0.015764 0.000000 0.000000 0.000000 0.015764 0.000000 0.000000 0.000000 0.006496 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 90.000 90.000 63.435 63.435 153.938 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a putative transcription regulator (R01717) from Sinorhizobium meliloti 1021 at 1.55 A resolution 10.2210/pdb3pjy/pdb pdb_00003pjy 100 1 FLAT COLLIMATING MIRROR, TOROID FOCUSING MIRROR CCD 2010-02-05 MARMOSAIC 325 mm CCD DOUBLE CRYSTAL MONOCHROMATOR SI(111) MAD M x-ray 1 0.91162 1.0 0.97980 1.0 0.97961 1.0 BL9-2 SSRL 0.91162,0.97980,0.97961 SYNCHROTRON SSRL BEAMLINE BL9-2 15471.558 Hypothetical signal peptide protein sequence database residues 29-163 2 man polymer 96.063 SULFATE ION 3 syn non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 18.015 water 278 nat water no yes GEVSYAKERVRLITASGRTHDLTVELAVDPSQREQGL(MSE)YRRQ(MSE)APDHG(MSE)LFDFGETRPV(MSE) (MSE)W(MSE)KNTYLPLD(MSE)LFIASDGTIRTIHENAVPHSEAIIDSREPVAYVLELNAGTVKRLGVSPGDRLEGAG LPATKRAN GEVSYAKERVRLITASGRTHDLTVELAVDPSQREQGLMYRRQMAPDHGMLFDFGETRPVMMWMKNTYLPLDMLFIASDGT IRTIHENAVPHSEAIIDSREPVAYVLELNAGTVKRLGVSPGDRLEGAGLPATKRAN A,B 405915 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample R01717, SMc00288 382 Sinorhizobium meliloti 562 Escherichia coli HK100 Plasmid SpeedET 1 2.50 50.85 DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND <I/SIGMA(I)> VAPOR DIFFUSION, SITTING DROP 4.2 0.20M (NH4)2SO4, 10.00% Glycerol, 20.00% PEG-300, 0.1M Phosphate Citrate pH 4.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI:Biology database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Structure summary Database references Derived calculations 1 0 2010-12-22 1 1 2011-07-13 1 2 2011-07-20 1 3 2023-02-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2010-11-10 REL REL SO4 SULFATE ION CL CHLORIDE ION HOH water THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED CONSTRUCT CONTAINS RESIDUES 29-163 OF THE FULL LENGTH PROTEIN. SO4 203 2 SO4 SO4 203 A SO4 204 2 SO4 SO4 204 A CL 201 3 CL CL 201 B CL 202 3 CL CL 202 B SO4 205 2 SO4 SO4 205 B HOH 206 4 HOH HOH 206 A HOH 209 4 HOH HOH 209 A HOH 211 4 HOH HOH 211 A HOH 212 4 HOH HOH 212 A HOH 215 4 HOH HOH 215 A HOH 216 4 HOH HOH 216 A HOH 218 4 HOH HOH 218 A HOH 223 4 HOH HOH 223 A HOH 224 4 HOH HOH 224 A HOH 226 4 HOH HOH 226 A HOH 228 4 HOH HOH 228 A HOH 229 4 HOH HOH 229 A HOH 231 4 HOH HOH 231 A HOH 232 4 HOH HOH 232 A HOH 234 4 HOH HOH 234 A HOH 236 4 HOH HOH 236 A HOH 238 4 HOH HOH 238 A HOH 241 4 HOH HOH 241 A HOH 242 4 HOH HOH 242 A HOH 243 4 HOH HOH 243 A HOH 244 4 HOH HOH 244 A HOH 245 4 HOH HOH 245 A HOH 249 4 HOH HOH 249 A HOH 251 4 HOH HOH 251 A HOH 252 4 HOH HOH 252 A HOH 254 4 HOH HOH 254 A HOH 255 4 HOH HOH 255 A HOH 258 4 HOH HOH 258 A HOH 259 4 HOH HOH 259 A HOH 260 4 HOH HOH 260 A HOH 262 4 HOH HOH 262 A HOH 263 4 HOH HOH 263 A HOH 264 4 HOH HOH 264 A HOH 265 4 HOH HOH 265 A HOH 267 4 HOH HOH 267 A HOH 269 4 HOH HOH 269 A HOH 270 4 HOH HOH 270 A HOH 273 4 HOH HOH 273 A HOH 275 4 HOH HOH 275 A HOH 276 4 HOH HOH 276 A HOH 277 4 HOH HOH 277 A HOH 278 4 HOH HOH 278 A HOH 280 4 HOH HOH 280 A HOH 281 4 HOH HOH 281 A HOH 282 4 HOH HOH 282 A HOH 286 4 HOH HOH 286 A HOH 288 4 HOH HOH 288 A HOH 290 4 HOH HOH 290 A HOH 291 4 HOH HOH 291 A HOH 292 4 HOH HOH 292 A HOH 294 4 HOH HOH 294 A HOH 295 4 HOH HOH 295 A HOH 296 4 HOH HOH 296 A HOH 297 4 HOH HOH 297 A HOH 300 4 HOH HOH 300 A HOH 303 4 HOH HOH 303 A HOH 304 4 HOH HOH 304 A HOH 307 4 HOH HOH 307 A HOH 309 4 HOH HOH 309 A HOH 310 4 HOH HOH 310 A HOH 317 4 HOH HOH 317 A HOH 320 4 HOH HOH 320 A HOH 322 4 HOH HOH 322 A HOH 323 4 HOH HOH 323 A HOH 324 4 HOH HOH 324 A HOH 325 4 HOH HOH 325 A HOH 326 4 HOH HOH 326 A HOH 329 4 HOH HOH 329 A HOH 331 4 HOH HOH 331 A HOH 333 4 HOH HOH 333 A HOH 334 4 HOH HOH 334 A HOH 336 4 HOH HOH 336 A HOH 345 4 HOH HOH 345 A HOH 350 4 HOH HOH 350 A HOH 352 4 HOH HOH 352 A HOH 355 4 HOH HOH 355 A HOH 356 4 HOH HOH 356 A HOH 358 4 HOH HOH 358 A HOH 359 4 HOH HOH 359 A HOH 362 4 HOH HOH 362 A HOH 364 4 HOH HOH 364 A HOH 372 4 HOH HOH 372 A HOH 373 4 HOH HOH 373 A HOH 374 4 HOH HOH 374 A HOH 377 4 HOH HOH 377 A HOH 378 4 HOH HOH 378 A HOH 380 4 HOH HOH 380 A HOH 382 4 HOH HOH 382 A HOH 383 4 HOH HOH 383 A HOH 384 4 HOH HOH 384 A HOH 385 4 HOH HOH 385 A HOH 387 4 HOH HOH 387 A HOH 388 4 HOH HOH 388 A HOH 389 4 HOH HOH 389 A HOH 390 4 HOH HOH 390 A HOH 391 4 HOH HOH 391 A HOH 393 4 HOH HOH 393 A HOH 397 4 HOH HOH 397 A HOH 399 4 HOH HOH 399 A HOH 400 4 HOH HOH 400 A HOH 402 4 HOH HOH 402 A HOH 406 4 HOH HOH 406 A HOH 408 4 HOH HOH 408 A HOH 409 4 HOH HOH 409 A HOH 410 4 HOH HOH 410 A HOH 412 4 HOH HOH 412 A HOH 413 4 HOH HOH 413 A HOH 415 4 HOH HOH 415 A HOH 420 4 HOH HOH 420 A HOH 422 4 HOH HOH 422 A HOH 423 4 HOH HOH 423 A HOH 425 4 HOH HOH 425 A HOH 426 4 HOH HOH 426 A HOH 431 4 HOH HOH 431 A HOH 432 4 HOH HOH 432 A HOH 433 4 HOH HOH 433 A HOH 435 4 HOH HOH 435 A HOH 438 4 HOH HOH 438 A HOH 439 4 HOH HOH 439 A HOH 440 4 HOH HOH 440 A HOH 441 4 HOH HOH 441 A HOH 442 4 HOH HOH 442 A HOH 444 4 HOH HOH 444 A HOH 445 4 HOH HOH 445 A HOH 446 4 HOH HOH 446 A HOH 447 4 HOH HOH 447 A HOH 449 4 HOH HOH 449 A HOH 450 4 HOH HOH 450 A HOH 451 4 HOH HOH 451 A HOH 452 4 HOH HOH 452 A HOH 455 4 HOH HOH 455 A HOH 458 4 HOH HOH 458 A HOH 461 4 HOH HOH 461 A HOH 462 4 HOH HOH 462 A HOH 464 4 HOH HOH 464 A HOH 465 4 HOH HOH 465 A HOH 466 4 HOH HOH 466 A HOH 467 4 HOH HOH 467 A HOH 468 4 HOH HOH 468 A HOH 471 4 HOH HOH 471 A HOH 473 4 HOH HOH 473 A HOH 474 4 HOH HOH 474 A HOH 475 4 HOH HOH 475 A HOH 477 4 HOH HOH 477 A HOH 479 4 HOH HOH 479 A HOH 480 4 HOH HOH 480 A HOH 481 4 HOH HOH 481 A HOH 482 4 HOH HOH 482 A HOH 483 4 HOH HOH 483 A HOH 207 4 HOH HOH 207 B HOH 208 4 HOH HOH 208 B HOH 210 4 HOH HOH 210 B HOH 213 4 HOH HOH 213 B HOH 214 4 HOH HOH 214 B HOH 217 4 HOH HOH 217 B HOH 219 4 HOH HOH 219 B HOH 220 4 HOH HOH 220 B HOH 221 4 HOH HOH 221 B HOH 222 4 HOH HOH 222 B HOH 225 4 HOH HOH 225 B HOH 227 4 HOH HOH 227 B HOH 230 4 HOH HOH 230 B HOH 233 4 HOH HOH 233 B HOH 235 4 HOH HOH 235 B HOH 237 4 HOH HOH 237 B HOH 239 4 HOH HOH 239 B HOH 240 4 HOH HOH 240 B HOH 246 4 HOH HOH 246 B HOH 247 4 HOH HOH 247 B HOH 248 4 HOH HOH 248 B HOH 250 4 HOH HOH 250 B HOH 253 4 HOH HOH 253 B HOH 256 4 HOH HOH 256 B HOH 257 4 HOH HOH 257 B HOH 261 4 HOH HOH 261 B HOH 266 4 HOH HOH 266 B HOH 268 4 HOH HOH 268 B HOH 271 4 HOH HOH 271 B HOH 272 4 HOH HOH 272 B HOH 274 4 HOH HOH 274 B HOH 279 4 HOH HOH 279 B HOH 283 4 HOH HOH 283 B HOH 284 4 HOH HOH 284 B HOH 285 4 HOH HOH 285 B HOH 287 4 HOH HOH 287 B HOH 289 4 HOH HOH 289 B HOH 293 4 HOH HOH 293 B HOH 298 4 HOH HOH 298 B HOH 299 4 HOH HOH 299 B HOH 301 4 HOH HOH 301 B HOH 302 4 HOH HOH 302 B HOH 305 4 HOH HOH 305 B HOH 306 4 HOH HOH 306 B HOH 308 4 HOH HOH 308 B HOH 311 4 HOH HOH 311 B HOH 312 4 HOH HOH 312 B HOH 313 4 HOH HOH 313 B HOH 314 4 HOH HOH 314 B HOH 315 4 HOH HOH 315 B HOH 316 4 HOH HOH 316 B HOH 318 4 HOH HOH 318 B HOH 319 4 HOH HOH 319 B HOH 321 4 HOH HOH 321 B HOH 327 4 HOH HOH 327 B HOH 328 4 HOH HOH 328 B HOH 330 4 HOH HOH 330 B HOH 332 4 HOH HOH 332 B HOH 335 4 HOH HOH 335 B HOH 337 4 HOH HOH 337 B HOH 338 4 HOH HOH 338 B HOH 339 4 HOH HOH 339 B HOH 340 4 HOH HOH 340 B HOH 341 4 HOH HOH 341 B HOH 342 4 HOH HOH 342 B HOH 343 4 HOH HOH 343 B HOH 344 4 HOH HOH 344 B HOH 346 4 HOH HOH 346 B HOH 347 4 HOH HOH 347 B HOH 348 4 HOH HOH 348 B HOH 349 4 HOH HOH 349 B HOH 351 4 HOH HOH 351 B HOH 353 4 HOH HOH 353 B HOH 354 4 HOH HOH 354 B HOH 357 4 HOH HOH 357 B HOH 360 4 HOH HOH 360 B HOH 361 4 HOH HOH 361 B HOH 363 4 HOH HOH 363 B HOH 365 4 HOH HOH 365 B HOH 366 4 HOH HOH 366 B HOH 367 4 HOH HOH 367 B HOH 368 4 HOH HOH 368 B HOH 369 4 HOH HOH 369 B HOH 370 4 HOH HOH 370 B HOH 371 4 HOH HOH 371 B HOH 375 4 HOH HOH 375 B HOH 376 4 HOH HOH 376 B HOH 379 4 HOH HOH 379 B HOH 381 4 HOH HOH 381 B HOH 386 4 HOH HOH 386 B HOH 392 4 HOH HOH 392 B HOH 394 4 HOH HOH 394 B HOH 395 4 HOH HOH 395 B HOH 396 4 HOH HOH 396 B HOH 398 4 HOH HOH 398 B HOH 401 4 HOH HOH 401 B HOH 403 4 HOH HOH 403 B HOH 404 4 HOH HOH 404 B HOH 405 4 HOH HOH 405 B HOH 407 4 HOH HOH 407 B HOH 411 4 HOH HOH 411 B HOH 414 4 HOH HOH 414 B HOH 416 4 HOH HOH 416 B HOH 417 4 HOH HOH 417 B HOH 418 4 HOH HOH 418 B HOH 419 4 HOH HOH 419 B HOH 421 4 HOH HOH 421 B HOH 424 4 HOH HOH 424 B HOH 427 4 HOH HOH 427 B HOH 428 4 HOH HOH 428 B HOH 429 4 HOH HOH 429 B HOH 430 4 HOH HOH 430 B HOH 434 4 HOH HOH 434 B HOH 436 4 HOH HOH 436 B HOH 437 4 HOH HOH 437 B HOH 443 4 HOH HOH 443 B HOH 448 4 HOH HOH 448 B HOH 453 4 HOH HOH 453 B HOH 454 4 HOH HOH 454 B HOH 456 4 HOH HOH 456 B HOH 457 4 HOH HOH 457 B HOH 459 4 HOH HOH 459 B HOH 460 4 HOH HOH 460 B HOH 463 4 HOH HOH 463 B HOH 469 4 HOH HOH 469 B HOH 470 4 HOH HOH 470 B HOH 472 4 HOH HOH 472 B HOH 476 4 HOH HOH 476 B HOH 478 4 HOH HOH 478 B GLY 0 n 1 GLY 0 A GLU 29 n 2 GLU 29 A VAL 30 n 3 VAL 30 A SER 31 n 4 SER 31 A TYR 32 n 5 TYR 32 A ALA 33 n 6 ALA 33 A LYS 34 n 7 LYS 34 A GLU 35 n 8 GLU 35 A ARG 36 n 9 ARG 36 A VAL 37 n 10 VAL 37 A ARG 38 n 11 ARG 38 A LEU 39 n 12 LEU 39 A ILE 40 n 13 ILE 40 A THR 41 n 14 THR 41 A ALA 42 n 15 ALA 42 A SER 43 n 16 SER 43 A GLY 44 n 17 GLY 44 A ARG 45 n 18 ARG 45 A THR 46 n 19 THR 46 A HIS 47 n 20 HIS 47 A ASP 48 n 21 ASP 48 A LEU 49 n 22 LEU 49 A THR 50 n 23 THR 50 A VAL 51 n 24 VAL 51 A GLU 52 n 25 GLU 52 A LEU 53 n 26 LEU 53 A ALA 54 n 27 ALA 54 A VAL 55 n 28 VAL 55 A ASP 56 n 29 ASP 56 A PRO 57 n 30 PRO 57 A SER 58 n 31 SER 58 A GLN 59 n 32 GLN 59 A ARG 60 n 33 ARG 60 A GLU 61 n 34 GLU 61 A GLN 62 n 35 GLN 62 A GLY 63 n 36 GLY 63 A LEU 64 n 37 LEU 64 A MSE 65 n 38 MSE 65 A TYR 66 n 39 TYR 66 A ARG 67 n 40 ARG 67 A ARG 68 n 41 ARG 68 A GLN 69 n 42 GLN 69 A MSE 70 n 43 MSE 70 A ALA 71 n 44 ALA 71 A PRO 72 n 45 PRO 72 A ASP 73 n 46 ASP 73 A HIS 74 n 47 HIS 74 A GLY 75 n 48 GLY 75 A MSE 76 n 49 MSE 76 A LEU 77 n 50 LEU 77 A PHE 78 n 51 PHE 78 A ASP 79 n 52 ASP 79 A PHE 80 n 53 PHE 80 A GLY 81 n 54 GLY 81 A GLU 82 n 55 GLU 82 A THR 83 n 56 THR 83 A ARG 84 n 57 ARG 84 A PRO 85 n 58 PRO 85 A VAL 86 n 59 VAL 86 A MSE 87 n 60 MSE 87 A MSE 88 n 61 MSE 88 A TRP 89 n 62 TRP 89 A MSE 90 n 63 MSE 90 A LYS 91 n 64 LYS 91 A ASN 92 n 65 ASN 92 A THR 93 n 66 THR 93 A TYR 94 n 67 TYR 94 A LEU 95 n 68 LEU 95 A PRO 96 n 69 PRO 96 A LEU 97 n 70 LEU 97 A ASP 98 n 71 ASP 98 A MSE 99 n 72 MSE 99 A LEU 100 n 73 LEU 100 A PHE 101 n 74 PHE 101 A ILE 102 n 75 ILE 102 A ALA 103 n 76 ALA 103 A SER 104 n 77 SER 104 A ASP 105 n 78 ASP 105 A GLY 106 n 79 GLY 106 A THR 107 n 80 THR 107 A ILE 108 n 81 ILE 108 A ARG 109 n 82 ARG 109 A THR 110 n 83 THR 110 A ILE 111 n 84 ILE 111 A HIS 112 n 85 HIS 112 A GLU 113 n 86 GLU 113 A ASN 114 n 87 ASN 114 A ALA 115 n 88 ALA 115 A VAL 116 n 89 VAL 116 A PRO 117 n 90 PRO 117 A HIS 118 n 91 HIS 118 A SER 119 n 92 SER 119 A GLU 120 n 93 GLU 120 A ALA 121 n 94 ALA 121 A ILE 122 n 95 ILE 122 A ILE 123 n 96 ILE 123 A ASP 124 n 97 ASP 124 A SER 125 n 98 SER 125 A ARG 126 n 99 ARG 126 A GLU 127 n 100 GLU 127 A PRO 128 n 101 PRO 128 A VAL 129 n 102 VAL 129 A ALA 130 n 103 ALA 130 A TYR 131 n 104 TYR 131 A VAL 132 n 105 VAL 132 A LEU 133 n 106 LEU 133 A GLU 134 n 107 GLU 134 A LEU 135 n 108 LEU 135 A ASN 136 n 109 ASN 136 A ALA 137 n 110 ALA 137 A GLY 138 n 111 GLY 138 A THR 139 n 112 THR 139 A VAL 140 n 113 VAL 140 A LYS 141 n 114 LYS 141 A ARG 142 n 115 ARG 142 A LEU 143 n 116 LEU 143 A GLY 144 n 117 GLY 144 A VAL 145 n 118 VAL 145 A SER 146 n 119 SER 146 A PRO 147 n 120 PRO 147 A GLY 148 n 121 GLY 148 A ASP 149 n 122 ASP 149 A ARG 150 n 123 ARG 150 A LEU 151 n 124 LEU 151 A GLU 152 n 125 GLU 152 A GLY 153 n 126 GLY 153 A ALA 154 n 127 ALA 154 A GLY 155 n 128 GLY 155 A LEU 156 n 129 LEU 156 A n 130 157 A n 131 158 A n 132 159 A n 133 160 A n 134 161 A n 135 162 A n 136 163 A GLY 0 n 1 GLY 0 B GLU 29 n 2 GLU 29 B VAL 30 n 3 VAL 30 B SER 31 n 4 SER 31 B TYR 32 n 5 TYR 32 B ALA 33 n 6 ALA 33 B LYS 34 n 7 LYS 34 B GLU 35 n 8 GLU 35 B ARG 36 n 9 ARG 36 B VAL 37 n 10 VAL 37 B ARG 38 n 11 ARG 38 B LEU 39 n 12 LEU 39 B ILE 40 n 13 ILE 40 B THR 41 n 14 THR 41 B ALA 42 n 15 ALA 42 B SER 43 n 16 SER 43 B GLY 44 n 17 GLY 44 B ARG 45 n 18 ARG 45 B THR 46 n 19 THR 46 B HIS 47 n 20 HIS 47 B ASP 48 n 21 ASP 48 B LEU 49 n 22 LEU 49 B THR 50 n 23 THR 50 B VAL 51 n 24 VAL 51 B GLU 52 n 25 GLU 52 B LEU 53 n 26 LEU 53 B ALA 54 n 27 ALA 54 B VAL 55 n 28 VAL 55 B ASP 56 n 29 ASP 56 B PRO 57 n 30 PRO 57 B SER 58 n 31 SER 58 B GLN 59 n 32 GLN 59 B ARG 60 n 33 ARG 60 B GLU 61 n 34 GLU 61 B GLN 62 n 35 GLN 62 B GLY 63 n 36 GLY 63 B LEU 64 n 37 LEU 64 B MSE 65 n 38 MSE 65 B TYR 66 n 39 TYR 66 B ARG 67 n 40 ARG 67 B ARG 68 n 41 ARG 68 B GLN 69 n 42 GLN 69 B MSE 70 n 43 MSE 70 B ALA 71 n 44 ALA 71 B PRO 72 n 45 PRO 72 B ASP 73 n 46 ASP 73 B HIS 74 n 47 HIS 74 B GLY 75 n 48 GLY 75 B MSE 76 n 49 MSE 76 B LEU 77 n 50 LEU 77 B PHE 78 n 51 PHE 78 B ASP 79 n 52 ASP 79 B PHE 80 n 53 PHE 80 B GLY 81 n 54 GLY 81 B GLU 82 n 55 GLU 82 B THR 83 n 56 THR 83 B ARG 84 n 57 ARG 84 B PRO 85 n 58 PRO 85 B VAL 86 n 59 VAL 86 B MSE 87 n 60 MSE 87 B MSE 88 n 61 MSE 88 B TRP 89 n 62 TRP 89 B MSE 90 n 63 MSE 90 B LYS 91 n 64 LYS 91 B ASN 92 n 65 ASN 92 B THR 93 n 66 THR 93 B TYR 94 n 67 TYR 94 B LEU 95 n 68 LEU 95 B PRO 96 n 69 PRO 96 B LEU 97 n 70 LEU 97 B ASP 98 n 71 ASP 98 B MSE 99 n 72 MSE 99 B LEU 100 n 73 LEU 100 B PHE 101 n 74 PHE 101 B ILE 102 n 75 ILE 102 B ALA 103 n 76 ALA 103 B SER 104 n 77 SER 104 B ASP 105 n 78 ASP 105 B GLY 106 n 79 GLY 106 B THR 107 n 80 THR 107 B ILE 108 n 81 ILE 108 B ARG 109 n 82 ARG 109 B THR 110 n 83 THR 110 B ILE 111 n 84 ILE 111 B HIS 112 n 85 HIS 112 B GLU 113 n 86 GLU 113 B ASN 114 n 87 ASN 114 B ALA 115 n 88 ALA 115 B VAL 116 n 89 VAL 116 B PRO 117 n 90 PRO 117 B HIS 118 n 91 HIS 118 B SER 119 n 92 SER 119 B GLU 120 n 93 GLU 120 B ALA 121 n 94 ALA 121 B ILE 122 n 95 ILE 122 B ILE 123 n 96 ILE 123 B ASP 124 n 97 ASP 124 B SER 125 n 98 SER 125 B ARG 126 n 99 ARG 126 B GLU 127 n 100 GLU 127 B PRO 128 n 101 PRO 128 B VAL 129 n 102 VAL 129 B ALA 130 n 103 ALA 130 B TYR 131 n 104 TYR 131 B VAL 132 n 105 VAL 132 B LEU 133 n 106 LEU 133 B GLU 134 n 107 GLU 134 B LEU 135 n 108 LEU 135 B ASN 136 n 109 ASN 136 B ALA 137 n 110 ALA 137 B GLY 138 n 111 GLY 138 B THR 139 n 112 THR 139 B VAL 140 n 113 VAL 140 B LYS 141 n 114 LYS 141 B ARG 142 n 115 ARG 142 B LEU 143 n 116 LEU 143 B GLY 144 n 117 GLY 144 B VAL 145 n 118 VAL 145 B SER 146 n 119 SER 146 B PRO 147 n 120 PRO 147 B GLY 148 n 121 GLY 148 B ASP 149 n 122 ASP 149 B ARG 150 n 123 ARG 150 B LEU 151 n 124 LEU 151 B GLU 152 n 125 GLU 152 B GLY 153 n 126 GLY 153 B ALA 154 n 127 ALA 154 B GLY 155 n 128 GLY 155 B LEU 156 n 129 LEU 156 B PRO 157 n 130 PRO 157 B n 131 158 B n 132 159 B n 133 160 B n 134 161 B n 135 162 B n 136 163 B 0.9636 0.0897 0.1409 1.4000 -0.4766 1.0002 -0.0210 -0.0601 -0.0343 0.0866 0.0084 0.0587 0.0230 -0.0676 0.0126 0.0431 -0.0170 0.0110 0.0516 0.0321 0.0438 refined 1.9385 21.2442 33.9390 X-RAY DIFFRACTION 1.5880 -0.3820 -0.3052 0.9807 0.0502 0.8434 0.0301 -0.0059 0.0335 0.0944 0.0117 0.0352 -0.0386 -0.0198 -0.0418 0.0520 0.0028 0.0256 0.0033 -0.0016 0.0251 refined 17.3249 7.9791 59.2087 X-RAY DIFFRACTION A 0 A 156 X-RAY DIFFRACTION 1 B 0 B 157 X-RAY DIFFRACTION 2 author_defined_assembly 2 dimeric A MSE 65 SELENOMETHIONINE A MSE 38 MET A MSE 70 SELENOMETHIONINE A MSE 43 MET A MSE 76 SELENOMETHIONINE A MSE 49 MET A MSE 87 SELENOMETHIONINE A MSE 60 MET A MSE 88 SELENOMETHIONINE A MSE 61 MET A MSE 90 SELENOMETHIONINE A MSE 63 MET A MSE 99 SELENOMETHIONINE A MSE 72 MET B MSE 65 SELENOMETHIONINE B MSE 38 MET B MSE 70 SELENOMETHIONINE B MSE 43 MET B MSE 76 SELENOMETHIONINE B MSE 49 MET B MSE 87 SELENOMETHIONINE B MSE 60 MET B MSE 88 SELENOMETHIONINE B MSE 61 MET B MSE 90 SELENOMETHIONINE B MSE 63 MET B MSE 99 SELENOMETHIONINE B MSE 72 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ALA 115 A O ALA 88 A N LEU 97 A N LEU 70 A N LEU 100 A N LEU 73 A O LEU 133 A O LEU 106 A O VAL 132 A O VAL 105 A N PHE 78 A N PHE 51 A O ASP 79 A O ASP 52 A N ALA 54 A N ALA 27 A O LEU 53 A O LEU 26 A N ALA 33 A N ALA 6 A N ILE 40 A N ILE 13 A O ARG 150 A O ARG 123 A N MSE 88 A N MSE 61 A O ILE 123 A O ILE 96 B O THR 110 B O THR 83 B N PHE 101 B N PHE 74 B N ILE 102 B N ILE 75 B O TYR 131 B O TYR 104 B O VAL 132 B O VAL 105 B N PHE 78 B N PHE 51 B O ASP 79 B O ASP 52 B N ALA 54 B N ALA 27 B O LEU 53 B O LEU 26 B N ALA 33 B N ALA 6 B N ILE 40 B N ILE 13 B O ARG 150 B O ARG 123 B N MSE 88 B N MSE 61 B O ILE 123 B O ILE 96 1 B CD GLN 69 B CD GLN 42 1 Y 1 B OE1 GLN 69 B OE1 GLN 42 1 Y 1 B NE2 GLN 69 B NE2 GLN 42 1 Y 1 B CG ARG 126 B CG ARG 99 1 Y 1 B CD ARG 126 B CD ARG 99 1 Y 1 B NE ARG 126 B NE ARG 99 1 Y 1 B CZ ARG 126 B CZ ARG 99 1 Y 1 B NH1 ARG 126 B NH1 ARG 99 1 Y 1 B NH2 ARG 126 B NH2 ARG 99 1 Y 1 B CG GLU 152 B CG GLU 125 1 Y 1 B CD GLU 152 B CD GLU 125 1 Y 1 B OE1 GLU 152 B OE1 GLU 125 1 Y 1 B OE2 GLU 152 B OE2 GLU 125 1 Y 1 A PRO 157 A PRO 130 1 Y 1 A ALA 158 A ALA 131 1 Y 1 A THR 159 A THR 132 1 Y 1 A LYS 160 A LYS 133 1 Y 1 A ARG 161 A ARG 134 1 Y 1 A ALA 162 A ALA 135 1 Y 1 A ASN 163 A ASN 136 1 Y 1 B ALA 158 B ALA 131 1 Y 1 B THR 159 B THR 132 1 Y 1 B LYS 160 B LYS 133 1 Y 1 B ARG 161 B ARG 134 1 Y 1 B ALA 162 B ALA 135 1 Y 1 B ASN 163 B ASN 136 1 Y 1 A LEU 64 B -98.75 31.57 1 A TYR 66 78.11 -31.89 1 A ASN 92 58.64 19.21 1 A ARG 126 73.49 -65.50 1 A ARG 126 73.49 -66.15 1 B TYR 66 68.58 -18.39 1 B MSE 70 -170.43 130.52 1 B HIS 118 72.01 -4.77 1 B ARG 126 76.21 -3.13 73.000 24.0432 11.610 0.0400 0.0000 0.0000 0.0400 0.0000 -0.0900 0.9710 0.9540 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. SULPHATE AND CHLORIDE IONS FROM THE CRYSTALLIZATION AND PROTEIN BUFFERS ARE MODELED IN THE STRUCTURE. 0.1903 0.1611 0.1626 1.5500 29.208 2298 45642 5.0000 98.0900 1.000 0.250 2.3810 0.0420 RANDOM 1 THROUGHOUT 0.000 MAD 0.070 0.0730 0.8000 0.8000 1.4000 MAXIMUM LIKELIHOOD WITH PHASES MASK 1.5500 29.208 278 2303 17 0 2008 0.018 0.021 2294 0.001 0.020 1571 1.600 1.984 3136 0.909 3.000 3823 6.972 5.000 302 36.631 22.981 104 11.586 15.000 400 12.479 15.000 24 0.096 0.200 341 0.008 0.021 2652 0.003 0.020 470 1.676 3.000 1434 0.491 3.000 576 2.672 5.000 2339 4.354 8.000 860 6.794 11.000 797 0.2860 0.2820 1.5900 159 3143 3302 20 98.3300 20.821 1.55 29.208 3PJY 45713 -3.000 0.039 1 13.560 4.797 96.000 0.576 1.550 1.610 1.7 22767 9108 1 97.200 0.415 1.610 1.670 2.3 20232 8035 1 99.500 0.305 1.670 1.750 3.1 22992 9060 1 99.400 0.193 1.750 1.840 4.9 21327 8383 1 99.200 0.131 1.840 1.950 7.1 21084 8198 1 98.400 0.083 1.950 2.100 11.1 22162 8526 1 97.500 0.057 2.100 2.310 15.8 22032 8345 1 95.900 0.042 2.310 2.650 21.0 22705 8427 1 94.300 0.028 2.650 3.330 30.4 21877 7908 1 91.300 0.020 3.330 29.208 42.7 22081 7748 1 87.900 phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.5.0110 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data reduction XDS phasing SHELXD phasing autoSHARP Crystal structure of a putative transcription regulator (R01717) from Sinorhizobium meliloti 1021 at 1.55 A resolution 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 2 N N 4 N N 4 N N A ASP 56 A ASP 29 HELX_P A GLY 63 A GLY 36 1 1 8 A GLY 138 A GLY 111 HELX_P A GLY 144 A GLY 117 1 2 7 B ASP 56 B ASP 29 HELX_P B GLY 63 B GLY 36 1 3 8 B GLY 138 B GLY 111 HELX_P B GLY 144 B GLY 117 1 4 7 covale 1.332 both A A LEU 64 A C LEU 37 1_555 A MSE 65 A N MSE 38 1_555 covale 1.318 both B A LEU 64 A C LEU 37 1_555 A MSE 65 A N MSE 38 1_555 covale 1.322 both A MSE 65 A C MSE 38 1_555 A TYR 66 A N TYR 39 1_555 covale 1.327 both A GLN 69 A C GLN 42 1_555 A MSE 70 A N MSE 43 1_555 covale 1.330 both A MSE 70 A C MSE 43 1_555 A ALA 71 A N ALA 44 1_555 covale 1.326 both A A GLY 75 A C GLY 48 1_555 A MSE 76 A N MSE 49 1_555 covale 1.329 both B A GLY 75 A C GLY 48 1_555 A MSE 76 A N MSE 49 1_555 covale 1.328 both A A MSE 76 A C MSE 49 1_555 A LEU 77 A N LEU 50 1_555 covale 1.336 both B A MSE 76 A C MSE 49 1_555 A LEU 77 A N LEU 50 1_555 covale 1.333 both A VAL 86 A C VAL 59 1_555 A MSE 87 A N MSE 60 1_555 covale 1.337 both A MSE 87 A C MSE 60 1_555 A MSE 88 A N MSE 61 1_555 covale 1.315 both A MSE 88 A C MSE 61 1_555 A TRP 89 A N TRP 62 1_555 covale 1.328 both A TRP 89 A C TRP 62 1_555 A MSE 90 A N MSE 63 1_555 covale 1.348 both A MSE 90 A C MSE 63 1_555 A LYS 91 A N LYS 64 1_555 covale 1.337 both A ASP 98 A C ASP 71 1_555 A MSE 99 A N MSE 72 1_555 covale 1.334 both A MSE 99 A C MSE 72 1_555 A LEU 100 A N LEU 73 1_555 covale 1.322 both B LEU 64 B C LEU 37 1_555 B MSE 65 B N MSE 38 1_555 covale 1.324 both B MSE 65 B C MSE 38 1_555 B TYR 66 B N TYR 39 1_555 covale 1.327 both A B GLN 69 B C GLN 42 1_555 B MSE 70 B N MSE 43 1_555 covale 1.343 both B B GLN 69 B C GLN 42 1_555 B MSE 70 B N MSE 43 1_555 covale 1.335 both B MSE 70 B C MSE 43 1_555 B ALA 71 B N ALA 44 1_555 covale 1.322 both B GLY 75 B C GLY 48 1_555 B MSE 76 B N MSE 49 1_555 covale 1.326 both B MSE 76 B C MSE 49 1_555 B LEU 77 B N LEU 50 1_555 covale 1.308 both B VAL 86 B C VAL 59 1_555 B MSE 87 B N MSE 60 1_555 covale 1.345 both B MSE 87 B C MSE 60 1_555 B MSE 88 B N MSE 61 1_555 covale 1.318 both B MSE 88 B C MSE 61 1_555 B TRP 89 B N TRP 62 1_555 covale 1.333 both B TRP 89 B C TRP 62 1_555 B MSE 90 B N MSE 63 1_555 covale 1.320 both B MSE 90 B C MSE 63 1_555 B LYS 91 B N LYS 64 1_555 covale 1.329 both B ASP 98 B C ASP 71 1_555 B MSE 99 B N MSE 72 1_555 covale 1.328 both B MSE 99 B C MSE 72 1_555 B LEU 100 B N LEU 73 1_555 TRANSCRIPTION REGULATOR DUF192 FAMILY PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, TRANSCRIPTION REGULATOR B LEU 156 B LEU 129 1 B PRO 157 B PRO 130 9.01 Q92PM3_RHIME UNP 1 29 Q92PM3 EVSYAKERVRLITASGRTHDLTVELAVDPSQREQGLMYRRQMAPDHGMLFDFGETRPVMMWMKNTYLPLDMLFIASDGTI RTIHENAVPHSEAIIDSREPVAYVLELNAGTVKRLGVSPGDRLEGAGLPATKRAN 29 163 3PJY 29 163 Q92PM3 A 1 2 136 29 163 3PJY 29 163 Q92PM3 B 1 2 136 1 expression tag GLY 0 3PJY A Q92PM3 UNP 1 2 expression tag GLY 0 3PJY B Q92PM3 UNP 1 7 2 7 2 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A ILE 108 A ILE 81 A ALA 115 A ALA 88 A LEU 97 A LEU 70 A ILE 102 A ILE 75 A VAL 129 A VAL 102 A ASN 136 A ASN 109 A HIS 74 A HIS 47 A ARG 84 A ARG 57 A THR 46 A THR 19 A ALA 54 A ALA 27 A ALA 33 A ALA 6 A ILE 40 A ILE 13 A ARG 150 A ARG 123 A GLY 153 A GLY 126 A MSE 87 A MSE 60 A MSE 88 A MSE 61 A ILE 123 A ILE 96 A ASP 124 A ASP 97 B ILE 108 B ILE 81 B ALA 115 B ALA 88 B LEU 97 B LEU 70 B ILE 102 B ILE 75 B VAL 129 B VAL 102 B ASN 136 B ASN 109 B HIS 74 B HIS 47 B ARG 84 B ARG 57 B THR 46 B THR 19 B ALA 54 B ALA 27 B ALA 33 B ALA 6 B ILE 40 B ILE 13 B ARG 150 B ARG 123 B GLU 152 B GLU 125 B MSE 87 B MSE 60 B MSE 88 B MSE 61 B ILE 123 B ILE 96 B ASP 124 B ASP 97 BINDING SITE FOR RESIDUE SO4 A 203 A SO4 203 Software 4 BINDING SITE FOR RESIDUE SO4 A 204 A SO4 204 Software 11 BINDING SITE FOR RESIDUE CL B 201 B CL 201 Software 4 BINDING SITE FOR RESIDUE CL B 202 B CL 202 Software 5 BINDING SITE FOR RESIDUE SO4 B 205 B SO4 205 Software 7 A HIS 112 A HIS 85 4 1_555 A ARG 126 A ARG 99 4 1_555 A HOH 362 H HOH 4 1_555 A HOH 406 H HOH 4 1_555 A ARG 67 A ARG 40 11 1_555 A GLN 69 A GLN 42 11 1_555 A MSE 70 A MSE 43 11 1_555 A ALA 71 A ALA 44 11 1_555 A HIS 74 A HIS 47 11 1_555 A HOH 388 H HOH 11 1_555 A HOH 425 H HOH 11 1_555 A HOH 426 H HOH 11 1_555 B ARG 84 B ARG 57 11 5_555 B HOH 338 I HOH 11 1_555 B HOH 368 I HOH 11 1_555 A HOH 231 H HOH 4 8_655 A HOH 359 H HOH 4 8_655 B ARG 68 B ARG 41 4 1_555 B GLN 69 B GLN 42 4 1_555 A HOH 385 H HOH 5 4_455 B SER 43 B SER 16 5 1_555 B ARG 45 B ARG 18 5 1_555 B SER 58 B SER 31 5 5_555 B HOH 233 I HOH 5 1_555 A ARG 67 A ARG 40 7 5_545 A ARG 68 A ARG 41 7 5_545 A GLN 69 A GLN 42 7 5_545 A HOH 260 H HOH 7 5_545 B ARG 84 B ARG 57 7 1_555 B PRO 85 B PRO 58 7 1_555 B HOH 341 I HOH 7 1_555 96 P 43 21 2