0.018293
0.010562
0.000000
0.000000
0.021123
0.000000
0.000000
0.000000
0.008931
0.00000
0.00000
0.00000
Tziridis, A.
Neumann, P.
Kolenko, P.
Stubbs, M.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
54.665
54.665
111.969
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C23 H32 N8 O4 S
516.616
N~2~-(benzylsulfonyl)-D-arginyl-N-(4-carbamimidoylbenzyl)glycinamide
peptide-like
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
CL
N
76
N
N
N
77
R
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
S
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
C
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
Y
158
N
C
Y
159
N
N
Y
160
N
C
Y
161
N
C
Y
162
N
N
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
N
N
178
S
C
N
179
N
C
N
180
N
O
N
181
S
C
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
N
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
N
C
N
251
N
C
N
252
N
S
N
253
N
C
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
C
N
290
N
S
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
N
297
N
O
N
298
N
O
N
299
N
N
N
300
R
C
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
N
N
305
N
C
N
306
N
N
N
307
N
N
N
308
N
C
N
309
N
O
N
310
N
N
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
N
N
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
N
320
N
C
N
321
N
N
N
322
N
N
Y
323
N
C
Y
324
N
C
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
N
362
N
C
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
O
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
S
N
389
N
O
N
390
N
O
N
391
N
O
N
392
N
O
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
R
C
N
398
N
O
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
N
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
N
448
N
O
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
N
466
N
C
N
467
N
C
N
468
N
O
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
Y
273
N
doub
Y
274
N
sing
N
275
N
sing
Y
276
N
doub
N
277
N
sing
Y
278
N
sing
N
279
N
sing
Y
280
N
doub
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
Y
310
N
doub
Y
311
N
sing
Y
312
N
sing
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
sing
N
317
N
sing
Y
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
doub
Y
408
N
sing
Y
409
N
sing
N
410
N
sing
Y
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
Y
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
GE
Biol.Chem.
1431-6730
395
891
903
10.1515/hsz-2014-0158
25003390
Correlating structure and ligand affinity in drug discovery: a cautionary tale involving second shell residues.
2014
10.2210/pdb3pmj/pdb
pdb_00003pmj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
MARMOSAIC 225 mm CCD
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.91841
1.0
14.1
BESSY
0.91841
SYNCHROTRON
BESSY BEAMLINE 14.1
23376.363
Cationic trypsin
3.4.21.4
N102E, L104Y, Y175S, P176S, G177F, Q178Y, S195A, V228I
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
516.616
N~2~-(benzylsulfonyl)-D-arginyl-N-(4-carbamimidoylbenzyl)glycinamide
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
96.063
SULFATE ION
4
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
364
nat
water
Beta-trypsin, Alpha-trypsin chain 1, Alpha-trypsin chain 2
no
no
IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSET
YNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNM
FCAGYLEGGKDACQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTIASN
IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSET
YNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNM
FCAGYLEGGKDACQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTIASN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bovine,cow,domestic cattle,domestic cow
sample
9913
Bos taurus
562
Escherichia coli
PLASMID
pET3a
1
2.07
40.46
VAPOR DIFFUSION, HANGING DROP
7.0
30% PEG 8000, 0.1M IMIDAZOLE, 0.3M AMMONIUM SULFATE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
repository
Initial release
Other
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-11-23
1
1
2012-12-12
1
2
2014-07-16
1
3
2014-09-24
1
4
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2010-11-17
REL
REL
CA
CALCIUM ION
PMJ
N~2~-(benzylsulfonyl)-D-arginyl-N-(4-carbamimidoylbenzyl)glycinamide
GOL
GLYCEROL
SO4
SULFATE ION
CL
CHLORIDE ION
HOH
water
1V2K
PDB ENTRY 1V2K
PDB
experimental model
Inhibitor
N~2~-(BENZYLSULFONYL)-D-ARGINYL-N-(4-CARBAMIMIDOYLBENZYL)GLYCINAMIDE
Peptide-like
CA
480
2
CA
CA
301
A
PMJ
481
3
PMJ
PMJ
302
A
GOL
482
4
GOL
GOL
303
A
SO4
483
5
SO4
SO4
304
A
SO4
484
5
SO4
SO4
305
A
SO4
485
5
SO4
SO4
306
A
SO4
486
5
SO4
SO4
307
A
CL
487
6
CL
CL
308
A
HOH
1000
7
HOH
HOH
1000
A
HOH
1001
7
HOH
HOH
1001
A
HOH
1002
7
HOH
HOH
1002
A
HOH
1003
7
HOH
HOH
1003
A
HOH
1004
7
HOH
HOH
1004
A
HOH
1005
7
HOH
HOH
1005
A
HOH
1006
7
HOH
HOH
1006
A
HOH
1007
7
HOH
HOH
1007
A
HOH
1008
7
HOH
HOH
1008
A
HOH
1009
7
HOH
HOH
1009
A
HOH
1010
7
HOH
HOH
1010
A
HOH
1011
7
HOH
HOH
1011
A
HOH
1012
7
HOH
HOH
1012
A
HOH
1013
7
HOH
HOH
1013
A
HOH
1014
7
HOH
HOH
1014
A
HOH
1015
7
HOH
HOH
1015
A
HOH
1016
7
HOH
HOH
1016
A
HOH
1017
7
HOH
HOH
1017
A
HOH
1018
7
HOH
HOH
1018
A
HOH
1019
7
HOH
HOH
1019
A
HOH
1020
7
HOH
HOH
1020
A
HOH
1021
7
HOH
HOH
1021
A
HOH
1022
7
HOH
HOH
1022
A
HOH
1023
7
HOH
HOH
1023
A
HOH
1024
7
HOH
HOH
1024
A
HOH
1025
7
HOH
HOH
1025
A
HOH
1026
7
HOH
HOH
1026
A
HOH
1027
7
HOH
HOH
1027
A
HOH
1028
7
HOH
HOH
1028
A
HOH
1029
7
HOH
HOH
1029
A
HOH
1030
7
HOH
HOH
1030
A
HOH
1031
7
HOH
HOH
1031
A
HOH
1032
7
HOH
HOH
1032
A
HOH
1033
7
HOH
HOH
1033
A
HOH
1034
7
HOH
HOH
1034
A
HOH
1035
7
HOH
HOH
1035
A
HOH
1036
7
HOH
HOH
1036
A
HOH
1037
7
HOH
HOH
1037
A
HOH
1038
7
HOH
HOH
1038
A
HOH
1039
7
HOH
HOH
1039
A
HOH
1040
7
HOH
HOH
1040
A
HOH
1041
7
HOH
HOH
1041
A
HOH
1042
7
HOH
HOH
1042
A
HOH
1043
7
HOH
HOH
1043
A
HOH
1044
7
HOH
HOH
1044
A
HOH
1045
7
HOH
HOH
1045
A
HOH
1046
7
HOH
HOH
1046
A
HOH
1047
7
HOH
HOH
1047
A
HOH
1048
7
HOH
HOH
1048
A
HOH
1049
7
HOH
HOH
1049
A
HOH
1050
7
HOH
HOH
1050
A
HOH
1051
7
HOH
HOH
1051
A
HOH
1052
7
HOH
HOH
1052
A
HOH
1053
7
HOH
HOH
1053
A
HOH
1054
7
HOH
HOH
1054
A
HOH
1055
7
HOH
HOH
1055
A
HOH
1056
7
HOH
HOH
1056
A
HOH
1057
7
HOH
HOH
1057
A
HOH
1058
7
HOH
HOH
1058
A
HOH
1059
7
HOH
HOH
1059
A
HOH
1060
7
HOH
HOH
1060
A
HOH
1061
7
HOH
HOH
1061
A
HOH
1062
7
HOH
HOH
1062
A
HOH
1063
7
HOH
HOH
1063
A
HOH
1064
7
HOH
HOH
1064
A
HOH
1065
7
HOH
HOH
1065
A
HOH
1066
7
HOH
HOH
1066
A
HOH
1067
7
HOH
HOH
1067
A
HOH
1068
7
HOH
HOH
1068
A
HOH
1069
7
HOH
HOH
1069
A
HOH
1070
7
HOH
HOH
1070
A
HOH
1071
7
HOH
HOH
1071
A
HOH
1072
7
HOH
HOH
1072
A
HOH
1073
7
HOH
HOH
1073
A
HOH
1074
7
HOH
HOH
1074
A
HOH
1075
7
HOH
HOH
1075
A
HOH
1076
7
HOH
HOH
1076
A
HOH
1077
7
HOH
HOH
1077
A
HOH
1078
7
HOH
HOH
1078
A
HOH
1079
7
HOH
HOH
1079
A
HOH
1080
7
HOH
HOH
1080
A
HOH
1081
7
HOH
HOH
1081
A
HOH
1082
7
HOH
HOH
1082
A
HOH
1083
7
HOH
HOH
1083
A
HOH
1084
7
HOH
HOH
1084
A
HOH
1085
7
HOH
HOH
1085
A
HOH
1086
7
HOH
HOH
1086
A
HOH
1087
7
HOH
HOH
1087
A
HOH
1088
7
HOH
HOH
1088
A
HOH
1089
7
HOH
HOH
1089
A
HOH
1090
7
HOH
HOH
1090
A
HOH
1091
7
HOH
HOH
1091
A
HOH
1092
7
HOH
HOH
1092
A
HOH
1093
7
HOH
HOH
1093
A
HOH
1094
7
HOH
HOH
1094
A
HOH
1095
7
HOH
HOH
1095
A
HOH
1096
7
HOH
HOH
1096
A
HOH
1097
7
HOH
HOH
1097
A
HOH
1098
7
HOH
HOH
1098
A
HOH
1099
7
HOH
HOH
1099
A
HOH
1100
7
HOH
HOH
1100
A
HOH
1101
7
HOH
HOH
1101
A
HOH
1102
7
HOH
HOH
1102
A
HOH
1103
7
HOH
HOH
1103
A
HOH
1104
7
HOH
HOH
1104
A
HOH
1105
7
HOH
HOH
1105
A
HOH
1106
7
HOH
HOH
1106
A
HOH
1107
7
HOH
HOH
1107
A
HOH
1108
7
HOH
HOH
1108
A
HOH
1109
7
HOH
HOH
1109
A
HOH
1110
7
HOH
HOH
1110
A
HOH
1111
7
HOH
HOH
1111
A
HOH
1112
7
HOH
HOH
1112
A
HOH
1113
7
HOH
HOH
1113
A
HOH
1114
7
HOH
HOH
1114
A
HOH
1115
7
HOH
HOH
1115
A
HOH
1116
7
HOH
HOH
1116
A
HOH
1117
7
HOH
HOH
1117
A
HOH
1118
7
HOH
HOH
1118
A
HOH
1119
7
HOH
HOH
1119
A
HOH
1120
7
HOH
HOH
1120
A
HOH
1121
7
HOH
HOH
1121
A
HOH
1122
7
HOH
HOH
1122
A
HOH
1123
7
HOH
HOH
1123
A
HOH
1124
7
HOH
HOH
1124
A
HOH
1125
7
HOH
HOH
1125
A
HOH
1126
7
HOH
HOH
1126
A
HOH
1127
7
HOH
HOH
1127
A
HOH
1128
7
HOH
HOH
1128
A
HOH
1129
7
HOH
HOH
1129
A
HOH
1130
7
HOH
HOH
1130
A
HOH
1131
7
HOH
HOH
1131
A
HOH
1132
7
HOH
HOH
1132
A
HOH
1133
7
HOH
HOH
1133
A
HOH
1134
7
HOH
HOH
1134
A
HOH
1135
7
HOH
HOH
1135
A
HOH
1136
7
HOH
HOH
1136
A
HOH
1137
7
HOH
HOH
1137
A
HOH
1138
7
HOH
HOH
1138
A
HOH
1139
7
HOH
HOH
1139
A
HOH
1140
7
HOH
HOH
1140
A
HOH
1141
7
HOH
HOH
1141
A
HOH
1142
7
HOH
HOH
1142
A
HOH
1143
7
HOH
HOH
1143
A
HOH
1144
7
HOH
HOH
1144
A
HOH
1145
7
HOH
HOH
1145
A
HOH
1146
7
HOH
HOH
1146
A
HOH
1147
7
HOH
HOH
1147
A
HOH
1148
7
HOH
HOH
1148
A
HOH
1149
7
HOH
HOH
1149
A
HOH
1150
7
HOH
HOH
1150
A
HOH
1151
7
HOH
HOH
1151
A
HOH
1152
7
HOH
HOH
1152
A
HOH
1153
7
HOH
HOH
1153
A
HOH
1154
7
HOH
HOH
1154
A
HOH
1155
7
HOH
HOH
1155
A
HOH
1156
7
HOH
HOH
1156
A
HOH
1157
7
HOH
HOH
1157
A
HOH
1158
7
HOH
HOH
1158
A
HOH
1159
7
HOH
HOH
1159
A
HOH
1160
7
HOH
HOH
1160
A
HOH
1161
7
HOH
HOH
1161
A
HOH
1162
7
HOH
HOH
1162
A
HOH
1163
7
HOH
HOH
1163
A
HOH
1164
7
HOH
HOH
1164
A
HOH
1165
7
HOH
HOH
1165
A
HOH
1166
7
HOH
HOH
1166
A
HOH
1167
7
HOH
HOH
1167
A
HOH
1168
7
HOH
HOH
1168
A
HOH
1169
7
HOH
HOH
1169
A
HOH
1170
7
HOH
HOH
1170
A
HOH
1171
7
HOH
HOH
1171
A
HOH
1172
7
HOH
HOH
1172
A
HOH
1173
7
HOH
HOH
1173
A
HOH
1174
7
HOH
HOH
1174
A
HOH
1175
7
HOH
HOH
1175
A
HOH
1176
7
HOH
HOH
1176
A
HOH
1177
7
HOH
HOH
1177
A
HOH
1178
7
HOH
HOH
1178
A
HOH
1179
7
HOH
HOH
1179
A
HOH
1180
7
HOH
HOH
1180
A
HOH
1181
7
HOH
HOH
1181
A
HOH
1182
7
HOH
HOH
1182
A
HOH
1183
7
HOH
HOH
1183
A
HOH
1184
7
HOH
HOH
1184
A
HOH
1185
7
HOH
HOH
1185
A
HOH
1186
7
HOH
HOH
1186
A
HOH
1187
7
HOH
HOH
1187
A
HOH
1188
7
HOH
HOH
1188
A
HOH
1189
7
HOH
HOH
1189
A
HOH
1190
7
HOH
HOH
1190
A
HOH
1191
7
HOH
HOH
1191
A
HOH
1192
7
HOH
HOH
1192
A
HOH
1193
7
HOH
HOH
1193
A
HOH
1194
7
HOH
HOH
1194
A
HOH
1195
7
HOH
HOH
1195
A
HOH
1196
7
HOH
HOH
1196
A
HOH
1197
7
HOH
HOH
1197
A
HOH
1198
7
HOH
HOH
1198
A
HOH
1199
7
HOH
HOH
1199
A
HOH
1200
7
HOH
HOH
1200
A
HOH
1201
7
HOH
HOH
1201
A
HOH
1202
7
HOH
HOH
1202
A
HOH
1203
7
HOH
HOH
1203
A
HOH
1204
7
HOH
HOH
1204
A
HOH
1205
7
HOH
HOH
1205
A
HOH
1206
7
HOH
HOH
1206
A
HOH
1207
7
HOH
HOH
1207
A
HOH
1208
7
HOH
HOH
1208
A
HOH
1209
7
HOH
HOH
1209
A
HOH
1210
7
HOH
HOH
1210
A
HOH
1211
7
HOH
HOH
1211
A
HOH
1212
7
HOH
HOH
1212
A
HOH
1213
7
HOH
HOH
1213
A
HOH
1214
7
HOH
HOH
1214
A
HOH
1215
7
HOH
HOH
1215
A
HOH
1216
7
HOH
HOH
1216
A
HOH
1217
7
HOH
HOH
1217
A
HOH
1218
7
HOH
HOH
1218
A
HOH
1219
7
HOH
HOH
1219
A
HOH
1220
7
HOH
HOH
1220
A
HOH
1221
7
HOH
HOH
1221
A
HOH
1222
7
HOH
HOH
1222
A
HOH
1223
7
HOH
HOH
1223
A
HOH
1224
7
HOH
HOH
1224
A
HOH
1225
7
HOH
HOH
1225
A
HOH
1226
7
HOH
HOH
1226
A
HOH
1227
7
HOH
HOH
1227
A
HOH
1228
7
HOH
HOH
1228
A
HOH
1229
7
HOH
HOH
1229
A
HOH
1230
7
HOH
HOH
1230
A
HOH
1231
7
HOH
HOH
1231
A
HOH
1232
7
HOH
HOH
1232
A
HOH
1233
7
HOH
HOH
1233
A
HOH
1234
7
HOH
HOH
1234
A
HOH
1235
7
HOH
HOH
1235
A
HOH
1236
7
HOH
HOH
1236
A
HOH
1237
7
HOH
HOH
1237
A
HOH
1238
7
HOH
HOH
1238
A
HOH
1239
7
HOH
HOH
1239
A
HOH
1240
7
HOH
HOH
1240
A
HOH
1241
7
HOH
HOH
1241
A
HOH
1242
7
HOH
HOH
1242
A
HOH
1243
7
HOH
HOH
1243
A
HOH
1244
7
HOH
HOH
1244
A
HOH
1245
7
HOH
HOH
1245
A
HOH
1246
7
HOH
HOH
1246
A
HOH
1247
7
HOH
HOH
1247
A
HOH
1248
7
HOH
HOH
1248
A
HOH
1249
7
HOH
HOH
1249
A
HOH
1250
7
HOH
HOH
1250
A
HOH
1251
7
HOH
HOH
1251
A
HOH
1252
7
HOH
HOH
1252
A
HOH
1253
7
HOH
HOH
1253
A
HOH
1254
7
HOH
HOH
1254
A
HOH
1255
7
HOH
HOH
1255
A
HOH
1256
7
HOH
HOH
1256
A
HOH
1257
7
HOH
HOH
1257
A
HOH
1258
7
HOH
HOH
1258
A
HOH
1259
7
HOH
HOH
1259
A
HOH
1260
7
HOH
HOH
1260
A
HOH
1261
7
HOH
HOH
1261
A
HOH
1262
7
HOH
HOH
1262
A
HOH
1263
7
HOH
HOH
1263
A
HOH
1264
7
HOH
HOH
1264
A
HOH
1265
7
HOH
HOH
1265
A
HOH
1266
7
HOH
HOH
1266
A
HOH
1267
7
HOH
HOH
1267
A
HOH
1268
7
HOH
HOH
1268
A
HOH
1269
7
HOH
HOH
1269
A
HOH
1270
7
HOH
HOH
1270
A
HOH
1271
7
HOH
HOH
1271
A
HOH
1272
7
HOH
HOH
1272
A
HOH
1273
7
HOH
HOH
1273
A
HOH
1274
7
HOH
HOH
1274
A
HOH
1275
7
HOH
HOH
1275
A
HOH
1276
7
HOH
HOH
1276
A
HOH
1277
7
HOH
HOH
1277
A
HOH
1278
7
HOH
HOH
1278
A
HOH
1279
7
HOH
HOH
1279
A
HOH
1280
7
HOH
HOH
1280
A
HOH
1281
7
HOH
HOH
1281
A
HOH
1282
7
HOH
HOH
1282
A
HOH
1283
7
HOH
HOH
1283
A
HOH
1284
7
HOH
HOH
1284
A
HOH
1285
7
HOH
HOH
1285
A
HOH
1286
7
HOH
HOH
1286
A
HOH
1287
7
HOH
HOH
1287
A
HOH
1288
7
HOH
HOH
1288
A
HOH
1289
7
HOH
HOH
1289
A
HOH
1290
7
HOH
HOH
1290
A
HOH
1291
7
HOH
HOH
1291
A
HOH
1292
7
HOH
HOH
1292
A
HOH
1293
7
HOH
HOH
1293
A
HOH
1294
7
HOH
HOH
1294
A
HOH
1295
7
HOH
HOH
1295
A
HOH
1296
7
HOH
HOH
1296
A
HOH
1297
7
HOH
HOH
1297
A
HOH
1298
7
HOH
HOH
1298
A
HOH
1299
7
HOH
HOH
1299
A
HOH
1300
7
HOH
HOH
1300
A
HOH
1301
7
HOH
HOH
1301
A
HOH
1302
7
HOH
HOH
1302
A
HOH
1303
7
HOH
HOH
1303
A
HOH
1304
7
HOH
HOH
1304
A
HOH
1305
7
HOH
HOH
1305
A
HOH
1306
7
HOH
HOH
1306
A
HOH
1307
7
HOH
HOH
1307
A
HOH
1308
7
HOH
HOH
1308
A
HOH
1309
7
HOH
HOH
1309
A
HOH
1310
7
HOH
HOH
1310
A
HOH
1311
7
HOH
HOH
1311
A
HOH
1312
7
HOH
HOH
1312
A
HOH
1313
7
HOH
HOH
1313
A
HOH
1314
7
HOH
HOH
1314
A
HOH
1315
7
HOH
HOH
1315
A
HOH
1316
7
HOH
HOH
1316
A
HOH
1317
7
HOH
HOH
1317
A
HOH
1318
7
HOH
HOH
1318
A
HOH
1319
7
HOH
HOH
1319
A
HOH
1320
7
HOH
HOH
1320
A
HOH
1321
7
HOH
HOH
1321
A
HOH
1322
7
HOH
HOH
1322
A
HOH
1323
7
HOH
HOH
1323
A
HOH
1324
7
HOH
HOH
1324
A
HOH
1325
7
HOH
HOH
1325
A
HOH
1326
7
HOH
HOH
1326
A
HOH
1327
7
HOH
HOH
1327
A
HOH
1328
7
HOH
HOH
1328
A
HOH
1329
7
HOH
HOH
1329
A
HOH
1330
7
HOH
HOH
1330
A
HOH
1331
7
HOH
HOH
1331
A
HOH
1332
7
HOH
HOH
1332
A
HOH
1333
7
HOH
HOH
1333
A
HOH
1334
7
HOH
HOH
1334
A
HOH
1335
7
HOH
HOH
1335
A
HOH
1336
7
HOH
HOH
1336
A
HOH
1337
7
HOH
HOH
1337
A
HOH
1338
7
HOH
HOH
1338
A
HOH
1339
7
HOH
HOH
1339
A
HOH
1340
7
HOH
HOH
1340
A
HOH
1341
7
HOH
HOH
1341
A
HOH
1342
7
HOH
HOH
1342
A
HOH
1343
7
HOH
HOH
1343
A
HOH
1344
7
HOH
HOH
1344
A
HOH
1345
7
HOH
HOH
1345
A
HOH
1346
7
HOH
HOH
1346
A
HOH
1347
7
HOH
HOH
1347
A
HOH
1348
7
HOH
HOH
1348
A
HOH
1349
7
HOH
HOH
1349
A
HOH
1350
7
HOH
HOH
1350
A
HOH
1351
7
HOH
HOH
1351
A
HOH
1352
7
HOH
HOH
1352
A
HOH
1353
7
HOH
HOH
1353
A
HOH
1354
7
HOH
HOH
1354
A
HOH
1355
7
HOH
HOH
1355
A
HOH
1356
7
HOH
HOH
1356
A
HOH
1357
7
HOH
HOH
1357
A
HOH
1358
7
HOH
HOH
1358
A
HOH
1359
7
HOH
HOH
1359
A
HOH
1360
7
HOH
HOH
1360
A
HOH
1361
7
HOH
HOH
1361
A
HOH
1362
7
HOH
HOH
1362
A
HOH
1363
7
HOH
HOH
1363
A
ILE
16
n
1
ILE
16
A
VAL
17
n
2
VAL
17
A
GLY
18
n
3
GLY
18
A
GLY
19
n
4
GLY
19
A
TYR
20
n
5
TYR
20
A
THR
21
n
6
THR
21
A
CYS
22
n
7
CYS
22
A
GLY
23
n
8
GLY
23
A
ALA
24
n
9
ALA
24
A
ASN
25
n
10
ASN
25
A
THR
26
n
11
THR
26
A
VAL
27
n
12
VAL
27
A
PRO
28
n
13
PRO
28
A
TYR
29
n
14
TYR
29
A
GLN
30
n
15
GLN
30
A
VAL
31
n
16
VAL
31
A
SER
32
n
17
SER
32
A
LEU
33
n
18
LEU
33
A
ASN
34
n
19
ASN
34
A
SER
37
n
20
SER
37
A
GLY
38
n
21
GLY
38
A
TYR
39
n
22
TYR
39
A
HIS
40
n
23
HIS
40
A
PHE
41
n
24
PHE
41
A
CYS
42
n
25
CYS
42
A
GLY
43
n
26
GLY
43
A
GLY
44
n
27
GLY
44
A
SER
45
n
28
SER
45
A
LEU
46
n
29
LEU
46
A
ILE
47
n
30
ILE
47
A
ASN
48
n
31
ASN
48
A
SER
49
n
32
SER
49
A
GLN
50
n
33
GLN
50
A
TRP
51
n
34
TRP
51
A
VAL
52
n
35
VAL
52
A
VAL
53
n
36
VAL
53
A
SER
54
n
37
SER
54
A
ALA
55
n
38
ALA
55
A
ALA
56
n
39
ALA
56
A
HIS
57
n
40
HIS
57
A
CYS
58
n
41
CYS
58
A
TYR
59
n
42
TYR
59
A
LYS
60
n
43
LYS
60
A
SER
61
n
44
SER
61
A
GLY
62
n
45
GLY
62
A
ILE
63
n
46
ILE
63
A
GLN
64
n
47
GLN
64
A
VAL
65
n
48
VAL
65
A
ARG
66
n
49
ARG
66
A
LEU
67
n
50
LEU
67
A
GLY
69
n
51
GLY
69
A
GLU
70
n
52
GLU
70
A
ASP
71
n
53
ASP
71
A
ASN
72
n
54
ASN
72
A
ILE
73
n
55
ILE
73
A
ASN
74
n
56
ASN
74
A
VAL
75
n
57
VAL
75
A
VAL
76
n
58
VAL
76
A
GLU
77
n
59
GLU
77
A
GLY
78
n
60
GLY
78
A
ASN
79
n
61
ASN
79
A
GLU
80
n
62
GLU
80
A
GLN
81
n
63
GLN
81
A
PHE
82
n
64
PHE
82
A
ILE
83
n
65
ILE
83
A
SER
84
n
66
SER
84
A
ALA
85
n
67
ALA
85
A
SER
86
n
68
SER
86
A
LYS
87
n
69
LYS
87
A
SER
88
n
70
SER
88
A
ILE
89
n
71
ILE
89
A
VAL
90
n
72
VAL
90
A
HIS
91
n
73
HIS
91
A
PRO
92
n
74
PRO
92
A
SER
93
n
75
SER
93
A
TYR
94
n
76
TYR
94
A
ASN
95
n
77
ASN
95
A
SER
96
n
78
SER
96
A
GLU
97
n
79
GLU
97
A
THR
98
n
80
THR
98
A
TYR
99
n
81
TYR
99
A
ASN
100
n
82
ASN
100
A
ASN
101
n
83
ASN
101
A
ASP
102
n
84
ASP
102
A
ILE
103
n
85
ILE
103
A
MET
104
n
86
MET
104
A
LEU
105
n
87
LEU
105
A
ILE
106
n
88
ILE
106
A
LYS
107
n
89
LYS
107
A
LEU
108
n
90
LEU
108
A
LYS
109
n
91
LYS
109
A
SER
110
n
92
SER
110
A
ALA
111
n
93
ALA
111
A
ALA
112
n
94
ALA
112
A
SER
113
n
95
SER
113
A
LEU
114
n
96
LEU
114
A
ASN
115
n
97
ASN
115
A
SER
116
n
98
SER
116
A
ARG
117
n
99
ARG
117
A
VAL
118
n
100
VAL
118
A
ALA
119
n
101
ALA
119
A
SER
120
n
102
SER
120
A
ILE
121
n
103
ILE
121
A
SER
122
n
104
SER
122
A
LEU
123
n
105
LEU
123
A
PRO
124
n
106
PRO
124
A
THR
125
n
107
THR
125
A
SER
127
n
108
SER
127
A
CYS
128
n
109
CYS
128
A
ALA
129
n
110
ALA
129
A
SER
130
n
111
SER
130
A
ALA
132
n
112
ALA
132
A
GLY
133
n
113
GLY
133
A
THR
134
n
114
THR
134
A
GLN
135
n
115
GLN
135
A
CYS
136
n
116
CYS
136
A
LEU
137
n
117
LEU
137
A
ILE
138
n
118
ILE
138
A
SER
139
n
119
SER
139
A
GLY
140
n
120
GLY
140
A
TRP
141
n
121
TRP
141
A
GLY
142
n
122
GLY
142
A
ASN
143
n
123
ASN
143
A
THR
144
n
124
THR
144
A
LYS
145
n
125
LYS
145
A
SER
146
n
126
SER
146
A
SER
147
n
127
SER
147
A
GLY
148
n
128
GLY
148
A
THR
149
n
129
THR
149
A
SER
150
n
130
SER
150
A
TYR
151
n
131
TYR
151
A
PRO
152
n
132
PRO
152
A
ASP
153
n
133
ASP
153
A
VAL
154
n
134
VAL
154
A
LEU
155
n
135
LEU
155
A
LYS
156
n
136
LYS
156
A
CYS
157
n
137
CYS
157
A
LEU
158
n
138
LEU
158
A
LYS
159
n
139
LYS
159
A
ALA
160
n
140
ALA
160
A
PRO
161
n
141
PRO
161
A
ILE
162
n
142
ILE
162
A
LEU
163
n
143
LEU
163
A
SER
164
n
144
SER
164
A
ASP
165
n
145
ASP
165
A
SER
166
n
146
SER
166
A
SER
167
n
147
SER
167
A
CYS
168
n
148
CYS
168
A
LYS
169
n
149
LYS
169
A
SER
170
n
150
SER
170
A
ALA
171
n
151
ALA
171
A
SER
172
n
152
SER
172
A
SER
173
n
153
SER
173
A
PHE
174
n
154
PHE
174
A
ILE
175
n
155
ILE
175
A
ILE
176
n
156
ILE
176
A
THR
177
n
157
THR
177
A
SER
178
n
158
SER
178
A
ASN
179
n
159
ASN
179
A
MET
180
n
160
MET
180
A
PHE
181
n
161
PHE
181
A
CYS
182
n
162
CYS
182
A
ALA
183
n
163
ALA
183
A
GLY
184
n
164
GLY
184
A
TYR
184
n
165
A
TYR
184
A
LEU
185
n
166
LEU
185
A
GLU
186
n
167
GLU
186
A
GLY
187
n
168
GLY
187
A
GLY
188
n
169
GLY
188
A
LYS
188
n
170
A
LYS
188
A
ASP
189
n
171
ASP
189
A
ALA
190
n
172
ALA
190
A
CYS
191
n
173
CYS
191
A
GLN
192
n
174
GLN
192
A
GLY
193
n
175
GLY
193
A
ASP
194
n
176
ASP
194
A
SER
195
n
177
SER
195
A
GLY
196
n
178
GLY
196
A
GLY
197
n
179
GLY
197
A
PRO
198
n
180
PRO
198
A
VAL
199
n
181
VAL
199
A
VAL
200
n
182
VAL
200
A
CYS
201
n
183
CYS
201
A
SER
202
n
184
SER
202
A
GLY
203
n
185
GLY
203
A
LYS
204
n
186
LYS
204
A
LEU
209
n
187
LEU
209
A
GLN
210
n
188
GLN
210
A
GLY
211
n
189
GLY
211
A
ILE
212
n
190
ILE
212
A
VAL
213
n
191
VAL
213
A
SER
214
n
192
SER
214
A
TRP
215
n
193
TRP
215
A
GLY
216
n
194
GLY
216
A
SER
217
n
195
SER
217
A
GLY
219
n
196
GLY
219
A
CYS
220
n
197
CYS
220
A
ALA
221
n
198
ALA
221
A
GLN
221
n
199
A
GLN
221
A
LYS
222
n
200
LYS
222
A
ASN
223
n
201
ASN
223
A
LYS
224
n
202
LYS
224
A
PRO
225
n
203
PRO
225
A
GLY
226
n
204
GLY
226
A
ILE
227
n
205
ILE
227
A
TYR
228
n
206
TYR
228
A
THR
229
n
207
THR
229
A
LYS
230
n
208
LYS
230
A
VAL
231
n
209
VAL
231
A
CYS
232
n
210
CYS
232
A
ASN
233
n
211
ASN
233
A
TYR
234
n
212
TYR
234
A
VAL
235
n
213
VAL
235
A
SER
236
n
214
SER
236
A
TRP
237
n
215
TRP
237
A
ILE
238
n
216
ILE
238
A
LYS
239
n
217
LYS
239
A
GLN
240
n
218
GLN
240
A
THR
241
n
219
THR
241
A
ILE
242
n
220
ILE
242
A
ALA
243
n
221
ALA
243
A
SER
244
n
222
SER
244
A
ASN
245
n
223
ASN
245
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
2890
-166
17730
A
GLU
70
A
OE1
GLU
52
1_555
A
CA
301
B
CA
CA
1_555
A
ASN
72
A
O
ASN
54
1_555
91.2
A
GLU
70
A
OE1
GLU
52
1_555
A
CA
301
B
CA
CA
1_555
A
VAL
75
A
O
VAL
57
1_555
165.1
A
ASN
72
A
O
ASN
54
1_555
A
CA
301
B
CA
CA
1_555
A
VAL
75
A
O
VAL
57
1_555
85.5
A
GLU
70
A
OE1
GLU
52
1_555
A
CA
301
B
CA
CA
1_555
A
GLU
80
A
OE2
GLU
62
1_555
102.0
A
ASN
72
A
O
ASN
54
1_555
A
CA
301
B
CA
CA
1_555
A
GLU
80
A
OE2
GLU
62
1_555
158.6
A
VAL
75
A
O
VAL
57
1_555
A
CA
301
B
CA
CA
1_555
A
GLU
80
A
OE2
GLU
62
1_555
85.8
A
GLU
70
A
OE1
GLU
52
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
1061
J
O
HOH
1_555
87.3
A
ASN
72
A
O
ASN
54
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
1061
J
O
HOH
1_555
88.4
A
VAL
75
A
O
VAL
57
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
1061
J
O
HOH
1_555
107.1
A
GLU
80
A
OE2
GLU
62
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
1061
J
O
HOH
1_555
75.6
A
GLU
70
A
OE1
GLU
52
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
1082
J
O
HOH
1_555
78.5
A
ASN
72
A
O
ASN
54
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
1082
J
O
HOH
1_555
105.0
A
VAL
75
A
O
VAL
57
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
1082
J
O
HOH
1_555
88.3
A
GLU
80
A
OE2
GLU
62
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
1082
J
O
HOH
1_555
94.2
A
HOH
1061
J
O
HOH
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
1082
J
O
HOH
1_555
160.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_555
-x,-x+y,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
37.3230000000
A
N
TYR
20
A
N
TYR
5
A
O
CYS
157
A
O
CYS
137
A
O
LEU
158
A
O
LEU
138
A
N
ILE
138
A
N
ILE
118
A
N
LEU
137
A
N
LEU
117
A
O
VAL
200
A
O
VAL
182
A
N
CYS
201
A
N
CYS
183
A
O
LYS
204
A
O
LYS
186
A
N
TRP
215
A
N
TRP
193
A
O
ILE
227
A
O
ILE
205
A
O
TYR
228
A
O
TYR
206
A
N
PHE
181
A
N
PHE
161
A
N
LEU
33
A
N
LEU
18
A
O
CYS
42
A
O
CYS
25
A
N
SER
45
A
N
SER
28
A
O
VAL
53
A
O
VAL
36
A
N
SER
54
A
N
SER
37
A
O
MET
104
A
O
MET
86
A
O
LEU
105
A
O
LEU
87
A
N
ILE
89
A
N
ILE
71
A
O
ILE
83
A
O
ILE
65
A
N
VAL
65
A
N
VAL
48
A
O
ARG
66
A
O
ARG
49
A
N
SER
32
A
N
SER
17
1
A
HOH
1196
J
HOH
1
A
HOH
1295
J
HOH
1
A
ASP
71
-117.24
-81.94
1
A
SER
214
-120.15
-68.27
21.521
-0.79
-0.40
0.00
-0.79
0.00
1.19
0.972
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23034
0.17614
0.17686
0.17686
1.45
21.80
1601
32260
32260
91.05
RANDOM
1
PROTEIN AND LIGANDS ANISOTROPIC, WATERS ISOTROPIC
THROUGHOUT
MOLECULAR REPLACEMENT
0.80
0.80
1.40
PDB ENTRY 1V2K
MAXIMUM LIKELIHOOD
MASK
1.45
21.80
364
2061
64
0
1633
0.014
0.022
1791
1.446
1.978
2449
6.611
5.000
246
40.161
25.833
60
12.605
15.000
292
16.407
15.000
2
0.103
0.200
271
0.007
0.021
1326
1.272
1.500
1134
1.992
2.000
1833
3.334
3.000
657
4.653
4.500
604
1.472
3.000
1770
0.395
0.411
1.483
25
634
634
20
24.85
1.45
25.00
3PMJ
32308
32308
0.068
1
12.9
5.9
91.0
data collection
CrystalClear
phasing
AMoRE
refinement
REFMAC
5.5.0109
data reduction
d*TREK
data scaling
SCALA
Bovine trypsin variant X(tripleIle227) in complex with small molecule inhibitor
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
7
N
N
A
ALA
55
A
ALA
38
HELX_P
A
TYR
59
A
TYR
42
5
1
5
A
SER
164
A
SER
144
HELX_P
A
SER
173
A
SER
153
1
2
10
A
TYR
234
A
TYR
212
HELX_P
A
ASN
245
A
ASN
223
1
3
12
disulf
2.054
A
CYS
22
A
SG
CYS
7
1_555
A
CYS
157
A
SG
CYS
137
1_555
disulf
2.047
A
CYS
42
A
SG
CYS
25
1_555
A
CYS
58
A
SG
CYS
41
1_555
disulf
2.020
A
CYS
128
A
SG
CYS
109
1_555
A
CYS
232
A
SG
CYS
210
1_555
disulf
2.032
A
CYS
136
A
SG
CYS
116
1_555
A
CYS
201
A
SG
CYS
183
1_555
disulf
2.011
A
CYS
168
A
SG
CYS
148
1_555
A
CYS
182
A
SG
CYS
162
1_555
disulf
2.022
A
CYS
191
A
SG
CYS
173
1_555
A
CYS
220
A
SG
CYS
197
1_555
metalc
2.264
A
GLU
70
A
OE1
GLU
52
1_555
A
CA
301
B
CA
CA
1_555
metalc
2.281
A
ASN
72
A
O
ASN
54
1_555
A
CA
301
B
CA
CA
1_555
metalc
2.292
A
VAL
75
A
O
VAL
57
1_555
A
CA
301
B
CA
CA
1_555
metalc
2.262
A
GLU
80
A
OE2
GLU
62
1_555
A
CA
301
B
CA
CA
1_555
metalc
2.419
A
CA
301
B
CA
CA
1_555
A
HOH
1061
J
O
HOH
1_555
metalc
2.446
A
CA
301
B
CA
CA
1_555
A
HOH
1082
J
O
HOH
1_555
Hydrolase/Hydrolase Inhibitor
Trypsin-like serine protease, HYDROLASE, PROTEIN BINDING, DUODENUM, Hydrolase-Hydrolase Inhibitor complex
TRY1_BOVIN
UNP
1
24
P00760
IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT
LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM
FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN
24
246
3PMJ
16
245
P00760
A
1
1
223
1
ASN
engineered mutation
GLU
97
3PMJ
A
P00760
UNP
102
79
1
LEU
engineered mutation
TYR
99
3PMJ
A
P00760
UNP
104
81
1
TYR
engineered mutation
SER
172
3PMJ
A
P00760
UNP
175
152
1
PRO
engineered mutation
SER
173
3PMJ
A
P00760
UNP
176
153
1
GLY
engineered mutation
PHE
174
3PMJ
A
P00760
UNP
177
154
1
GLN
engineered mutation
ILE
175
3PMJ
A
P00760
UNP
178
155
1
SER
engineered mutation
ALA
190
3PMJ
A
P00760
UNP
195
172
1
VAL
engineered mutation
ILE
227
3PMJ
A
P00760
UNP
228
205
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
20
A
TYR
5
A
THR
21
A
THR
6
A
LYS
156
A
LYS
136
A
PRO
161
A
PRO
141
A
GLN
135
A
GLN
115
A
GLY
140
A
GLY
120
A
PRO
198
A
PRO
180
A
CYS
201
A
CYS
183
A
LYS
204
A
LYS
186
A
TRP
215
A
TRP
193
A
GLY
226
A
GLY
204
A
LYS
230
A
LYS
208
A
MET
180
A
MET
160
A
ALA
183
A
ALA
163
A
GLN
30
A
GLN
15
A
ASN
34
A
ASN
19
A
HIS
40
A
HIS
23
A
ASN
48
A
ASN
31
A
TRP
51
A
TRP
34
A
SER
54
A
SER
37
A
MET
104
A
MET
86
A
LEU
108
A
LEU
90
A
GLN
81
A
GLN
63
A
VAL
90
A
VAL
72
A
GLN
64
A
GLN
47
A
LEU
67
A
LEU
50
A
GLN
30
A
GLN
15
A
ASN
34
A
ASN
19
BINDING SITE FOR RESIDUE CA A 480
Software
6
BINDING SITE FOR RESIDUE PMJ A 481
Software
24
BINDING SITE FOR RESIDUE GOL A 482
Software
5
BINDING SITE FOR RESIDUE SO4 A 483
Software
6
BINDING SITE FOR RESIDUE SO4 A 484
Software
10
BINDING SITE FOR RESIDUE SO4 A 485
Software
8
BINDING SITE FOR RESIDUE SO4 A 486
Software
6
BINDING SITE FOR RESIDUE CL A 487
Software
3
A
GLU
70
A
GLU
52
6
1_555
A
ASN
72
A
ASN
54
6
1_555
A
VAL
75
A
VAL
57
6
1_555
A
GLU
80
A
GLU
62
6
1_555
A
HOH
1061
J
HOH
6
1_555
A
HOH
1082
J
HOH
6
1_555
A
HIS
57
A
HIS
40
24
1_555
A
TYR
99
A
TYR
81
24
1_555
A
SER
127
A
SER
108
24
5_665
A
CYS
128
A
CYS
109
24
5_665
A
ASP
189
A
ASP
171
24
1_555
A
ALA
190
A
ALA
172
24
1_555
A
CYS
191
A
CYS
173
24
1_555
A
GLN
192
A
GLN
174
24
1_555
A
SER
195
A
SER
177
24
1_555
A
VAL
213
A
VAL
191
24
1_555
A
SER
214
A
SER
192
24
1_555
A
TRP
215
A
TRP
193
24
1_555
A
GLY
216
A
GLY
194
24
1_555
A
SER
217
A
SER
195
24
1_555
A
GLY
219
A
GLY
196
24
1_555
A
CYS
220
A
CYS
197
24
1_555
A
GLY
226
A
GLY
204
24
1_555
A
HOH
1041
J
HOH
24
1_555
A
HOH
1043
J
HOH
24
1_555
A
HOH
1127
J
HOH
24
5_665
A
HOH
1242
J
HOH
24
5_665
A
HOH
1310
J
HOH
24
1_555
A
HOH
1311
J
HOH
24
1_555
A
HOH
1321
J
HOH
24
5_665
A
GLU
80
A
GLU
62
5
1_555
A
GLN
81
A
GLN
63
5
1_555
A
PHE
82
A
PHE
64
5
1_555
A
HOH
1290
J
HOH
5
1_555
A
HOH
1300
J
HOH
5
1_555
A
THR
177
A
THR
157
6
1_555
A
SER
178
A
SER
158
6
1_555
A
HOH
1037
J
HOH
6
2_665
A
HOH
1200
J
HOH
6
2_665
A
HOH
1211
J
HOH
6
1_555
A
HOH
1363
J
HOH
6
2_665
A
ASN
48
A
ASN
31
10
1_555
A
SER
49
A
SER
32
10
1_555
A
LEU
114
A
LEU
96
10
1_555
A
ILE
175
A
ILE
155
10
3_564
A
LYS
204
A
LYS
186
10
6_555
A
HOH
1002
J
HOH
10
1_555
A
HOH
1007
J
HOH
10
1_555
A
HOH
1122
J
HOH
10
6_555
A
HOH
1157
J
HOH
10
1_555
A
HOH
1319
J
HOH
10
6_555
A
ASN
115
A
ASN
97
8
6_555
A
SER
116
A
SER
98
8
6_555
A
LYS
159
A
LYS
139
8
1_555
A
HOH
1021
J
HOH
8
1_555
A
HOH
1079
J
HOH
8
1_555
A
HOH
1092
J
HOH
8
6_555
A
HOH
1130
J
HOH
8
1_555
A
HOH
1284
J
HOH
8
1_555
A
HIS
57
A
HIS
40
6
1_555
A
GLN
192
A
GLN
174
6
1_555
A
GLY
193
A
GLY
175
6
1_555
A
SER
195
A
SER
177
6
1_555
A
HOH
1282
J
HOH
6
1_555
A
HOH
1313
J
HOH
6
1_555
A
ASP
165
A
ASP
145
3
1_555
A
SER
166
A
SER
146
3
1_555
A
HOH
1206
J
HOH
3
2_665
152
P 31 2 1