0.009149
0.005282
0.000000
0.000000
0.010564
0.000000
0.000000
0.000000
0.011072
0.00000
0.00000
0.00000
Marx, A.
Diederichs, K.
Obeid, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
109.301
109.301
90.318
C10 H14 N5 O5 P
315.222
n
2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C5 H11 O6 P
198.111
1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
ABASIC DIDEOXYRIBOSE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H16 N5 O11 P3
475.182
2',3'-dideoxyadenosine triphosphate
non-polymer
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C6 H14 O4
150.173
TRIETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
S
C
N
8
N
O
N
9
N
C
N
10
N
C
N
11
R
C
Y
12
N
N
Y
13
N
C
Y
14
N
N
Y
15
N
C
Y
16
N
C
N
17
N
N
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
O
N
37
N
P
N
38
N
O
N
39
N
O
N
40
N
O
N
41
N
C
N
42
N
C
N
43
R
C
N
44
N
O
N
45
N
C
N
46
S
C
N
47
N
O
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
N
N
60
S
C
N
61
N
C
N
62
N
O
N
63
N
C
N
64
N
O
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
N
N
73
S
C
N
74
N
C
N
75
N
O
N
76
N
C
N
77
N
C
N
78
N
C
N
79
N
N
N
80
N
C
N
81
N
N
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
S
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
S
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
O
N
133
N
P
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
C
N
138
R
C
N
139
N
O
N
140
S
C
N
141
N
O
N
142
N
C
N
143
R
C
Y
144
N
N
Y
145
N
C
Y
146
N
N
Y
147
N
C
Y
148
N
C
N
149
N
N
Y
150
N
N
Y
151
N
C
Y
152
N
N
Y
153
N
C
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
P
N
170
N
O
N
171
N
O
N
172
N
O
N
173
N
C
N
174
R
C
N
175
N
O
N
176
S
C
N
177
N
O
N
178
N
C
N
179
R
C
N
180
N
N
N
181
N
C
N
182
N
O
N
183
N
N
N
184
N
C
N
185
N
N
N
186
N
C
N
187
N
C
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
Y
202
N
N
Y
203
N
C
Y
204
N
N
Y
205
N
C
Y
206
N
C
Y
207
N
C
N
208
N
N
Y
209
N
N
Y
210
N
C
Y
211
N
N
N
212
N
P
N
213
N
P
N
214
N
P
N
215
R
C
N
216
N
O
N
217
N
O
N
218
N
O
N
219
N
C
N
220
N
O
N
221
N
O
N
222
N
O
N
223
N
C
N
224
N
O
N
225
N
O
N
226
N
O
N
227
S
C
N
228
N
O
N
229
N
C
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
O
N
248
N
P
N
249
N
O
N
250
N
O
N
251
N
O
N
252
N
C
N
253
R
C
N
254
N
O
N
255
S
C
N
256
N
O
N
257
N
C
N
258
R
C
Y
259
N
N
Y
260
N
C
Y
261
N
N
Y
262
N
C
N
263
N
C
N
264
N
O
N
265
N
N
N
266
N
C
N
267
N
N
N
268
N
N
Y
269
N
C
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
O
N
285
N
P
N
286
N
O
N
287
N
O
N
288
N
O
N
289
N
C
N
290
R
C
N
291
N
O
N
292
S
C
N
293
N
O
N
294
N
C
N
295
R
C
N
296
N
N
N
297
N
C
N
298
N
O
N
299
N
N
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
O
N
328
N
N
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
C
N
347
N
O
N
348
N
O
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
N
C
N
361
N
C
N
362
N
O
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
C
N
370
N
O
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
N
Y
390
N
C
Y
391
N
C
Y
392
N
N
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
S
C
N
412
N
C
N
413
N
C
N
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
N
434
N
C
N
435
N
C
N
436
N
C
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
N
N
452
S
C
N
453
N
C
N
454
N
O
N
455
N
C
N
456
N
C
N
457
N
C
N
458
N
C
N
459
N
N
N
460
N
O
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
N
N
477
S
C
N
478
N
C
N
479
N
O
N
480
N
C
N
481
N
C
N
482
N
S
N
483
N
C
N
484
N
O
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
MG
N
497
N
C
N
498
N
O
N
499
N
C
N
500
N
O
N
501
N
C
N
502
N
C
N
503
N
O
N
504
N
C
N
505
N
C
N
506
N
O
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
N
N
522
S
C
N
523
N
C
N
524
N
O
N
525
N
C
Y
526
N
C
Y
527
N
C
Y
528
N
C
Y
529
N
C
Y
530
N
C
Y
531
N
C
N
532
N
O
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
N
N
545
S
C
N
546
N
C
N
547
N
O
N
548
N
C
N
549
N
C
N
550
N
C
N
551
N
O
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
N
N
562
S
C
N
563
N
C
N
564
N
O
N
565
N
C
N
566
N
O
N
567
N
O
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
N
N
576
S
C
N
577
N
C
N
578
N
O
N
579
R
C
N
580
N
O
N
581
N
C
N
582
N
O
N
583
N
H
N
584
N
H
N
585
N
H
N
586
N
H
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
N
N
593
S
C
N
594
N
C
N
595
N
O
N
596
N
C
Y
597
N
C
Y
598
N
C
Y
599
N
C
Y
600
N
N
Y
601
N
C
Y
602
N
C
Y
603
N
C
Y
604
N
C
Y
605
N
C
N
606
N
O
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
H
N
612
N
H
N
613
N
H
N
614
N
H
N
615
N
H
N
616
N
H
N
617
N
H
N
618
N
H
N
619
N
N
N
620
S
C
N
621
N
C
N
622
N
O
N
623
N
C
Y
624
N
C
Y
625
N
C
Y
626
N
C
Y
627
N
C
Y
628
N
C
Y
629
N
C
N
630
N
O
N
631
N
O
N
632
N
H
N
633
N
H
N
634
N
H
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
H
N
639
N
H
N
640
N
H
N
641
N
H
N
642
N
H
N
643
N
N
N
644
S
C
N
645
N
C
N
646
N
O
N
647
N
C
N
648
N
C
N
649
N
C
N
650
N
O
N
651
N
H
N
652
N
H
N
653
N
H
N
654
N
H
N
655
N
H
N
656
N
H
N
657
N
H
N
658
N
H
N
659
N
H
N
660
N
H
N
661
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
Y
23
N
sing
Y
24
N
sing
Y
25
N
doub
N
26
N
sing
Y
27
N
sing
Y
28
N
sing
Y
29
N
doub
N
30
N
sing
Y
31
N
doub
N
32
N
sing
N
33
N
sing
Y
34
N
sing
Y
35
N
doub
N
36
N
sing
Y
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
sing
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
Y
158
N
sing
Y
159
N
doub
N
160
N
sing
Y
161
N
doub
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
doub
N
166
N
sing
Y
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
Y
203
N
doub
Y
204
N
sing
Y
205
N
sing
Y
206
N
doub
Y
207
N
sing
Y
208
N
sing
Y
209
N
doub
Y
210
N
sing
N
211
N
sing
Y
212
N
doub
Y
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
Y
273
N
sing
Y
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
Y
279
N
doub
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
sing
Y
397
N
doub
Y
398
N
doub
N
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
doub
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
doub
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
doub
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
Y
527
N
doub
Y
528
N
sing
Y
529
N
sing
N
530
N
sing
Y
531
N
doub
N
532
N
sing
Y
533
N
doub
N
534
N
sing
Y
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
doub
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
doub
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
doub
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
doub
N
592
N
sing
N
593
N
sing
N
594
N
sing
N
595
N
sing
Y
596
N
doub
Y
597
N
sing
Y
598
N
sing
N
599
N
sing
Y
600
N
doub
Y
601
N
sing
Y
602
N
sing
N
603
N
sing
Y
604
N
sing
Y
605
N
doub
N
606
N
sing
Y
607
N
doub
N
608
N
sing
Y
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
sing
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
sing
N
618
N
sing
N
619
N
doub
N
620
N
sing
N
621
N
sing
N
622
N
sing
N
623
N
sing
Y
624
N
doub
Y
625
N
sing
Y
626
N
sing
N
627
N
sing
Y
628
N
doub
N
629
N
sing
Y
630
N
doub
N
631
N
sing
Y
632
N
sing
N
633
N
sing
N
634
N
sing
N
635
N
sing
N
636
N
sing
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
doub
N
644
N
sing
N
645
N
sing
N
646
N
sing
N
647
N
sing
N
648
N
sing
N
649
N
sing
N
650
N
sing
N
651
N
sing
N
652
N
sing
N
653
N
sing
N
654
N
sing
GE
Chembiochem
1439-4227
12
1574
1580
10.1002/cbic.201000783
21480455
Learning from Directed Evolution: Thermus aquaticus DNA Polymerase Mutants with Translesion Synthesis Activity.
2011
10.2210/pdb3po5/pdb
pdb_00003po5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Dynamically bendable mirror, LN2 cooled fixed-exit, Si(111) monochromator
PIXEL
2010-04-22
PSI PILATUS 6M
LN2 cooled fixed-exit, Si(111) monochromator
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
X06SA
SLS
1.0000
SYNCHROTRON
SLS BEAMLINE X06SA
60950.973
DNA polymerase I
2.7.7.7
Klenow Fragment
I614K, M747K
1
man
polymer
3641.395
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(2DA))-3')
DNA primer
1
syn
polymer
3850.472
DNA (5'-D(P*(3DR)P*TP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3')
DNA template
1
syn
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
150.173
TRIETHYLENE GLYCOL
2
syn
non-polymer
475.182
2',3'-dideoxyadenosine triphosphate
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
131
nat
water
Taq polymerase 1
no
no
ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDD
PMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLD
VAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKI
LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYS
QKELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAF
IERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERKAFNMPVQGTAADLMKLAMVKLFPRL
EEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE
ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDD
PMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLD
VAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKI
LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYS
QKELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAF
IERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERKAFNMPVQGTAADLMKLAMVKLFPRL
EEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE
A
polypeptide(L)
no
yes
(DG)(DA)(DC)(DC)(DA)(DC)(DG)(DG)(DC)(DG)(DC)(2DA)
GACCACGGCGCA
B
polydeoxyribonucleotide
no
yes
(3DR)(DT)(DG)(DC)(DG)(DC)(DC)(DG)(DT)(DG)(DG)(DT)(DC)
NTGCGCCGTGGTC
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
pol1, polA, polI
271
Thermus aquaticus
562
Escherichia coli
BL21DE3
plasmid
pET21-b
1
2.28
45.95
VAPOR DIFFUSION, HANGING DROP
8.8
0.05M Tris HCl, 0.2M NH4Cl, 0.01M CaCl2, 28% PEG 4000, pH 8.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
Tris HCl
1
NH4Cl
1
CaCl2
1
PEG 4000
1
Tris HCl
2
NH4Cl
2
CaCl2
2
PEG 4000
2
-6.394
1
19
B
101
C
216
5.812
B_DG101:DC216_C
1
-4.761
-0.528
-0.082
-0.048
6.877
1
20
B
102
C
215
-0.027
B_DA102:DT215_C
2
-4.153
-0.258
-0.168
-0.299
6.403
1
19
B
103
C
214
0.619
B_DC103:DG214_C
3
-6.756
0.697
-0.352
-0.395
-3.030
1
19
B
104
C
213
0.290
B_DC104:DG213_C
4
-5.370
-0.258
-0.114
-0.292
-1.725
1
20
B
105
C
212
0.530
B_DA105:DT212_C
5
-13.848
0.332
0.016
-0.040
-4.661
1
19
B
106
C
211
0.470
B_DC106:DG211_C
6
-10.228
0.140
0.098
-0.115
5.414
1
19
B
107
C
210
4.010
B_DG107:DC210_C
7
-26.148
-0.275
0.124
-0.087
-2.620
1
19
B
108
C
209
3.370
B_DG108:DC209_C
8
-6.224
0.055
0.071
0.008
5.682
1
19
B
109
C
208
0.232
B_DC109:DG208_C
9
5.422
0.101
-0.361
-0.029
8.065
1
19
B
110
C
207
2.136
B_DG110:DC207_C
10
-12.629
-0.078
0.291
-0.095
13.966
1
19
B
111
C
206
5.577
B_DC111:DG206_C
11
-8.159
0.413
-0.287
-0.101
18.919
1
20
B
112
C
205
2.284
B_2DA112:DT205_C
12
-10.679
0.527
0.152
-0.190
2.830
32.999
B
B
101
102
10.404
C
C
216
215
3.016
5.880
-0.520
-0.806
BB_DG101DA102:DT215DC216_CC
1
0.020
-0.036
32.485
-2.318
0.919
3.189
37.308
B
B
102
103
8.201
C
C
215
214
3.309
5.230
0.449
-0.634
BB_DA102DC103:DG214DT215_CC
2
-0.292
0.458
36.952
-1.681
-0.741
2.812
25.520
B
B
103
104
21.670
C
C
214
213
3.369
9.299
-1.078
-1.308
BB_DC103DC104:DG213DG214_CC
3
-4.813
11.216
23.306
-5.588
1.080
3.190
38.285
B
B
104
105
12.102
C
C
213
212
3.231
7.884
-0.596
0.143
BB_DC104DA105:DT212DG213_CC
4
0.341
-0.523
37.493
-0.763
0.951
3.357
30.000
B
B
105
106
2.553
C
C
212
211
3.379
1.321
0.200
-0.435
BB_DA105DC106:DG211DT212_CC
5
0.106
-0.205
29.972
-1.121
-0.363
3.153
33.293
B
B
106
107
21.559
C
C
211
210
3.137
12.083
0.303
0.597
BB_DC106DG107:DC210DG211_CC
6
1.037
-1.850
31.064
-0.967
-0.357
3.439
35.115
B
B
107
108
-2.269
C
C
210
209
3.361
-1.367
1.109
-0.296
BB_DG107DG108:DC209DC210_CC
7
2.518
-4.178
35.002
-0.278
-1.446
2.955
29.936
B
B
108
109
16.063
C
C
209
208
3.164
8.135
0.645
-0.590
BB_DG108DC109:DG208DC209_CC
8
6.361
-12.561
28.137
-2.767
0.022
3.312
42.319
B
B
109
110
9.889
C
C
208
207
3.339
7.053
-0.336
0.136
BB_DC109DG110:DC207DG208_CC
9
-9.467
13.274
40.711
-0.560
-0.540
2.476
29.636
B
B
110
111
25.702
C
C
207
206
3.381
12.709
-0.215
-1.293
BB_DG110DC111:DG206DC207_CC
10
3.294
-6.662
26.628
-5.064
1.077
3.150
32.366
B
B
111
112
9.453
C
C
206
205
3.366
5.245
-0.192
-1.134
BB_DC1112DA112:DT205DG206_CC
11
-1.565
2.820
31.912
-2.963
0.067
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-06-15
1
1
2011-07-13
1
2
2017-11-08
1
3
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2010-11-22
REL
REL
MG
MAGNESIUM ION
PGE
TRIETHYLENE GLYCOL
DDS
2',3'-dideoxyadenosine triphosphate
GOL
GLYCEROL
HOH
water
3LWL
PDB entry 3LWL
PDB
experimental model
MG
1
4
MG
MG
1
A
PGE
833
5
PGE
PGE
833
A
PGE
834
5
PGE
PGE
834
A
DDS
835
6
DDS
DDS
835
A
GOL
1
7
GOL
GOL
1
B
HOH
3
8
HOH
HOH
3
A
HOH
4
8
HOH
HOH
4
A
HOH
6
8
HOH
HOH
6
A
HOH
9
8
HOH
HOH
9
A
HOH
10
8
HOH
HOH
10
A
HOH
12
8
HOH
HOH
12
A
HOH
13
8
HOH
HOH
13
A
HOH
14
8
HOH
HOH
14
A
HOH
15
8
HOH
HOH
15
A
HOH
16
8
HOH
HOH
16
A
HOH
19
8
HOH
HOH
19
A
HOH
20
8
HOH
HOH
20
A
HOH
21
8
HOH
HOH
21
A
HOH
23
8
HOH
HOH
23
A
HOH
24
8
HOH
HOH
24
A
HOH
25
8
HOH
HOH
25
A
HOH
28
8
HOH
HOH
28
A
HOH
29
8
HOH
HOH
29
A
HOH
32
8
HOH
HOH
32
A
HOH
33
8
HOH
HOH
33
A
HOH
34
8
HOH
HOH
34
A
HOH
35
8
HOH
HOH
35
A
HOH
37
8
HOH
HOH
37
A
HOH
38
8
HOH
HOH
38
A
HOH
39
8
HOH
HOH
39
A
HOH
40
8
HOH
HOH
40
A
HOH
42
8
HOH
HOH
42
A
HOH
43
8
HOH
HOH
43
A
HOH
44
8
HOH
HOH
44
A
HOH
45
8
HOH
HOH
45
A
HOH
46
8
HOH
HOH
46
A
HOH
47
8
HOH
HOH
47
A
HOH
48
8
HOH
HOH
48
A
HOH
49
8
HOH
HOH
49
A
HOH
50
8
HOH
HOH
50
A
HOH
52
8
HOH
HOH
52
A
HOH
53
8
HOH
HOH
53
A
HOH
54
8
HOH
HOH
54
A
HOH
55
8
HOH
HOH
55
A
HOH
58
8
HOH
HOH
58
A
HOH
61
8
HOH
HOH
61
A
HOH
62
8
HOH
HOH
62
A
HOH
64
8
HOH
HOH
64
A
HOH
66
8
HOH
HOH
66
A
HOH
69
8
HOH
HOH
69
A
HOH
70
8
HOH
HOH
70
A
HOH
71
8
HOH
HOH
71
A
HOH
72
8
HOH
HOH
72
A
HOH
73
8
HOH
HOH
73
A
HOH
74
8
HOH
HOH
74
A
HOH
75
8
HOH
HOH
75
A
HOH
77
8
HOH
HOH
77
A
HOH
79
8
HOH
HOH
79
A
HOH
80
8
HOH
HOH
80
A
HOH
81
8
HOH
HOH
81
A
HOH
82
8
HOH
HOH
82
A
HOH
83
8
HOH
HOH
83
A
HOH
84
8
HOH
HOH
84
A
HOH
85
8
HOH
HOH
85
A
HOH
86
8
HOH
HOH
86
A
HOH
87
8
HOH
HOH
87
A
HOH
88
8
HOH
HOH
88
A
HOH
89
8
HOH
HOH
89
A
HOH
90
8
HOH
HOH
90
A
HOH
91
8
HOH
HOH
91
A
HOH
92
8
HOH
HOH
92
A
HOH
93
8
HOH
HOH
93
A
HOH
94
8
HOH
HOH
94
A
HOH
95
8
HOH
HOH
95
A
HOH
96
8
HOH
HOH
96
A
HOH
98
8
HOH
HOH
98
A
HOH
99
8
HOH
HOH
99
A
HOH
102
8
HOH
HOH
102
A
HOH
103
8
HOH
HOH
103
A
HOH
104
8
HOH
HOH
104
A
HOH
108
8
HOH
HOH
108
A
HOH
109
8
HOH
HOH
109
A
HOH
111
8
HOH
HOH
111
A
HOH
112
8
HOH
HOH
112
A
HOH
113
8
HOH
HOH
113
A
HOH
114
8
HOH
HOH
114
A
HOH
115
8
HOH
HOH
115
A
HOH
117
8
HOH
HOH
117
A
HOH
118
8
HOH
HOH
118
A
HOH
120
8
HOH
HOH
120
A
HOH
121
8
HOH
HOH
121
A
HOH
122
8
HOH
HOH
122
A
HOH
123
8
HOH
HOH
123
A
HOH
124
8
HOH
HOH
124
A
HOH
125
8
HOH
HOH
125
A
HOH
126
8
HOH
HOH
126
A
HOH
128
8
HOH
HOH
128
A
HOH
129
8
HOH
HOH
129
A
HOH
130
8
HOH
HOH
130
A
HOH
131
8
HOH
HOH
131
A
HOH
836
8
HOH
HOH
836
A
HOH
7
8
HOH
HOH
7
B
HOH
8
8
HOH
HOH
8
B
HOH
18
8
HOH
HOH
18
B
HOH
22
8
HOH
HOH
22
B
HOH
36
8
HOH
HOH
36
B
HOH
51
8
HOH
HOH
51
B
HOH
57
8
HOH
HOH
57
B
HOH
59
8
HOH
HOH
59
B
HOH
60
8
HOH
HOH
60
B
HOH
63
8
HOH
HOH
63
B
HOH
97
8
HOH
HOH
97
B
HOH
113
8
HOH
HOH
113
B
HOH
2
8
HOH
HOH
2
C
HOH
5
8
HOH
HOH
5
C
HOH
11
8
HOH
HOH
11
C
HOH
17
8
HOH
HOH
17
C
HOH
26
8
HOH
HOH
26
C
HOH
27
8
HOH
HOH
27
C
HOH
30
8
HOH
HOH
30
C
HOH
31
8
HOH
HOH
31
C
HOH
41
8
HOH
HOH
41
C
HOH
56
8
HOH
HOH
56
C
HOH
65
8
HOH
HOH
65
C
HOH
67
8
HOH
HOH
67
C
HOH
68
8
HOH
HOH
68
C
HOH
76
8
HOH
HOH
76
C
HOH
78
8
HOH
HOH
78
C
HOH
100
8
HOH
HOH
100
C
HOH
101
8
HOH
HOH
101
C
HOH
105
8
HOH
HOH
105
C
HOH
107
8
HOH
HOH
107
C
HOH
110
8
HOH
HOH
110
C
HOH
116
8
HOH
HOH
116
C
HOH
119
8
HOH
HOH
119
C
HOH
127
8
HOH
HOH
127
C
n
1
293
A
n
2
294
A
GLU
295
n
3
GLU
295
A
GLU
296
n
4
GLU
296
A
ALA
297
n
5
ALA
297
A
PRO
298
n
6
PRO
298
A
TRP
299
n
7
TRP
299
A
PRO
300
n
8
PRO
300
A
PRO
301
n
9
PRO
301
A
PRO
302
n
10
PRO
302
A
GLU
303
n
11
GLU
303
A
GLY
304
n
12
GLY
304
A
ALA
305
n
13
ALA
305
A
PHE
306
n
14
PHE
306
A
VAL
307
n
15
VAL
307
A
GLY
308
n
16
GLY
308
A
PHE
309
n
17
PHE
309
A
VAL
310
n
18
VAL
310
A
LEU
311
n
19
LEU
311
A
SER
312
n
20
SER
312
A
ARG
313
n
21
ARG
313
A
LYS
314
n
22
LYS
314
A
GLU
315
n
23
GLU
315
A
PRO
316
n
24
PRO
316
A
MET
317
n
25
MET
317
A
TRP
318
n
26
TRP
318
A
ALA
319
n
27
ALA
319
A
ASP
320
n
28
ASP
320
A
LEU
321
n
29
LEU
321
A
LEU
322
n
30
LEU
322
A
ALA
323
n
31
ALA
323
A
LEU
324
n
32
LEU
324
A
ALA
325
n
33
ALA
325
A
ALA
326
n
34
ALA
326
A
ALA
327
n
35
ALA
327
A
ARG
328
n
36
ARG
328
A
GLY
329
n
37
GLY
329
A
GLY
330
n
38
GLY
330
A
ARG
331
n
39
ARG
331
A
VAL
332
n
40
VAL
332
A
HIS
333
n
41
HIS
333
A
ARG
334
n
42
ARG
334
A
ALA
335
n
43
ALA
335
A
PRO
336
n
44
PRO
336
A
GLU
337
n
45
GLU
337
A
PRO
338
n
46
PRO
338
A
TYR
339
n
47
TYR
339
A
LYS
340
n
48
LYS
340
A
ALA
341
n
49
ALA
341
A
LEU
342
n
50
LEU
342
A
ARG
343
n
51
ARG
343
A
ASP
344
n
52
ASP
344
A
LEU
345
n
53
LEU
345
A
LYS
346
n
54
LYS
346
A
GLU
347
n
55
GLU
347
A
ALA
348
n
56
ALA
348
A
ARG
349
n
57
ARG
349
A
GLY
350
n
58
GLY
350
A
LEU
351
n
59
LEU
351
A
LEU
352
n
60
LEU
352
A
ALA
353
n
61
ALA
353
A
LYS
354
n
62
LYS
354
A
ASP
355
n
63
ASP
355
A
LEU
356
n
64
LEU
356
A
SER
357
n
65
SER
357
A
VAL
358
n
66
VAL
358
A
LEU
359
n
67
LEU
359
A
ALA
360
n
68
ALA
360
A
LEU
361
n
69
LEU
361
A
ARG
362
n
70
ARG
362
A
GLU
363
n
71
GLU
363
A
GLY
364
n
72
GLY
364
A
LEU
365
n
73
LEU
365
A
GLY
366
n
74
GLY
366
A
LEU
367
n
75
LEU
367
A
PRO
368
n
76
PRO
368
A
PRO
369
n
77
PRO
369
A
GLY
370
n
78
GLY
370
A
ASP
371
n
79
ASP
371
A
ASP
372
n
80
ASP
372
A
PRO
373
n
81
PRO
373
A
MET
374
n
82
MET
374
A
LEU
375
n
83
LEU
375
A
LEU
376
n
84
LEU
376
A
ALA
377
n
85
ALA
377
A
TYR
378
n
86
TYR
378
A
LEU
379
n
87
LEU
379
A
LEU
380
n
88
LEU
380
A
ASP
381
n
89
ASP
381
A
PRO
382
n
90
PRO
382
A
SER
383
n
91
SER
383
A
ASN
384
n
92
ASN
384
A
THR
385
n
93
THR
385
A
THR
386
n
94
THR
386
A
PRO
387
n
95
PRO
387
A
GLU
388
n
96
GLU
388
A
GLY
389
n
97
GLY
389
A
VAL
390
n
98
VAL
390
A
ALA
391
n
99
ALA
391
A
ARG
392
n
100
ARG
392
A
ARG
393
n
101
ARG
393
A
TYR
394
n
102
TYR
394
A
GLY
395
n
103
GLY
395
A
GLY
396
n
104
GLY
396
A
GLU
397
n
105
GLU
397
A
TRP
398
n
106
TRP
398
A
THR
399
n
107
THR
399
A
GLU
400
n
108
GLU
400
A
GLU
401
n
109
GLU
401
A
ALA
402
n
110
ALA
402
A
GLY
403
n
111
GLY
403
A
GLU
404
n
112
GLU
404
A
ARG
405
n
113
ARG
405
A
ALA
406
n
114
ALA
406
A
ALA
407
n
115
ALA
407
A
LEU
408
n
116
LEU
408
A
SER
409
n
117
SER
409
A
GLU
410
n
118
GLU
410
A
ARG
411
n
119
ARG
411
A
LEU
412
n
120
LEU
412
A
PHE
413
n
121
PHE
413
A
ALA
414
n
122
ALA
414
A
ASN
415
n
123
ASN
415
A
LEU
416
n
124
LEU
416
A
TRP
417
n
125
TRP
417
A
GLY
418
n
126
GLY
418
A
ARG
419
n
127
ARG
419
A
LEU
420
n
128
LEU
420
A
GLU
421
n
129
GLU
421
A
GLY
422
n
130
GLY
422
A
GLU
423
n
131
GLU
423
A
GLU
424
n
132
GLU
424
A
ARG
425
n
133
ARG
425
A
LEU
426
n
134
LEU
426
A
LEU
427
n
135
LEU
427
A
TRP
428
n
136
TRP
428
A
LEU
429
n
137
LEU
429
A
TYR
430
n
138
TYR
430
A
ARG
431
n
139
ARG
431
A
GLU
432
n
140
GLU
432
A
VAL
433
n
141
VAL
433
A
GLU
434
n
142
GLU
434
A
ARG
435
n
143
ARG
435
A
PRO
436
n
144
PRO
436
A
LEU
437
n
145
LEU
437
A
SER
438
n
146
SER
438
A
ALA
439
n
147
ALA
439
A
VAL
440
n
148
VAL
440
A
LEU
441
n
149
LEU
441
A
ALA
442
n
150
ALA
442
A
HIS
443
n
151
HIS
443
A
MET
444
n
152
MET
444
A
GLU
445
n
153
GLU
445
A
ALA
446
n
154
ALA
446
A
THR
447
n
155
THR
447
A
GLY
448
n
156
GLY
448
A
VAL
449
n
157
VAL
449
A
ARG
450
n
158
ARG
450
A
LEU
451
n
159
LEU
451
A
ASP
452
n
160
ASP
452
A
VAL
453
n
161
VAL
453
A
ALA
454
n
162
ALA
454
A
TYR
455
n
163
TYR
455
A
LEU
456
n
164
LEU
456
A
ARG
457
n
165
ARG
457
A
ALA
458
n
166
ALA
458
A
LEU
459
n
167
LEU
459
A
SER
460
n
168
SER
460
A
LEU
461
n
169
LEU
461
A
GLU
462
n
170
GLU
462
A
VAL
463
n
171
VAL
463
A
ALA
464
n
172
ALA
464
A
GLU
465
n
173
GLU
465
A
GLU
466
n
174
GLU
466
A
ILE
467
n
175
ILE
467
A
ALA
468
n
176
ALA
468
A
ARG
469
n
177
ARG
469
A
LEU
470
n
178
LEU
470
A
GLU
471
n
179
GLU
471
A
ALA
472
n
180
ALA
472
A
GLU
473
n
181
GLU
473
A
VAL
474
n
182
VAL
474
A
PHE
475
n
183
PHE
475
A
ARG
476
n
184
ARG
476
A
LEU
477
n
185
LEU
477
A
ALA
478
n
186
ALA
478
A
GLY
479
n
187
GLY
479
A
HIS
480
n
188
HIS
480
A
PRO
481
n
189
PRO
481
A
PHE
482
n
190
PHE
482
A
ASN
483
n
191
ASN
483
A
LEU
484
n
192
LEU
484
A
ASN
485
n
193
ASN
485
A
SER
486
n
194
SER
486
A
ARG
487
n
195
ARG
487
A
ASP
488
n
196
ASP
488
A
GLN
489
n
197
GLN
489
A
LEU
490
n
198
LEU
490
A
GLU
491
n
199
GLU
491
A
ARG
492
n
200
ARG
492
A
VAL
493
n
201
VAL
493
A
LEU
494
n
202
LEU
494
A
PHE
495
n
203
PHE
495
A
ASP
496
n
204
ASP
496
A
GLU
497
n
205
GLU
497
A
LEU
498
n
206
LEU
498
A
GLY
499
n
207
GLY
499
A
LEU
500
n
208
LEU
500
A
PRO
501
n
209
PRO
501
A
ALA
502
n
210
ALA
502
A
ILE
503
n
211
ILE
503
A
GLY
504
n
212
GLY
504
A
LYS
505
n
213
LYS
505
A
THR
506
n
214
THR
506
A
GLU
507
n
215
GLU
507
A
LYS
508
n
216
LYS
508
A
THR
509
n
217
THR
509
A
GLY
510
n
218
GLY
510
A
LYS
511
n
219
LYS
511
A
ARG
512
n
220
ARG
512
A
SER
513
n
221
SER
513
A
THR
514
n
222
THR
514
A
SER
515
n
223
SER
515
A
ALA
516
n
224
ALA
516
A
ALA
517
n
225
ALA
517
A
VAL
518
n
226
VAL
518
A
LEU
519
n
227
LEU
519
A
GLU
520
n
228
GLU
520
A
ALA
521
n
229
ALA
521
A
LEU
522
n
230
LEU
522
A
ARG
523
n
231
ARG
523
A
GLU
524
n
232
GLU
524
A
ALA
525
n
233
ALA
525
A
HIS
526
n
234
HIS
526
A
PRO
527
n
235
PRO
527
A
ILE
528
n
236
ILE
528
A
VAL
529
n
237
VAL
529
A
GLU
530
n
238
GLU
530
A
LYS
531
n
239
LYS
531
A
ILE
532
n
240
ILE
532
A
LEU
533
n
241
LEU
533
A
GLN
534
n
242
GLN
534
A
TYR
535
n
243
TYR
535
A
ARG
536
n
244
ARG
536
A
GLU
537
n
245
GLU
537
A
LEU
538
n
246
LEU
538
A
THR
539
n
247
THR
539
A
LYS
540
n
248
LYS
540
A
LEU
541
n
249
LEU
541
A
LYS
542
n
250
LYS
542
A
SER
543
n
251
SER
543
A
THR
544
n
252
THR
544
A
TYR
545
n
253
TYR
545
A
ILE
546
n
254
ILE
546
A
ASP
547
n
255
ASP
547
A
PRO
548
n
256
PRO
548
A
LEU
549
n
257
LEU
549
A
PRO
550
n
258
PRO
550
A
ASP
551
n
259
ASP
551
A
LEU
552
n
260
LEU
552
A
ILE
553
n
261
ILE
553
A
HIS
554
n
262
HIS
554
A
PRO
555
n
263
PRO
555
A
ARG
556
n
264
ARG
556
A
THR
557
n
265
THR
557
A
GLY
558
n
266
GLY
558
A
ARG
559
n
267
ARG
559
A
LEU
560
n
268
LEU
560
A
HIS
561
n
269
HIS
561
A
THR
562
n
270
THR
562
A
ARG
563
n
271
ARG
563
A
PHE
564
n
272
PHE
564
A
ASN
565
n
273
ASN
565
A
GLN
566
n
274
GLN
566
A
THR
567
n
275
THR
567
A
ALA
568
n
276
ALA
568
A
THR
569
n
277
THR
569
A
ALA
570
n
278
ALA
570
A
THR
571
n
279
THR
571
A
GLY
572
n
280
GLY
572
A
ARG
573
n
281
ARG
573
A
LEU
574
n
282
LEU
574
A
SER
575
n
283
SER
575
A
SER
576
n
284
SER
576
A
SER
577
n
285
SER
577
A
ASP
578
n
286
ASP
578
A
PRO
579
n
287
PRO
579
A
ASN
580
n
288
ASN
580
A
LEU
581
n
289
LEU
581
A
GLN
582
n
290
GLN
582
A
ASN
583
n
291
ASN
583
A
ILE
584
n
292
ILE
584
A
PRO
585
n
293
PRO
585
A
VAL
586
n
294
VAL
586
A
ARG
587
n
295
ARG
587
A
THR
588
n
296
THR
588
A
PRO
589
n
297
PRO
589
A
LEU
590
n
298
LEU
590
A
GLY
591
n
299
GLY
591
A
GLN
592
n
300
GLN
592
A
ARG
593
n
301
ARG
593
A
ILE
594
n
302
ILE
594
A
ARG
595
n
303
ARG
595
A
ARG
596
n
304
ARG
596
A
ALA
597
n
305
ALA
597
A
PHE
598
n
306
PHE
598
A
ILE
599
n
307
ILE
599
A
ALA
600
n
308
ALA
600
A
GLU
601
n
309
GLU
601
A
GLU
602
n
310
GLU
602
A
GLY
603
n
311
GLY
603
A
TRP
604
n
312
TRP
604
A
LEU
605
n
313
LEU
605
A
LEU
606
n
314
LEU
606
A
VAL
607
n
315
VAL
607
A
ALA
608
n
316
ALA
608
A
LEU
609
n
317
LEU
609
A
ASP
610
n
318
ASP
610
A
TYR
611
n
319
TYR
611
A
SER
612
n
320
SER
612
A
GLN
613
n
321
GLN
613
A
LYS
614
n
322
LYS
614
A
GLU
615
n
323
GLU
615
A
LEU
616
n
324
LEU
616
A
ARG
617
n
325
ARG
617
A
VAL
618
n
326
VAL
618
A
LEU
619
n
327
LEU
619
A
ALA
620
n
328
ALA
620
A
HIS
621
n
329
HIS
621
A
LEU
622
n
330
LEU
622
A
SER
623
n
331
SER
623
A
GLY
624
n
332
GLY
624
A
ASP
625
n
333
ASP
625
A
GLU
626
n
334
GLU
626
A
ASN
627
n
335
ASN
627
A
LEU
628
n
336
LEU
628
A
ILE
629
n
337
ILE
629
A
ARG
630
n
338
ARG
630
A
VAL
631
n
339
VAL
631
A
PHE
632
n
340
PHE
632
A
GLN
633
n
341
GLN
633
A
GLU
634
n
342
GLU
634
A
GLY
635
n
343
GLY
635
A
ARG
636
n
344
ARG
636
A
ASP
637
n
345
ASP
637
A
ILE
638
n
346
ILE
638
A
HIS
639
n
347
HIS
639
A
THR
640
n
348
THR
640
A
GLU
641
n
349
GLU
641
A
THR
642
n
350
THR
642
A
ALA
643
n
351
ALA
643
A
SER
644
n
352
SER
644
A
TRP
645
n
353
TRP
645
A
n
354
646
A
n
355
647
A
n
356
648
A
n
357
649
A
n
358
650
A
n
359
651
A
n
360
652
A
n
361
653
A
n
362
654
A
n
363
655
A
PRO
656
n
364
PRO
656
A
LEU
657
n
365
LEU
657
A
MET
658
n
366
MET
658
A
ARG
659
n
367
ARG
659
A
ARG
660
n
368
ARG
660
A
ALA
661
n
369
ALA
661
A
ALA
662
n
370
ALA
662
A
LYS
663
n
371
LYS
663
A
THR
664
n
372
THR
664
A
ILE
665
n
373
ILE
665
A
ASN
666
n
374
ASN
666
A
PHE
667
n
375
PHE
667
A
GLY
668
n
376
GLY
668
A
VAL
669
n
377
VAL
669
A
LEU
670
n
378
LEU
670
A
TYR
671
n
379
TYR
671
A
GLY
672
n
380
GLY
672
A
MET
673
n
381
MET
673
A
SER
674
n
382
SER
674
A
ALA
675
n
383
ALA
675
A
HIS
676
n
384
HIS
676
A
ARG
677
n
385
ARG
677
A
LEU
678
n
386
LEU
678
A
SER
679
n
387
SER
679
A
GLN
680
n
388
GLN
680
A
GLU
681
n
389
GLU
681
A
LEU
682
n
390
LEU
682
A
ALA
683
n
391
ALA
683
A
ILE
684
n
392
ILE
684
A
PRO
685
n
393
PRO
685
A
TYR
686
n
394
TYR
686
A
GLU
687
n
395
GLU
687
A
GLU
688
n
396
GLU
688
A
ALA
689
n
397
ALA
689
A
GLN
690
n
398
GLN
690
A
ALA
691
n
399
ALA
691
A
PHE
692
n
400
PHE
692
A
ILE
693
n
401
ILE
693
A
GLU
694
n
402
GLU
694
A
ARG
695
n
403
ARG
695
A
TYR
696
n
404
TYR
696
A
PHE
697
n
405
PHE
697
A
GLN
698
n
406
GLN
698
A
SER
699
n
407
SER
699
A
PHE
700
n
408
PHE
700
A
PRO
701
n
409
PRO
701
A
LYS
702
n
410
LYS
702
A
VAL
703
n
411
VAL
703
A
ARG
704
n
412
ARG
704
A
ALA
705
n
413
ALA
705
A
TRP
706
n
414
TRP
706
A
ILE
707
n
415
ILE
707
A
GLU
708
n
416
GLU
708
A
LYS
709
n
417
LYS
709
A
THR
710
n
418
THR
710
A
LEU
711
n
419
LEU
711
A
GLU
712
n
420
GLU
712
A
GLU
713
n
421
GLU
713
A
GLY
714
n
422
GLY
714
A
ARG
715
n
423
ARG
715
A
ARG
716
n
424
ARG
716
A
ARG
717
n
425
ARG
717
A
GLY
718
n
426
GLY
718
A
TYR
719
n
427
TYR
719
A
VAL
720
n
428
VAL
720
A
GLU
721
n
429
GLU
721
A
THR
722
n
430
THR
722
A
LEU
723
n
431
LEU
723
A
PHE
724
n
432
PHE
724
A
GLY
725
n
433
GLY
725
A
ARG
726
n
434
ARG
726
A
ARG
727
n
435
ARG
727
A
ARG
728
n
436
ARG
728
A
TYR
729
n
437
TYR
729
A
VAL
730
n
438
VAL
730
A
PRO
731
n
439
PRO
731
A
ASP
732
n
440
ASP
732
A
LEU
733
n
441
LEU
733
A
GLU
734
n
442
GLU
734
A
ALA
735
n
443
ALA
735
A
ARG
736
n
444
ARG
736
A
VAL
737
n
445
VAL
737
A
LYS
738
n
446
LYS
738
A
SER
739
n
447
SER
739
A
VAL
740
n
448
VAL
740
A
ARG
741
n
449
ARG
741
A
GLU
742
n
450
GLU
742
A
ALA
743
n
451
ALA
743
A
ALA
744
n
452
ALA
744
A
GLU
745
n
453
GLU
745
A
ARG
746
n
454
ARG
746
A
LYS
747
n
455
LYS
747
A
ALA
748
n
456
ALA
748
A
PHE
749
n
457
PHE
749
A
ASN
750
n
458
ASN
750
A
MET
751
n
459
MET
751
A
PRO
752
n
460
PRO
752
A
VAL
753
n
461
VAL
753
A
GLN
754
n
462
GLN
754
A
GLY
755
n
463
GLY
755
A
THR
756
n
464
THR
756
A
ALA
757
n
465
ALA
757
A
ALA
758
n
466
ALA
758
A
ASP
759
n
467
ASP
759
A
LEU
760
n
468
LEU
760
A
MET
761
n
469
MET
761
A
LYS
762
n
470
LYS
762
A
LEU
763
n
471
LEU
763
A
ALA
764
n
472
ALA
764
A
MET
765
n
473
MET
765
A
VAL
766
n
474
VAL
766
A
LYS
767
n
475
LYS
767
A
LEU
768
n
476
LEU
768
A
PHE
769
n
477
PHE
769
A
PRO
770
n
478
PRO
770
A
ARG
771
n
479
ARG
771
A
LEU
772
n
480
LEU
772
A
GLU
773
n
481
GLU
773
A
GLU
774
n
482
GLU
774
A
MET
775
n
483
MET
775
A
GLY
776
n
484
GLY
776
A
ALA
777
n
485
ALA
777
A
ARG
778
n
486
ARG
778
A
MET
779
n
487
MET
779
A
LEU
780
n
488
LEU
780
A
LEU
781
n
489
LEU
781
A
GLN
782
n
490
GLN
782
A
VAL
783
n
491
VAL
783
A
HIS
784
n
492
HIS
784
A
ASP
785
n
493
ASP
785
A
GLU
786
n
494
GLU
786
A
LEU
787
n
495
LEU
787
A
VAL
788
n
496
VAL
788
A
LEU
789
n
497
LEU
789
A
GLU
790
n
498
GLU
790
A
ALA
791
n
499
ALA
791
A
PRO
792
n
500
PRO
792
A
LYS
793
n
501
LYS
793
A
GLU
794
n
502
GLU
794
A
ARG
795
n
503
ARG
795
A
ALA
796
n
504
ALA
796
A
GLU
797
n
505
GLU
797
A
ALA
798
n
506
ALA
798
A
VAL
799
n
507
VAL
799
A
ALA
800
n
508
ALA
800
A
ARG
801
n
509
ARG
801
A
LEU
802
n
510
LEU
802
A
ALA
803
n
511
ALA
803
A
LYS
804
n
512
LYS
804
A
GLU
805
n
513
GLU
805
A
VAL
806
n
514
VAL
806
A
MET
807
n
515
MET
807
A
GLU
808
n
516
GLU
808
A
GLY
809
n
517
GLY
809
A
VAL
810
n
518
VAL
810
A
TYR
811
n
519
TYR
811
A
PRO
812
n
520
PRO
812
A
LEU
813
n
521
LEU
813
A
ALA
814
n
522
ALA
814
A
VAL
815
n
523
VAL
815
A
PRO
816
n
524
PRO
816
A
LEU
817
n
525
LEU
817
A
GLU
818
n
526
GLU
818
A
VAL
819
n
527
VAL
819
A
GLU
820
n
528
GLU
820
A
VAL
821
n
529
VAL
821
A
GLY
822
n
530
GLY
822
A
ILE
823
n
531
ILE
823
A
GLY
824
n
532
GLY
824
A
GLU
825
n
533
GLU
825
A
ASP
826
n
534
ASP
826
A
TRP
827
n
535
TRP
827
A
LEU
828
n
536
LEU
828
A
SER
829
n
537
SER
829
A
ALA
830
n
538
ALA
830
A
LYS
831
n
539
LYS
831
A
GLU
832
n
540
GLU
832
A
DG
101
n
1
DG
101
B
DA
102
n
2
DA
102
B
DC
103
n
3
DC
103
B
DC
104
n
4
DC
104
B
DA
105
n
5
DA
105
B
DC
106
n
6
DC
106
B
DG
107
n
7
DG
107
B
DG
108
n
8
DG
108
B
DC
109
n
9
DC
109
B
DG
110
n
10
DG
110
B
DC
111
n
11
DC
111
B
2DA
112
n
12
2DA
112
B
3DR
204
n
1
3DR
204
C
DT
205
n
2
DT
205
C
DG
206
n
3
DG
206
C
DC
207
n
4
DC
207
C
DG
208
n
5
DG
208
C
DC
209
n
6
DC
209
C
DC
210
n
7
DC
210
C
DG
211
n
8
DG
211
C
DT
212
n
9
DT
212
C
DG
213
n
10
DG
213
C
DG
214
n
11
DG
214
C
DT
215
n
12
DT
215
C
DC
216
n
13
DC
216
C
0.2529
0.0855
-0.1151
0.0677
-0.0828
0.1349
-0.0209
0.0335
-0.2138
-0.1127
0.0451
-0.2229
0.0635
0.0399
0.0018
0.3120
-0.1426
0.1623
0.3133
-0.1399
0.6694
refined
42.3601
-43.1566
-17.6372
X-RAY DIFFRACTION
0.2421
0.0000
-0.2072
0.4298
-0.3121
0.6446
0.0192
0.1285
0.0300
0.1138
0.0375
-0.0559
-0.2991
-0.1730
-0.0717
0.3675
-0.0869
0.0658
0.2803
-0.0104
0.2491
refined
31.1094
-16.0637
-4.8274
X-RAY DIFFRACTION
0.8581
-0.4455
-0.4379
0.4018
0.2517
0.2285
0.0745
-0.0445
-0.0467
0.0513
0.1143
-0.0065
-0.2032
0.0729
-0.1901
0.9335
0.2848
-0.0862
0.9792
-0.0846
0.5550
refined
9.1077
-13.6834
-3.7696
X-RAY DIFFRACTION
0.8500
0.2492
-0.1133
0.6856
0.1061
0.0828
-0.0076
0.1555
-0.0685
-0.0544
0.0228
-0.0277
0.3160
0.1247
-0.0162
1.4844
0.1777
0.0859
1.1945
-0.0789
0.4268
refined
7.8890
-12.5508
7.5615
X-RAY DIFFRACTION
0.0400
0.0342
0.0039
0.0885
0.0307
0.0462
-0.0534
0.0117
-0.0411
-0.1058
0.0681
0.0148
-0.0632
-0.0898
-0.0483
0.0561
-0.1669
0.0575
0.3435
0.0307
0.0019
refined
18.2030
-25.7815
-14.3715
X-RAY DIFFRACTION
0.4441
0.2177
-0.1659
0.5813
-0.0730
0.0656
0.0501
0.3718
-0.1876
0.0798
-0.1872
-0.0894
0.0121
0.2749
0.0860
0.1838
0.0689
-0.0099
0.3455
0.0481
0.3493
refined
36.9828
-23.1593
4.1028
X-RAY DIFFRACTION
0.0024
0.0118
-0.0209
0.0502
-0.1024
0.3071
-0.2758
0.0143
-0.1086
0.0351
0.1322
-0.1562
0.0434
0.0256
0.1387
0.2002
0.0413
-0.0154
0.3365
0.0149
0.3268
refined
37.0625
-24.2057
5.4082
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(CHAIN A AND RESID 295:419)
X-RAY DIFFRACTION
2
(CHAIN A AND RESID 420:635)
X-RAY DIFFRACTION
3
(CHAIN A AND RESID 636:678)
X-RAY DIFFRACTION
4
(CHAIN A AND RESID 679:693)
X-RAY DIFFRACTION
5
(CHAIN A AND RESID 694:832)
X-RAY DIFFRACTION
6
(CHAIN B)
X-RAY DIFFRACTION
7
(CHAIN C)
author_and_software_defined_assembly
PISA
3
trimeric
5890
-14
24680
A
HOH
122
I
O
HOH
1_555
A
MG
1
D
MG
MG
1_555
A
DDS
835
G
O2B
DDS
1_555
129.3
A
HOH
122
I
O
HOH
1_555
A
MG
1
D
MG
MG
1_555
A
DDS
835
G
O2A
DDS
1_555
155.0
A
DDS
835
G
O2B
DDS
1_555
A
MG
1
D
MG
MG
1_555
A
DDS
835
G
O2A
DDS
1_555
68.3
B
2DA
112
2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE
B
2DA
12
DA
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
297
A
O
ALA
5
A
N
VAL
332
A
N
VAL
40
A
O
HIS
333
A
O
HIS
41
A
N
ALA
326
A
N
ALA
34
A
O
ALA
327
A
O
ALA
35
A
N
PHE
306
A
N
PHE
14
A
N
ARG
450
A
N
ARG
158
A
O
ILE
599
A
O
ILE
307
A
N
ASN
565
A
N
ASN
273
A
O
SER
575
A
O
SER
283
A
N
LEU
780
A
N
LEU
488
A
O
VAL
788
A
O
VAL
496
A
O
LEU
789
A
O
LEU
497
A
N
VAL
607
A
N
VAL
315
A
N
LEU
606
A
N
LEU
314
A
O
GLY
824
A
O
GLY
532
A
N
VAL
720
A
N
VAL
428
A
O
ARG
728
A
O
ARG
436
1
A
HOH
95
I
HOH
1
A
HOH
130
I
HOH
1
A
HOH
131
I
HOH
1
A
CG
ARG
659
A
CG
ARG
367
1
Y
1
A
CD
ARG
659
A
CD
ARG
367
1
Y
1
A
NE
ARG
659
A
NE
ARG
367
1
Y
1
A
CZ
ARG
659
A
CZ
ARG
367
1
Y
1
A
NH1
ARG
659
A
NH1
ARG
367
1
Y
1
A
NH2
ARG
659
A
NH2
ARG
367
1
Y
1
A
C1
PGE
833
E
C1
PGE
1
1
N
1
A
O1
PGE
833
E
O1
PGE
1
1
N
1
A
C2
PGE
833
E
C2
PGE
1
1
N
1
A
O4
PGE
833
E
O4
PGE
1
1
N
1
A
C6
PGE
833
E
C6
PGE
1
1
N
1
A
C5
PGE
833
E
C5
PGE
1
1
N
1
A
C1
PGE
834
F
C1
PGE
1
1
N
1
A
O1
PGE
834
F
O1
PGE
1
1
N
1
A
C2
PGE
834
F
C2
PGE
1
1
N
1
A
O4
PGE
834
F
O4
PGE
1
1
N
1
A
C6
PGE
834
F
C6
PGE
1
1
N
1
A
C5
PGE
834
F
C5
PGE
1
1
N
1
A
ALA
293
A
ALA
1
1
Y
1
A
LEU
294
A
LEU
2
1
Y
1
A
MET
646
A
MET
354
1
Y
1
A
PHE
647
A
PHE
355
1
Y
1
A
GLY
648
A
GLY
356
1
Y
1
A
VAL
649
A
VAL
357
1
Y
1
A
PRO
650
A
PRO
358
1
Y
1
A
ARG
651
A
ARG
359
1
Y
1
A
GLU
652
A
GLU
360
1
Y
1
A
ALA
653
A
ALA
361
1
Y
1
A
VAL
654
A
VAL
362
1
Y
1
A
ASP
655
A
ASP
363
1
Y
1
2.40
0.30
108.30
110.70
B
B
B
O4'
C1'
N9
DG
DG
DG
101
101
101
N
1
2.48
0.30
108.30
110.78
B
B
B
O4'
C1'
N1
DC
DC
DC
103
103
103
N
1
3.31
0.30
108.30
111.61
B
B
B
O4'
C1'
N9
DG
DG
DG
108
108
108
N
1
17.28
1.10
110.50
127.78
B
B
B
O3'
P
OP2
DC
2DA
2DA
111
112
112
Y
1
-19.85
2.20
105.20
85.35
B
B
B
O3'
P
OP1
DC
2DA
2DA
111
112
112
Y
1
-6.65
1.00
110.10
103.45
C
C
C
C1'
O4'
C4'
DG
DG
DG
214
214
214
N
1
4.28
0.30
108.30
112.58
C
C
C
O4'
C1'
N9
DG
DG
DG
214
214
214
N
1
A
VAL
433
-126.53
-69.11
1
A
ASP
496
-86.51
-73.38
1
A
ILE
503
-55.43
-70.09
1
A
HIS
526
-172.74
140.90
1
A
TYR
545
-123.62
-62.77
1
A
VAL
586
-162.57
-29.94
1
A
HIS
639
-90.30
30.72
1
A
THR
640
-142.84
-47.32
1
A
SER
644
-113.58
61.01
1
A
MET
658
-72.43
45.55
1
A
ARG
659
-140.09
-30.04
1
A
ARG
677
-38.89
-34.41
1
A
VAL
753
-62.86
-70.46
1
A
HIS
784
69.13
-59.67
1
A
TYR
811
-165.29
89.89
1
A
LEU
813
-114.31
-168.31
1
A
LYS
831
-106.54
40.99
2.85070
0.00000
-0.00000
2.85070
-0.00000
-11.63630
0.266
0.210
0.212
2.39
47.33
1287
24927
24927
5.160
99.7
0.350
1
isotropic and tls
1.990
MOLECULAR REPLACEMENT
0.90
1.11
PDB entry 3LWL
ML
FLAT BULK SOLVENT MODEL
40.00
0.40
2.39
47.33
131
4871
44
499
4197
0.006
4886
0.921
6709
18.508
1914
0.048
735
0.004
783
0.3284
0.2849
2.4878
123
2569
97.00
0.3790
0.2796
2.6010
147
2565
100.00
0.3462
0.2707
2.7381
149
2609
100.00
0.3617
0.2675
2.9096
137
2604
100.00
0.3315
0.2426
3.1342
130
2617
100.00
0.2390
0.2220
3.4496
148
2629
100.00
0.2448
0.1926
3.9485
156
2627
100.00
0.2171
0.1575
4.9739
140
2658
100.00
0.2306
0.1850
47.3380
157
2762
100.00
2.3
50
3PO5
24927
0
-3
0.145
1
12.82
9.04
99.5
2.3
2.43
1.24
1
5.61
model building
PHENIX
(phenix.refine: dev_572)
refinement
PHENIX
(phenix.refine: dev_572)
data reduction
XDS
data scaling
XDS
phasing
PHENIX
dev_572
Structure of a mutant of the large fragment of DNA polymerase I from Thermus Auqaticus in complex with an abasic site and ddATP
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
7
N
N
8
N
N
8
N
N
8
N
N
A
GLU
337
A
GLU
45
HELX_P
A
ARG
343
A
ARG
51
1
1
7
A
LEU
352
A
LEU
60
HELX_P
A
GLU
363
A
GLU
71
1
2
12
A
ASP
372
A
ASP
80
HELX_P
A
ASP
381
A
ASP
89
1
3
10
A
THR
386
A
THR
94
HELX_P
A
TYR
394
A
TYR
102
1
4
9
A
GLU
401
A
GLU
109
HELX_P
A
LEU
420
A
LEU
128
1
5
20
A
GLU
423
A
GLU
131
HELX_P
A
VAL
433
A
VAL
141
1
6
11
A
VAL
433
A
VAL
141
HELX_P
A
GLY
448
A
GLY
156
1
7
16
A
ASP
452
A
ASP
160
HELX_P
A
GLY
479
A
GLY
187
1
8
28
A
SER
486
A
SER
194
HELX_P
A
ASP
496
A
ASP
204
1
9
11
A
SER
515
A
SER
223
HELX_P
A
LEU
522
A
LEU
230
1
10
8
A
HIS
526
A
HIS
234
HELX_P
A
TYR
545
A
TYR
253
1
11
20
A
PRO
548
A
PRO
256
HELX_P
A
ILE
553
A
ILE
261
5
12
6
A
THR
588
A
THR
296
HELX_P
A
ARG
596
A
ARG
304
1
13
9
A
GLN
613
A
GLN
321
HELX_P
A
GLY
624
A
GLY
332
1
14
12
A
ASP
625
A
ASP
333
HELX_P
A
GLN
633
A
GLN
341
1
15
9
A
ASP
637
A
ASP
345
HELX_P
A
THR
642
A
THR
350
1
16
6
A
ARG
659
A
ARG
367
HELX_P
A
TYR
671
A
TYR
379
1
17
13
A
SER
674
A
SER
382
HELX_P
A
LEU
682
A
LEU
390
1
18
9
A
PRO
685
A
PRO
393
HELX_P
A
PHE
700
A
PHE
408
1
19
16
A
PHE
700
A
PHE
408
HELX_P
A
GLY
718
A
GLY
426
1
20
19
A
PRO
731
A
PRO
439
HELX_P
A
ALA
735
A
ALA
443
5
21
5
A
VAL
737
A
VAL
445
HELX_P
A
MET
775
A
MET
483
1
22
39
A
ARG
795
A
ARG
503
HELX_P
A
GLY
809
A
GLY
517
1
23
15
A
LEU
828
A
LEU
536
HELX_P
A
GLU
832
A
GLU
540
5
24
5
covale
1.606
both
B
DC
111
B
O3'
DC
11
1_555
B
2DA
112
B
P
2DA
12
1_555
covale
1.607
both
C
3DR
204
C
O3'
3DR
1
1_555
C
DT
205
C
P
DT
2
1_555
metalc
2.142
A
MG
1
D
MG
MG
1_555
A
HOH
122
I
O
HOH
1_555
metalc
2.371
A
MG
1
D
MG
MG
1_555
A
DDS
835
G
O2B
DDS
1_555
metalc
2.819
A
MG
1
D
MG
MG
1_555
A
DDS
835
G
O2A
DDS
1_555
hydrog
WATSON-CRICK
B
DG
101
B
N1
DG
1
1_555
C
DC
216
C
N3
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
101
B
N2
DG
1
1_555
C
DC
216
C
O2
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
101
B
O6
DG
1
1_555
C
DC
216
C
N4
DC
13
1_555
hydrog
WATSON-CRICK
B
DA
102
B
N1
DA
2
1_555
C
DT
215
C
N3
DT
12
1_555
hydrog
WATSON-CRICK
B
DA
102
B
N6
DA
2
1_555
C
DT
215
C
O4
DT
12
1_555
hydrog
WATSON-CRICK
B
DC
103
B
N3
DC
3
1_555
C
DG
214
C
N1
DG
11
1_555
hydrog
WATSON-CRICK
B
DC
103
B
N4
DC
3
1_555
C
DG
214
C
O6
DG
11
1_555
hydrog
WATSON-CRICK
B
DC
103
B
O2
DC
3
1_555
C
DG
214
C
N2
DG
11
1_555
hydrog
WATSON-CRICK
B
DC
104
B
N3
DC
4
1_555
C
DG
213
C
N1
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
104
B
N4
DC
4
1_555
C
DG
213
C
O6
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
104
B
O2
DC
4
1_555
C
DG
213
C
N2
DG
10
1_555
hydrog
WATSON-CRICK
B
DA
105
B
N1
DA
5
1_555
C
DT
212
C
N3
DT
9
1_555
hydrog
WATSON-CRICK
B
DA
105
B
N6
DA
5
1_555
C
DT
212
C
O4
DT
9
1_555
hydrog
WATSON-CRICK
B
DC
106
B
N3
DC
6
1_555
C
DG
211
C
N1
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
106
B
N4
DC
6
1_555
C
DG
211
C
O6
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
106
B
O2
DC
6
1_555
C
DG
211
C
N2
DG
8
1_555
hydrog
WATSON-CRICK
B
DG
107
B
N1
DG
7
1_555
C
DC
210
C
N3
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
107
B
N2
DG
7
1_555
C
DC
210
C
O2
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
107
B
O6
DG
7
1_555
C
DC
210
C
N4
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
108
B
N1
DG
8
1_555
C
DC
209
C
N3
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
108
B
N2
DG
8
1_555
C
DC
209
C
O2
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
108
B
O6
DG
8
1_555
C
DC
209
C
N4
DC
6
1_555
hydrog
WATSON-CRICK
B
DC
109
B
N3
DC
9
1_555
C
DG
208
C
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
109
B
N4
DC
9
1_555
C
DG
208
C
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
109
B
O2
DC
9
1_555
C
DG
208
C
N2
DG
5
1_555
hydrog
WATSON-CRICK
B
DG
110
B
N1
DG
10
1_555
C
DC
207
C
N3
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
110
B
N2
DG
10
1_555
C
DC
207
C
O2
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
110
B
O6
DG
10
1_555
C
DC
207
C
N4
DC
4
1_555
hydrog
WATSON-CRICK
B
DC
111
B
N3
DC
11
1_555
C
DG
206
C
N1
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
111
B
N4
DC
11
1_555
C
DG
206
C
O6
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
111
B
O2
DC
11
1_555
C
DG
206
C
N2
DG
3
1_555
hydrog
WATSON-CRICK
B
2DA
112
B
N1
2DA
12
1_555
C
DT
205
C
N3
DT
2
1_555
hydrog
WATSON-CRICK
B
2DA
112
B
N6
2DA
12
1_555
C
DT
205
C
O4
DT
2
1_555
TRANSFERASE/DNA
DNA polymerase, lesion bypass, apsite, abasic site, TRANSFERASE-DNA complex
A
TRP
299
A
TRP
7
1
A
PRO
300
A
PRO
8
5.83
A
ASP
578
A
ASP
286
1
A
PRO
579
A
PRO
287
-0.86
DPO1_THEAQ
UNP
1
293
P19821
ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDD
PMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLD
VAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKI
LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYS
QIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAF
IERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRL
EEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE
3PO5
PDB
2
3PO5
3PO5
PDB
3
3PO5
293
832
3PO5
293
832
P19821
A
1
1
540
101
112
3PO5
101
112
3PO5
B
2
1
12
204
216
3PO5
204
216
3PO5
C
3
1
13
1
ILE
engineered mutation
LYS
614
3PO5
A
P19821
UNP
614
322
1
MET
engineered mutation
LYS
747
3PO5
A
P19821
UNP
747
455
4
2
2
4
2
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
296
A
GLU
4
A
PRO
298
A
PRO
6
A
ARG
331
A
ARG
39
A
ARG
334
A
ARG
42
A
LEU
321
A
LEU
29
A
ARG
328
A
ARG
36
A
PHE
306
A
PHE
14
A
LEU
311
A
LEU
19
A
ARG
450
A
ARG
158
A
LEU
451
A
LEU
159
A
PHE
598
A
PHE
306
A
ILE
599
A
ILE
307
A
ARG
563
A
ARG
271
A
ASN
565
A
ASN
273
A
SER
575
A
SER
283
A
SER
577
A
SER
285
A
ARG
778
A
ARG
486
A
GLN
782
A
GLN
490
A
GLU
786
A
GLU
494
A
PRO
792
A
PRO
500
A
TRP
604
A
TRP
312
A
TYR
611
A
TYR
319
A
VAL
819
A
VAL
527
A
GLY
824
A
GLY
532
A
TYR
719
A
TYR
427
A
GLU
721
A
GLU
429
A
ARG
727
A
ARG
435
A
TYR
729
A
TYR
437
BINDING SITE FOR RESIDUE MG A 1
A
MG
1
Software
3
BINDING SITE FOR RESIDUE PGE A 833
A
PGE
833
Software
3
BINDING SITE FOR RESIDUE PGE A 834
A
PGE
834
Software
5
BINDING SITE FOR RESIDUE DDS A 835
A
DDS
835
Software
10
BINDING SITE FOR RESIDUE GOL B 1
B
GOL
1
Software
4
A
HOH
122
I
HOH
3
1_555
A
ASP
610
A
ASP
318
3
1_555
A
DDS
835
G
DDS
3
1_555
A
ARG
313
A
ARG
21
3
1_555
A
TRP
318
A
TRP
26
3
1_555
A
LEU
552
A
LEU
260
3
1_555
A
THR
544
A
THR
252
5
1_555
A
PRO
579
A
PRO
287
5
1_555
A
ASN
580
A
ASN
288
5
1_555
C
DC
209
C
DC
6
5
1_555
C
DC
210
C
DC
7
5
1_555
A
MG
1
D
MG
10
1_555
A
HOH
124
I
HOH
10
1_555
A
HOH
128
I
HOH
10
1_555
A
ARG
587
A
ARG
295
10
1_555
A
GLN
613
A
GLN
321
10
1_555
A
HIS
639
A
HIS
347
10
1_555
A
LYS
663
A
LYS
371
10
1_555
A
PHE
667
A
PHE
375
10
1_555
A
TYR
671
A
TYR
379
10
1_555
B
2DA
112
B
2DA
12
10
1_555
B
DC
106
B
DC
6
4
1_555
B
DG
107
B
DG
7
4
1_555
B
DG
108
B
DG
8
4
1_555
C
DC
209
C
DC
6
4
1_555
152
P 31 2 1