0.017734 0.000000 0.000000 0.000000 0.016021 0.000000 0.000000 0.000000 0.007149 0.00000 0.00000 0.00000 Bebenek, K. Pedersen, L.C. Kunkel, T.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 56.390 62.417 139.881 C11 H18 N5 O12 P3 505.208 2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer Mn 2 54.938 MANGANESE (II) ION non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N N N 4 N N Y 5 N C Y 6 N C N 7 N C N 8 N O Y 9 N N Y 10 N C Y 11 N N N 12 N P N 13 N P N 14 N P N 15 R C N 16 N O N 17 N O N 18 N O N 19 N C N 20 N O N 21 N O N 22 N O N 23 S C N 24 N O N 25 N C N 26 N O N 27 N O N 28 R C N 29 N O N 30 N C N 31 N O N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N N N 51 S C N 52 N C N 53 N O N 54 N C N 55 N O N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N N N 64 S C N 65 N C N 66 N O N 67 N C N 68 N C N 69 N C N 70 N N N 71 N C N 72 N N N 73 N N N 74 N O N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N N N 91 S C N 92 N C N 93 N O N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 S C N 109 N C N 110 N O N 111 N C N 112 N C N 113 N O N 114 N O N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N CL N 124 N N N 125 R C N 126 N C N 127 N O N 128 N C N 129 N S N 130 N O N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N O N 139 N P N 140 N O N 141 N O N 142 N O N 143 N C N 144 R C N 145 N O N 146 S C N 147 N O N 148 N C N 149 R C Y 150 N N Y 151 N C Y 152 N N Y 153 N C Y 154 N C N 155 N N Y 156 N N Y 157 N C Y 158 N N Y 159 N C N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N O N 175 N P N 176 N O N 177 N O N 178 N O N 179 N C N 180 R C N 181 N O N 182 S C N 183 N O N 184 N C N 185 R C N 186 N N N 187 N C N 188 N O N 189 N N N 190 N C N 191 N N N 192 N C N 193 N C N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N O N 209 N P N 210 N O N 211 N O N 212 N O N 213 N C N 214 R C N 215 N O N 216 S C N 217 N O N 218 N C N 219 R C Y 220 N N Y 221 N C Y 222 N N Y 223 N C N 224 N C N 225 N O N 226 N N N 227 N C N 228 N N N 229 N N Y 230 N C N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N O N 246 N P N 247 N O N 248 N O N 249 N O N 250 N C N 251 R C N 252 N O N 253 S C N 254 N O N 255 N C N 256 R C N 257 N N N 258 N C N 259 N O N 260 N N N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C N 286 N C N 287 N C N 288 N O N 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C N 306 N C N 307 N C N 308 N O N 309 N O N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 N C N 322 N C N 323 N O N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N N N 331 S C N 332 N C N 333 N O N 334 N C Y 335 N C Y 336 N N Y 337 N C Y 338 N C Y 339 N N N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N O N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 S C N 359 N C N 360 N C N 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C N 403 N C N 404 N C N 405 N C N 406 N N N 407 N O N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N N N 424 S C N 425 N C N 426 N O N 427 N C N 428 N C N 429 N S N 430 N C N 431 N O N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N MG N 444 N MN N 445 N NA N 446 N N N 447 S C N 448 N C N 449 N O N 450 N C Y 451 N C Y 452 N C Y 453 N C Y 454 N C Y 455 N C Y 456 N C N 457 N O N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N N N 470 S C N 471 N C N 472 N O N 473 N C N 474 N C N 475 N C N 476 N O N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N N N 487 S C N 488 N C N 489 N O N 490 N C N 491 N O N 492 N O N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N N N 501 S C N 502 N C N 503 N O N 504 R C N 505 N O N 506 N C N 507 N O N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N N N 518 S C N 519 N C N 520 N O N 521 N C Y 522 N C Y 523 N C Y 524 N C Y 525 N N Y 526 N C Y 527 N C Y 528 N C Y 529 N C Y 530 N C N 531 N O N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 544 N N N 545 S C N 546 N C N 547 N O N 548 N C Y 549 N C Y 550 N C Y 551 N C Y 552 N C Y 553 N C Y 554 N C N 555 N O N 556 N O N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N N N 569 S C N 570 N C N 571 N O N 572 N C N 573 N C N 574 N C N 575 N O N 576 N H N 577 N H N 578 N H N 579 N H N 580 N H N 581 N H N 582 N H N 583 N H N 584 N H N 585 N H N 586 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing Y 9 N sing Y 10 N doub N 11 N sing Y 12 N sing N 13 N doub Y 14 N doub Y 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N doub N 21 N sing N 22 N doub N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing Y 157 N sing Y 158 N sing Y 159 N doub N 160 N sing Y 161 N sing Y 162 N sing Y 163 N doub N 164 N sing Y 165 N doub N 166 N sing N 167 N sing Y 168 N sing Y 169 N doub N 170 N sing Y 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing Y 230 N sing Y 231 N sing Y 232 N doub N 233 N sing Y 234 N sing N 235 N sing Y 236 N doub N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N doub N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing Y 340 N sing Y 341 N doub Y 342 N doub N 343 N sing Y 344 N sing N 345 N sing Y 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N doub N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N doub N 444 N sing N 445 N sing N 446 N sing N 447 N sing Y 448 N doub Y 449 N sing Y 450 N sing N 451 N sing Y 452 N doub N 453 N sing Y 454 N doub N 455 N sing Y 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N doub N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N doub N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N doub N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N doub N 513 N sing N 514 N sing N 515 N sing N 516 N sing Y 517 N doub Y 518 N sing Y 519 N sing N 520 N sing Y 521 N doub Y 522 N sing Y 523 N sing N 524 N sing Y 525 N sing Y 526 N doub N 527 N sing Y 528 N doub N 529 N sing Y 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N doub N 541 N sing N 542 N sing N 543 N sing N 544 N sing Y 545 N doub Y 546 N sing Y 547 N sing N 548 N sing Y 549 N doub N 550 N sing Y 551 N doub N 552 N sing Y 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N doub N 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N sing N 571 N sing N 572 N sing N 573 N sing N 574 N sing N 575 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 108 1862 1867 10.1073/pnas.1012825108 21233421 Replication infidelity via a mismatch with Watson-Crick geometry. 2011 10.2210/pdb3pmn/pdb pdb_00003pmn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Varimax-HF CCD 2008-11-20 RIGAKU SATURN 92 NA SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU MICROMAX-007 HF 36736.039 DNA polymerase lambda 2.7.7.7, 4.2.99.- UNP residues 242-575 1 man polymer template DNA 3325.172 5'-D(*CP*GP*GP*CP*CP*TP*TP*AP*CP*TP*G)-3' 1 syn polymer primer DNA 1833.242 5'-D(*CP*AP*GP*TP*AP*G)-3' 1 syn polymer downstream DNA 1191.818 5'-D(*GP*CP*CP*G)-3' 1 syn polymer 505.208 2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 54.938 MANGANESE (II) ION 3 syn non-polymer 22.990 SODIUM ION 2 syn non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 18.015 water 202 nat water Pol Lambda, DNA polymerase beta-2, Pol beta2, DNA polymerase kappa no no AQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGH LRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQK AAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVKGETKYLGVCRLPGPGRRH RRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLP YREPAERDW AQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGH LRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQK AAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVKGETKYLGVCRLPGPGRRH RRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLP YREPAERDW A polypeptide(L) no no (DC)(DG)(DG)(DC)(DC)(DT)(DT)(DA)(DC)(DT)(DG) CGGCCTTACTG B polydeoxyribonucleotide no no (DC)(DA)(DG)(DT)(DA)(DG) CAGTAG C polydeoxyribonucleotide no no (DG)(DC)(DC)(DG) GCCG D polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample POLL 9606 Homo sapiens 469008 Escherichia coli BL21(DE3)RIL Plasmid PET22 1 2.86 56.94 VAPOR DIFFUSION, SITTING DROP 7.5 2M formate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 -11.401 1 19 B 1 D 4 -4.027 B_DC1:DG4_D 1 -1.589 -0.402 0.127 -0.179 7.696 1 19 B 2 D 3 -0.875 B_DG2:DC3_D 2 1.203 0.085 -0.086 -0.328 9.141 1 19 B 3 D 2 -0.802 B_DG3:DC2_D 3 0.098 -0.320 0.007 -0.042 15.607 1 19 B 4 D 1 1.116 B_DC4:DG1_D 4 -11.802 0.363 -0.134 -0.108 -4.211 1 28 B 6 C 6 -0.132 B_DT6:DG6_C 5 -8.628 2.148 0.422 -0.488 5.087 1 20 B 7 C 5 1.232 B_DT7:DA5_C 6 -10.273 -0.257 -0.020 -0.123 3.256 1 20 B 8 C 4 -0.299 B_DA8:DT4_C 7 -1.471 0.100 0.124 -0.152 1.327 1 19 B 9 C 3 -2.597 B_DC9:DG3_C 8 -11.541 0.015 0.470 -0.054 5.223 1 20 B 10 C 2 2.037 B_DT10:DA2_C 9 -10.806 0.008 0.071 -0.065 20.752 1 19 B 11 C 1 -1.295 B_DG11:DC1_C 10 -16.478 -0.044 0.529 -0.254 3.015 33.740 B B 1 2 5.350 D D 4 3 2.920 3.097 1.042 0.299 BB_DC1DG2:DC3DG4_DD 1 3.058 -5.282 33.466 0.058 -1.344 3.388 34.660 B B 2 3 2.049 D D 3 2 3.355 1.219 -0.646 -0.096 BB_DG2DG3:DC2DC3_DD 2 -2.598 4.365 34.545 -0.355 0.673 2.988 36.028 B B 3 4 9.352 D D 2 1 3.201 5.760 0.511 -1.014 BB_DG3DC4:DG1DC2_DD 3 -1.163 1.888 35.561 -2.418 -0.984 2.888 24.680 B B 6 7 11.479 C C 6 5 3.063 4.862 0.366 -0.708 BB_DT6DT7:DA5DG6_CC 4 3.106 -7.333 24.006 -3.026 0.019 3.017 31.576 B B 7 8 13.056 C C 5 4 3.243 7.038 -0.440 -0.801 BB_DT7DA8:DT4DA5_CC 5 -2.779 5.155 30.678 -2.740 0.307 3.392 32.864 B B 8 9 3.503 C C 4 3 3.350 1.976 -0.864 -0.553 BB_DA8DC9:DG3DT4_CC 6 -4.053 7.186 32.561 -1.328 0.810 3.120 33.495 B B 9 10 3.843 C C 3 2 3.186 2.210 -0.187 -0.398 BB_DC9DT10:DA2DG3_CC 7 3.395 -5.904 33.257 -1.043 0.866 2.919 35.023 B B 10 11 22.262 C C 2 1 2.994 13.073 0.380 0.482 BB_DT10DG11:DC1DA2_CC 8 -3.161 5.383 32.413 -1.051 -1.079 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2011-02-02 1 1 2011-07-13 1 2 2024-02-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Author states that polymerase lambda loop residues from 463 to 471 (SQEENGQQQ) are replaced by residues "KGET" RCSB Y RCSB 2010-11-17 REL REL 1GC 2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine MG MAGNESIUM ION MN MANGANESE (II) ION NA SODIUM ION CL CHLORIDE ION HOH water 1GC 1 5 1GC 1GC 1 A MG 1 6 MG MG 576 A MN 2 7 MN MN 2 A NA 5 8 NA NA 5 A MN 6 7 MN MN 6 A MN 7 7 MN MN 7 A CL 8 9 CL CL 8 A CL 9 9 CL CL 9 A NA 10 8 NA NA 10 A TIP 3 10 HOH HOH 3 A TIP 4 10 HOH HOH 4 A TIP 12 10 HOH HOH 12 A TIP 13 10 HOH HOH 13 A TIP 14 10 HOH HOH 14 A TIP 16 10 HOH HOH 16 A TIP 17 10 HOH HOH 17 A TIP 19 10 HOH HOH 19 A TIP 21 10 HOH HOH 21 A TIP 22 10 HOH HOH 22 A TIP 24 10 HOH HOH 24 A TIP 25 10 HOH HOH 25 A TIP 26 10 HOH HOH 26 A TIP 27 10 HOH HOH 27 A TIP 29 10 HOH HOH 29 A TIP 30 10 HOH HOH 30 A TIP 31 10 HOH HOH 31 A TIP 33 10 HOH HOH 33 A TIP 34 10 HOH HOH 34 A TIP 35 10 HOH HOH 35 A TIP 37 10 HOH HOH 37 A TIP 38 10 HOH HOH 38 A TIP 39 10 HOH HOH 39 A TIP 40 10 HOH HOH 40 A TIP 41 10 HOH HOH 41 A TIP 42 10 HOH HOH 42 A TIP 43 10 HOH HOH 43 A TIP 44 10 HOH HOH 44 A TIP 45 10 HOH HOH 45 A TIP 47 10 HOH HOH 47 A TIP 49 10 HOH HOH 49 A TIP 53 10 HOH HOH 53 A TIP 55 10 HOH HOH 55 A TIP 56 10 HOH HOH 56 A TIP 58 10 HOH HOH 58 A TIP 59 10 HOH HOH 59 A TIP 60 10 HOH HOH 60 A TIP 61 10 HOH HOH 61 A TIP 62 10 HOH HOH 62 A TIP 63 10 HOH HOH 63 A TIP 64 10 HOH HOH 64 A TIP 67 10 HOH HOH 67 A TIP 68 10 HOH HOH 68 A TIP 69 10 HOH HOH 69 A TIP 70 10 HOH HOH 70 A TIP 71 10 HOH HOH 71 A TIP 73 10 HOH HOH 73 A TIP 74 10 HOH HOH 74 A TIP 76 10 HOH HOH 76 A TIP 77 10 HOH HOH 77 A TIP 78 10 HOH HOH 78 A TIP 79 10 HOH HOH 79 A TIP 81 10 HOH HOH 81 A TIP 82 10 HOH HOH 82 A TIP 83 10 HOH HOH 83 A TIP 84 10 HOH HOH 84 A TIP 85 10 HOH HOH 85 A TIP 86 10 HOH HOH 86 A TIP 87 10 HOH HOH 87 A TIP 89 10 HOH HOH 89 A TIP 91 10 HOH HOH 91 A TIP 92 10 HOH HOH 92 A TIP 93 10 HOH HOH 93 A TIP 94 10 HOH HOH 94 A TIP 97 10 HOH HOH 97 A TIP 98 10 HOH HOH 98 A TIP 100 10 HOH HOH 100 A TIP 103 10 HOH HOH 103 A TIP 107 10 HOH HOH 107 A TIP 109 10 HOH HOH 109 A TIP 110 10 HOH HOH 110 A TIP 112 10 HOH HOH 112 A TIP 113 10 HOH HOH 113 A TIP 114 10 HOH HOH 114 A TIP 115 10 HOH HOH 115 A TIP 116 10 HOH HOH 116 A TIP 117 10 HOH HOH 117 A TIP 120 10 HOH HOH 120 A TIP 121 10 HOH HOH 121 A TIP 122 10 HOH HOH 122 A TIP 123 10 HOH HOH 123 A TIP 124 10 HOH HOH 124 A TIP 127 10 HOH HOH 127 A TIP 1 10 HOH HOH 577 A TIP 2 10 HOH HOH 578 A TIP 7 10 HOH HOH 579 A TIP 8 10 HOH HOH 580 A TIP 300 10 HOH HOH 581 A TIP 302 10 HOH HOH 582 A TIP 304 10 HOH HOH 583 A TIP 305 10 HOH HOH 584 A TIP 306 10 HOH HOH 585 A TIP 307 10 HOH HOH 586 A TIP 308 10 HOH HOH 587 A TIP 310 10 HOH HOH 588 A TIP 312 10 HOH HOH 589 A TIP 313 10 HOH HOH 590 A TIP 314 10 HOH HOH 591 A TIP 315 10 HOH HOH 592 A TIP 316 10 HOH HOH 593 A TIP 317 10 HOH HOH 594 A TIP 318 10 HOH HOH 595 A TIP 319 10 HOH HOH 596 A TIP 320 10 HOH HOH 597 A TIP 321 10 HOH HOH 598 A TIP 322 10 HOH HOH 599 A TIP 323 10 HOH HOH 600 A TIP 324 10 HOH HOH 601 A TIP 326 10 HOH HOH 602 A TIP 328 10 HOH HOH 603 A TIP 329 10 HOH HOH 604 A TIP 330 10 HOH HOH 605 A TIP 331 10 HOH HOH 606 A TIP 332 10 HOH HOH 607 A TIP 350 10 HOH HOH 608 A TIP 351 10 HOH HOH 609 A TIP 352 10 HOH HOH 610 A TIP 353 10 HOH HOH 611 A TIP 354 10 HOH HOH 612 A TIP 400 10 HOH HOH 613 A TIP 401 10 HOH HOH 614 A TIP 402 10 HOH HOH 615 A TIP 403 10 HOH HOH 616 A TIP 404 10 HOH HOH 617 A TIP 406 10 HOH HOH 618 A TIP 407 10 HOH HOH 619 A TIP 408 10 HOH HOH 620 A TIP 409 10 HOH HOH 621 A TIP 410 10 HOH HOH 622 A TIP 411 10 HOH HOH 623 A TIP 412 10 HOH HOH 624 A TIP 413 10 HOH HOH 625 A TIP 414 10 HOH HOH 626 A TIP 415 10 HOH HOH 627 A TIP 416 10 HOH HOH 628 A TIP 419 10 HOH HOH 629 A TIP 420 10 HOH HOH 630 A TIP 421 10 HOH HOH 631 A TIP 426 10 HOH HOH 632 A TIP 427 10 HOH HOH 633 A TIP 428 10 HOH HOH 634 A TIP 429 10 HOH HOH 635 A TIP 430 10 HOH HOH 636 A TIP 431 10 HOH HOH 637 A TIP 432 10 HOH HOH 638 A TIP 433 10 HOH HOH 639 A TIP 6 10 HOH HOH 12 B TIP 18 10 HOH HOH 18 B TIP 23 10 HOH HOH 23 B TIP 28 10 HOH HOH 28 B TIP 32 10 HOH HOH 32 B TIP 46 10 HOH HOH 46 B TIP 48 10 HOH HOH 48 B TIP 52 10 HOH HOH 52 B TIP 54 10 HOH HOH 54 B TIP 65 10 HOH HOH 65 B TIP 75 10 HOH HOH 75 B TIP 101 10 HOH HOH 101 B TIP 104 10 HOH HOH 104 B TIP 105 10 HOH HOH 105 B TIP 111 10 HOH HOH 111 B TIP 118 10 HOH HOH 118 B TIP 125 10 HOH HOH 125 B TIP 128 10 HOH HOH 128 B TIP 129 10 HOH HOH 129 B TIP 327 10 HOH HOH 327 B TIP 362 10 HOH HOH 362 B TIP 363 10 HOH HOH 363 B TIP 364 10 HOH HOH 364 B TIP 405 10 HOH HOH 405 B TIP 418 10 HOH HOH 418 B TIP 424 10 HOH HOH 424 B TIP 425 10 HOH HOH 425 B TIP 5 10 HOH HOH 7 C TIP 9 10 HOH HOH 9 C TIP 10 10 HOH HOH 10 C TIP 15 10 HOH HOH 15 C TIP 20 10 HOH HOH 20 C TIP 36 10 HOH HOH 36 C TIP 50 10 HOH HOH 50 C TIP 51 10 HOH HOH 51 C TIP 57 10 HOH HOH 57 C TIP 66 10 HOH HOH 66 C TIP 72 10 HOH HOH 72 C TIP 88 10 HOH HOH 88 C TIP 90 10 HOH HOH 90 C TIP 95 10 HOH HOH 95 C TIP 96 10 HOH HOH 96 C TIP 99 10 HOH HOH 99 C TIP 303 10 HOH HOH 303 C TIP 360 10 HOH HOH 360 C TIP 361 10 HOH HOH 361 C TIP 422 10 HOH HOH 422 C TIP 423 10 HOH HOH 423 C TIP 80 10 HOH HOH 80 D TIP 102 10 HOH HOH 102 D TIP 106 10 HOH HOH 106 D TIP 108 10 HOH HOH 108 D TIP 365 10 HOH HOH 365 D TIP 366 10 HOH HOH 366 D TIP 367 10 HOH HOH 367 D TIP 368 10 HOH HOH 368 D n 1 242 A n 2 243 A n 3 244 A n 4 245 A n 5 246 A n 6 247 A n 7 248 A ALA 249 n 8 ALA 249 A THR 250 n 9 THR 250 A ASN 251 n 10 ASN 251 A HIS 252 n 11 HIS 252 A ASN 253 n 12 ASN 253 A LEU 254 n 13 LEU 254 A HIS 255 n 14 HIS 255 A ILE 256 n 15 ILE 256 A THR 257 n 16 THR 257 A GLU 258 n 17 GLU 258 A LYS 259 n 18 LYS 259 A LEU 260 n 19 LEU 260 A GLU 261 n 20 GLU 261 A VAL 262 n 21 VAL 262 A LEU 263 n 22 LEU 263 A ALA 264 n 23 ALA 264 A LYS 265 n 24 LYS 265 A ALA 266 n 25 ALA 266 A TYR 267 n 26 TYR 267 A SER 268 n 27 SER 268 A VAL 269 n 28 VAL 269 A GLN 270 n 29 GLN 270 A GLY 271 n 30 GLY 271 A ASP 272 n 31 ASP 272 A LYS 273 n 32 LYS 273 A TRP 274 n 33 TRP 274 A ARG 275 n 34 ARG 275 A ALA 276 n 35 ALA 276 A LEU 277 n 36 LEU 277 A GLY 278 n 37 GLY 278 A TYR 279 n 38 TYR 279 A ALA 280 n 39 ALA 280 A LYS 281 n 40 LYS 281 A ALA 282 n 41 ALA 282 A ILE 283 n 42 ILE 283 A ASN 284 n 43 ASN 284 A ALA 285 n 44 ALA 285 A LEU 286 n 45 LEU 286 A LYS 287 n 46 LYS 287 A SER 288 n 47 SER 288 A PHE 289 n 48 PHE 289 A HIS 290 n 49 HIS 290 A LYS 291 n 50 LYS 291 A PRO 292 n 51 PRO 292 A VAL 293 n 52 VAL 293 A THR 294 n 53 THR 294 A SER 295 n 54 SER 295 A TYR 296 n 55 TYR 296 A GLN 297 n 56 GLN 297 A GLU 298 n 57 GLU 298 A ALA 299 n 58 ALA 299 A CYS 300 n 59 CYS 300 A SER 301 n 60 SER 301 A ILE 302 n 61 ILE 302 A PRO 303 n 62 PRO 303 A GLY 304 n 63 GLY 304 A ILE 305 n 64 ILE 305 A GLY 306 n 65 GLY 306 A LYS 307 n 66 LYS 307 A ARG 308 n 67 ARG 308 A MET 309 n 68 MET 309 A ALA 310 n 69 ALA 310 A GLU 311 n 70 GLU 311 A LYS 312 n 71 LYS 312 A ILE 313 n 72 ILE 313 A ILE 314 n 73 ILE 314 A GLU 315 n 74 GLU 315 A ILE 316 n 75 ILE 316 A LEU 317 n 76 LEU 317 A GLU 318 n 77 GLU 318 A SER 319 n 78 SER 319 A GLY 320 n 79 GLY 320 A HIS 321 n 80 HIS 321 A LEU 322 n 81 LEU 322 A ARG 323 n 82 ARG 323 A LYS 324 n 83 LYS 324 A LEU 325 n 84 LEU 325 A ASP 326 n 85 ASP 326 A HIS 327 n 86 HIS 327 A ILE 328 n 87 ILE 328 A SER 329 n 88 SER 329 A GLU 330 n 89 GLU 330 A SER 331 n 90 SER 331 A VAL 332 n 91 VAL 332 A PRO 333 n 92 PRO 333 A VAL 334 n 93 VAL 334 A LEU 335 n 94 LEU 335 A GLU 336 n 95 GLU 336 A LEU 337 n 96 LEU 337 A PHE 338 n 97 PHE 338 A SER 339 n 98 SER 339 A ASN 340 n 99 ASN 340 A ILE 341 n 100 ILE 341 A TRP 342 n 101 TRP 342 A GLY 343 n 102 GLY 343 A ALA 344 n 103 ALA 344 A GLY 345 n 104 GLY 345 A THR 346 n 105 THR 346 A LYS 347 n 106 LYS 347 A THR 348 n 107 THR 348 A ALA 349 n 108 ALA 349 A GLN 350 n 109 GLN 350 A MET 351 n 110 MET 351 A TRP 352 n 111 TRP 352 A TYR 353 n 112 TYR 353 A GLN 354 n 113 GLN 354 A GLN 355 n 114 GLN 355 A GLY 356 n 115 GLY 356 A PHE 357 n 116 PHE 357 A ARG 358 n 117 ARG 358 A SER 359 n 118 SER 359 A LEU 360 n 119 LEU 360 A GLU 361 n 120 GLU 361 A ASP 362 n 121 ASP 362 A ILE 363 n 122 ILE 363 A ARG 364 n 123 ARG 364 A SER 365 n 124 SER 365 A GLN 366 n 125 GLN 366 A ALA 367 n 126 ALA 367 A SER 368 n 127 SER 368 A LEU 369 n 128 LEU 369 A THR 370 n 129 THR 370 A THR 371 n 130 THR 371 A GLN 372 n 131 GLN 372 A GLN 373 n 132 GLN 373 A ALA 374 n 133 ALA 374 A ILE 375 n 134 ILE 375 A GLY 376 n 135 GLY 376 A LEU 377 n 136 LEU 377 A LYS 378 n 137 LYS 378 A HIS 379 n 138 HIS 379 A TYR 380 n 139 TYR 380 A SER 381 n 140 SER 381 A ASP 382 n 141 ASP 382 A PHE 383 n 142 PHE 383 A LEU 384 n 143 LEU 384 A GLU 385 n 144 GLU 385 A ARG 386 n 145 ARG 386 A MET 387 n 146 MET 387 A PRO 388 n 147 PRO 388 A ARG 389 n 148 ARG 389 A GLU 390 n 149 GLU 390 A GLU 391 n 150 GLU 391 A ALA 392 n 151 ALA 392 A THR 393 n 152 THR 393 A GLU 394 n 153 GLU 394 A ILE 395 n 154 ILE 395 A GLU 396 n 155 GLU 396 A GLN 397 n 156 GLN 397 A THR 398 n 157 THR 398 A VAL 399 n 158 VAL 399 A GLN 400 n 159 GLN 400 A LYS 401 n 160 LYS 401 A ALA 402 n 161 ALA 402 A ALA 403 n 162 ALA 403 A GLN 404 n 163 GLN 404 A ALA 405 n 164 ALA 405 A PHE 406 n 165 PHE 406 A ASN 407 n 166 ASN 407 A SER 408 n 167 SER 408 A GLY 409 n 168 GLY 409 A LEU 410 n 169 LEU 410 A LEU 411 n 170 LEU 411 A CYS 412 n 171 CYS 412 A VAL 413 n 172 VAL 413 A ALA 414 n 173 ALA 414 A CYS 415 n 174 CYS 415 A GLY 416 n 175 GLY 416 A SER 417 n 176 SER 417 A TYR 418 n 177 TYR 418 A ARG 419 n 178 ARG 419 A ARG 420 n 179 ARG 420 A GLY 421 n 180 GLY 421 A LYS 422 n 181 LYS 422 A ALA 423 n 182 ALA 423 A THR 424 n 183 THR 424 A CYS 425 n 184 CYS 425 A GLY 426 n 185 GLY 426 A ASP 427 n 186 ASP 427 A VAL 428 n 187 VAL 428 A ASP 429 n 188 ASP 429 A VAL 430 n 189 VAL 430 A LEU 431 n 190 LEU 431 A ILE 432 n 191 ILE 432 A THR 433 n 192 THR 433 A HIS 434 n 193 HIS 434 A PRO 435 n 194 PRO 435 A ASP 436 n 195 ASP 436 A GLY 437 n 196 GLY 437 A ARG 438 n 197 ARG 438 A SER 439 n 198 SER 439 A HIS 440 n 199 HIS 440 A ARG 441 n 200 ARG 441 A GLY 442 n 201 GLY 442 A ILE 443 n 202 ILE 443 A PHE 444 n 203 PHE 444 A SER 445 n 204 SER 445 A ARG 446 n 205 ARG 446 A LEU 447 n 206 LEU 447 A LEU 448 n 207 LEU 448 A ASP 449 n 208 ASP 449 A SER 450 n 209 SER 450 A LEU 451 n 210 LEU 451 A ARG 452 n 211 ARG 452 A GLN 453 n 212 GLN 453 A GLU 454 n 213 GLU 454 A GLY 455 n 214 GLY 455 A PHE 456 n 215 PHE 456 A LEU 457 n 216 LEU 457 A THR 458 n 217 THR 458 A ASP 459 n 218 ASP 459 A ASP 460 n 219 ASP 460 A LEU 461 n 220 LEU 461 A VAL 462 n 221 VAL 462 A LYS 463 n 222 LYS 463 A GLY 464 n 223 GLY 464 A GLU 470 n 224 GLU 470 A THR 471 n 225 THR 471 A LYS 472 n 226 LYS 472 A TYR 473 n 227 TYR 473 A LEU 474 n 228 LEU 474 A GLY 475 n 229 GLY 475 A VAL 476 n 230 VAL 476 A CYS 477 n 231 CYS 477 A ARG 478 n 232 ARG 478 A LEU 479 n 233 LEU 479 A PRO 480 n 234 PRO 480 A GLY 481 n 235 GLY 481 A PRO 482 n 236 PRO 482 A GLY 483 n 237 GLY 483 A ARG 484 n 238 ARG 484 A ARG 485 n 239 ARG 485 A HIS 486 n 240 HIS 486 A ARG 487 n 241 ARG 487 A ARG 488 n 242 ARG 488 A LEU 489 n 243 LEU 489 A ASP 490 n 244 ASP 490 A ILE 491 n 245 ILE 491 A ILE 492 n 246 ILE 492 A VAL 493 n 247 VAL 493 A VAL 494 n 248 VAL 494 A PRO 495 n 249 PRO 495 A TYR 496 n 250 TYR 496 A SER 497 n 251 SER 497 A GLU 498 n 252 GLU 498 A PHE 499 n 253 PHE 499 A ALA 500 n 254 ALA 500 A CYS 501 n 255 CYS 501 A ALA 502 n 256 ALA 502 A LEU 503 n 257 LEU 503 A LEU 504 n 258 LEU 504 A TYR 505 n 259 TYR 505 A PHE 506 n 260 PHE 506 A THR 507 n 261 THR 507 A GLY 508 n 262 GLY 508 A SER 509 n 263 SER 509 A ALA 510 n 264 ALA 510 A HIS 511 n 265 HIS 511 A PHE 512 n 266 PHE 512 A ASN 513 n 267 ASN 513 A ARG 514 n 268 ARG 514 A SER 515 n 269 SER 515 A MET 516 n 270 MET 516 A ARG 517 n 271 ARG 517 A ALA 518 n 272 ALA 518 A LEU 519 n 273 LEU 519 A ALA 520 n 274 ALA 520 A LYS 521 n 275 LYS 521 A THR 522 n 276 THR 522 A LYS 523 n 277 LYS 523 A GLY 524 n 278 GLY 524 A MET 525 n 279 MET 525 A SER 526 n 280 SER 526 A LEU 527 n 281 LEU 527 A SER 528 n 282 SER 528 A GLU 529 n 283 GLU 529 A HIS 530 n 284 HIS 530 A ALA 531 n 285 ALA 531 A LEU 532 n 286 LEU 532 A SER 533 n 287 SER 533 A THR 534 n 288 THR 534 A ALA 535 n 289 ALA 535 A VAL 536 n 290 VAL 536 A n 291 537 A n 292 538 A n 293 539 A n 294 540 A n 295 541 A n 296 542 A n 297 543 A n 298 544 A n 299 545 A n 300 546 A PRO 547 n 301 PRO 547 A GLY 548 n 302 GLY 548 A ARG 549 n 303 ARG 549 A VAL 550 n 304 VAL 550 A LEU 551 n 305 LEU 551 A PRO 552 n 306 PRO 552 A THR 553 n 307 THR 553 A PRO 554 n 308 PRO 554 A THR 555 n 309 THR 555 A GLU 556 n 310 GLU 556 A LYS 557 n 311 LYS 557 A ASP 558 n 312 ASP 558 A VAL 559 n 313 VAL 559 A PHE 560 n 314 PHE 560 A ARG 561 n 315 ARG 561 A LEU 562 n 316 LEU 562 A LEU 563 n 317 LEU 563 A GLY 564 n 318 GLY 564 A LEU 565 n 319 LEU 565 A PRO 566 n 320 PRO 566 A TYR 567 n 321 TYR 567 A ARG 568 n 322 ARG 568 A GLU 569 n 323 GLU 569 A PRO 570 n 324 PRO 570 A ALA 571 n 325 ALA 571 A GLU 572 n 326 GLU 572 A ARG 573 n 327 ARG 573 A ASP 574 n 328 ASP 574 A TRP 575 n 329 TRP 575 A DC 1 n 1 DC 1 B DG 2 n 2 DG 2 B DG 3 n 3 DG 3 B DC 4 n 4 DC 4 B DC 5 n 5 DC 5 B DT 6 n 6 DT 6 B DT 7 n 7 DT 7 B DA 8 n 8 DA 8 B DC 9 n 9 DC 9 B DT 10 n 10 DT 10 B DG 11 n 11 DG 11 B DC 1 n 1 DC 1 C DA 2 n 2 DA 2 C DG 3 n 3 DG 3 C DT 4 n 4 DT 4 C DA 5 n 5 DA 5 C DG 6 n 6 DG 6 C DG 1 n 1 DG 1 D DC 2 n 2 DC 2 D DC 3 n 3 DC 3 D DG 4 n 4 DG 4 D author_and_software_defined_assembly PISA 4 tetrameric 5230 -92 17010 A 1GC 1 E O2A 1GC 1_555 A MN 2 G MN MN 1_555 A ASP 427 A OD1 ASP 186 1_555 90.6 A 1GC 1 E O2A 1GC 1_555 A MN 2 G MN MN 1_555 A ASP 429 A OD2 ASP 188 1_555 86.1 A ASP 427 A OD1 ASP 186 1_555 A MN 2 G MN MN 1_555 A ASP 429 A OD2 ASP 188 1_555 100.4 A 1GC 1 E O2A 1GC 1_555 A MN 2 G MN MN 1_555 A ASP 490 A OD2 ASP 244 1_555 172.6 A ASP 427 A OD1 ASP 186 1_555 A MN 2 G MN MN 1_555 A ASP 490 A OD2 ASP 244 1_555 95.4 A ASP 429 A OD2 ASP 188 1_555 A MN 2 G MN MN 1_555 A ASP 490 A OD2 ASP 244 1_555 97.0 A 1GC 1 E O2A 1GC 1_555 A MN 2 G MN MN 1_555 A HOH 577 N O HOH 1_555 83.7 A ASP 427 A OD1 ASP 186 1_555 A MN 2 G MN MN 1_555 A HOH 577 N O HOH 1_555 84.3 A ASP 429 A OD2 ASP 188 1_555 A MN 2 G MN MN 1_555 A HOH 577 N O HOH 1_555 168.8 A ASP 490 A OD2 ASP 244 1_555 A MN 2 G MN MN 1_555 A HOH 577 N O HOH 1_555 92.6 A 1GC 1 E O2A 1GC 1_555 A MN 2 G MN MN 1_555 C DG 6 C O3' DG 6 1_555 95.7 A ASP 427 A OD1 ASP 186 1_555 A MN 2 G MN MN 1_555 C DG 6 C O3' DG 6 1_555 170.3 A ASP 429 A OD2 ASP 188 1_555 A MN 2 G MN MN 1_555 C DG 6 C O3' DG 6 1_555 87.4 A ASP 490 A OD2 ASP 244 1_555 A MN 2 G MN MN 1_555 C DG 6 C O3' DG 6 1_555 77.8 A HOH 577 N O HOH 1_555 A MN 2 G MN MN 1_555 C DG 6 C O3' DG 6 1_555 89.1 A 1GC 1 E O2A 1GC 1_555 A MG 576 F MG MG 1_555 A 1GC 1 E O1G 1GC 1_555 102.1 A 1GC 1 E O2A 1GC 1_555 A MG 576 F MG MG 1_555 A 1GC 1 E O2B 1GC 1_555 87.7 A 1GC 1 E O1G 1GC 1_555 A MG 576 F MG MG 1_555 A 1GC 1 E O2B 1GC 1_555 86.2 A 1GC 1 E O2A 1GC 1_555 A MG 576 F MG MG 1_555 A ASP 427 A OD2 ASP 186 1_555 107.6 A 1GC 1 E O1G 1GC 1_555 A MG 576 F MG MG 1_555 A ASP 427 A OD2 ASP 186 1_555 92.2 A 1GC 1 E O2B 1GC 1_555 A MG 576 F MG MG 1_555 A ASP 427 A OD2 ASP 186 1_555 164.6 A 1GC 1 E O2A 1GC 1_555 A MG 576 F MG MG 1_555 A ASP 429 A OD1 ASP 188 1_555 88.6 A 1GC 1 E O1G 1GC 1_555 A MG 576 F MG MG 1_555 A ASP 429 A OD1 ASP 188 1_555 166.9 A 1GC 1 E O2B 1GC 1_555 A MG 576 F MG MG 1_555 A ASP 429 A OD1 ASP 188 1_555 86.6 A ASP 427 A OD2 ASP 186 1_555 A MG 576 F MG MG 1_555 A ASP 429 A OD1 ASP 188 1_555 91.8 A 1GC 1 E O2A 1GC 1_555 A MG 576 F MG MG 1_555 A HOH 578 N O HOH 1_555 166.6 A 1GC 1 E O1G 1GC 1_555 A MG 576 F MG MG 1_555 A HOH 578 N O HOH 1_555 85.9 A 1GC 1 E O2B 1GC 1_555 A MG 576 F MG MG 1_555 A HOH 578 N O HOH 1_555 82.1 A ASP 427 A OD2 ASP 186 1_555 A MG 576 F MG MG 1_555 A HOH 578 N O HOH 1_555 82.5 A ASP 429 A OD1 ASP 188 1_555 A MG 576 F MG MG 1_555 A HOH 578 N O HOH 1_555 82.2 A SER 339 A O SER 98 1_555 A NA 5 H NA NA 1_555 A ILE 341 A O ILE 100 1_555 94.6 A SER 339 A O SER 98 1_555 A NA 5 H NA NA 1_555 A ALA 344 A O ALA 103 1_555 91.4 A ILE 341 A O ILE 100 1_555 A NA 5 H NA NA 1_555 A ALA 344 A O ALA 103 1_555 86.6 A SER 339 A O SER 98 1_555 A NA 5 H NA NA 1_555 A HOH 580 N O HOH 1_555 87.1 A ILE 341 A O ILE 100 1_555 A NA 5 H NA NA 1_555 A HOH 580 N O HOH 1_555 98.4 A ALA 344 A O ALA 103 1_555 A NA 5 H NA NA 1_555 A HOH 580 N O HOH 1_555 174.9 A SER 339 A O SER 98 1_555 A NA 5 H NA NA 1_555 C DA 5 C OP1 DA 5 1_555 166.8 A ILE 341 A O ILE 100 1_555 A NA 5 H NA NA 1_555 C DA 5 C OP1 DA 5 1_555 98.3 A ALA 344 A O ALA 103 1_555 A NA 5 H NA NA 1_555 C DA 5 C OP1 DA 5 1_555 92.1 A HOH 580 N O HOH 1_555 A NA 5 H NA NA 1_555 C DA 5 C OP1 DA 5 1_555 88.3 A SER 339 A O SER 98 1_555 A NA 5 H NA NA 1_555 C HOH 10 P O HOH 1_555 79.4 A ILE 341 A O ILE 100 1_555 A NA 5 H NA NA 1_555 C HOH 10 P O HOH 1_555 171.9 A ALA 344 A O ALA 103 1_555 A NA 5 H NA NA 1_555 C HOH 10 P O HOH 1_555 88.1 A HOH 580 N O HOH 1_555 A NA 5 H NA NA 1_555 C HOH 10 P O HOH 1_555 86.8 C DA 5 C OP1 DA 5 1_555 A NA 5 H NA NA 1_555 C HOH 10 P O HOH 1_555 88.0 A ASP 382 A OD1 ASP 141 1_555 A MN 6 I MN MN 1_555 A HIS 486 A ND1 HIS 240 1_555 96.3 A ASP 382 A OD1 ASP 141 1_555 A MN 6 I MN MN 1_555 A HOH 588 N O HOH 1_555 71.1 A HIS 486 A ND1 HIS 240 1_555 A MN 6 I MN MN 1_555 A HOH 588 N O HOH 1_555 91.2 A ASP 382 A OD1 ASP 141 1_555 A MN 6 I MN MN 1_555 A HOH 589 N O HOH 1_555 85.1 A HIS 486 A ND1 HIS 240 1_555 A MN 6 I MN MN 1_555 A HOH 589 N O HOH 1_555 175.9 A HOH 588 N O HOH 1_555 A MN 6 I MN MN 1_555 A HOH 589 N O HOH 1_555 92.9 A ASP 382 A OD1 ASP 141 1_555 A MN 6 I MN MN 1_555 A HOH 590 N O HOH 1_555 126.3 A HIS 486 A ND1 HIS 240 1_555 A MN 6 I MN MN 1_555 A HOH 590 N O HOH 1_555 88.8 A HOH 588 N O HOH 1_555 A MN 6 I MN MN 1_555 A HOH 590 N O HOH 1_555 162.5 A HOH 589 N O HOH 1_555 A MN 6 I MN MN 1_555 A HOH 590 N O HOH 1_555 87.3 A HOH 30 N O HOH 1_555 A MN 7 J MN MN 1_555 A HIS 530 A NE2 HIS 284 1_555 86.4 A HOH 30 N O HOH 1_555 A MN 7 J MN MN 1_555 A HOH 602 N O HOH 1_555 98.0 A HIS 530 A NE2 HIS 284 1_555 A MN 7 J MN MN 1_555 A HOH 602 N O HOH 1_555 166.8 A HOH 30 N O HOH 1_555 A MN 7 J MN MN 1_555 B DA 8 B OP1 DA 8 1_555 101.7 A HIS 530 A NE2 HIS 284 1_555 A MN 7 J MN MN 1_555 B DA 8 B OP1 DA 8 1_555 98.2 A HOH 602 N O HOH 1_555 A MN 7 J MN MN 1_555 B DA 8 B OP1 DA 8 1_555 93.1 A CYS 300 A O CYS 59 1_555 A NA 10 M NA NA 1_555 A ILE 305 A O ILE 64 1_555 76.0 A CYS 300 A O CYS 59 1_555 A NA 10 M NA NA 1_555 A HOH 632 N O HOH 1_555 86.4 A ILE 305 A O ILE 64 1_555 A NA 10 M NA NA 1_555 A HOH 632 N O HOH 1_555 146.4 A CYS 300 A O CYS 59 1_555 A NA 10 M NA NA 1_555 D DC 3 D OP1 DC 3 1_555 139.4 A ILE 305 A O ILE 64 1_555 A NA 10 M NA NA 1_555 D DC 3 D OP1 DC 3 1_555 90.2 A HOH 632 N O HOH 1_555 A NA 10 M NA NA 1_555 D DC 3 D OP1 DC 3 1_555 84.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N MET 387 A N MET 146 A O CYS 425 A O CYS 184 A N VAL 413 A N VAL 172 A O LEU 431 A O LEU 190 A N VAL 430 A N VAL 189 A O ASP 490 A O ASP 244 A O ARG 487 A O ARG 241 A N CYS 477 A N CYS 231 A O VAL 476 A O VAL 230 A N THR 458 A N THR 217 A N SER 526 A N SER 280 A O SER 533 A O SER 287 A N LEU 532 A N LEU 286 A O LEU 551 A O LEU 305 1 A OG1 THR 250 A OG1 THR 9 1 Y 1 A CG2 THR 250 A CG2 THR 9 1 Y 1 A CG GLU 258 A CG GLU 17 1 Y 1 A CD GLU 258 A CD GLU 17 1 Y 1 A OE1 GLU 258 A OE1 GLU 17 1 Y 1 A OE2 GLU 258 A OE2 GLU 17 1 Y 1 A CG LYS 259 A CG LYS 18 1 Y 1 A CD LYS 259 A CD LYS 18 1 Y 1 A CE LYS 259 A CE LYS 18 1 Y 1 A NZ LYS 259 A NZ LYS 18 1 Y 1 A CG LYS 291 A CG LYS 50 1 Y 1 A CD LYS 291 A CD LYS 50 1 Y 1 A CE LYS 291 A CE LYS 50 1 Y 1 A NZ LYS 291 A NZ LYS 50 1 Y 1 A CG GLN 297 A CG GLN 56 1 Y 1 A CD GLN 297 A CD GLN 56 1 Y 1 A OE1 GLN 297 A OE1 GLN 56 1 Y 1 A NE2 GLN 297 A NE2 GLN 56 1 Y 1 A CG ARG 323 A CG ARG 82 1 Y 1 A CD ARG 323 A CD ARG 82 1 Y 1 A NE ARG 323 A NE ARG 82 1 Y 1 A CZ ARG 323 A CZ ARG 82 1 Y 1 A NH1 ARG 323 A NH1 ARG 82 1 Y 1 A NH2 ARG 323 A NH2 ARG 82 1 Y 1 A N LYS 422 B A N LYS 181 0 Y 1 A CG ARG 438 A CG ARG 197 1 Y 1 A CD ARG 438 A CD ARG 197 1 Y 1 A NE ARG 438 A NE ARG 197 1 Y 1 A CZ ARG 438 A CZ ARG 197 1 Y 1 A NH1 ARG 438 A NH1 ARG 197 1 Y 1 A NH2 ARG 438 A NH2 ARG 197 1 Y 1 D O5' DG 1 D O5' DG 1 0 Y 1 A ALA 242 A ALA 1 1 Y 1 A GLN 243 A GLN 2 1 Y 1 A PRO 244 A PRO 3 1 Y 1 A SER 245 A SER 4 1 Y 1 A SER 246 A SER 5 1 Y 1 A GLN 247 A GLN 6 1 Y 1 A LYS 248 A LYS 7 1 Y 1 A VAL 537 A VAL 291 1 Y 1 A ARG 538 A ARG 292 1 Y 1 A ASN 539 A ASN 293 1 Y 1 A THR 540 A THR 294 1 Y 1 A HIS 541 A HIS 295 1 Y 1 A GLY 542 A GLY 296 1 Y 1 A CYS 543 A CYS 297 1 Y 1 A LYS 544 A LYS 298 1 Y 1 A VAL 545 A VAL 299 1 Y 1 A GLY 546 A GLY 300 1 Y 1 A ASN 253 -143.64 39.83 1 A ILE 256 -94.76 -60.38 1 A GLU 330 -68.06 0.53 1 A CYS 415 -102.31 -131.20 1 A ARG 438 -146.93 -19.64 1 A ILE 443 -125.18 -54.13 1 A PHE 444 -18.46 -70.58 1 A ALA 535 -46.68 159.61 1 A ARG 573 A -109.60 55.20 all.par protein.top dna-rna.top water.top nucleic_compounds.to ion.top 0.243 0.007 0.213 0.213 0.213 2.20 25.27 1148 25329 22799 5.0 89.0 RANDOM 558756.52 0.000000 1 RESTRAINED THROUGHOUT 0.0 FOURIER SYNTHESIS Engh & Huber FLAT MODEL 42.6426 0.337211 0.33 0.29 5.00 0.33 0.27 2.20 25.27 202 3089 39 421 2427 0.005 1.0 21.3 0.84 0.344 0.026 0.280 2.34 169 2934 6 5.4 73.0 2.2 50 3PMN 25329 25329 98923 98923 .09 1 17.6 3.9 99.2 2.2 2.28 2.4 2462 .431 2.5 98.2 data collection CrystalClear refinement CNS 1.1 data reduction HKL-2000 data scaling HKL-2000 phasing CNS 1.1 ternary crystal structure of polymerase lambda variant with a GT mispair at the primer terminus with Mn2+ in the active site 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 8 N N 7 N N 7 N N 9 N N 9 N N 8 N N 10 N N 10 N N 10 N N 10 N N A ASN 253 A ASN 12 HELX_P A GLN 270 A GLN 29 1 1 18 A ASP 272 A ASP 31 HELX_P A SER 288 A SER 47 1 2 17 A SER 295 A SER 54 HELX_P A ILE 302 A ILE 61 1 3 8 A GLY 306 A GLY 65 HELX_P A GLY 320 A GLY 79 1 4 15 A LEU 322 A LEU 81 HELX_P A ILE 328 A ILE 87 5 5 7 A SER 331 A SER 90 HELX_P A ASN 340 A ASN 99 1 6 10 A GLY 345 A GLY 104 HELX_P A GLN 355 A GLN 114 1 7 11 A SER 359 A SER 118 HELX_P A ALA 367 A ALA 126 1 8 9 A THR 370 A THR 129 HELX_P A HIS 379 A HIS 138 1 9 10 A SER 381 A SER 140 HELX_P A GLU 385 A GLU 144 5 10 5 A ARG 389 A ARG 148 HELX_P A ALA 405 A ALA 164 1 11 17 A CYS 415 A CYS 174 HELX_P A ARG 420 A ARG 179 1 12 6 A ILE 443 A ILE 202 HELX_P A GLU 454 A GLU 213 1 13 12 A PRO 495 A PRO 249 HELX_P A SER 497 A SER 251 5 14 3 A GLU 498 A GLU 252 HELX_P A GLY 508 A GLY 262 1 15 11 A SER 509 A SER 263 HELX_P A LYS 523 A LYS 277 1 16 15 A THR 555 A THR 309 HELX_P A LEU 563 A LEU 317 1 17 9 A GLU 569 A GLU 323 HELX_P A ARG 573 A ARG 327 5 18 5 metalc 2.306 A 1GC 1 E O2A 1GC 1_555 A MN 2 G MN MN 1_555 metalc 2.005 A 1GC 1 E O2A 1GC 1_555 A MG 576 F MG MG 1_555 metalc 2.009 A 1GC 1 E O1G 1GC 1_555 A MG 576 F MG MG 1_555 metalc 2.034 A 1GC 1 E O2B 1GC 1_555 A MG 576 F MG MG 1_555 metalc 2.068 A MN 2 G MN MN 1_555 A ASP 427 A OD1 ASP 186 1_555 metalc 2.144 A MN 2 G MN MN 1_555 A ASP 429 A OD2 ASP 188 1_555 metalc 2.051 A MN 2 G MN MN 1_555 A ASP 490 A OD2 ASP 244 1_555 metalc 2.385 A MN 2 G MN MN 1_555 A HOH 577 N O HOH 1_555 metalc 2.456 A MN 2 G MN MN 1_555 C DG 6 C O3' DG 6 1_555 metalc 2.366 A NA 5 H NA NA 1_555 A SER 339 A O SER 98 1_555 metalc 2.542 A NA 5 H NA NA 1_555 A ILE 341 A O ILE 100 1_555 metalc 2.300 A NA 5 H NA NA 1_555 A ALA 344 A O ALA 103 1_555 metalc 2.267 A NA 5 H NA NA 1_555 A HOH 580 N O HOH 1_555 metalc 2.418 A NA 5 H NA NA 1_555 C DA 5 C OP1 DA 5 1_555 metalc 2.422 A NA 5 H NA NA 1_555 C HOH 10 P O HOH 1_555 metalc 2.103 A MN 6 I MN MN 1_555 A ASP 382 A OD1 ASP 141 1_555 metalc 2.555 A MN 6 I MN MN 1_555 A HIS 486 A ND1 HIS 240 1_555 metalc 2.597 A MN 6 I MN MN 1_555 A HOH 588 N O HOH 1_555 metalc 2.704 A MN 6 I MN MN 1_555 A HOH 589 N O HOH 1_555 metalc 2.533 A MN 6 I MN MN 1_555 A HOH 590 N O HOH 1_555 metalc 2.511 A MN 7 J MN MN 1_555 A HOH 30 N O HOH 1_555 metalc 2.159 A MN 7 J MN MN 1_555 A HIS 530 A NE2 HIS 284 1_555 metalc 2.734 A MN 7 J MN MN 1_555 A HOH 602 N O HOH 1_555 metalc 2.440 A MN 7 J MN MN 1_555 B DA 8 B OP1 DA 8 1_555 metalc 2.562 A NA 10 M NA NA 1_555 A CYS 300 A O CYS 59 1_555 metalc 2.577 A NA 10 M NA NA 1_555 A ILE 305 A O ILE 64 1_555 metalc 2.347 A NA 10 M NA NA 1_555 A HOH 632 N O HOH 1_555 metalc 3.124 A NA 10 M NA NA 1_555 D DC 3 D OP1 DC 3 1_555 metalc 1.930 A ASP 427 A OD2 ASP 186 1_555 A MG 576 F MG MG 1_555 metalc 2.180 A ASP 429 A OD1 ASP 188 1_555 A MG 576 F MG MG 1_555 metalc 2.133 A MG 576 F MG MG 1_555 A HOH 578 N O HOH 1_555 hydrog WATSON-CRICK B DC 1 B N3 DC 1 1_555 D DG 4 D N1 DG 4 1_555 hydrog WATSON-CRICK B DC 1 B N4 DC 1 1_555 D DG 4 D O6 DG 4 1_555 hydrog WATSON-CRICK B DC 1 B O2 DC 1 1_555 D DG 4 D N2 DG 4 1_555 hydrog WATSON-CRICK B DG 2 B N1 DG 2 1_555 D DC 3 D N3 DC 3 1_555 hydrog WATSON-CRICK B DG 2 B N2 DG 2 1_555 D DC 3 D O2 DC 3 1_555 hydrog WATSON-CRICK B DG 2 B O6 DG 2 1_555 D DC 3 D N4 DC 3 1_555 hydrog WATSON-CRICK B DG 3 B N1 DG 3 1_555 D DC 2 D N3 DC 2 1_555 hydrog WATSON-CRICK B DG 3 B N2 DG 3 1_555 D DC 2 D O2 DC 2 1_555 hydrog WATSON-CRICK B DG 3 B O6 DG 3 1_555 D DC 2 D N4 DC 2 1_555 hydrog WATSON-CRICK B DC 4 B N3 DC 4 1_555 D DG 1 D N1 DG 1 1_555 hydrog WATSON-CRICK B DC 4 B N4 DC 4 1_555 D DG 1 D O6 DG 1 1_555 hydrog WATSON-CRICK B DC 4 B O2 DC 4 1_555 D DG 1 D N2 DG 1 1_555 hydrog TYPE_28_PAIR B DT 6 B N3 DT 6 1_555 C DG 6 C O6 DG 6 1_555 hydrog TYPE_28_PAIR B DT 6 B O2 DT 6 1_555 C DG 6 C N1 DG 6 1_555 hydrog WATSON-CRICK B DT 7 B N3 DT 7 1_555 C DA 5 C N1 DA 5 1_555 hydrog WATSON-CRICK B DT 7 B O4 DT 7 1_555 C DA 5 C N6 DA 5 1_555 hydrog WATSON-CRICK B DA 8 B N1 DA 8 1_555 C DT 4 C N3 DT 4 1_555 hydrog WATSON-CRICK B DA 8 B N6 DA 8 1_555 C DT 4 C O4 DT 4 1_555 hydrog WATSON-CRICK B DC 9 B N3 DC 9 1_555 C DG 3 C N1 DG 3 1_555 hydrog WATSON-CRICK B DC 9 B N4 DC 9 1_555 C DG 3 C O6 DG 3 1_555 hydrog WATSON-CRICK B DC 9 B O2 DC 9 1_555 C DG 3 C N2 DG 3 1_555 hydrog WATSON-CRICK B DT 10 B N3 DT 10 1_555 C DA 2 C N1 DA 2 1_555 hydrog WATSON-CRICK B DT 10 B O4 DT 10 1_555 C DA 2 C N6 DA 2 1_555 hydrog WATSON-CRICK B DG 11 B N1 DG 11 1_555 C DC 1 C N3 DC 1 1_555 hydrog WATSON-CRICK B DG 11 B N2 DG 11 1_555 C DC 1 C O2 DC 1 1_555 hydrog WATSON-CRICK B DG 11 B O6 DG 11 1_555 C DC 1 C N4 DC 1 1_555 LYASE,TRANSFERASE/DNA PROTEIN-DNA COMPLEX, LYASE, TRANSFERASE, DNA, TRANSFERASE-DNA complex A GLY 508 A GLY 262 1 A SER 509 A SER 263 1.69 DPOLL_HUMAN UNP 1 242 Q9UGP5 AQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGH LRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQK AAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPG PGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFR LLGLPYREPAERDW 3PMN PDB 2 3PMN CGGCCTTACTG 3PMN PDB 3 3PMN CAGTAG 3PMN PDB 4 3PMN GCCG 242 575 3PMN 242 575 Q9UGP5 A 1 1 329 1 11 3PMN 1 11 3PMN B 2 1 11 1 6 3PMN 1 6 3PMN C 3 1 6 1 4 3PMN 1 4 3PMN D 4 1 4 1 SER SEE REMARK 999 LYS 463 3PMN A Q9UGP5 UNP 463 222 1 GLN SEE REMARK 999 GLY 464 3PMN A Q9UGP5 UNP 464 223 1 GLU SEE REMARK 999 3PMN A Q9UGP5 UNP 465 1 GLU SEE REMARK 999 3PMN A Q9UGP5 UNP 466 1 ASN SEE REMARK 999 3PMN A Q9UGP5 UNP 467 1 GLY SEE REMARK 999 3PMN A Q9UGP5 UNP 468 1 GLN SEE REMARK 999 3PMN A Q9UGP5 UNP 469 1 GLN SEE REMARK 999 GLU 470 3PMN A Q9UGP5 UNP 470 224 1 GLN SEE REMARK 999 THR 471 3PMN A Q9UGP5 UNP 471 225 2 5 3 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A MET 387 A MET 146 A PRO 388 A PRO 147 A THR 424 A THR 183 A CYS 425 A CYS 184 A LEU 411 A LEU 170 A ALA 414 A ALA 173 A VAL 428 A VAL 187 A THR 433 A THR 192 A ARG 487 A ARG 241 A VAL 493 A VAL 247 A LYS 472 A LYS 226 A CYS 477 A CYS 231 A LEU 457 A LEU 216 A LYS 463 A LYS 222 A MET 525 A MET 279 A LEU 527 A LEU 281 A LEU 532 A LEU 286 A THR 534 A THR 288 A VAL 550 A VAL 304 A LEU 551 A LEU 305 BINDING SITE FOR RESIDUE 1GC A 1 A 1GC 1 Software 25 BINDING SITE FOR RESIDUE MG A 576 A MG 576 Software 5 BINDING SITE FOR RESIDUE MN A 2 A MN 2 Software 7 BINDING SITE FOR RESIDUE NA A 5 A NA 5 Software 6 BINDING SITE FOR RESIDUE MN A 6 A MN 6 Software 6 BINDING SITE FOR RESIDUE MN A 7 A MN 7 Software 4 BINDING SITE FOR RESIDUE CL A 8 A CL 8 Software 2 BINDING SITE FOR RESIDUE CL A 9 A CL 9 Software 1 BINDING SITE FOR RESIDUE NA A 10 A NA 10 Software 5 A MN 2 G MN 25 1_555 A HOH 3 N HOH 25 1_555 A HOH 27 N HOH 25 1_555 A HOH 53 N HOH 25 1_555 A ARG 386 A ARG 145 25 1_555 A GLY 416 A GLY 175 25 1_555 A SER 417 A SER 176 25 1_555 A ARG 420 A ARG 179 25 1_555 A GLY 426 A GLY 185 25 1_555 A ASP 427 A ASP 186 25 1_555 A ASP 429 A ASP 188 25 1_555 A TYR 505 A TYR 259 25 1_555 A PHE 506 A PHE 260 25 1_555 A THR 507 A THR 261 25 1_555 A GLY 508 A GLY 262 25 1_555 A ALA 510 A ALA 264 25 1_555 A ASN 513 A ASN 267 25 1_555 A ARG 517 A ARG 271 25 1_555 A MG 576 F MG 25 1_555 A HOH 577 N HOH 25 1_555 A HOH 578 N HOH 25 1_555 A HOH 629 N HOH 25 1_555 B DC 5 B DC 5 25 1_555 C DG 6 C DG 6 25 1_555 C HOH 72 P HOH 25 1_555 A 1GC 1 E 1GC 5 1_555 A MN 2 G MN 5 1_555 A ASP 427 A ASP 186 5 1_555 A ASP 429 A ASP 188 5 1_555 A HOH 578 N HOH 5 1_555 A 1GC 1 E 1GC 7 1_555 A ASP 427 A ASP 186 7 1_555 A ASP 429 A ASP 188 7 1_555 A ASP 490 A ASP 244 7 1_555 A MG 576 F MG 7 1_555 A HOH 577 N HOH 7 1_555 C DG 6 C DG 6 7 1_555 A SER 339 A SER 98 6 1_555 A ILE 341 A ILE 100 6 1_555 A ALA 344 A ALA 103 6 1_555 A HOH 580 N HOH 6 1_555 C DA 5 C DA 5 6 1_555 C HOH 10 P HOH 6 1_555 A CL 8 K CL 6 1_555 A ASP 382 A ASP 141 6 1_555 A HIS 486 A HIS 240 6 1_555 A HOH 588 N HOH 6 1_555 A HOH 589 N HOH 6 1_555 A HOH 590 N HOH 6 1_555 A HOH 30 N HOH 4 1_555 A HIS 530 A HIS 284 4 1_555 A HOH 602 N HOH 4 1_555 B DA 8 B DA 8 4 1_555 A MN 6 I MN 2 1_555 A HOH 588 N HOH 2 1_555 A ARG 514 A ARG 268 1 1_555 A CYS 300 A CYS 59 5 1_555 A ILE 302 A ILE 61 5 1_555 A ILE 305 A ILE 64 5 1_555 A HOH 632 N HOH 5 1_555 D DC 3 D DC 3 5 1_555 19 P 21 21 21