LEU
175
A
ASN
178
A
ASN
178
A
LEU
204
A
LEU
204
A
ASP
207
A
ASP
207
A
PHE
227
A
PHE
227
A
GLN
228
A
GLN
228
B
LEU
36
B
LEU
36
B
LEU
43
B
LEU
43
B
LEU
3
B
LEU
3
B
GLY
10
B
GLY
10
B
GLY
61
B
GLY
61
B
VAL
64
B
VAL
64
B
THR
91
B
THR
91
B
GLU
95
B
GLU
95
B
GLU
98
B
GLU
98
B
TYR
102
B
TYR
102
B
LYS
78
B
LYS
78
B
ILE
79
B
ILE
79
B
ASP
163
B
ASP
163
B
PHE
165
B
PHE
165
B
GLN
143
B
GLN
143
B
LEU
147
B
LEU
147
B
ASN
120
B
ASN
120
B
LEU
124
B
LEU
124
B
LEU
175
B
LEU
175
B
ASN
178
B
ASN
178
B
LEU
204
B
LEU
204
B
ASP
207
B
ASP
207
B
PHE
227
B
PHE
227
B
GLN
228
B
GLN
228
BINDING SITE FOR RESIDUE SKM A 500
A
SKM
500
Software
12
BINDING SITE FOR RESIDUE NDP A 1411
A
NDP
1411
Software
28
BINDING SITE FOR RESIDUE SKM B 500
B
SKM
500
Software
11
BINDING SITE FOR RESIDUE NDP B 1411
B
NDP
1411
Software
33
A
SER
16
A
SER
16
12
1_555
A
SER
18
A
SER
18
12
1_555
A
ASN
63
A
ASN
63
12
1_555
A
VAL
64
A
VAL
64
12
1_555
A
THR
65
A
THR
65
12
1_555
A
LYS
69
A
LYS
69
12
1_555
A
ASN
90
A
ASN
90
12
1_555
A
ASP
105
A
ASP
105
12
1_555
A
TYR
210
A
TYR
210
12
1_555
A
GLN
237
A
GLN
237
12
1_555
A
HOH
286
G
HOH
12
1_555
A
NDP
1411
D
NDP
12
1_555
A
LEU
66
A
LEU
66
28
1_555
A
PRO
67
A
PRO
67
28
1_555
A
LYS
69
A
LYS
69
28
1_555
A
ALA
126
A
ALA
126
28
1_555
A
GLY
127
A
GLY
127
28
1_555
A
GLY
128
A
GLY
128
28
1_555
A
SER
129
A
SER
129
28
1_555
A
ASN
148
A
ASN
148
28
1_555
A
ARG
149
A
ARG
149
28
1_555
A
SER
150
A
SER
150
28
1_555
A
ALA
179
A
ALA
179
28
1_555
A
THR
180
A
THR
180
28
1_555
A
SER
181
A
SER
181
28
1_555
A
LEU
184
A
LEU
184
28
1_555
A
PRO
189
A
PRO
189
28
1_555
A
LEU
208
A
LEU
208
28
1_555
A
TYR
210
A
TYR
210
28
1_555
A
GLY
230
A
GLY
230
28
1_555
A
MET
233
A
MET
233
28
1_555
A
LEU
234
A
LEU
234
28
1_555
A
HOH
273
G
HOH
28
1_555
A
HOH
276
G
HOH
28
1_555
A
HOH
286
G
HOH
28
1_555
A
HOH
306
G
HOH
28
1_555
A
HOH
309
G
HOH
28
1_555
A
HOH
316
G
HOH
28
1_555
A
HOH
347
G
HOH
28
1_555
A
SKM
500
C
SKM
28
1_555
B
SER
16
B
SER
16
11
1_555
B
SER
18
B
SER
18
11
1_555
B
ASN
63
B
ASN
63
11
1_555
B
THR
65
B
THR
65
11
1_555
B
LYS
69
B
LYS
69
11
1_555
B
ASN
90
B
ASN
90
11
1_555
B
ASP
105
B
ASP
105
11
1_555
B
TYR
210
B
TYR
210
11
1_555
B
GLN
237
B
GLN
237
11
1_555
B
HOH
293
H
HOH
11
1_555
B
NDP
1411
F
NDP
11
1_555
B
LEU
66
B
LEU
66
33
1_555
B
PRO
67
B
PRO
67
33
1_555
B
LYS
69
B
LYS
69
33
1_555
B
ASP
105
B
ASP
105
33
1_555
B
GLY
125
B
GLY
125
33
1_555
B
ALA
126
B
ALA
126
33
1_555
B
GLY
127
B
GLY
127
33
1_555
B
GLY
128
B
GLY
128
33
1_555
B
SER
129
B
SER
129
33
1_555
B
ASN
148
B
ASN
148
33
1_555
B
ARG
149
B
ARG
149
33
1_555
B
SER
150
B
SER
150
33
1_555
B
ALA
179
B
ALA
179
33
1_555
B
THR
180
B
THR
180
33
1_555
B
SER
181
B
SER
181
33
1_555
B
ALA
182
B
ALA
182
33
1_555
B
LEU
184
B
LEU
184
33
1_555
B
GLU
187
B
GLU
187
33
1_555
B
PRO
189
B
PRO
189
33
1_555
B
LEU
208
B
LEU
208
33
1_555
B
TYR
210
B
TYR
210
33
1_555
B
GLY
230
B
GLY
230
33
1_555
B
MET
233
B
MET
233
33
1_555
B
LEU
234
B
LEU
234
33
1_555
B
HOH
271
H
HOH
33
1_555
B
HOH
279
H
HOH
33
1_555
B
HOH
293
H
HOH
33
1_555
B
HOH
297
H
HOH
33
1_555
B
HOH
309
H
HOH
33
1_555
B
HOH
336
H
HOH
33
1_555
B
HOH
339
H
HOH
33
1_555
B
HOH
342
H
HOH
33
1_555
B
SKM
500
E
SKM
33
1_555
4
P 1 21 1