0.014103
0.000000
0.000000
0.000000
0.009523
0.000000
0.000000
0.000000
0.026280
0.00000
0.00000
0.00000
Kuglstatter, A.
Wong, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
70.905
105.013
38.052
C22 H23 F N6 O5
470.454
6-({5-fluoro-2-[(3,4,5-trimethoxyphenyl)amino]pyrimidin-4-yl}amino)-2,2-dimethyl-2H-pyrido[3,2-b][1,4]oxazin-3(4H)-one
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
Y
2
N
N
Y
3
N
C
Y
4
N
C
N
5
N
C
Y
6
N
N
Y
7
N
C
N
8
N
O
N
9
N
C
N
10
N
N
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
N
Y
18
N
C
Y
19
N
C
Y
20
N
C
N
21
N
N
Y
22
N
C
N
23
N
O
Y
24
N
C
N
25
N
F
Y
26
N
C
N
27
N
O
N
28
N
O
N
29
N
O
N
30
N
C
N
31
N
C
N
32
N
C
N
33
N
C
N
34
N
C
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
O
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
N
N
72
S
C
N
73
N
C
N
74
N
O
N
75
N
C
N
76
N
C
N
77
N
C
N
78
N
N
N
79
N
C
N
80
N
N
N
81
N
N
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
O
N
105
N
N
N
106
N
O
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
O
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
R
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
S
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
S
C
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
N
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
S
C
N
167
N
C
N
168
N
O
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
Y
199
N
C
Y
200
N
N
Y
201
N
C
Y
202
N
C
Y
203
N
N
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
S
C
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
N
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
S
N
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
O
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
R
C
N
366
N
O
N
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
N
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
N
416
N
O
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
N
434
N
C
N
435
N
C
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
1
N
sing
N
2
N
sing
Y
3
N
doub
Y
4
N
sing
Y
5
N
doub
Y
6
N
sing
N
7
N
sing
Y
8
N
sing
N
9
N
sing
N
10
N
doub
Y
11
N
sing
Y
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
Y
19
N
doub
N
20
N
sing
Y
21
N
doub
Y
22
N
sing
N
23
N
sing
Y
24
N
doub
Y
25
N
doub
Y
26
N
sing
N
27
N
sing
Y
28
N
doub
N
29
N
sing
Y
30
N
sing
Y
31
N
doub
Y
32
N
sing
N
33
N
sing
Y
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
Y
200
N
sing
Y
201
N
doub
Y
202
N
doub
N
203
N
sing
Y
204
N
sing
N
205
N
sing
Y
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
doub
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
US
Protein Sci.
PRCIEI
0795
0961-8368
20
428
436
10.1002/pro.575
21280133
Insights into the conformational flexibility of Bruton's tyrosine kinase from multiple ligand complex structures.
2011
10.2210/pdb3piy/pdb
pdb_00003piy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
BL9-2
SSRL
0.9795
SYNCHROTRON
SSRL BEAMLINE BL9-2
31827.521
Tyrosine-protein kinase BTK
2.7.10.2
unp residues 387-659
1
man
polymer
470.454
6-({5-fluoro-2-[(3,4,5-trimethoxyphenyl)amino]pyrimidin-4-yl}amino)-2,2-dimethyl-2H-pyrido[3,2-b][1,4]oxazin-3(4H)-one
1
syn
non-polymer
18.015
water
38
nat
water
Agammaglobulinaemia tyrosine kinase, ATK, B-cell progenitor kinase, BPK, Bruton tyrosine kinase
no
no
GTAGLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT
KQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY
VLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEK
VYTIMYSCWHEKADERPTFKILLSNILDVMDEES
GTAGLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT
KQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY
VLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEK
VYTIMYSCWHEKADERPTFKILLSNILDVMDEES
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
fall armyworm
sample
AGMX1, ATK, BPK, BTK
9606
Homo sapiens
SF9
7108
Spodoptera frugiperda
baculovirus
1
2.23
44.73
VAPOR DIFFUSION, HANGING DROP
8.0
33% PEG3350, 0.1M HEPES, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-01-12
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2010-11-08
REL
REL
585
6-({5-fluoro-2-[(3,4,5-trimethoxyphenyl)amino]pyrimidin-4-yl}amino)-2,2-dimethyl-2H-pyrido[3,2-b][1,4]oxazin-3(4H)-one
HOH
water
3PIX
PDB ENTRY 3PIX
PDB
experimental model
585
1
2
585
585
1
A
HOH
1002
3
HOH
HOH
1002
A
HOH
1003
3
HOH
HOH
1003
A
HOH
1007
3
HOH
HOH
1007
A
HOH
1009
3
HOH
HOH
1009
A
HOH
1011
3
HOH
HOH
1011
A
HOH
1013
3
HOH
HOH
1013
A
HOH
1014
3
HOH
HOH
1014
A
HOH
1016
3
HOH
HOH
1016
A
HOH
1018
3
HOH
HOH
1018
A
HOH
1020
3
HOH
HOH
1020
A
HOH
1021
3
HOH
HOH
1021
A
HOH
1023
3
HOH
HOH
1023
A
HOH
1032
3
HOH
HOH
1032
A
HOH
1034
3
HOH
HOH
1034
A
HOH
1035
3
HOH
HOH
1035
A
HOH
1037
3
HOH
HOH
1037
A
HOH
1040
3
HOH
HOH
1040
A
HOH
1044
3
HOH
HOH
1044
A
HOH
1048
3
HOH
HOH
1048
A
HOH
1065
3
HOH
HOH
1065
A
HOH
3001
3
HOH
HOH
3001
A
HOH
3003
3
HOH
HOH
3003
A
HOH
3006
3
HOH
HOH
3006
A
HOH
3010
3
HOH
HOH
3010
A
HOH
3011
3
HOH
HOH
3011
A
HOH
3019
3
HOH
HOH
3019
A
HOH
3020
3
HOH
HOH
3020
A
HOH
3024
3
HOH
HOH
3024
A
HOH
3026
3
HOH
HOH
3026
A
HOH
3030
3
HOH
HOH
3030
A
HOH
3031
3
HOH
HOH
3031
A
HOH
3032
3
HOH
HOH
3032
A
HOH
3034
3
HOH
HOH
3034
A
HOH
3048
3
HOH
HOH
3048
A
HOH
3057
3
HOH
HOH
3057
A
HOH
3063
3
HOH
HOH
3063
A
HOH
3084
3
HOH
HOH
3084
A
HOH
3098
3
HOH
HOH
3098
A
n
1
386
A
n
2
387
A
n
3
388
A
n
4
389
A
n
5
390
A
GLY
391
n
6
GLY
391
A
TYR
392
n
7
TYR
392
A
GLY
393
n
8
GLY
393
A
SER
394
n
9
SER
394
A
TRP
395
n
10
TRP
395
A
GLU
396
n
11
GLU
396
A
ILE
397
n
12
ILE
397
A
ASP
398
n
13
ASP
398
A
PRO
399
n
14
PRO
399
A
LYS
400
n
15
LYS
400
A
ASP
401
n
16
ASP
401
A
LEU
402
n
17
LEU
402
A
THR
403
n
18
THR
403
A
PHE
404
n
19
PHE
404
A
LEU
405
n
20
LEU
405
A
LYS
406
n
21
LYS
406
A
GLU
407
n
22
GLU
407
A
LEU
408
n
23
LEU
408
A
GLY
409
n
24
GLY
409
A
THR
410
n
25
THR
410
A
GLY
411
n
26
GLY
411
A
GLN
412
n
27
GLN
412
A
PHE
413
n
28
PHE
413
A
GLY
414
n
29
GLY
414
A
VAL
415
n
30
VAL
415
A
VAL
416
n
31
VAL
416
A
LYS
417
n
32
LYS
417
A
TYR
418
n
33
TYR
418
A
GLY
419
n
34
GLY
419
A
LYS
420
n
35
LYS
420
A
TRP
421
n
36
TRP
421
A
ARG
422
n
37
ARG
422
A
GLY
423
n
38
GLY
423
A
GLN
424
n
39
GLN
424
A
TYR
425
n
40
TYR
425
A
ASP
426
n
41
ASP
426
A
VAL
427
n
42
VAL
427
A
ALA
428
n
43
ALA
428
A
ILE
429
n
44
ILE
429
A
LYS
430
n
45
LYS
430
A
MET
431
n
46
MET
431
A
ILE
432
n
47
ILE
432
A
n
48
433
A
n
49
434
A
n
50
435
A
n
51
436
A
n
52
437
A
n
53
438
A
GLU
439
n
54
GLU
439
A
ASP
440
n
55
ASP
440
A
GLU
441
n
56
GLU
441
A
PHE
442
n
57
PHE
442
A
ILE
443
n
58
ILE
443
A
GLU
444
n
59
GLU
444
A
GLU
445
n
60
GLU
445
A
ALA
446
n
61
ALA
446
A
LYS
447
n
62
LYS
447
A
VAL
448
n
63
VAL
448
A
MET
449
n
64
MET
449
A
MET
450
n
65
MET
450
A
ASN
451
n
66
ASN
451
A
LEU
452
n
67
LEU
452
A
SER
453
n
68
SER
453
A
HIS
454
n
69
HIS
454
A
GLU
455
n
70
GLU
455
A
LYS
456
n
71
LYS
456
A
LEU
457
n
72
LEU
457
A
VAL
458
n
73
VAL
458
A
GLN
459
n
74
GLN
459
A
LEU
460
n
75
LEU
460
A
TYR
461
n
76
TYR
461
A
GLY
462
n
77
GLY
462
A
VAL
463
n
78
VAL
463
A
CYS
464
n
79
CYS
464
A
THR
465
n
80
THR
465
A
LYS
466
n
81
LYS
466
A
GLN
467
n
82
GLN
467
A
ARG
468
n
83
ARG
468
A
PRO
469
n
84
PRO
469
A
ILE
470
n
85
ILE
470
A
PHE
471
n
86
PHE
471
A
ILE
472
n
87
ILE
472
A
ILE
473
n
88
ILE
473
A
THR
474
n
89
THR
474
A
GLU
475
n
90
GLU
475
A
TYR
476
n
91
TYR
476
A
MET
477
n
92
MET
477
A
ALA
478
n
93
ALA
478
A
ASN
479
n
94
ASN
479
A
GLY
480
n
95
GLY
480
A
CYS
481
n
96
CYS
481
A
LEU
482
n
97
LEU
482
A
LEU
483
n
98
LEU
483
A
ASN
484
n
99
ASN
484
A
TYR
485
n
100
TYR
485
A
LEU
486
n
101
LEU
486
A
ARG
487
n
102
ARG
487
A
GLU
488
n
103
GLU
488
A
MET
489
n
104
MET
489
A
ARG
490
n
105
ARG
490
A
HIS
491
n
106
HIS
491
A
ARG
492
n
107
ARG
492
A
PHE
493
n
108
PHE
493
A
GLN
494
n
109
GLN
494
A
THR
495
n
110
THR
495
A
GLN
496
n
111
GLN
496
A
GLN
497
n
112
GLN
497
A
LEU
498
n
113
LEU
498
A
LEU
499
n
114
LEU
499
A
GLU
500
n
115
GLU
500
A
MET
501
n
116
MET
501
A
CYS
502
n
117
CYS
502
A
LYS
503
n
118
LYS
503
A
ASP
504
n
119
ASP
504
A
VAL
505
n
120
VAL
505
A
CYS
506
n
121
CYS
506
A
GLU
507
n
122
GLU
507
A
ALA
508
n
123
ALA
508
A
MET
509
n
124
MET
509
A
GLU
510
n
125
GLU
510
A
TYR
511
n
126
TYR
511
A
LEU
512
n
127
LEU
512
A
GLU
513
n
128
GLU
513
A
SER
514
n
129
SER
514
A
LYS
515
n
130
LYS
515
A
GLN
516
n
131
GLN
516
A
PHE
517
n
132
PHE
517
A
LEU
518
n
133
LEU
518
A
HIS
519
n
134
HIS
519
A
ARG
520
n
135
ARG
520
A
ASP
521
n
136
ASP
521
A
LEU
522
n
137
LEU
522
A
ALA
523
n
138
ALA
523
A
ALA
524
n
139
ALA
524
A
ARG
525
n
140
ARG
525
A
ASN
526
n
141
ASN
526
A
CYS
527
n
142
CYS
527
A
LEU
528
n
143
LEU
528
A
VAL
529
n
144
VAL
529
A
ASN
530
n
145
ASN
530
A
ASP
531
n
146
ASP
531
A
GLN
532
n
147
GLN
532
A
GLY
533
n
148
GLY
533
A
VAL
534
n
149
VAL
534
A
VAL
535
n
150
VAL
535
A
LYS
536
n
151
LYS
536
A
VAL
537
n
152
VAL
537
A
SER
538
n
153
SER
538
A
ASP
539
n
154
ASP
539
A
PHE
540
n
155
PHE
540
A
GLY
541
n
156
GLY
541
A
LEU
542
n
157
LEU
542
A
SER
543
n
158
SER
543
A
ARG
544
n
159
ARG
544
A
TYR
545
n
160
TYR
545
A
VAL
546
n
161
VAL
546
A
LEU
547
n
162
LEU
547
A
ASP
548
n
163
ASP
548
A
ASP
549
n
164
ASP
549
A
GLU
550
n
165
GLU
550
A
TYR
551
n
166
TYR
551
A
THR
552
n
167
THR
552
A
SER
553
n
168
SER
553
A
SER
554
n
169
SER
554
A
VAL
555
n
170
VAL
555
A
GLY
556
n
171
GLY
556
A
SER
557
n
172
SER
557
A
LYS
558
n
173
LYS
558
A
PHE
559
n
174
PHE
559
A
PRO
560
n
175
PRO
560
A
VAL
561
n
176
VAL
561
A
ARG
562
n
177
ARG
562
A
TRP
563
n
178
TRP
563
A
SER
564
n
179
SER
564
A
PRO
565
n
180
PRO
565
A
PRO
566
n
181
PRO
566
A
GLU
567
n
182
GLU
567
A
VAL
568
n
183
VAL
568
A
LEU
569
n
184
LEU
569
A
MET
570
n
185
MET
570
A
TYR
571
n
186
TYR
571
A
SER
572
n
187
SER
572
A
LYS
573
n
188
LYS
573
A
PHE
574
n
189
PHE
574
A
SER
575
n
190
SER
575
A
SER
576
n
191
SER
576
A
LYS
577
n
192
LYS
577
A
SER
578
n
193
SER
578
A
ASP
579
n
194
ASP
579
A
ILE
580
n
195
ILE
580
A
TRP
581
n
196
TRP
581
A
ALA
582
n
197
ALA
582
A
PHE
583
n
198
PHE
583
A
GLY
584
n
199
GLY
584
A
VAL
585
n
200
VAL
585
A
LEU
586
n
201
LEU
586
A
MET
587
n
202
MET
587
A
TRP
588
n
203
TRP
588
A
GLU
589
n
204
GLU
589
A
ILE
590
n
205
ILE
590
A
TYR
591
n
206
TYR
591
A
SER
592
n
207
SER
592
A
LEU
593
n
208
LEU
593
A
GLY
594
n
209
GLY
594
A
LYS
595
n
210
LYS
595
A
MET
596
n
211
MET
596
A
PRO
597
n
212
PRO
597
A
TYR
598
n
213
TYR
598
A
GLU
599
n
214
GLU
599
A
ARG
600
n
215
ARG
600
A
PHE
601
n
216
PHE
601
A
THR
602
n
217
THR
602
A
ASN
603
n
218
ASN
603
A
SER
604
n
219
SER
604
A
GLU
605
n
220
GLU
605
A
THR
606
n
221
THR
606
A
ALA
607
n
222
ALA
607
A
GLU
608
n
223
GLU
608
A
HIS
609
n
224
HIS
609
A
ILE
610
n
225
ILE
610
A
ALA
611
n
226
ALA
611
A
GLN
612
n
227
GLN
612
A
GLY
613
n
228
GLY
613
A
LEU
614
n
229
LEU
614
A
ARG
615
n
230
ARG
615
A
LEU
616
n
231
LEU
616
A
TYR
617
n
232
TYR
617
A
ARG
618
n
233
ARG
618
A
PRO
619
n
234
PRO
619
A
HIS
620
n
235
HIS
620
A
LEU
621
n
236
LEU
621
A
ALA
622
n
237
ALA
622
A
SER
623
n
238
SER
623
A
GLU
624
n
239
GLU
624
A
LYS
625
n
240
LYS
625
A
VAL
626
n
241
VAL
626
A
TYR
627
n
242
TYR
627
A
THR
628
n
243
THR
628
A
ILE
629
n
244
ILE
629
A
MET
630
n
245
MET
630
A
TYR
631
n
246
TYR
631
A
SER
632
n
247
SER
632
A
CYS
633
n
248
CYS
633
A
TRP
634
n
249
TRP
634
A
HIS
635
n
250
HIS
635
A
GLU
636
n
251
GLU
636
A
LYS
637
n
252
LYS
637
A
ALA
638
n
253
ALA
638
A
ASP
639
n
254
ASP
639
A
GLU
640
n
255
GLU
640
A
ARG
641
n
256
ARG
641
A
PRO
642
n
257
PRO
642
A
THR
643
n
258
THR
643
A
PHE
644
n
259
PHE
644
A
LYS
645
n
260
LYS
645
A
ILE
646
n
261
ILE
646
A
LEU
647
n
262
LEU
647
A
LEU
648
n
263
LEU
648
A
SER
649
n
264
SER
649
A
ASN
650
n
265
ASN
650
A
ILE
651
n
266
ILE
651
A
LEU
652
n
267
LEU
652
A
ASP
653
n
268
ASP
653
A
VAL
654
n
269
VAL
654
A
MET
655
n
270
MET
655
A
ASP
656
n
271
ASP
656
A
GLU
657
n
272
GLU
657
A
GLU
658
n
273
GLU
658
A
n
274
659
A
1.5432
-0.3865
-0.5378
2.0700
-0.2722
1.4324
-0.0463
-0.1572
-0.0739
0.2189
-0.0163
-0.1790
0.1161
0.0998
0.0626
0.0617
0.0027
-0.0135
0.0186
0.0129
0.0248
refined
-23.6209
-2.7967
-11.2899
X-RAY DIFFRACTION
0.9938
0.5148
-0.1297
1.1699
0.1029
3.0393
-0.0702
0.1581
-0.1090
-0.0680
0.0185
-0.0078
0.0834
-0.0118
0.0518
0.0082
-0.0084
0.0067
0.0297
-0.0205
0.0149
refined
-24.9718
18.0396
-23.6417
X-RAY DIFFRACTION
8.7387
-1.2963
3.4668
0.4264
0.5810
6.6716
-0.2081
-0.5590
0.0526
0.1095
0.1245
-0.0078
0.1120
-0.0319
0.0836
0.1980
0.0134
-0.0565
0.0430
0.0025
0.0313
refined
-23.6237
4.4614
-1.5063
X-RAY DIFFRACTION
3.0985
-5.0755
2.5407
8.3315
-4.1777
2.0978
0.0996
0.0852
0.0225
-0.0639
-0.1547
-0.0229
0.0257
0.1297
0.0551
0.0214
-0.0601
-0.0197
0.2505
-0.0456
0.1907
refined
-9.8832
2.9367
-12.1800
X-RAY DIFFRACTION
1.2853
-0.5358
-0.7691
1.8309
0.8672
3.1575
0.0007
-0.1724
-0.1432
0.2489
0.0145
-0.2724
0.2938
0.3312
-0.0151
0.0747
0.0149
-0.0372
0.0502
0.0346
0.0942
refined
-19.7171
13.6726
-9.9162
X-RAY DIFFRACTION
A
391
A
407
X-RAY DIFFRACTION
1
A
453
A
476
X-RAY DIFFRACTION
1
A
418
A
432
X-RAY DIFFRACTION
1
A
477
A
514
X-RAY DIFFRACTION
2
A
559
A
658
X-RAY DIFFRACTION
2
A
439
A
452
X-RAY DIFFRACTION
3
A
408
A
417
X-RAY DIFFRACTION
4
A
515
A
558
X-RAY DIFFRACTION
5
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
406
A
N
LYS
21
A
O
TYR
418
A
O
TYR
33
A
N
LYS
417
A
N
LYS
32
A
O
ILE
429
A
O
ILE
44
A
N
LYS
430
A
N
LYS
45
A
O
ILE
472
A
O
ILE
87
A
O
ILE
473
A
O
ILE
88
A
N
TYR
461
A
N
TYR
76
A
N
LEU
528
A
N
LEU
143
A
O
LYS
536
A
O
LYS
151
1
A
GLY
386
A
GLY
1
1
Y
1
A
THR
387
A
THR
2
1
Y
1
A
ALA
388
A
ALA
3
1
Y
1
A
GLY
389
A
GLY
4
1
Y
1
A
LEU
390
A
LEU
5
1
Y
1
A
LYS
433
A
LYS
48
1
Y
1
A
GLU
434
A
GLU
49
1
Y
1
A
GLY
435
A
GLY
50
1
Y
1
A
SER
436
A
SER
51
1
Y
1
A
MET
437
A
MET
52
1
Y
1
A
SER
438
A
SER
53
1
Y
1
A
SER
659
A
SER
274
1
Y
1
A
LEU
405
-137.78
-54.17
1
A
GLN
424
-125.43
-52.85
1
A
ARG
492
46.98
72.05
1
A
ARG
520
77.57
-19.27
1
A
VAL
546
-103.58
-66.35
1
A
SER
554
73.68
35.36
28.345
1.90
0.00
0.00
-0.91
0.00
-0.98
0.905
0.863
0.29515
0.22476
0.22823
2.55
38.04
447
8860
4.8
95.29
15.986
0.292
RANDOM
1
THROUGHOUT
FOURIER SYNTHESIS
0.390
0.80
0.80
1.40
PDB ENTRY 3PIX
MAXIMUM LIKELIHOOD
MASK
2.55
38.04
38
2226
34
0
2154
0.014
0.022
2243
1.490
1.976
3028
6.447
5.000
260
36.407
23.925
107
17.894
15.000
405
14.651
15.000
13
0.098
0.200
314
0.006
0.021
1694
0.651
1.500
1302
1.251
2.000
2101
1.901
3.000
941
3.053
4.500
927
0.458
0.268
2.617
31
535
20
82.75
2.55
40.0
3PIY
9339
0.181
1
6.1
4.9
95.4
2.55
2.64
2.1
0.503
3.3
85.5
data collection
ADSC
Quantum
refinement
REFMAC
data reduction
DENZO
data scaling
SCALEPACK
phasing
REFMAC
Crystal structure of BTK kinase domain complexed with R406
1
N
N
2
N
N
3
N
N
A
TYR
392
A
TYR
7
HELX_P
A
GLU
396
A
GLU
11
5
1
5
A
ASP
398
A
ASP
13
HELX_P
A
LYS
400
A
LYS
15
5
2
3
A
GLU
439
A
GLU
54
HELX_P
A
ASN
451
A
ASN
66
1
3
13
A
CYS
481
A
CYS
96
HELX_P
A
GLU
488
A
GLU
103
1
4
8
A
MET
489
A
MET
104
HELX_P
A
ARG
492
A
ARG
107
5
5
4
A
GLN
494
A
GLN
109
HELX_P
A
LYS
515
A
LYS
130
1
6
22
A
ALA
523
A
ALA
138
HELX_P
A
ARG
525
A
ARG
140
5
7
3
A
VAL
555
A
VAL
170
HELX_P
A
PHE
559
A
PHE
174
5
8
5
A
PRO
560
A
PRO
175
HELX_P
A
SER
564
A
SER
179
5
9
5
A
PRO
565
A
PRO
180
HELX_P
A
SER
572
A
SER
187
1
10
8
A
SER
575
A
SER
190
HELX_P
A
SER
592
A
SER
207
1
11
18
A
THR
602
A
THR
217
HELX_P
A
GLN
612
A
GLN
227
1
12
11
A
SER
623
A
SER
238
HELX_P
A
CYS
633
A
CYS
248
1
13
11
A
LYS
637
A
LYS
252
HELX_P
A
ARG
641
A
ARG
256
5
14
5
A
THR
643
A
THR
258
HELX_P
A
GLU
658
A
GLU
273
1
15
16
TRANSFERASE/INHIBITOR
helix C-out, DFG-in, TRANSFERASE, TRANSFERASE-INHIBITOR complex
A
ARG
468
A
ARG
83
1
A
PRO
469
A
PRO
84
1.07
BTK_HUMAN
UNP
1
387
Q06187
TAGLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK
QRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV
LDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKV
YTIMYSCWHEKADERPTFKILLSNILDVMDEES
387
659
3PIY
387
659
Q06187
A
1
2
274
1
expression tag
GLY
386
3PIY
A
Q06187
UNP
1
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
402
A
LEU
17
A
THR
410
A
THR
25
A
VAL
415
A
VAL
30
A
TRP
421
A
TRP
36
A
TYR
425
A
TYR
40
A
MET
431
A
MET
46
A
PHE
471
A
PHE
86
A
GLU
475
A
GLU
90
A
LEU
460
A
LEU
75
A
CYS
464
A
CYS
79
A
CYS
527
A
CYS
142
A
VAL
529
A
VAL
144
A
VAL
535
A
VAL
150
A
VAL
537
A
VAL
152
BINDING SITE FOR RESIDUE 585 A 1
A
585
1
Software
14
A
LEU
408
A
LEU
23
14
1_555
A
GLY
409
A
GLY
24
14
1_555
A
VAL
416
A
VAL
31
14
1_555
A
ALA
428
A
ALA
43
14
1_555
A
THR
474
A
THR
89
14
1_555
A
GLU
475
A
GLU
90
14
1_555
A
TYR
476
A
TYR
91
14
1_555
A
MET
477
A
MET
92
14
1_555
A
ALA
478
A
ALA
93
14
1_555
A
GLY
480
A
GLY
95
14
1_555
A
LEU
528
A
LEU
143
14
1_555
A
LEU
542
A
LEU
157
14
1_555
A
SER
543
A
SER
158
14
1_555
A
VAL
546
A
VAL
161
14
1_555
18
P 21 21 2